CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 88 | V88L | nonsyn | Gta | Tta | 6655 | 6335 | 0.951916 | 25654-25656 | |
ORF3a | 88 | V88L | nonsyn | Gta | Cta | 6655 | 319 | 0.0479339 | 25654-25656 | |
ORF3a | 88 | V88L | nonsyn | GtA | TtG | 6655 | 1 | 0.000150263 | 25654-25656 | |
ORF3a | 88 | V88V | syn | gtA | gtG | 568 | 529 | 0.931338 | 25654-25656 | |
ORF3a | 88 | V88V | syn | gtA | gtT | 568 | 28 | 0.0492958 | 25654-25656 | |
ORF3a | 88 | V88V | syn | gtA | gtC | 568 | 11 | 0.0193662 | 25654-25656 | |
ORF3a | 88 | V88A | nonsyn | gTa | gCa | 344 | 341 | 0.991279 | 25654-25656 | |
ORF3a | 88 | V88A | nonsyn | gTA | gCT | 344 | 2 | 0.00581395 | 25654-25656 | |
ORF3a | 88 | V88A | nonsyn | gTA | gCG | 344 | 1 | 0.00290698 | 25654-25656 | |
ORF3a | 88 | V88I | nonsyn | Gta | Ata | 330 | 329 | 0.99697 | 25654-25656 | |
ORF3a | 88 | V88I | nonsyn | GtA | AtT | 330 | 1 | 0.0030303 | 25654-25656 | |
ORF3a | 88 | V88del | del | GTA | --- | 174 | 174 | 1 | 25654-25656 | |
ORF3a | 88 | V88E | nonsyn | gTa | gAa | 14 | 13 | 0.928571 | 25654-25656 | |
ORF3a | 88 | V88E | nonsyn | gTA | gAG | 14 | 1 | 0.0714286 | 25654-25656 | |
ORF3a | 88 | V88G | nonsyn | gTa | gGa | 13 | 13 | 1 | 25654-25656 | |
ORF3a | 88 | V88F | nonsyn | GtA | TtT | 13 | 13 | 1 | 25654-25656 | |
ORF3a | 88 | V88del1 | del | Gta | -ta | 13 | 8 | 0.615385 | 25654-25656 | |
ORF3a | 88 | V88del1 | del | gtA | gt- | 13 | 4 | 0.307692 | 25654-25656 | |
ORF3a | 88 | V88del1 | del | GTA | -NN | 13 | 1 | 0.0769231 | 25654-25656 | |
ORF3a | 88 | V88S | nonsyn | GTa | TCa | 4 | 2 | 0.5 | 25654-25656 | |
ORF3a | 88 | V88S | nonsyn | GTA | TCT | 4 | 2 | 0.5 | 25654-25656 | |
ORF3a | 88 | V88Q | nonsyn | GTa | CAa | 3 | 3 | 1 | 25654-25656 | |
ORF3a | 88 | V88T | nonsyn | GTa | ACa | 2 | 2 | 1 | 25654-25656 | |
ORF3a | 88 | V88K | nonsyn | GTA | AAG | 2 | 1 | 0.5 | 25654-25656 | |
ORF3a | 88 | V88K | nonsyn | GTa | AAa | 2 | 1 | 0.5 | 25654-25656 | |
ORF3a | 88 | V88P | nonsyn | GTa | CCa | 1 | 1 | 1 | 25654-25656 | |
ORF3a | 88 | V88del2 | del | gTA | g-- | 1 | 1 | 1 | 25654-25656 | |
ORF3a | 88 | V88M | nonsyn | GtA | AtG | 1 | 1 | 1 | 25654-25656 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 88 | V88L | Gta | Tta | 6335 | 6655 | All | 0.001212 |
ORF3a | 88 | V88L | Gta | Cta | 319 | 6655 | All | 0.000061 |
ORF3a | 88 | V88L | GtA | TtG | 1 | 6655 | All | 0 |
ORF3a | 88 | V88L | Gta | Tta | 3133 | 3136 | AY.5 | 0.064694 |
ORF3a | 88 | V88L | Gta | Cta | 3 | 3136 | AY.5 | 0.000062 |
ORF3a | 88 | V88V | gtA | gtG | 529 | 568 | All | 0.000101 |
ORF3a | 88 | V88V | gtA | gtT | 28 | 568 | All | 0.000005 |
ORF3a | 88 | V88V | gtA | gtC | 11 | 568 | All | 0.000002 |
ORF3a | 88 | V88L | Gta | Tta | 402 | 448 | AY.4 | 0.000626 |
ORF3a | 88 | V88L | Gta | Cta | 46 | 448 | AY.4 | 0.000072 |
ORF3a | 88 | V88V | gtA | gtG | 372 | 374 | AY.4 | 0.000579 |
ORF3a | 88 | V88V | gtA | gtT | 2 | 374 | AY.4 | 0.000003 |
ORF3a | 88 | V88A | gTa | gCa | 341 | 344 | All | 0.000065 |
ORF3a | 88 | V88A | gTA | gCT | 2 | 344 | All | 0 |
ORF3a | 88 | V88A | gTA | gCG | 1 | 344 | All | 0 |
ORF3a | 88 | V88I | Gta | Ata | 329 | 330 | All | 0.000063 |
ORF3a | 88 | V88I | GtA | AtT | 1 | 330 | All | 0 |
ORF3a | 88 | V88L | Gta | Tta | 220 | 322 | B.1.1.7 | 0.000197 |
ORF3a | 88 | V88L | Gta | Cta | 102 | 322 | B.1.1.7 | 0.000091 |
ORF3a | 88 | V88L | Gta | Tta | 308 | 321 | AY.25 | 0.001853 |
ORF3a | 88 | V88L | Gta | Cta | 13 | 321 | AY.25 | 0.000078 |
ORF3a | 88 | V88L | Gta | Tta | 272 | 272 | B.1.243 | 0.018927 |
ORF3a | 88 | V88L | Gta | Tta | 162 | 185 | B.1.617.2 | 0.00061 |
ORF3a | 88 | V88L | Gta | Cta | 23 | 185 | B.1.617.2 | 0.000087 |
ORF3a | 88 | V88del | GTA | --- | 174 | 174 | All | 0.000033 |
ORF3a | 88 | V88L | Gta | Tta | 166 | 166 | AY.9.2 | 0.006097 |
ORF3a | 88 | V88L | Gta | Tta | 132 | 159 | B.1.2 | 0.001162 |
ORF3a | 88 | V88L | Gta | Cta | 27 | 159 | B.1.2 | 0.000238 |
ORF3a | 88 | V88A | gTa | gCa | 98 | 98 | AY.44 | 0.000597 |
ORF3a | 88 | V88L | Gta | Tta | 94 | 94 | P.1.7 | 0.030013 |
ORF3a | 88 | V88L | Gta | Tta | 86 | 86 | B.1.110.3 | 0.061782 |
ORF3a | 88 | V88L | Gta | Tta | 81 | 82 | AY.43 | 0.000359 |
ORF3a | 88 | V88L | Gta | Cta | 1 | 82 | AY.43 | 0.000004 |
ORF3a | 88 | V88L | Gta | Tta | 82 | 82 | AY.5.4 | 0.02269 |
ORF3a | 88 | V88L | Gta | Tta | 69 | 71 | B.1.429 | 0.001623 |
ORF3a | 88 | V88L | Gta | Cta | 2 | 71 | B.1.429 | 0.000047 |
ORF3a | 88 | V88A | gTa | gCa | 68 | 68 | B.30 | 1 |
ORF3a | 88 | V88L | Gta | Tta | 54 | 56 | AY.3 | 0.000537 |
ORF3a | 88 | V88L | Gta | Cta | 2 | 56 | AY.3 | 0.00002 |
ORF3a | 88 | V88L | Gta | Tta | 55 | 56 | B.1 | 0.000504 |
ORF3a | 88 | V88L | Gta | Cta | 1 | 56 | B.1 | 0.000009 |
ORF3a | 88 | V88I | Gta | Ata | 50 | 50 | B.1.1.7 | 0.000045 |
ORF3a | 88 | V88L | Gta | Tta | 40 | 49 | AY.103 | 0.000248 |
ORF3a | 88 | V88L | Gta | Cta | 9 | 49 | AY.103 | 0.000056 |
ORF3a | 88 | V88A | gTa | gCa | 47 | 47 | AY.4 | 0.000073 |
ORF3a | 88 | V88L | Gta | Tta | 40 | 46 | AY.102 | 0.001061 |
ORF3a | 88 | V88L | Gta | Cta | 6 | 46 | AY.102 | 0.000159 |
ORF3a | 88 | V88I | Gta | Ata | 44 | 44 | AY.44 | 0.000268 |
ORF3a | 88 | V88I | Gta | Ata | 43 | 43 | AY.5 | 0.000888 |
ORF3a | 88 | V88L | Gta | Cta | 31 | 42 | AY.5.3 | 0.010459 |
ORF3a | 88 | V88L | Gta | Tta | 11 | 42 | AY.5.3 | 0.003711 |
ORF3a | 88 | V88I | Gta | Ata | 41 | 41 | B.1.2 | 0.000361 |
ORF3a | 88 | V88L | Gta | Tta | 25 | 38 | AY.44 | 0.000152 |
ORF3a | 88 | V88L | Gta | Cta | 13 | 38 | AY.44 | 0.000079 |
ORF3a | 88 | V88L | Gta | Tta | 38 | 38 | B.1.147 | 0.028723 |
ORF3a | 88 | V88del | GTA | --- | 36 | 36 | B.1.1.7 | 0.000032 |
ORF3a | 88 | V88I | Gta | Ata | 35 | 35 | B.1.617.2 | 0.000132 |
ORF3a | 88 | V88I | Gta | Ata | 30 | 30 | AY.25 | 0.00018 |
ORF3a | 88 | V88V | gtA | gtG | 29 | 29 | AY.74 | 0.003354 |
ORF3a | 88 | V88L | Gta | Tta | 29 | 29 | B.1.177.17 | 0.02381 |
ORF3a | 88 | V88A | gTa | gCa | 26 | 26 | AY.46.6 | 0.001877 |
ORF3a | 88 | V88L | Gta | Tta | 24 | 24 | B.1.1.1 | 0.007841 |
ORF3a | 88 | V88L | Gta | Tta | 23 | 23 | AY.117 | 0.001944 |
ORF3a | 88 | V88L | Gta | Tta | 23 | 23 | P.1 | 0.000362 |
ORF3a | 88 | V88V | gtA | gtG | 20 | 22 | AY.26 | 0.000566 |
ORF3a | 88 | V88V | gtA | gtT | 2 | 22 | AY.26 | 0.000057 |
ORF3a | 88 | V88V | gtA | gtG | 17 | 22 | B.1.1.7 | 0.000015 |
ORF3a | 88 | V88V | gtA | gtT | 4 | 22 | B.1.1.7 | 0.000004 |
ORF3a | 88 | V88V | gtA | gtC | 1 | 22 | B.1.1.7 | 0.000001 |
ORF3a | 88 | V88del | GTA | --- | 21 | 21 | AY.4 | 0.000033 |
ORF3a | 88 | V88L | Gta | Tta | 21 | 21 | B.1.177 | 0.000277 |
ORF3a | 88 | V88L | Gta | Tta | 20 | 20 | B.1.192 | 0.185185 |
ORF3a | 88 | V88L | Gta | Tta | 19 | 19 | AY.23 | 0.001325 |
ORF3a | 88 | V88V | gtA | gtG | 16 | 18 | AY.3 | 0.000159 |
ORF3a | 88 | V88V | gtA | gtT | 2 | 18 | AY.3 | 0.00002 |
ORF3a | 88 | V88L | Gta | Tta | 18 | 18 | B.1.177.15 | 0.011356 |
ORF3a | 88 | V88L | Gta | Tta | 18 | 18 | B.1.189 | 0.077253 |
ORF3a | 88 | V88L | Gta | Tta | 18 | 18 | B.1.526 | 0.000423 |
ORF3a | 88 | V88L | Gta | Tta | 17 | 17 | AY.39 | 0.00042 |
ORF3a | 88 | V88L | Gta | Tta | 16 | 16 | B.1.1.256 | 0.219178 |
ORF3a | 88 | V88L | Gta | Tta | 14 | 16 | B.1.160 | 0.000437 |
ORF3a | 88 | V88L | Gta | Cta | 2 | 16 | B.1.160 | 0.000062 |
ORF3a | 88 | V88L | Gta | Tta | 15 | 15 | P.1.17 | 0.002426 |
ORF3a | 88 | V88E | gTa | gAa | 13 | 14 | All | 0.000002 |
ORF3a | 88 | V88E | gTA | gAG | 1 | 14 | All | 0 |
ORF3a | 88 | V88L | Gta | Tta | 14 | 14 | AY.20 | 0.000544 |
ORF3a | 88 | V88L | Gta | Tta | 13 | 14 | AY.26 | 0.000368 |
ORF3a | 88 | V88L | Gta | Cta | 1 | 14 | AY.26 | 0.000028 |
ORF3a | 88 | V88A | gTa | gCa | 14 | 14 | AY.6 | 0.000576 |
ORF3a | 88 | V88L | Gta | Tta | 13 | 14 | B.1.1 | 0.000236 |
ORF3a | 88 | V88L | Gta | Cta | 1 | 14 | B.1.1 | 0.000018 |
ORF3a | 88 | V88L | Gta | Tta | 14 | 14 | B.1.36 | 0.002043 |
ORF3a | 88 | V88L | Gta | Tta | 13 | 14 | R.1 | 0.00117 |
ORF3a | 88 | V88L | Gta | Cta | 1 | 14 | R.1 | 0.00009 |
ORF3a | 88 | V88F | GtA | TtT | 13 | 13 | All | 0.000002 |
ORF3a | 88 | V88G | gTa | gGa | 13 | 13 | All | 0.000002 |
ORF3a | 88 | V88del1 | Gta | -ta | 8 | 13 | All | 0.000002 |
ORF3a | 88 | V88del1 | gtA | gt- | 4 | 13 | All | 0.000001 |
ORF3a | 88 | V88del1 | GTA | -NN | 1 | 13 | All | 0 |
ORF3a | 88 | V88L | Gta | Tta | 11 | 13 | AY.29 | 0.000174 |
ORF3a | 88 | V88L | Gta | Cta | 2 | 13 | AY.29 | 0.000032 |
ORF3a | 88 | V88I | Gta | Ata | 13 | 13 | AY.4 | 0.00002 |
ORF3a | 88 | V88L | Gta | Tta | 13 | 13 | B.1.1.519 | 0.000516 |
ORF3a | 88 | V88L | Gta | Tta | 11 | 13 | B.1.621 | 0.000974 |
ORF3a | 88 | V88L | Gta | Cta | 2 | 13 | B.1.621 | 0.000177 |
ORF3a | 88 | V88L | Gta | Tta | 12 | 12 | AY.120 | 0.000446 |
ORF3a | 88 | V88L | Gta | Tta | 11 | 12 | AY.42 | 0.000443 |
ORF3a | 88 | V88L | Gta | Cta | 1 | 12 | AY.42 | 0.00004 |
ORF3a | 88 | V88L | Gta | Tta | 12 | 12 | AY.59 | 0.006356 |
ORF3a | 88 | V88L | Gta | Tta | 12 | 12 | AY.75 | 0.000672 |
ORF3a | 88 | V88L | Gta | Tta | 12 | 12 | B.1.258 | 0.000799 |
ORF3a | 88 | V88L | Gta | Tta | 12 | 12 | P.1.14 | 0.000574 |
ORF3a | 88 | V88L | Gta | Tta | 12 | 12 | Z.1 | 0.034682 |
ORF3a | 88 | V88V | gtA | gtG | 8 | 11 | AY.103 | 0.00005 |
ORF3a | 88 | V88V | gtA | gtT | 2 | 11 | AY.103 | 0.000012 |
ORF3a | 88 | V88V | gtA | gtC | 1 | 11 | AY.103 | 0.000006 |
ORF3a | 88 | V88L | Gta | Tta | 11 | 11 | B.1.1.433 | 0.01567 |
ORF3a | 88 | V88V | gtA | gtG | 11 | 11 | B.1.429 | 0.000259 |
ORF3a | 88 | V88V | gtA | gtT | 9 | 10 | AY.25 | 0.000054 |
ORF3a | 88 | V88V | gtA | gtG | 1 | 10 | AY.25 | 0.000006 |
ORF3a | 88 | V88A | gTa | gCa | 10 | 10 | AY.3 | 0.000099 |
ORF3a | 88 | V88L | Gta | Tta | 9 | 10 | AY.45 | 0.001095 |
ORF3a | 88 | V88L | Gta | Cta | 1 | 10 | AY.45 | 0.000122 |
ORF3a | 88 | V88L | Gta | Tta | 10 | 10 | B.1.1.316 | 0.009251 |
ORF3a | 88 | V88del | GTA | --- | 10 | 10 | B.1.177 | 0.000132 |
ORF3a | 88 | V88L | Gta | Tta | 10 | 10 | C.37 | 0.001161 |
ORF3a | 88 | V88L | Gta | Tta | 9 | 9 | AY.4.2 | 0.000195 |
ORF3a | 88 | V88A | gTa | gCa | 9 | 9 | B.1.177 | 0.000119 |
ORF3a | 88 | V88L | Gta | Tta | 8 | 8 | AY.114 | 0.001849 |
ORF3a | 88 | V88L | Gta | Tta | 8 | 8 | AY.4.2.1 | 0.001192 |
ORF3a | 88 | V88V | gtA | gtG | 8 | 8 | AY.43 | 0.000035 |
ORF3a | 88 | V88L | Gta | Tta | 7 | 8 | B.1.1.28 | 0.002179 |
ORF3a | 88 | V88L | Gta | Cta | 1 | 8 | B.1.1.28 | 0.000311 |
ORF3a | 88 | V88L | Gta | Tta | 8 | 8 | B.1.112 | 0.041451 |
ORF3a | 88 | V88del | GTA | --- | 8 | 8 | B.1.617.2 | 0.00003 |
ORF3a | 88 | V88G | gTa | gGa | 8 | 8 | B.1.617.2 | 0.00003 |
ORF3a | 88 | V88V | gtA | gtG | 7 | 8 | B.1.617.2 | 0.000026 |
ORF3a | 88 | V88V | gtA | gtC | 1 | 8 | B.1.617.2 | 0.000004 |
ORF3a | 88 | V88L | Gta | Tta | 8 | 8 | N.5 | 0.014134 |
ORF3a | 88 | V88L | Gta | Tta | 7 | 7 | AY.111 | 0.001282 |
ORF3a | 88 | V88F | GtA | TtT | 7 | 7 | AY.25 | 0.000042 |
ORF3a | 88 | V88L | Gta | Tta | 7 | 7 | AY.46.5 | 0.001389 |
ORF3a | 88 | V88L | Gta | Cta | 4 | 7 | AY.9 | 0.00027 |
ORF3a | 88 | V88L | Gta | Tta | 3 | 7 | AY.9 | 0.000203 |
ORF3a | 88 | V88L | Gta | Tta | 7 | 7 | B.1.1.222 | 0.001428 |
ORF3a | 88 | V88A | gTa | gCa | 7 | 7 | B.1.1.253 | 0.017544 |
ORF3a | 88 | V88A | gTa | gCa | 7 | 7 | B.1.1.7 | 0.000006 |
ORF3a | 88 | V88L | Gta | Tta | 7 | 7 | B.1.466.2 | 0.002739 |
ORF3a | 88 | V88A | gTa | gCa | 7 | 7 | B.1.617.2 | 0.000026 |
ORF3a | 88 | V88L | Gta | Tta | 6 | 6 | AY.113 | 0.000854 |
ORF3a | 88 | V88E | gTa | gAa | 6 | 6 | AY.16 | 0.002278 |
ORF3a | 88 | V88del | GTA | --- | 6 | 6 | AY.43 | 0.000027 |
ORF3a | 88 | V88L | Gta | Tta | 6 | 6 | AY.46 | 0.000624 |
ORF3a | 88 | V88L | Gta | Tta | 6 | 6 | AY.74 | 0.000694 |
ORF3a | 88 | V88L | Gta | Tta | 6 | 6 | B.1.1.317 | 0.00247 |
ORF3a | 88 | V88A | gTa | gCa | 6 | 6 | B.1.177.7 | 0.000989 |
ORF3a | 88 | V88L | Gta | Tta | 5 | 6 | B.1.351 | 0.000149 |
ORF3a | 88 | V88L | Gta | Cta | 1 | 6 | B.1.351 | 0.00003 |
ORF3a | 88 | V88L | Gta | Tta | 6 | 6 | B.1.525 | 0.000679 |
ORF3a | 88 | V88del | GTA | --- | 6 | 6 | B.1.525 | 0.000679 |
ORF3a | 88 | V88L | Gta | Tta | 4 | 5 | AY.119 | 0.000141 |
ORF3a | 88 | V88L | Gta | Cta | 1 | 5 | AY.119 | 0.000035 |
ORF3a | 88 | V88A | gTa | gCa | 3 | 5 | AY.25 | 0.000018 |
ORF3a | 88 | V88A | gTA | gCT | 2 | 5 | AY.25 | 0.000012 |
ORF3a | 88 | V88I | Gta | Ata | 5 | 5 | AY.26 | 0.000142 |
ORF3a | 88 | V88L | Gta | Tta | 5 | 5 | AY.34 | 0.000485 |
ORF3a | 88 | V88del | GTA | --- | 5 | 5 | AY.44 | 0.00003 |
ORF3a | 88 | V88L | Gta | Tta | 5 | 5 | AY.46.6 | 0.000361 |
ORF3a | 88 | V88V | gtA | gtG | 5 | 5 | AY.47 | 0.000156 |
ORF3a | 88 | V88L | Gta | Tta | 5 | 5 | AY.61 | 0.000524 |
ORF3a | 88 | V88L | Gta | Tta | 5 | 5 | B | 0.000639 |
ORF3a | 88 | V88I | Gta | Ata | 4 | 5 | B.1 | 0.000037 |
ORF3a | 88 | V88I | GtA | AtT | 1 | 5 | B.1 | 0.000009 |
ORF3a | 88 | V88L | Gta | Tta | 5 | 5 | B.1.160.7 | 0.010395 |
ORF3a | 88 | V88L | Gta | Cta | 5 | 5 | L.3 | 0.01773 |
ORF3a | 88 | V88S | GTA | TCT | 2 | 4 | All | 0 |
ORF3a | 88 | V88S | GTa | TCa | 2 | 4 | All | 0 |
ORF3a | 88 | V88L | Gta | Tta | 4 | 4 | AY.100 | 0.000184 |
ORF3a | 88 | V88V | gtA | gtC | 4 | 4 | AY.102 | 0.000106 |
ORF3a | 88 | V88del | GTA | --- | 4 | 4 | AY.103 | 0.000025 |
ORF3a | 88 | V88L | Gta | Tta | 4 | 4 | AY.116 | 0.001147 |
ORF3a | 88 | V88L | Gta | Tta | 4 | 4 | AY.12 | 0.001264 |
ORF3a | 88 | V88del | GTA | --- | 4 | 4 | AY.23 | 0.000279 |
ORF3a | 88 | V88S | GTa | TCa | 2 | 4 | AY.25 | 0.000012 |
ORF3a | 88 | V88S | GTA | TCT | 2 | 4 | AY.25 | 0.000012 |
ORF3a | 88 | V88del | GTA | --- | 4 | 4 | AY.29 | 0.000063 |
ORF3a | 88 | V88V | gtA | gtG | 2 | 4 | AY.29 | 0.000032 |
ORF3a | 88 | V88V | gtA | gtT | 2 | 4 | AY.29 | 0.000032 |
ORF3a | 88 | V88L | Gta | Cta | 3 | 4 | AY.33 | 0.0002 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 4 | AY.33 | 0.000067 |
ORF3a | 88 | V88I | Gta | Ata | 4 | 4 | AY.39 | 0.000099 |
ORF3a | 88 | V88L | Gta | Tta | 4 | 4 | AY.46.1 | 0.004107 |
ORF3a | 88 | V88L | Gta | Tta | 4 | 4 | AY.47 | 0.000124 |
ORF3a | 88 | V88I | Gta | Ata | 4 | 4 | AY.6 | 0.000165 |
ORF3a | 88 | V88L | Gta | Cta | 2 | 4 | AY.99 | 0.002099 |
ORF3a | 88 | V88L | Gta | Tta | 2 | 4 | AY.99 | 0.002099 |
ORF3a | 88 | V88A | gTa | gCa | 4 | 4 | B.1.1.220 | 0.007435 |
ORF3a | 88 | V88L | Gta | Tta | 4 | 4 | B.1.1.39 | 0.002039 |
ORF3a | 88 | V88L | Gta | Tta | 4 | 4 | B.1.110 | 0.0181 |
ORF3a | 88 | V88L | Gta | Tta | 4 | 4 | B.1.221 | 0.000284 |
ORF3a | 88 | V88L | Gta | Tta | 4 | 4 | B.1.396 | 0.002823 |
ORF3a | 88 | V88I | Gta | Ata | 4 | 4 | B.1.526 | 0.000094 |
ORF3a | 88 | V88I | Gta | Ata | 4 | 4 | P.1 | 0.000063 |
ORF3a | 88 | V88L | Gta | Tta | 4 | 4 | P.1.1 | 0.001271 |
ORF3a | 88 | V88L | Gta | Tta | 4 | 4 | Q.1 | 0.000505 |
ORF3a | 88 | V88I | Gta | Ata | 3 | 3 | A.2.5.1 | 0.014423 |
ORF3a | 88 | V88Q | GTa | CAa | 3 | 3 | All | 0.000001 |
ORF3a | 88 | V88del | GTA | --- | 3 | 3 | AY.102 | 0.00008 |
ORF3a | 88 | V88L | Gta | Tta | 3 | 3 | AY.118 | 0.000188 |
ORF3a | 88 | V88I | Gta | Ata | 3 | 3 | AY.119 | 0.000106 |
ORF3a | 88 | V88A | gTa | gCa | 3 | 3 | AY.121 | 0.000406 |
ORF3a | 88 | V88V | gtA | gtG | 2 | 3 | AY.23 | 0.000139 |
ORF3a | 88 | V88V | gtA | gtT | 1 | 3 | AY.23 | 0.00007 |
ORF3a | 88 | V88del | GTA | --- | 3 | 3 | AY.25 | 0.000018 |
ORF3a | 88 | V88A | gTa | gCa | 3 | 3 | AY.34 | 0.000291 |
ORF3a | 88 | V88L | Gta | Tta | 3 | 3 | AY.39.1 | 0.000119 |
ORF3a | 88 | V88I | Gta | Ata | 3 | 3 | AY.43 | 0.000013 |
ORF3a | 88 | V88V | gtA | gtG | 3 | 3 | AY.44 | 0.000018 |
ORF3a | 88 | V88L | Gta | Tta | 3 | 3 | AY.46.4 | 0.000494 |
ORF3a | 88 | V88I | Gta | Ata | 3 | 3 | AY.47 | 0.000093 |
ORF3a | 88 | V88L | Gta | Tta | 3 | 3 | AY.53 | 0.000863 |
ORF3a | 88 | V88L | Gta | Tta | 3 | 3 | AY.6 | 0.000123 |
ORF3a | 88 | V88L | Gta | Tta | 3 | 3 | AY.68 | 0.000821 |
ORF3a | 88 | V88L | Gta | Tta | 3 | 3 | AY.7.1 | 0.000338 |
ORF3a | 88 | V88L | Gta | Tta | 3 | 3 | AY.9.1 | 0.000251 |
ORF3a | 88 | V88L | Gta | Tta | 3 | 3 | AY.92 | 0.000862 |
ORF3a | 88 | V88L | Gta | Tta | 2 | 3 | AY.98 | 0.000158 |
ORF3a | 88 | V88L | Gta | Cta | 1 | 3 | AY.98 | 0.000079 |
ORF3a | 88 | V88V | gtA | gtG | 3 | 3 | AY.98.1 | 0.000145 |
ORF3a | 88 | V88del | GTA | --- | 3 | 3 | B.1 | 0.000027 |
ORF3a | 88 | V88L | Gta | Tta | 3 | 3 | B.1.1.305 | 0.011583 |
ORF3a | 88 | V88V | gtA | gtG | 3 | 3 | B.1.160 | 0.000094 |
ORF3a | 88 | V88L | Gta | Cta | 2 | 3 | B.1.234 | 0.000264 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 3 | B.1.234 | 0.000132 |
ORF3a | 88 | V88V | gtA | gtG | 3 | 3 | B.1.258.17 | 0.000312 |
ORF3a | 88 | V88L | Gta | Tta | 3 | 3 | B.1.409 | 0.002344 |
ORF3a | 88 | V88L | Gta | Tta | 3 | 3 | B.1.552 | 0.045455 |
ORF3a | 88 | V88L | Gta | Tta | 3 | 3 | B.1.595 | 0.000783 |
ORF3a | 88 | V88I | Gta | Ata | 3 | 3 | B.1.596 | 0.000261 |
ORF3a | 88 | V88L | Gta | Tta | 3 | 3 | B.1.81 | 0.06383 |
ORF3a | 88 | V88L | GtA | TtG | 1 | 2 | 0.055556 | |
ORF3a | 88 | V88L | Gta | Tta | 1 | 2 | 0.055556 | |
ORF3a | 88 | V88del | GTA | --- | 2 | 2 | A | 0.000774 |
ORF3a | 88 | V88L | Gta | Tta | 2 | 2 | AD.2 | 0.000438 |
ORF3a | 88 | V88T | GTa | ACa | 2 | 2 | All | 0 |
ORF3a | 88 | V88K | GTA | AAG | 1 | 2 | All | 0 |
ORF3a | 88 | V88K | GTa | AAa | 1 | 2 | All | 0 |
ORF3a | 88 | V88V | gtA | gtT | 2 | 2 | AY.1 | 0.000791 |
ORF3a | 88 | V88del | GTA | --- | 2 | 2 | AY.100 | 0.000092 |
ORF3a | 88 | V88I | Gta | Ata | 2 | 2 | AY.102 | 0.000053 |
ORF3a | 88 | V88A | gTa | gCa | 2 | 2 | AY.103 | 0.000012 |
ORF3a | 88 | V88L | Gta | Tta | 2 | 2 | AY.106 | 0.00067 |
ORF3a | 88 | V88del | GTA | --- | 2 | 2 | AY.117 | 0.000169 |
ORF3a | 88 | V88L | Gta | Cta | 2 | 2 | AY.16 | 0.000759 |
ORF3a | 88 | V88L | Gta | Tta | 2 | 2 | AY.16.1 | 0.00094 |
ORF3a | 88 | V88E | gTa | gAa | 2 | 2 | AY.26 | 0.000057 |
ORF3a | 88 | V88I | Gta | Ata | 2 | 2 | AY.3 | 0.00002 |
ORF3a | 88 | V88L | Gta | Tta | 2 | 2 | AY.3.1 | 0.000171 |
ORF3a | 88 | V88L | Gta | Tta | 2 | 2 | AY.36 | 0.000296 |
ORF3a | 88 | V88I | Gta | Ata | 2 | 2 | AY.4.2 | 0.000043 |
ORF3a | 88 | V88L | Gta | Tta | 2 | 2 | AY.4.4 | 0.000818 |
ORF3a | 88 | V88del | GTA | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 2 | AY.4.5 | 0.000107 |
ORF3a | 88 | V88L | Gta | Cta | 1 | 2 | AY.4.5 | 0.000107 |
ORF3a | 88 | V88A | gTa | gCa | 2 | 2 | AY.5 | 0.000041 |
ORF3a | 88 | V88L | Gta | Tta | 2 | 2 | AY.58 | 0.001815 |
ORF3a | 88 | V88L | Gta | Cta | 1 | 2 | AY.67 | 0.000464 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 2 | AY.67 | 0.000464 |
ORF3a | 88 | V88L | Gta | Tta | 2 | 2 | AY.70 | 0.000417 |
ORF3a | 88 | V88del | GTA | --- | 2 | 2 | AY.75 | 0.000112 |
ORF3a | 88 | V88L | Gta | Tta | 2 | 2 | AY.75.1 | 0.000361 |
ORF3a | 88 | V88L | Gta | Tta | 2 | 2 | AY.85 | 0.000854 |
ORF3a | 88 | V88I | Gta | Ata | 2 | 2 | AY.9.1 | 0.000167 |
ORF3a | 88 | V88L | Gta | Tta | 2 | 2 | AY.99.2 | 0.000184 |
ORF3a | 88 | V88G | gTa | gGa | 2 | 2 | B.1 | 0.000018 |
ORF3a | 88 | V88del | GTA | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF3a | 88 | V88L | Gta | Tta | 2 | 2 | B.1.1.214 | 0.000111 |
ORF3a | 88 | V88L | Gta | Tta | 2 | 2 | B.1.1.216 | 0.001781 |
ORF3a | 88 | V88L | Gta | Tta | 2 | 2 | B.1.1.25 | 0.001137 |
ORF3a | 88 | V88L | Gta | Tta | 2 | 2 | B.1.1.434 | 0.000697 |
ORF3a | 88 | V88F | GtA | TtT | 2 | 2 | B.1.1.7 | 0.000002 |
ORF3a | 88 | V88del1 | Gta | -ta | 1 | 2 | B.1.1.7 | 0.000001 |
ORF3a | 88 | V88del1 | gtA | gt- | 1 | 2 | B.1.1.7 | 0.000001 |
ORF3a | 88 | V88L | Gta | Tta | 2 | 2 | B.1.146 | 0.008475 |
ORF3a | 88 | V88del | GTA | --- | 2 | 2 | B.1.160 | 0.000062 |
ORF3a | 88 | V88I | Gta | Ata | 2 | 2 | B.1.160 | 0.000062 |
ORF3a | 88 | V88L | Gta | Tta | 2 | 2 | B.1.177.45 | 0.000762 |
ORF3a | 88 | V88del | GTA | --- | 2 | 2 | B.1.177.60 | 0.000437 |
ORF3a | 88 | V88L | Gta | Tta | 2 | 2 | B.1.177.9 | 0.002663 |
ORF3a | 88 | V88L | Gta | Tta | 2 | 2 | B.1.221.2 | 0.008032 |
ORF3a | 88 | V88L | Gta | Tta | 2 | 2 | B.1.3 | 0.005236 |
ORF3a | 88 | V88L | Gta | Tta | 2 | 2 | B.1.36.1 | 0.002281 |
ORF3a | 88 | V88L | Gta | Tta | 2 | 2 | B.1.380 | 0.013245 |
ORF3a | 88 | V88I | Gta | Ata | 2 | 2 | B.1.398 | 0.005952 |
ORF3a | 88 | V88L | Gta | Tta | 2 | 2 | B.1.400 | 0.000858 |
ORF3a | 88 | V88L | Gta | Tta | 2 | 2 | B.1.404 | 0.002604 |
ORF3a | 88 | V88L | Gta | Tta | 2 | 2 | B.1.427 | 0.000101 |
ORF3a | 88 | V88A | gTa | gCa | 2 | 2 | B.1.429 | 0.000047 |
ORF3a | 88 | V88L | Gta | Tta | 2 | 2 | B.1.438.1 | 0.000215 |
ORF3a | 88 | V88I | Gta | Ata | 2 | 2 | B.1.509 | 0.001732 |
ORF3a | 88 | V88A | gTa | gCa | 2 | 2 | B.1.561 | 0.000794 |
ORF3a | 88 | V88L | Gta | Tta | 2 | 2 | B.1.576 | 0.001813 |
ORF3a | 88 | V88E | gTA | gAG | 1 | 2 | B.1.576 | 0.000907 |
ORF3a | 88 | V88E | gTa | gAa | 1 | 2 | B.1.576 | 0.000907 |
ORF3a | 88 | V88K | GTa | AAa | 1 | 2 | B.1.576 | 0.000907 |
ORF3a | 88 | V88K | GTA | AAG | 1 | 2 | B.1.576 | 0.000907 |
ORF3a | 88 | V88del | GTA | --- | 2 | 2 | B.1.596 | 0.000174 |
ORF3a | 88 | V88L | Gta | Tta | 2 | 2 | B.1.596 | 0.000174 |
ORF3a | 88 | V88L | Gta | Tta | 2 | 2 | C.18 | 0.005181 |
ORF3a | 88 | V88L | Gta | Tta | 2 | 2 | C.36 | 0.001821 |
ORF3a | 88 | V88A | gTa | gCa | 2 | 2 | P.1 | 0.000032 |
ORF3a | 88 | V88del1 | gtA | gt- | 2 | 2 | P.1 | 0.000032 |
ORF3a | 88 | V88del | GTA | --- | 2 | 2 | P.1.15 | 0.000465 |
ORF3a | 88 | V88L | Gta | Tta | 2 | 2 | P.2 | 0.000373 |
ORF3a | 88 | V88del | GTA | --- | 2 | 2 | U.3 | 0.007722 |
ORF3a | 88 | V88V | gtA | gtG | 1 | 1 | 0.055556 | |
ORF3a | 88 | V88del1 | GTA | -NN | 1 | 1 | A | 0.000387 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | A.2.5.1 | 0.004808 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | A.27 | 0.001656 |
ORF3a | 88 | V88V | gtA | gtG | 1 | 1 | AD.2 | 0.000219 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | AH.3 | 0.003802 |
ORF3a | 88 | V88M | GtA | AtG | 1 | 1 | All | 0 |
ORF3a | 88 | V88del2 | gTA | g-- | 1 | 1 | All | 0 |
ORF3a | 88 | V88P | GTa | CCa | 1 | 1 | All | 0 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | AV.1 | 0.005051 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | AY.1 | 0.000396 |
ORF3a | 88 | V88A | gTa | gCa | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 88 | V88G | gTa | gGa | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 88 | V88A | gTa | gCa | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 88 | V88F | GtA | TtT | 1 | 1 | AY.103 | 0.000006 |
ORF3a | 88 | V88I | Gta | Ata | 1 | 1 | AY.103 | 0.000006 |
ORF3a | 88 | V88Q | GTa | CAa | 1 | 1 | AY.103 | 0.000006 |
ORF3a | 88 | V88V | gtA | gtG | 1 | 1 | AY.107 | 0.000466 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | AY.108 | 0.001103 |
ORF3a | 88 | V88I | Gta | Ata | 1 | 1 | AY.109 | 0.00074 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | AY.109 | 0.00074 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 88 | V88V | gtA | gtC | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | AY.116.1 | 0.000311 |
ORF3a | 88 | V88A | gTa | gCa | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 88 | V88A | gTa | gCa | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 88 | V88V | gtA | gtG | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 88 | V88A | gTa | gCa | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF3a | 88 | V88L | Gta | Cta | 1 | 1 | AY.121 | 0.000135 |
ORF3a | 88 | V88I | Gta | Ata | 1 | 1 | AY.121 | 0.000135 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | AY.13 | 0.000161 |
ORF3a | 88 | V88del1 | Gta | -ta | 1 | 1 | AY.16 | 0.00038 |
ORF3a | 88 | V88I | Gta | Ata | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 88 | V88A | gTa | gCa | 1 | 1 | AY.24 | 0.000431 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | AY.24 | 0.000431 |
ORF3a | 88 | V88E | gTa | gAa | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 88 | V88F | GtA | TtT | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 88 | V88del1 | Gta | -ta | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 88 | V88A | gTa | gCa | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 88 | V88E | gTa | gAa | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 88 | V88I | Gta | Ata | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 88 | V88del1 | Gta | -ta | 1 | 1 | AY.29.1 | 0.000221 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 88 | V88F | GtA | TtT | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | AY.3.1 | 0.000085 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 88 | V88del1 | Gta | -ta | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | AY.35 | 0.000233 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | AY.36 | 0.000148 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | AY.37 | 0.000316 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | AY.37 | 0.000316 |
ORF3a | 88 | V88A | gTa | gCa | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 88 | V88I | Gta | Ata | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 88 | V88del2 | gTA | g-- | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 88 | V88del1 | Gta | -ta | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 88 | V88A | gTa | gCa | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 88 | V88V | gtA | gtG | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 88 | V88V | gtA | gtG | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 88 | V88del1 | Gta | -ta | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 88 | V88I | Gta | Ata | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 88 | V88V | gtA | gtG | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF3a | 88 | V88I | Gta | Ata | 1 | 1 | AY.46.2 | 0.000635 |
ORF3a | 88 | V88P | GTa | CCa | 1 | 1 | AY.46.2 | 0.000635 |
ORF3a | 88 | V88I | Gta | Ata | 1 | 1 | AY.46.4 | 0.000165 |
ORF3a | 88 | V88V | gtA | gtG | 1 | 1 | AY.46.4 | 0.000165 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | AY.46.4 | 0.000165 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | AY.47 | 0.000031 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | AY.48 | 0.000465 |
ORF3a | 88 | V88A | gTa | gCa | 1 | 1 | AY.54 | 0.000095 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | AY.54 | 0.000095 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | AY.54 | 0.000095 |
ORF3a | 88 | V88V | gtA | gtG | 1 | 1 | AY.55 | 0.000917 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | AY.58 | 0.000907 |
ORF3a | 88 | V88A | gTa | gCa | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 88 | V88I | Gta | Ata | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | AY.62 | 0.000436 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | AY.62 | 0.000436 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | AY.65 | 0.000533 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | AY.69 | 0.000187 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | AY.71 | 0.000475 |
ORF3a | 88 | V88V | gtA | gtC | 1 | 1 | AY.72 | 0.001361 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | AY.74 | 0.000116 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | AY.76 | 0.004831 |
ORF3a | 88 | V88I | Gta | Ata | 1 | 1 | AY.79 | 0.001211 |
ORF3a | 88 | V88A | gTa | gCa | 1 | 1 | AY.89 | 0.004902 |
ORF3a | 88 | V88V | gtA | gtG | 1 | 1 | AY.9.1 | 0.000084 |
ORF3a | 88 | V88A | gTA | gCG | 1 | 1 | AY.9.2 | 0.000037 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | AY.93 | 0.000273 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | AY.95 | 0.000761 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | AY.96 | 0.002075 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | AY.99.1 | 0.001553 |
ORF3a | 88 | V88A | gTa | gCa | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | B | 0.000128 |
ORF3a | 88 | V88Q | GTa | CAa | 1 | 1 | B.1 | 0.000009 |
ORF3a | 88 | V88A | gTa | gCa | 1 | 1 | B.1 | 0.000009 |
ORF3a | 88 | V88E | gTa | gAa | 1 | 1 | B.1 | 0.000009 |
ORF3a | 88 | V88G | gTa | gGa | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 88 | V88A | gTa | gCa | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 88 | V88I | Gta | Ata | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 88 | V88V | gtA | gtT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.1.111 | 0.014706 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.1.273 | 0.006757 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.1.279 | 0.001121 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.1.291 | 0.000742 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.1.306 | 0.000438 |
ORF3a | 88 | V88A | gTa | gCa | 1 | 1 | B.1.1.306 | 0.000438 |
ORF3a | 88 | V88V | gtA | gtG | 1 | 1 | B.1.1.316 | 0.000925 |
ORF3a | 88 | V88L | Gta | Cta | 1 | 1 | B.1.1.318 | 0.000302 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.1.326 | 0.001761 |
ORF3a | 88 | V88L | Gta | Cta | 1 | 1 | B.1.1.348 | 0.000796 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.1.372 | 0.000689 |
ORF3a | 88 | V88A | gTa | gCa | 1 | 1 | B.1.1.386 | 0.066667 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | B.1.1.420 | 0.001006 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | B.1.1.434 | 0.000349 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.1.448 | 0.002033 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.1.50 | 0.000679 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.1.521 | 0.005348 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.1.526 | 0.003546 |
ORF3a | 88 | V88I | Gta | Ata | 1 | 1 | B.1.1.63 | 0.000386 |
ORF3a | 88 | V88G | gTa | gGa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 88 | V88Q | GTa | CAa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 88 | V88E | gTa | gAa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.111 | 0.001175 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.139 | 0.000733 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.160.12 | 0.00641 |
ORF3a | 88 | V88V | gtA | gtC | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.177.12 | 0.000152 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.177.21 | 0.000076 |
ORF3a | 88 | V88del1 | gtA | gt- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF3a | 88 | V88I | Gta | Ata | 1 | 1 | B.1.177.5 | 0.001242 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.177.61 | 0.043478 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.177.7 | 0.000165 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.177.87 | 0.000728 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 88 | V88V | gtA | gtG | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 88 | V88V | gtA | gtG | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | B.1.234 | 0.000132 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.258.17 | 0.000104 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.298 | 0.002114 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.311 | 0.000275 |
ORF3a | 88 | V88T | GTa | ACa | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | B.1.351.2 | 0.000303 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.356 | 0.001727 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.36.17 | 0.000494 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.36.8 | 0.001 |
ORF3a | 88 | V88I | Gta | Ata | 1 | 1 | B.1.36.8 | 0.001 |
ORF3a | 88 | V88V | gtA | gtG | 1 | 1 | B.1.36.9 | 0.003215 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | B.1.362 | 0.001541 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.369 | 0.000285 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.377 | 0.004566 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.416.1 | 0.001563 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.429.1 | 0.012048 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.437 | 0.020833 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.459 | 0.004082 |
ORF3a | 88 | V88L | Gta | Cta | 1 | 1 | B.1.468 | 0.005714 |
ORF3a | 88 | V88A | gTa | gCa | 1 | 1 | B.1.509 | 0.000866 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.524 | 0.001406 |
ORF3a | 88 | V88V | gtA | gtT | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 88 | V88F | GtA | TtT | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 88 | V88V | gtA | gtG | 1 | 1 | B.1.526 | 0.000024 |
ORF3a | 88 | V88del1 | Gta | -ta | 1 | 1 | B.1.526 | 0.000024 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.536 | 0.02381 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.565 | 0.00081 |
ORF3a | 88 | V88V | gtA | gtG | 1 | 1 | B.1.576 | 0.000907 |
ORF3a | 88 | V88I | Gta | Ata | 1 | 1 | B.1.576 | 0.000907 |
ORF3a | 88 | V88M | GtA | AtG | 1 | 1 | B.1.576 | 0.000907 |
ORF3a | 88 | V88L | Gta | Cta | 1 | 1 | B.1.588 | 0.00091 |
ORF3a | 88 | V88T | GTa | ACa | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.599 | 0.00365 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.609 | 0.000479 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 88 | V88I | Gta | Ata | 1 | 1 | B.1.621 | 0.000089 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | B.1.627 | 0.00202 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | B.1.631 | 0.003367 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.637 | 0.000073 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.1.9.5 | 0.005682 |
ORF3a | 88 | V88I | Gta | Ata | 1 | 1 | B.11 | 0.005128 |
ORF3a | 88 | V88V | gtA | gtG | 1 | 1 | B.37 | 0.028571 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | B.38 | 0.02381 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | C.36.3 | 0.000567 |
ORF3a | 88 | V88V | gtA | gtG | 1 | 1 | C.37 | 0.000116 |
ORF3a | 88 | V88A | gTa | gCa | 1 | 1 | D.2 | 0.000075 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | D.2 | 0.000075 |
ORF3a | 88 | V88V | gtA | gtC | 1 | 1 | D.2 | 0.000075 |
ORF3a | 88 | V88V | gtA | gtG | 1 | 1 | P.1 | 0.000016 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | P.1.12 | 0.000484 |
ORF3a | 88 | V88I | Gta | Ata | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 88 | V88L | Gta | Tta | 1 | 1 | Q.4 | 0.000455 |
ORF3a | 88 | V88del | GTA | --- | 1 | 1 | Q.4 | 0.000455 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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