CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 89 | T89I | nonsyn | aCa | aTa | 8321 | 8313 | 0.999039 | 25657-25659 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 89 | T89I | aCa | aTa | 8313 | 8321 | All | 0.00159 |
ORF3a | 89 | T89I | aCa | aTa | 2204 | 2204 | B.1.1.7 | 0.001973 |
ORF3a | 89 | T89I | aCa | aTa | 933 | 933 | AY.4 | 0.001452 |
ORF3a | 89 | T89I | aCa | aTa | 501 | 501 | B.1.617.2 | 0.001886 |
ORF3a | 89 | T89I | aCa | aTa | 440 | 444 | AY.25 | 0.002647 |
ORF3a | 89 | T89I | aCa | aTa | 238 | 239 | AY.43 | 0.001054 |
ORF3a | 89 | T89I | aCa | aTa | 234 | 235 | B.1.525 | 0.02648 |
ORF3a | 89 | T89I | aCa | aTa | 192 | 192 | B.1.2 | 0.001691 |
ORF3a | 89 | T89I | aCa | aTa | 172 | 172 | B.1.429 | 0.004047 |
ORF3a | 89 | T89I | aCa | aTa | 139 | 139 | B.1.177 | 0.00183 |
ORF3a | 89 | T89I | aCa | aTa | 124 | 124 | AY.54 | 0.011823 |
ORF3a | 89 | T89I | aCa | aTa | 122 | 122 | B.1.451 | 1 |
ORF3a | 89 | T89I | aCa | aTa | 120 | 120 | B.1 | 0.001099 |
ORF3a | 89 | T89I | aCa | aTa | 111 | 111 | P.1 | 0.001749 |
ORF3a | 89 | T89I | aCa | aTa | 108 | 108 | AY.44 | 0.000657 |
ORF3a | 89 | T89I | aCa | aTa | 103 | 103 | AY.57 | 0.067585 |
ORF3a | 89 | T89I | aCa | aTa | 97 | 97 | AY.103 | 0.000602 |
ORF3a | 89 | T89I | aCa | aTa | 93 | 93 | AY.13 | 0.014971 |
ORF3a | 89 | T89I | aCa | aTa | 87 | 87 | AY.23 | 0.006068 |
ORF3a | 89 | T89I | aCa | aTa | 85 | 85 | B.1.1.317 | 0.034994 |
ORF3a | 89 | T89I | aCa | aTa | 82 | 82 | B.1.1 | 0.001488 |
ORF3a | 89 | T89I | aCa | aTa | 71 | 71 | B.1.524 | 0.099859 |
ORF3a | 89 | T89I | aCa | aTa | 68 | 68 | B.1.232 | 0.036539 |
ORF3a | 89 | T89I | aCa | aTa | 67 | 67 | AY.106 | 0.022438 |
ORF3a | 89 | T89I | aCa | aTa | 54 | 54 | AY.26 | 0.001529 |
ORF3a | 89 | T89I | aCa | aTa | 54 | 54 | B.1.1.519 | 0.002144 |
ORF3a | 89 | T89I | aCa | aTa | 52 | 52 | Q.3 | 0.007542 |
ORF3a | 89 | T89I | aCa | aTa | 48 | 48 | AY.102 | 0.001273 |
ORF3a | 89 | T89I | aCa | aTa | 45 | 45 | AY.20 | 0.001749 |
ORF3a | 89 | T89I | aCa | aTa | 44 | 44 | B.1.526 | 0.001034 |
ORF3a | 89 | T89I | aCa | aTa | 43 | 43 | B.1.258 | 0.002862 |
ORF3a | 89 | T89I | aCa | aTa | 42 | 42 | AY.39 | 0.001038 |
ORF3a | 89 | T89I | aCa | aTa | 40 | 41 | AY.3 | 0.000398 |
ORF3a | 89 | T89I | aCa | aTa | 41 | 41 | B.1.621 | 0.003629 |
ORF3a | 89 | T89I | aCa | aTa | 40 | 40 | B.1.1.368 | 0.123457 |
ORF3a | 89 | T89I | aCa | aTa | 39 | 39 | AY.29 | 0.000615 |
ORF3a | 89 | T89I | aCa | aTa | 39 | 39 | AY.48 | 0.01814 |
ORF3a | 89 | T89I | aCa | aTa | 37 | 37 | B.1.351 | 0.0011 |
ORF3a | 89 | T89I | aCa | aTa | 36 | 36 | AY.108 | 0.039691 |
ORF3a | 89 | T89I | aCa | aTa | 33 | 33 | AY.6 | 0.001357 |
ORF3a | 89 | T89I | aCa | aTa | 31 | 31 | AY.98 | 0.002449 |
ORF3a | 89 | T89I | aCa | aTa | 31 | 31 | R.1 | 0.00279 |
ORF3a | 89 | T89I | aCa | aTa | 27 | 27 | B.1.1.284 | 0.0029 |
ORF3a | 89 | T89I | aCa | aTa | 25 | 25 | AY.4.2 | 0.000542 |
ORF3a | 89 | T89I | aCa | aTa | 24 | 24 | AY.45 | 0.00292 |
ORF3a | 89 | T89I | aCa | aTa | 24 | 24 | B.1.1.214 | 0.001331 |
ORF3a | 89 | T89I | aCa | aTa | 24 | 24 | B.1.620 | 0.022706 |
ORF3a | 89 | T89I | aCa | aTa | 22 | 22 | B.1.139 | 0.016129 |
ORF3a | 89 | T89I | aCa | aTa | 21 | 21 | AY.75 | 0.001176 |
ORF3a | 89 | T89I | aCa | aTa | 21 | 21 | Q.7 | 0.023333 |
ORF3a | 89 | T89I | aCa | aTa | 20 | 20 | AY.119 | 0.000706 |
ORF3a | 89 | T89I | aCa | aTa | 20 | 20 | AY.5 | 0.000413 |
ORF3a | 89 | T89I | aCa | aTa | 20 | 20 | Q.8 | 0.003298 |
ORF3a | 89 | T89I | aCa | aTa | 17 | 18 | AY.120 | 0.000632 |
ORF3a | 89 | T89I | aCa | aTa | 18 | 18 | C.37 | 0.002089 |
ORF3a | 89 | T89I | aCa | aTa | 16 | 16 | AW.1 | 0.04878 |
ORF3a | 89 | T89I | aCa | aTa | 15 | 15 | AY.117 | 0.001268 |
ORF3a | 89 | T89I | aCa | aTa | 15 | 15 | AY.27 | 0.000971 |
ORF3a | 89 | T89I | aCa | aTa | 15 | 15 | B.1.1.306 | 0.006576 |
ORF3a | 89 | T89I | aCa | aTa | 15 | 15 | P.1.14 | 0.000717 |
ORF3a | 89 | T89I | aCa | aTa | 14 | 14 | AY.47 | 0.000435 |
ORF3a | 89 | T89I | aCa | aTa | 14 | 14 | B.1.596 | 0.00122 |
ORF3a | 89 | T89I | aCa | aTa | 13 | 13 | AY.33 | 0.000868 |
ORF3a | 89 | T89I | aCa | aTa | 12 | 12 | AY.100 | 0.000552 |
ORF3a | 89 | T89I | aCa | aTa | 12 | 12 | AY.61 | 0.001257 |
ORF3a | 89 | T89I | aCa | aTa | 12 | 12 | B.1.623 | 0.006438 |
ORF3a | 89 | T89I | aCa | aTa | 11 | 11 | AY.39.1 | 0.000436 |
ORF3a | 89 | T89I | aCa | aTa | 11 | 11 | AY.58 | 0.009982 |
ORF3a | 89 | T89I | aCa | aTa | 11 | 11 | B.1.177.8 | 0.008277 |
ORF3a | 89 | T89I | aCa | aTa | 11 | 11 | B.1.243 | 0.000765 |
ORF3a | 89 | T89I | aCa | aTa | 11 | 11 | B.1.409 | 0.008594 |
ORF3a | 89 | T89I | aCa | aTa | 11 | 11 | P.1.15 | 0.002556 |
ORF3a | 89 | T89I | aCa | aTa | 10 | 10 | AY.24 | 0.00431 |
ORF3a | 89 | T89I | aCa | aTa | 10 | 10 | AY.3.1 | 0.000853 |
ORF3a | 89 | T89I | aCa | aTa | 10 | 10 | B.1.1.348 | 0.007962 |
ORF3a | 89 | T89I | aCa | aTa | 10 | 10 | B.1.396 | 0.007057 |
ORF3a | 89 | T89I | aCa | aTa | 10 | 10 | B.1.497 | 0.003148 |
ORF3a | 89 | T89I | aCa | aTa | 10 | 10 | B.1.541 | 0.044248 |
ORF3a | 89 | T89I | aCa | aTa | 9 | 9 | AY.4.5 | 0.000967 |
ORF3a | 89 | T89I | aCa | aTa | 9 | 9 | AY.95 | 0.006849 |
ORF3a | 89 | T89I | aCa | aTa | 9 | 9 | B.1.160 | 0.000281 |
ORF3a | 89 | T89I | aCa | aTa | 9 | 9 | B.1.427 | 0.000454 |
ORF3a | 89 | T89I | aCa | aTa | 8 | 8 | AY.46.6 | 0.000578 |
ORF3a | 89 | T89I | aCa | aTa | 8 | 8 | B.1.1.25 | 0.004548 |
ORF3a | 89 | T89I | aCa | aTa | 8 | 8 | B.1.160.27 | 0.121212 |
ORF3a | 89 | T89I | aCa | aTa | 8 | 8 | B.1.177.21 | 0.000612 |
ORF3a | 89 | T89I | aCa | aTa | 8 | 8 | B.1.177.58 | 0.010652 |
ORF3a | 89 | T89I | aCa | aTa | 8 | 8 | B.1.177.7 | 0.001319 |
ORF3a | 89 | T89I | aCa | aTa | 8 | 8 | B.1.240 | 0.001725 |
ORF3a | 89 | T89I | aCa | aTa | 8 | 8 | B.1.369 | 0.002282 |
ORF3a | 89 | T89I | aCa | aTa | 8 | 8 | B.1.466.2 | 0.00313 |
ORF3a | 89 | T89I | aCa | aTa | 7 | 7 | AY.42 | 0.000282 |
ORF3a | 89 | T89I | aCa | aTa | 7 | 7 | B.1.221 | 0.000497 |
ORF3a | 89 | T89I | aCa | aTa | 7 | 7 | B.1.311 | 0.001922 |
ORF3a | 89 | T89I | aCa | aTa | 7 | 7 | B.1.617.1 | 0.000903 |
ORF3a | 89 | T89I | aCa | aTa | 7 | 7 | B.3 | 0.005814 |
ORF3a | 89 | T89I | aCa | aTa | 7 | 7 | P.1.9 | 0.033654 |
ORF3a | 89 | T89I | aCa | aTa | 6 | 6 | AY.116 | 0.001721 |
ORF3a | 89 | T89I | aCa | aTa | 6 | 6 | AY.120.1 | 0.001926 |
ORF3a | 89 | T89I | aCa | aTa | 6 | 6 | AY.35 | 0.001398 |
ORF3a | 89 | T89I | aCa | aTa | 6 | 6 | AY.46.4 | 0.000987 |
ORF3a | 89 | T89I | aCa | aTa | 6 | 6 | AY.99.2 | 0.000553 |
ORF3a | 89 | T89I | aCa | aTa | 6 | 6 | B.1.1.1 | 0.00196 |
ORF3a | 89 | T89I | aCa | aTa | 6 | 6 | B.1.1.51 | 0.010309 |
ORF3a | 89 | T89I | aCa | aTa | 6 | 6 | P.2 | 0.00112 |
ORF3a | 89 | T89I | aCa | aTa | 5 | 5 | AY.113 | 0.000712 |
ORF3a | 89 | T89I | aCa | aTa | 5 | 5 | AY.16 | 0.001898 |
ORF3a | 89 | T89I | aCa | aTa | 5 | 5 | AY.46.2 | 0.003177 |
ORF3a | 89 | T89I | aCa | aTa | 5 | 5 | AY.75.1 | 0.000902 |
ORF3a | 89 | T89I | aCa | aTa | 5 | 5 | B.1.1.354 | 0.02193 |
ORF3a | 89 | T89I | aCa | aTa | 5 | 5 | B.1.351.2 | 0.001513 |
ORF3a | 89 | T89I | aCa | aTa | 5 | 5 | B.1.438.1 | 0.000536 |
ORF3a | 89 | T89I | aCa | aTa | 5 | 5 | P.1.17 | 0.000809 |
ORF3a | 89 | T89I | aCa | aTa | 4 | 4 | AY.14 | 0.000352 |
ORF3a | 89 | T89I | aCa | aTa | 4 | 4 | AY.34.1 | 0.00204 |
ORF3a | 89 | T89I | aCa | aTa | 4 | 4 | AY.36 | 0.000593 |
ORF3a | 89 | T89I | aCa | aTa | 4 | 4 | AY.9 | 0.00027 |
ORF3a | 89 | T89I | aCa | aTa | 4 | 4 | AY.9.2 | 0.000147 |
ORF3a | 89 | T89I | aCa | aTa | 4 | 4 | AY.97 | 0.006803 |
ORF3a | 89 | T89I | aCa | aTa | 4 | 4 | B | 0.000511 |
ORF3a | 89 | T89I | aCa | aTa | 4 | 4 | B.1.1.198 | 0.005874 |
ORF3a | 89 | T89I | aCa | aTa | 4 | 4 | B.1.1.253 | 0.010025 |
ORF3a | 89 | T89I | aCa | aTa | 4 | 4 | B.1.1.28 | 0.001245 |
ORF3a | 89 | T89I | aCa | aTa | 4 | 4 | B.1.1.298 | 0.003448 |
ORF3a | 89 | T89I | aCa | aTa | 4 | 4 | B.1.1.398 | 0.012903 |
ORF3a | 89 | T89I | aCa | aTa | 4 | 4 | B.1.1.87 | 0.266667 |
ORF3a | 89 | T89I | aCa | aTa | 4 | 4 | B.1.177.4 | 0.000844 |
ORF3a | 89 | T89I | aCa | aTa | 4 | 4 | B.1.177.54 | 0.002426 |
ORF3a | 89 | T89I | aCa | aTa | 4 | 4 | B.1.177.86 | 0.000734 |
ORF3a | 89 | T89I | aCa | aTa | 4 | 4 | B.1.234 | 0.000528 |
ORF3a | 89 | T89I | aCa | aTa | 4 | 4 | B.1.258.17 | 0.000416 |
ORF3a | 89 | T89I | aCa | aTa | 4 | 4 | B.1.499 | 0.004202 |
ORF3a | 89 | T89I | aCa | aTa | 4 | 4 | B.1.561 | 0.001588 |
ORF3a | 89 | T89I | aCa | aTa | 4 | 4 | B.1.595 | 0.001044 |
ORF3a | 89 | T89I | aCa | aTa | 4 | 4 | B.6 | 0.00364 |
ORF3a | 89 | T89I | aCa | aTa | 4 | 4 | C.36 | 0.003643 |
ORF3a | 89 | T89I | aCa | aTa | 4 | 4 | Q.1 | 0.000505 |
ORF3a | 89 | T89I | aCa | aTa | 3 | 3 | AY.5.3 | 0.001012 |
ORF3a | 89 | T89I | aCa | aTa | 3 | 3 | AY.7.1 | 0.000338 |
ORF3a | 89 | T89I | aCa | aTa | 3 | 3 | AY.71 | 0.001425 |
ORF3a | 89 | T89I | aCa | aTa | 3 | 3 | AY.78 | 0.004622 |
ORF3a | 89 | T89I | aCa | aTa | 3 | 3 | AY.98.1 | 0.000145 |
ORF3a | 89 | T89I | aCa | aTa | 3 | 3 | AY.99 | 0.003148 |
ORF3a | 89 | T89I | aCa | aTa | 3 | 3 | B.1.1.157 | 0.00274 |
ORF3a | 89 | T89I | aCa | aTa | 3 | 3 | B.1.1.318 | 0.000905 |
ORF3a | 89 | T89I | aCa | aTa | 3 | 3 | B.1.1.39 | 0.001529 |
ORF3a | 89 | T89I | aCa | aTa | 3 | 3 | B.1.1.434 | 0.001046 |
ORF3a | 89 | T89I | aCa | aTa | 3 | 3 | B.1.1.45 | 0.042254 |
ORF3a | 89 | T89I | aCa | aTa | 3 | 3 | B.1.1.63 | 0.001157 |
ORF3a | 89 | T89I | aCa | aTa | 3 | 3 | B.1.160.25 | 0.033333 |
ORF3a | 89 | T89I | aCa | aTa | 3 | 3 | B.1.177.10 | 0.002634 |
ORF3a | 89 | T89I | aCa | aTa | 3 | 3 | B.1.177.44 | 0.001557 |
ORF3a | 89 | T89I | aCa | aTa | 3 | 3 | B.1.177.57 | 0.000843 |
ORF3a | 89 | T89I | aCa | aTa | 3 | 3 | B.1.177.77 | 0.002179 |
ORF3a | 89 | T89I | aCa | aTa | 3 | 3 | B.1.177.81 | 0.000568 |
ORF3a | 89 | T89I | aCa | aTa | 3 | 3 | B.1.265 | 0.003812 |
ORF3a | 89 | T89I | aCa | aTa | 3 | 3 | B.1.36 | 0.000438 |
ORF3a | 89 | T89I | aCa | aTa | 3 | 3 | B.1.36.29 | 0.001552 |
ORF3a | 89 | T89I | aCa | aTa | 3 | 3 | B.1.543 | 0.03 |
ORF3a | 89 | T89I | aCa | aTa | 3 | 3 | B.1.582 | 0.001472 |
ORF3a | 89 | T89I | aCa | aTa | 3 | 3 | Q.4 | 0.001364 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | AY.1 | 0.000791 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | AY.110 | 0.000225 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | AY.111 | 0.000366 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | AY.12 | 0.000632 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | AY.120.2.1 | 0.000997 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | AY.29.1 | 0.000441 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | AY.30 | 0.000791 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | AY.39.1.1 | 0.001449 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | AY.4.4 | 0.000818 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | AY.46 | 0.000208 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | AY.5.4 | 0.000553 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | AY.53 | 0.000575 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | AY.59 | 0.001059 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | AY.66 | 0.002139 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | AY.68 | 0.000547 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | AY.69 | 0.000373 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | AY.85 | 0.000854 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | AY.9.1 | 0.000167 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | AY.92 | 0.000575 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | B.1.1.170 | 0.002494 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | B.1.1.174 | 0.006757 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | B.1.1.205 | 0.007435 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | B.1.1.222 | 0.000408 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | B.1.1.229 | 0.011494 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | B.1.1.265 | 0.006309 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | B.1.1.294 | 0.002532 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | B.1.1.316 | 0.00185 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | B.1.1.37 | 0.000386 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | B.1.1.370 | 0.025316 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | B.1.1.372 | 0.001377 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | B.1.1.397 | 0.004505 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | B.1.1.464 | 0.002946 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | B.1.1.486 | 0.003155 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | B.1.1.523 | 0.003125 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | B.1.127 | 0.004396 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | B.1.131 | 0.017544 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | B.1.177.19 | 0.002861 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | B.1.177.66 | 0.083333 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | B.1.340 | 0.008584 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | B.1.36.38 | 0.003284 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | B.1.404 | 0.002604 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | B.1.428 | 0.002041 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | B.1.459 | 0.008163 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | B.1.470 | 0.002809 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | B.1.523 | 0.004902 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | B.1.544 | 0.012048 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | B.1.568 | 0.002222 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | B.1.617.3 | 0.00597 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | B.1.621.1 | 0.001012 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | B.1.628 | 0.000705 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | B.40 | 0.000729 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | C.36.3 | 0.001134 |
ORF3a | 89 | T89I | aCa | aTa | 2 | 2 | D.2 | 0.00015 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | A | 0.000387 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | A.1 | 0.000282 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | A.21 | 0.00277 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | AY.10 | 0.00053 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | AY.11 | 0.001339 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | AY.116.1 | 0.000311 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | AY.120.2 | 0.001285 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | AY.28 | 0.00189 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | AY.34 | 0.000097 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | AY.4.3 | 0.000842 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | AY.41 | 0.000294 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | AY.46.1 | 0.001027 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | AY.46.3 | 0.000934 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | AY.64 | 0.000595 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | AY.65 | 0.000533 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | AY.70 | 0.000209 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | AY.72 | 0.001361 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | AY.74 | 0.000116 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | AY.77 | 0.001127 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | AY.81 | 0.001992 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | AY.84 | 0.000437 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | AY.86 | 0.00083 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | AY.87 | 0.000833 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | AY.90 | 0.000684 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | AY.94 | 0.000443 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.1.10 | 0.001115 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.1.110 | 0.090909 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.1.163 | 0.007634 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.1.216 | 0.00089 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.1.242 | 0.043478 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.1.257 | 0.009709 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.1.263 | 0.001558 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.1.296 | 0.018182 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.1.319 | 0.017544 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.1.33 | 0.000421 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.1.43 | 0.014925 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.1.432 | 0.001266 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.1.462 | 0.008621 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.1.506 | 0.037037 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.1.517 | 0.006803 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.1.525 | 0.005464 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.1.54 | 0.003021 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.1.61 | 0.008772 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.1.70 | 0.000341 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.1.83 | 0.00271 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.108 | 0.005814 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.128 | 0.000635 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.13 | 0.002375 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.14 | 0.017544 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.147 | 0.000756 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.157 | 0.002985 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.160.12 | 0.00641 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.177.11 | 0.001698 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.177.23 | 0.003236 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.177.5 | 0.001242 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.177.60 | 0.000218 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.177.62 | 0.001192 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.201 | 0.005682 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.210 | 0.002132 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.279 | 0.000514 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.320 | 0.001245 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.324 | 0.001605 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.325 | 0.006897 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.346 | 0.001311 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.349 | 0.000715 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.351.3 | 0.000876 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.354 | 0.043478 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.36.10 | 0.004785 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.36.24 | 0.006173 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.36.27 | 0.000763 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.36.36 | 0.000602 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.361 | 0.001289 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.367 | 0.000792 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.389 | 0.001002 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.391 | 0.001127 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.400 | 0.000429 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.408 | 0.00369 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.462 | 0.007246 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.538 | 0.008065 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.552 | 0.015152 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.556 | 0.007519 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.564.1 | 0.001577 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.565 | 0.00081 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.576 | 0.000907 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.600 | 0.005848 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.609 | 0.000479 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.1.637 | 0.000073 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | B.4.6 | 0.016667 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | C.11 | 0.010638 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | C.16 | 0.00106 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | C.25 | 0.125 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | C.30 | 0.001727 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | C.32 | 0.023256 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | C.35 | 0.000774 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | C.8 | 0.004464 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | P.1.2 | 0.001156 |
ORF3a | 89 | T89I | aCa | aTa | 1 | 1 | P.1.7 | 0.000319 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|