CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 84 | L84L | syn | ctG | ctT | 11426 | 8428 | 0.737616 | 25642-25644 | |
ORF3a | 84 | L84L | syn | Ctg | Ttg | 11426 | 1789 | 0.156573 | 25642-25644 | |
ORF3a | 84 | L84L | syn | ctG | ctA | 11426 | 967 | 0.0846315 | 25642-25644 | |
ORF3a | 84 | L84L | syn | ctG | ctC | 11426 | 242 | 0.0211798 | 25642-25644 | |
ORF3a | 84 | L84M | nonsyn | Ctg | Atg | 127 | 127 | 1 | 25642-25644 | |
ORF3a | 84 | L84del | del | CTG | --- | 75 | 75 | 1 | 25642-25644 | |
ORF3a | 84 | L84V | nonsyn | Ctg | Gtg | 53 | 52 | 0.981132 | 25642-25644 | |
ORF3a | 84 | L84V | nonsyn | CtG | GtT | 53 | 1 | 0.0188679 | 25642-25644 | |
ORF3a | 84 | L84P | nonsyn | cTg | cCg | 46 | 46 | 1 | 25642-25644 | |
ORF3a | 84 | L84F | nonsyn | CtG | TtT | 24 | 24 | 1 | 25642-25644 | |
ORF3a | 84 | L84Q | nonsyn | cTg | cAg | 13 | 12 | 0.923077 | 25642-25644 | |
ORF3a | 84 | L84Q | nonsyn | cTG | cAA | 13 | 1 | 0.0769231 | 25642-25644 | |
ORF3a | 84 | L84del1 | del | ctG | ct- | 11 | 9 | 0.818182 | 25642-25644 | |
ORF3a | 84 | L84del1 | del | Ctg | -tg | 11 | 1 | 0.0909091 | 25642-25644 | |
ORF3a | 84 | L84del1 | del | cTg | c-g | 11 | 1 | 0.0909091 | 25642-25644 | |
ORF3a | 84 | L84del2 | del | cTG | c-- | 8 | 5 | 0.625 | 25642-25644 | |
ORF3a | 84 | L84del2 | del | CTG | T-- | 8 | 3 | 0.375 | 25642-25644 | |
ORF3a | 84 | L84R | nonsyn | cTg | cGg | 4 | 2 | 0.5 | 25642-25644 | |
ORF3a | 84 | L84R | nonsyn | cTG | cGC | 4 | 1 | 0.25 | 25642-25644 | |
ORF3a | 84 | L84R | nonsyn | CTg | AGg | 4 | 1 | 0.25 | 25642-25644 | |
ORF3a | 84 | L84I | nonsyn | CtG | AtC | 1 | 1 | 1 | 25642-25644 | |
ORF3a | 84 | L84S | nonsyn | CTG | AGC | 1 | 1 | 1 | 25642-25644 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 84 | L84L | ctG | ctT | 8428 | 11426 | All | 0.001612 |
ORF3a | 84 | L84L | Ctg | Ttg | 1789 | 11426 | All | 0.000342 |
ORF3a | 84 | L84L | ctG | ctA | 967 | 11426 | All | 0.000185 |
ORF3a | 84 | L84L | ctG | ctC | 242 | 11426 | All | 0.000046 |
ORF3a | 84 | L84L | ctG | ctT | 4238 | 5428 | B.1.1.7 | 0.003794 |
ORF3a | 84 | L84L | ctG | ctA | 652 | 5428 | B.1.1.7 | 0.000584 |
ORF3a | 84 | L84L | Ctg | Ttg | 477 | 5428 | B.1.1.7 | 0.000427 |
ORF3a | 84 | L84L | ctG | ctC | 61 | 5428 | B.1.1.7 | 0.000055 |
ORF3a | 84 | L84L | ctG | ctT | 353 | 524 | B.1.617.2 | 0.001329 |
ORF3a | 84 | L84L | Ctg | Ttg | 125 | 524 | B.1.617.2 | 0.000471 |
ORF3a | 84 | L84L | ctG | ctA | 44 | 524 | B.1.617.2 | 0.000166 |
ORF3a | 84 | L84L | ctG | ctC | 2 | 524 | B.1.617.2 | 0.000008 |
ORF3a | 84 | L84L | ctG | ctT | 461 | 464 | AY.9 | 0.031161 |
ORF3a | 84 | L84L | Ctg | Ttg | 3 | 464 | AY.9 | 0.000203 |
ORF3a | 84 | L84L | ctG | ctT | 233 | 412 | AY.4 | 0.000363 |
ORF3a | 84 | L84L | Ctg | Ttg | 126 | 412 | AY.4 | 0.000196 |
ORF3a | 84 | L84L | ctG | ctA | 35 | 412 | AY.4 | 0.000054 |
ORF3a | 84 | L84L | ctG | ctC | 18 | 412 | AY.4 | 0.000028 |
ORF3a | 84 | L84L | ctG | ctT | 335 | 336 | AY.105 | 0.215434 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 336 | AY.105 | 0.000643 |
ORF3a | 84 | L84L | ctG | ctT | 224 | 292 | AY.43 | 0.000992 |
ORF3a | 84 | L84L | Ctg | Ttg | 53 | 292 | AY.43 | 0.000235 |
ORF3a | 84 | L84L | ctG | ctC | 10 | 292 | AY.43 | 0.000044 |
ORF3a | 84 | L84L | ctG | ctA | 5 | 292 | AY.43 | 0.000022 |
ORF3a | 84 | L84L | ctG | ctT | 158 | 198 | AY.25 | 0.00095 |
ORF3a | 84 | L84L | Ctg | Ttg | 31 | 198 | AY.25 | 0.000186 |
ORF3a | 84 | L84L | ctG | ctA | 9 | 198 | AY.25 | 0.000054 |
ORF3a | 84 | L84L | Ctg | Ttg | 68 | 193 | B.1.2 | 0.000599 |
ORF3a | 84 | L84L | ctG | ctT | 62 | 193 | B.1.2 | 0.000546 |
ORF3a | 84 | L84L | ctG | ctC | 51 | 193 | B.1.2 | 0.000449 |
ORF3a | 84 | L84L | ctG | ctA | 12 | 193 | B.1.2 | 0.000106 |
ORF3a | 84 | L84L | ctG | ctT | 132 | 139 | B.1.429 | 0.003106 |
ORF3a | 84 | L84L | Ctg | Ttg | 5 | 139 | B.1.429 | 0.000118 |
ORF3a | 84 | L84L | ctG | ctA | 2 | 139 | B.1.429 | 0.000047 |
ORF3a | 84 | L84L | Ctg | Ttg | 100 | 137 | B.1.177 | 0.001317 |
ORF3a | 84 | L84L | ctG | ctC | 24 | 137 | B.1.177 | 0.000316 |
ORF3a | 84 | L84L | ctG | ctT | 11 | 137 | B.1.177 | 0.000145 |
ORF3a | 84 | L84L | ctG | ctA | 2 | 137 | B.1.177 | 0.000026 |
ORF3a | 84 | L84L | ctG | ctT | 132 | 132 | AY.50 | 0.105516 |
ORF3a | 84 | L84L | ctG | ctT | 116 | 131 | B.1.160 | 0.003618 |
ORF3a | 84 | L84L | Ctg | Ttg | 9 | 131 | B.1.160 | 0.000281 |
ORF3a | 84 | L84L | ctG | ctA | 6 | 131 | B.1.160 | 0.000187 |
ORF3a | 84 | L84M | Ctg | Atg | 127 | 127 | All | 0.000024 |
ORF3a | 84 | L84L | ctG | ctT | 124 | 126 | AY.114 | 0.028657 |
ORF3a | 84 | L84L | Ctg | Ttg | 2 | 126 | AY.114 | 0.000462 |
ORF3a | 84 | L84L | ctG | ctT | 95 | 126 | AY.44 | 0.000578 |
ORF3a | 84 | L84L | Ctg | Ttg | 19 | 126 | AY.44 | 0.000116 |
ORF3a | 84 | L84L | ctG | ctA | 10 | 126 | AY.44 | 0.000061 |
ORF3a | 84 | L84L | ctG | ctC | 2 | 126 | AY.44 | 0.000012 |
ORF3a | 84 | L84L | ctG | ctT | 82 | 117 | B.1 | 0.000751 |
ORF3a | 84 | L84L | Ctg | Ttg | 21 | 117 | B.1 | 0.000192 |
ORF3a | 84 | L84L | ctG | ctA | 12 | 117 | B.1 | 0.00011 |
ORF3a | 84 | L84L | ctG | ctC | 2 | 117 | B.1 | 0.000018 |
ORF3a | 84 | L84L | ctG | ctT | 85 | 108 | B.1.1 | 0.001542 |
ORF3a | 84 | L84L | Ctg | Ttg | 23 | 108 | B.1.1 | 0.000417 |
ORF3a | 84 | L84L | ctG | ctT | 75 | 99 | P.1 | 0.001182 |
ORF3a | 84 | L84L | Ctg | Ttg | 17 | 99 | P.1 | 0.000268 |
ORF3a | 84 | L84L | ctG | ctA | 6 | 99 | P.1 | 0.000095 |
ORF3a | 84 | L84L | ctG | ctC | 1 | 99 | P.1 | 0.000016 |
ORF3a | 84 | L84L | ctG | ctT | 75 | 92 | AY.3 | 0.000746 |
ORF3a | 84 | L84L | Ctg | Ttg | 11 | 92 | AY.3 | 0.000109 |
ORF3a | 84 | L84L | ctG | ctA | 6 | 92 | AY.3 | 0.00006 |
ORF3a | 84 | L84L | ctG | ctT | 58 | 89 | AY.103 | 0.00036 |
ORF3a | 84 | L84L | Ctg | Ttg | 26 | 89 | AY.103 | 0.000161 |
ORF3a | 84 | L84L | ctG | ctA | 5 | 89 | AY.103 | 0.000031 |
ORF3a | 84 | L84L | ctG | ctT | 46 | 78 | AY.102 | 0.00122 |
ORF3a | 84 | L84L | Ctg | Ttg | 18 | 78 | AY.102 | 0.000477 |
ORF3a | 84 | L84L | ctG | ctA | 11 | 78 | AY.102 | 0.000292 |
ORF3a | 84 | L84L | ctG | ctC | 3 | 78 | AY.102 | 0.00008 |
ORF3a | 84 | L84del | CTG | --- | 75 | 75 | All | 0.000014 |
ORF3a | 84 | L84L | ctG | ctT | 53 | 75 | AY.33 | 0.003539 |
ORF3a | 84 | L84L | ctG | ctA | 20 | 75 | AY.33 | 0.001336 |
ORF3a | 84 | L84L | Ctg | Ttg | 2 | 75 | AY.33 | 0.000134 |
ORF3a | 84 | L84L | Ctg | Ttg | 73 | 73 | B.1.177.81 | 0.013821 |
ORF3a | 84 | L84L | ctG | ctT | 53 | 67 | AY.9.2 | 0.001947 |
ORF3a | 84 | L84L | ctG | ctA | 11 | 67 | AY.9.2 | 0.000404 |
ORF3a | 84 | L84L | Ctg | Ttg | 2 | 67 | AY.9.2 | 0.000073 |
ORF3a | 84 | L84L | ctG | ctC | 1 | 67 | AY.9.2 | 0.000037 |
ORF3a | 84 | L84L | Ctg | Ttg | 57 | 66 | AY.120 | 0.002119 |
ORF3a | 84 | L84L | ctG | ctT | 8 | 66 | AY.120 | 0.000297 |
ORF3a | 84 | L84L | ctG | ctA | 1 | 66 | AY.120 | 0.000037 |
ORF3a | 84 | L84L | ctG | ctT | 59 | 62 | AY.7.1 | 0.006649 |
ORF3a | 84 | L84L | Ctg | Ttg | 3 | 62 | AY.7.1 | 0.000338 |
ORF3a | 84 | L84L | ctG | ctT | 50 | 62 | B.1.1.519 | 0.001986 |
ORF3a | 84 | L84L | Ctg | Ttg | 9 | 62 | B.1.1.519 | 0.000357 |
ORF3a | 84 | L84L | ctG | ctA | 3 | 62 | B.1.1.519 | 0.000119 |
ORF3a | 84 | L84M | Ctg | Atg | 55 | 55 | B.1.438.1 | 0.005899 |
ORF3a | 84 | L84L | ctG | ctT | 53 | 54 | AY.4.2 | 0.00115 |
ORF3a | 84 | L84L | ctG | ctA | 1 | 54 | AY.4.2 | 0.000022 |
ORF3a | 84 | L84V | Ctg | Gtg | 52 | 53 | All | 0.00001 |
ORF3a | 84 | L84V | CtG | GtT | 1 | 53 | All | 0 |
ORF3a | 84 | L84L | ctG | ctT | 51 | 53 | AY.9.1 | 0.00427 |
ORF3a | 84 | L84L | Ctg | Ttg | 2 | 53 | AY.9.1 | 0.000167 |
ORF3a | 84 | L84L | ctG | ctT | 44 | 50 | B.1.36 | 0.00642 |
ORF3a | 84 | L84L | Ctg | Ttg | 5 | 50 | B.1.36 | 0.00073 |
ORF3a | 84 | L84L | ctG | ctC | 1 | 50 | B.1.36 | 0.000146 |
ORF3a | 84 | L84P | cTg | cCg | 46 | 46 | All | 0.000009 |
ORF3a | 84 | L84L | ctG | ctC | 43 | 46 | B.1.575 | 0.013046 |
ORF3a | 84 | L84L | ctG | ctT | 3 | 46 | B.1.575 | 0.00091 |
ORF3a | 84 | L84L | Ctg | Ttg | 17 | 44 | AY.20 | 0.000661 |
ORF3a | 84 | L84L | ctG | ctA | 15 | 44 | AY.20 | 0.000583 |
ORF3a | 84 | L84L | ctG | ctT | 12 | 44 | AY.20 | 0.000466 |
ORF3a | 84 | L84L | ctG | ctT | 37 | 40 | AY.5 | 0.000764 |
ORF3a | 84 | L84L | ctG | ctA | 2 | 40 | AY.5 | 0.000041 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 40 | AY.5 | 0.000021 |
ORF3a | 84 | L84L | ctG | ctT | 35 | 36 | AY.54 | 0.003337 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 36 | AY.54 | 0.000095 |
ORF3a | 84 | L84L | Ctg | Ttg | 34 | 35 | B.1.1.70 | 0.011596 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 35 | B.1.1.70 | 0.000341 |
ORF3a | 84 | L84L | Ctg | Ttg | 30 | 34 | AY.111 | 0.005495 |
ORF3a | 84 | L84L | ctG | ctT | 4 | 34 | AY.111 | 0.000733 |
ORF3a | 84 | L84L | ctG | ctT | 29 | 32 | B.1.609 | 0.013902 |
ORF3a | 84 | L84L | Ctg | Ttg | 3 | 32 | B.1.609 | 0.001438 |
ORF3a | 84 | L84L | Ctg | Ttg | 26 | 32 | P.1.14 | 0.001243 |
ORF3a | 84 | L84L | ctG | ctT | 6 | 32 | P.1.14 | 0.000287 |
ORF3a | 84 | L84L | ctG | ctT | 22 | 31 | AY.45 | 0.002677 |
ORF3a | 84 | L84L | ctG | ctA | 6 | 31 | AY.45 | 0.00073 |
ORF3a | 84 | L84L | Ctg | Ttg | 3 | 31 | AY.45 | 0.000365 |
ORF3a | 84 | L84M | Ctg | Atg | 30 | 30 | B.1.1.7 | 0.000027 |
ORF3a | 84 | L84L | ctG | ctT | 16 | 29 | AY.42 | 0.000644 |
ORF3a | 84 | L84L | Ctg | Ttg | 13 | 29 | AY.42 | 0.000523 |
ORF3a | 84 | L84V | Ctg | Gtg | 29 | 29 | B.1.349 | 0.020729 |
ORF3a | 84 | L84L | ctG | ctT | 29 | 29 | B.1.631 | 0.097643 |
ORF3a | 84 | L84L | ctG | ctT | 16 | 28 | AY.39 | 0.000395 |
ORF3a | 84 | L84L | Ctg | Ttg | 9 | 28 | AY.39 | 0.000222 |
ORF3a | 84 | L84L | ctG | ctA | 3 | 28 | AY.39 | 0.000074 |
ORF3a | 84 | L84L | Ctg | Ttg | 19 | 28 | AY.53 | 0.005463 |
ORF3a | 84 | L84L | ctG | ctT | 9 | 28 | AY.53 | 0.002588 |
ORF3a | 84 | L84L | ctG | ctT | 24 | 27 | AY.121 | 0.003248 |
ORF3a | 84 | L84L | Ctg | Ttg | 3 | 27 | AY.121 | 0.000406 |
ORF3a | 84 | L84L | Ctg | Ttg | 27 | 27 | AY.95 | 0.020548 |
ORF3a | 84 | L84L | ctG | ctT | 20 | 27 | B.1.351 | 0.000595 |
ORF3a | 84 | L84L | Ctg | Ttg | 3 | 27 | B.1.351 | 0.000089 |
ORF3a | 84 | L84L | ctG | ctA | 3 | 27 | B.1.351 | 0.000089 |
ORF3a | 84 | L84L | ctG | ctC | 1 | 27 | B.1.351 | 0.00003 |
ORF3a | 84 | L84F | CtG | TtT | 24 | 24 | All | 0.000005 |
ORF3a | 84 | L84L | ctG | ctT | 24 | 24 | Q.8 | 0.003958 |
ORF3a | 84 | L84L | ctG | ctT | 13 | 23 | AY.29 | 0.000205 |
ORF3a | 84 | L84L | Ctg | Ttg | 9 | 23 | AY.29 | 0.000142 |
ORF3a | 84 | L84L | ctG | ctC | 1 | 23 | AY.29 | 0.000016 |
ORF3a | 84 | L84L | ctG | ctT | 23 | 23 | AY.5.4 | 0.006364 |
ORF3a | 84 | L84L | ctG | ctT | 21 | 23 | B.1.1.222 | 0.004284 |
ORF3a | 84 | L84L | Ctg | Ttg | 2 | 23 | B.1.1.222 | 0.000408 |
ORF3a | 84 | L84F | CtG | TtT | 22 | 22 | AY.103 | 0.000137 |
ORF3a | 84 | L84L | ctG | ctA | 17 | 22 | AY.16 | 0.006454 |
ORF3a | 84 | L84L | Ctg | Ttg | 5 | 22 | AY.16 | 0.001898 |
ORF3a | 84 | L84L | ctG | ctT | 19 | 22 | B.1.1.306 | 0.00833 |
ORF3a | 84 | L84L | Ctg | Ttg | 2 | 22 | B.1.1.306 | 0.000877 |
ORF3a | 84 | L84L | ctG | ctA | 1 | 22 | B.1.1.306 | 0.000438 |
ORF3a | 84 | L84L | Ctg | Ttg | 14 | 21 | B.1.221 | 0.000994 |
ORF3a | 84 | L84L | ctG | ctT | 7 | 21 | B.1.221 | 0.000497 |
ORF3a | 84 | L84L | Ctg | Ttg | 13 | 20 | B.1.1.28 | 0.004046 |
ORF3a | 84 | L84L | ctG | ctT | 4 | 20 | B.1.1.28 | 0.001245 |
ORF3a | 84 | L84L | ctG | ctA | 3 | 20 | B.1.1.28 | 0.000934 |
ORF3a | 84 | L84L | Ctg | Ttg | 11 | 20 | B.1.427 | 0.000555 |
ORF3a | 84 | L84L | ctG | ctT | 8 | 20 | B.1.427 | 0.000404 |
ORF3a | 84 | L84L | ctG | ctA | 1 | 20 | B.1.427 | 0.00005 |
ORF3a | 84 | L84L | ctG | ctT | 14 | 20 | B.1.526 | 0.000329 |
ORF3a | 84 | L84L | ctG | ctA | 4 | 20 | B.1.526 | 0.000094 |
ORF3a | 84 | L84L | Ctg | Ttg | 2 | 20 | B.1.526 | 0.000047 |
ORF3a | 84 | L84L | Ctg | Ttg | 13 | 19 | AY.100 | 0.000598 |
ORF3a | 84 | L84L | ctG | ctT | 5 | 19 | AY.100 | 0.00023 |
ORF3a | 84 | L84L | ctG | ctA | 1 | 19 | AY.100 | 0.000046 |
ORF3a | 84 | L84L | ctG | ctT | 12 | 19 | AY.6 | 0.000494 |
ORF3a | 84 | L84L | Ctg | Ttg | 6 | 19 | AY.6 | 0.000247 |
ORF3a | 84 | L84L | ctG | ctA | 1 | 19 | AY.6 | 0.000041 |
ORF3a | 84 | L84del | CTG | --- | 19 | 19 | B.1.1.7 | 0.000017 |
ORF3a | 84 | L84P | cTg | cCg | 19 | 19 | B.1.1.7 | 0.000017 |
ORF3a | 84 | L84L | ctG | ctT | 13 | 18 | AY.26 | 0.000368 |
ORF3a | 84 | L84L | Ctg | Ttg | 3 | 18 | AY.26 | 0.000085 |
ORF3a | 84 | L84L | ctG | ctA | 2 | 18 | AY.26 | 0.000057 |
ORF3a | 84 | L84L | ctG | ctT | 17 | 17 | AY.87 | 0.014155 |
ORF3a | 84 | L84L | Ctg | Ttg | 12 | 17 | B.1.621 | 0.001062 |
ORF3a | 84 | L84L | ctG | ctT | 4 | 17 | B.1.621 | 0.000354 |
ORF3a | 84 | L84L | ctG | ctA | 1 | 17 | B.1.621 | 0.000089 |
ORF3a | 84 | L84L | Ctg | Ttg | 16 | 16 | AY.107 | 0.007456 |
ORF3a | 84 | L84L | ctG | ctT | 16 | 16 | AY.64 | 0.009524 |
ORF3a | 84 | L84L | ctG | ctC | 11 | 16 | B.1.1.176 | 0.004833 |
ORF3a | 84 | L84L | ctG | ctT | 5 | 16 | B.1.1.176 | 0.002197 |
ORF3a | 84 | L84L | ctG | ctT | 13 | 15 | AY.117 | 0.001099 |
ORF3a | 84 | L84L | ctG | ctA | 1 | 15 | AY.117 | 0.000085 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 15 | AY.117 | 0.000085 |
ORF3a | 84 | L84L | ctG | ctT | 8 | 15 | AY.23 | 0.000558 |
ORF3a | 84 | L84L | Ctg | Ttg | 4 | 15 | AY.23 | 0.000279 |
ORF3a | 84 | L84L | ctG | ctC | 2 | 15 | AY.23 | 0.000139 |
ORF3a | 84 | L84L | ctG | ctA | 1 | 15 | AY.23 | 0.00007 |
ORF3a | 84 | L84L | ctG | ctT | 15 | 15 | B.1.1.386 | 1 |
ORF3a | 84 | L84L | Ctg | Ttg | 15 | 15 | B.1.110.3 | 0.010776 |
ORF3a | 84 | L84L | ctG | ctT | 14 | 15 | B.1.311 | 0.003844 |
ORF3a | 84 | L84L | ctG | ctA | 1 | 15 | B.1.311 | 0.000275 |
ORF3a | 84 | L84L | Ctg | Ttg | 7 | 14 | AY.119 | 0.000247 |
ORF3a | 84 | L84L | ctG | ctT | 7 | 14 | AY.119 | 0.000247 |
ORF3a | 84 | L84L | ctG | ctT | 10 | 14 | AY.99.2 | 0.000922 |
ORF3a | 84 | L84L | ctG | ctA | 2 | 14 | AY.99.2 | 0.000184 |
ORF3a | 84 | L84L | Ctg | Ttg | 2 | 14 | AY.99.2 | 0.000184 |
ORF3a | 84 | L84L | Ctg | Ttg | 12 | 14 | B.1.1.311 | 0.004298 |
ORF3a | 84 | L84L | ctG | ctT | 2 | 14 | B.1.1.311 | 0.000716 |
ORF3a | 84 | L84Q | cTg | cAg | 12 | 13 | All | 0.000002 |
ORF3a | 84 | L84Q | cTG | cAA | 1 | 13 | All | 0 |
ORF3a | 84 | L84L | ctG | ctT | 13 | 13 | B.1.177.21 | 0.000994 |
ORF3a | 84 | L84L | ctG | ctT | 10 | 12 | AY.46.6 | 0.000722 |
ORF3a | 84 | L84L | Ctg | Ttg | 2 | 12 | AY.46.6 | 0.000144 |
ORF3a | 84 | L84L | ctG | ctT | 8 | 12 | B.1.1.33 | 0.003367 |
ORF3a | 84 | L84L | Ctg | Ttg | 4 | 12 | B.1.1.33 | 0.001684 |
ORF3a | 84 | L84L | ctG | ctT | 12 | 12 | B.1.351.2 | 0.003631 |
ORF3a | 84 | L84L | ctG | ctT | 11 | 12 | B.1.617.1 | 0.001419 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 12 | B.1.617.1 | 0.000129 |
ORF3a | 84 | L84del1 | ctG | ct- | 9 | 11 | All | 0.000002 |
ORF3a | 84 | L84del1 | cTg | c-g | 1 | 11 | All | 0 |
ORF3a | 84 | L84del1 | Ctg | -tg | 1 | 11 | All | 0 |
ORF3a | 84 | L84L | ctG | ctA | 6 | 11 | AY.98.1 | 0.000291 |
ORF3a | 84 | L84L | Ctg | Ttg | 3 | 11 | AY.98.1 | 0.000145 |
ORF3a | 84 | L84L | ctG | ctT | 2 | 11 | AY.98.1 | 0.000097 |
ORF3a | 84 | L84L | ctG | ctT | 9 | 10 | AY.61 | 0.000943 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 10 | AY.61 | 0.000105 |
ORF3a | 84 | L84L | ctG | ctT | 10 | 10 | B.1.1.39 | 0.005097 |
ORF3a | 84 | L84V | Ctg | Gtg | 10 | 10 | B.1.1.7 | 0.000009 |
ORF3a | 84 | L84L | ctG | ctT | 7 | 10 | B.1.525 | 0.000792 |
ORF3a | 84 | L84L | Ctg | Ttg | 3 | 10 | B.1.525 | 0.000339 |
ORF3a | 84 | L84L | Ctg | Ttg | 5 | 10 | C.37 | 0.00058 |
ORF3a | 84 | L84L | ctG | ctT | 4 | 10 | C.37 | 0.000464 |
ORF3a | 84 | L84L | ctG | ctA | 1 | 10 | C.37 | 0.000116 |
ORF3a | 84 | L84L | ctG | ctT | 4 | 9 | AY.47 | 0.000124 |
ORF3a | 84 | L84L | ctG | ctA | 4 | 9 | AY.47 | 0.000124 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 9 | AY.47 | 0.000031 |
ORF3a | 84 | L84L | ctG | ctT | 9 | 9 | B.1.523 | 0.022059 |
ORF3a | 84 | L84L | Ctg | Ttg | 5 | 9 | P.2 | 0.000933 |
ORF3a | 84 | L84L | ctG | ctT | 4 | 9 | P.2 | 0.000747 |
ORF3a | 84 | L84del2 | cTG | c-- | 5 | 8 | All | 0.000001 |
ORF3a | 84 | L84del2 | CTG | T-- | 3 | 8 | All | 0.000001 |
ORF3a | 84 | L84L | ctG | ctT | 8 | 8 | AY.27 | 0.000518 |
ORF3a | 84 | L84del | CTG | --- | 8 | 8 | AY.4 | 0.000012 |
ORF3a | 84 | L84L | ctG | ctT | 7 | 8 | B.1.1.214 | 0.000388 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 8 | B.1.1.214 | 0.000055 |
ORF3a | 84 | L84L | ctG | ctT | 8 | 8 | B.1.1.261 | 0.068966 |
ORF3a | 84 | L84L | ctG | ctT | 8 | 8 | B.1.1.37 | 0.001543 |
ORF3a | 84 | L84L | Ctg | Ttg | 8 | 8 | B.1.177.15 | 0.005047 |
ORF3a | 84 | L84L | ctG | ctT | 7 | 8 | B.1.243 | 0.000487 |
ORF3a | 84 | L84L | ctG | ctA | 1 | 8 | B.1.243 | 0.00007 |
ORF3a | 84 | L84L | ctG | ctT | 5 | 8 | B.1.596 | 0.000436 |
ORF3a | 84 | L84L | ctG | ctA | 2 | 8 | B.1.596 | 0.000174 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 8 | B.1.596 | 0.000087 |
ORF3a | 84 | L84L | Ctg | Ttg | 4 | 8 | B.1.637 | 0.000292 |
ORF3a | 84 | L84L | ctG | ctA | 2 | 8 | B.1.637 | 0.000146 |
ORF3a | 84 | L84L | ctG | ctT | 2 | 8 | B.1.637 | 0.000146 |
ORF3a | 84 | L84L | ctG | ctT | 4 | 7 | AY.118 | 0.000251 |
ORF3a | 84 | L84L | Ctg | Ttg | 3 | 7 | AY.118 | 0.000188 |
ORF3a | 84 | L84L | ctG | ctT | 5 | 7 | AY.29.1 | 0.001103 |
ORF3a | 84 | L84L | Ctg | Ttg | 2 | 7 | AY.29.1 | 0.000441 |
ORF3a | 84 | L84L | ctG | ctT | 5 | 7 | AY.39.1 | 0.000198 |
ORF3a | 84 | L84L | Ctg | Ttg | 2 | 7 | AY.39.1 | 0.000079 |
ORF3a | 84 | L84Q | cTg | cAg | 7 | 7 | AY.43 | 0.000031 |
ORF3a | 84 | L84L | ctG | ctT | 5 | 7 | AY.75 | 0.00028 |
ORF3a | 84 | L84L | Ctg | Ttg | 2 | 7 | AY.75 | 0.000112 |
ORF3a | 84 | L84L | ctG | ctT | 4 | 7 | AY.98 | 0.000316 |
ORF3a | 84 | L84L | Ctg | Ttg | 3 | 7 | AY.98 | 0.000237 |
ORF3a | 84 | L84L | Ctg | Ttg | 4 | 7 | B.1.1.318 | 0.001207 |
ORF3a | 84 | L84L | ctG | ctT | 3 | 7 | B.1.1.318 | 0.000905 |
ORF3a | 84 | L84L | ctG | ctT | 5 | 7 | Q.1 | 0.000632 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 7 | Q.1 | 0.000126 |
ORF3a | 84 | L84L | ctG | ctA | 1 | 7 | Q.1 | 0.000126 |
ORF3a | 84 | L84L | ctG | ctT | 6 | 6 | AY.12 | 0.001896 |
ORF3a | 84 | L84L | Ctg | Ttg | 4 | 6 | AY.34 | 0.000388 |
ORF3a | 84 | L84L | ctG | ctA | 1 | 6 | AY.34 | 0.000097 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 6 | AY.34 | 0.000097 |
ORF3a | 84 | L84P | cTg | cCg | 6 | 6 | AY.4 | 0.000009 |
ORF3a | 84 | L84M | Ctg | Atg | 6 | 6 | AY.4 | 0.000009 |
ORF3a | 84 | L84L | ctG | ctT | 6 | 6 | B.1.1.51 | 0.010309 |
ORF3a | 84 | L84del | CTG | --- | 6 | 6 | B.1.177 | 0.000079 |
ORF3a | 84 | L84L | ctG | ctT | 6 | 6 | B.1.396 | 0.004234 |
ORF3a | 84 | L84L | Ctg | Ttg | 6 | 6 | B.1.438.1 | 0.000644 |
ORF3a | 84 | L84del | CTG | --- | 6 | 6 | B.1.617.2 | 0.000023 |
ORF3a | 84 | L84L | Ctg | Ttg | 3 | 5 | 0.166667 | |
ORF3a | 84 | L84L | ctG | ctA | 2 | 5 | 0.111111 | |
ORF3a | 84 | L84L | ctG | ctT | 4 | 5 | A.23.1 | 0.002817 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 5 | A.23.1 | 0.000704 |
ORF3a | 84 | L84M | Ctg | Atg | 5 | 5 | AY.25 | 0.00003 |
ORF3a | 84 | L84L | Ctg | Ttg | 3 | 5 | AY.34.1 | 0.00153 |
ORF3a | 84 | L84L | ctG | ctT | 2 | 5 | AY.34.1 | 0.00102 |
ORF3a | 84 | L84L | ctG | ctT | 5 | 5 | AY.36 | 0.000741 |
ORF3a | 84 | L84M | Ctg | Atg | 5 | 5 | AY.45 | 0.000608 |
ORF3a | 84 | L84L | ctG | ctT | 5 | 5 | B.1.1.25 | 0.002843 |
ORF3a | 84 | L84M | Ctg | Atg | 5 | 5 | B.1.177.45 | 0.001906 |
ORF3a | 84 | L84L | ctG | ctT | 3 | 5 | B.1.210 | 0.006397 |
ORF3a | 84 | L84L | Ctg | Ttg | 2 | 5 | B.1.210 | 0.004264 |
ORF3a | 84 | L84L | ctG | ctT | 4 | 5 | B.1.628 | 0.001409 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 5 | B.1.628 | 0.000352 |
ORF3a | 84 | L84L | ctG | ctA | 5 | 5 | C.16 | 0.005302 |
ORF3a | 84 | L84L | ctG | ctA | 3 | 5 | C.36.3 | 0.001702 |
ORF3a | 84 | L84L | ctG | ctT | 2 | 5 | C.36.3 | 0.001134 |
ORF3a | 84 | L84R | cTg | cGg | 2 | 4 | All | 0 |
ORF3a | 84 | L84R | cTG | cGC | 1 | 4 | All | 0 |
ORF3a | 84 | L84R | CTg | AGg | 1 | 4 | All | 0 |
ORF3a | 84 | L84L | ctG | ctT | 4 | 4 | AY.116 | 0.001147 |
ORF3a | 84 | L84L | ctG | ctT | 3 | 4 | AY.14 | 0.000264 |
ORF3a | 84 | L84L | ctG | ctA | 1 | 4 | AY.14 | 0.000088 |
ORF3a | 84 | L84L | ctG | ctT | 2 | 4 | AY.46 | 0.000208 |
ORF3a | 84 | L84L | Ctg | Ttg | 2 | 4 | AY.46 | 0.000208 |
ORF3a | 84 | L84L | ctG | ctT | 4 | 4 | AY.85 | 0.001709 |
ORF3a | 84 | L84M | Ctg | Atg | 4 | 4 | B.1.1 | 0.000073 |
ORF3a | 84 | L84L | ctG | ctT | 2 | 4 | B.1.1.216 | 0.001781 |
ORF3a | 84 | L84L | Ctg | Ttg | 2 | 4 | B.1.1.216 | 0.001781 |
ORF3a | 84 | L84L | Ctg | Ttg | 2 | 4 | B.1.1.52 | 0.02439 |
ORF3a | 84 | L84L | ctG | ctT | 2 | 4 | B.1.1.52 | 0.02439 |
ORF3a | 84 | L84L | ctG | ctT | 4 | 4 | B.1.1.89 | 0.024242 |
ORF3a | 84 | L84L | ctG | ctT | 4 | 4 | B.1.177.33 | 0.006579 |
ORF3a | 84 | L84L | ctG | ctT | 3 | 4 | B.1.177.54 | 0.001819 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 4 | B.1.177.54 | 0.000606 |
ORF3a | 84 | L84L | Ctg | Ttg | 4 | 4 | B.1.177.78 | 0.038835 |
ORF3a | 84 | L84L | ctG | ctT | 4 | 4 | B.1.234 | 0.000528 |
ORF3a | 84 | L84L | ctG | ctT | 4 | 4 | B.1.236 | 0.008214 |
ORF3a | 84 | L84L | ctG | ctT | 4 | 4 | B.1.258 | 0.000266 |
ORF3a | 84 | L84L | ctG | ctT | 2 | 4 | B.1.258.11 | 0.000793 |
ORF3a | 84 | L84L | ctG | ctC | 2 | 4 | B.1.258.11 | 0.000793 |
ORF3a | 84 | L84M | Ctg | Atg | 4 | 4 | B.1.429 | 0.000094 |
ORF3a | 84 | L84L | ctG | ctA | 2 | 3 | A.2.5 | 0.000998 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 3 | A.2.5 | 0.000499 |
ORF3a | 84 | L84V | Ctg | Gtg | 3 | 3 | AY.103 | 0.000019 |
ORF3a | 84 | L84P | cTg | cCg | 3 | 3 | AY.116 | 0.00086 |
ORF3a | 84 | L84L | ctG | ctT | 3 | 3 | AY.38 | 0.001498 |
ORF3a | 84 | L84L | ctG | ctC | 3 | 3 | AY.4.4 | 0.001227 |
ORF3a | 84 | L84L | ctG | ctA | 2 | 3 | AY.4.5 | 0.000215 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 3 | AY.4.5 | 0.000107 |
ORF3a | 84 | L84L | ctG | ctT | 3 | 3 | AY.46.2 | 0.001906 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 3 | AY.46.4 | 0.000165 |
ORF3a | 84 | L84L | ctG | ctC | 1 | 3 | AY.46.4 | 0.000165 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 3 | AY.46.4 | 0.000165 |
ORF3a | 84 | L84L | ctG | ctT | 3 | 3 | AY.51 | 0.002727 |
ORF3a | 84 | L84L | ctG | ctT | 3 | 3 | AY.74 | 0.000347 |
ORF3a | 84 | L84L | ctG | ctT | 3 | 3 | AY.86 | 0.00249 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 3 | AY.92 | 0.000287 |
ORF3a | 84 | L84L | ctG | ctA | 1 | 3 | AY.92 | 0.000287 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 3 | AY.92 | 0.000287 |
ORF3a | 84 | L84L | Ctg | Ttg | 3 | 3 | AY.93 | 0.000819 |
ORF3a | 84 | L84L | Ctg | Ttg | 3 | 3 | B.1.1.186 | 0.010309 |
ORF3a | 84 | L84L | ctG | ctT | 3 | 3 | B.1.1.284 | 0.000322 |
ORF3a | 84 | L84L | ctG | ctT | 3 | 3 | B.1.1.317 | 0.001235 |
ORF3a | 84 | L84del2 | cTG | c-- | 3 | 3 | B.1.1.7 | 0.000003 |
ORF3a | 84 | L84L | ctG | ctT | 2 | 3 | B.1.111 | 0.00235 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 3 | B.1.111 | 0.001175 |
ORF3a | 84 | L84L | ctG | ctT | 3 | 3 | B.1.177.12 | 0.000455 |
ORF3a | 84 | L84del | CTG | --- | 3 | 3 | B.1.177.9 | 0.003995 |
ORF3a | 84 | L84V | Ctg | Gtg | 3 | 3 | B.1.2 | 0.000026 |
ORF3a | 84 | L84L | Ctg | Ttg | 2 | 3 | B.1.36.10 | 0.009569 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 3 | B.1.36.10 | 0.004785 |
ORF3a | 84 | L84L | ctG | ctT | 3 | 3 | B.1.400 | 0.001287 |
ORF3a | 84 | L84L | ctG | ctT | 3 | 3 | B.1.556 | 0.022556 |
ORF3a | 84 | L84L | ctG | ctA | 3 | 3 | B.1.561 | 0.001191 |
ORF3a | 84 | L84L | ctG | ctT | 3 | 3 | B.1.564 | 0.001278 |
ORF3a | 84 | L84M | Ctg | Atg | 3 | 3 | B.1.617.2 | 0.000011 |
ORF3a | 84 | L84Q | cTg | cAg | 2 | 3 | B.1.617.2 | 0.000008 |
ORF3a | 84 | L84Q | cTG | cAA | 1 | 3 | B.1.617.2 | 0.000004 |
ORF3a | 84 | L84L | ctG | ctA | 2 | 3 | C.36 | 0.001821 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 3 | C.36 | 0.000911 |
ORF3a | 84 | L84L | Ctg | Ttg | 3 | 3 | D.2 | 0.000225 |
ORF3a | 84 | L84L | ctG | ctT | 3 | 3 | N.5 | 0.0053 |
ORF3a | 84 | L84R | cTg | cGg | 1 | 3 | P.1 | 0.000016 |
ORF3a | 84 | L84R | cTG | cGC | 1 | 3 | P.1 | 0.000016 |
ORF3a | 84 | L84R | CTg | AGg | 1 | 3 | P.1 | 0.000016 |
ORF3a | 84 | L84L | Ctg | Ttg | 2 | 3 | P.1.10 | 0.000539 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 3 | P.1.10 | 0.000269 |
ORF3a | 84 | L84del | CTG | --- | 3 | 3 | U.3 | 0.011583 |
ORF3a | 84 | L84V | CtG | GtT | 1 | 2 | A.21 | 0.00277 |
ORF3a | 84 | L84V | Ctg | Gtg | 1 | 2 | A.21 | 0.00277 |
ORF3a | 84 | L84P | cTg | cCg | 2 | 2 | AY.103 | 0.000012 |
ORF3a | 84 | L84L | ctG | ctT | 2 | 2 | AY.116.1 | 0.000623 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 2 | AY.120.1 | 0.000321 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 2 | AY.120.1 | 0.000321 |
ORF3a | 84 | L84del | CTG | --- | 2 | 2 | AY.23 | 0.000139 |
ORF3a | 84 | L84P | cTg | cCg | 2 | 2 | AY.3 | 0.00002 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 2 | AY.4.2.1 | 0.000149 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 2 | AY.4.2.1 | 0.000149 |
ORF3a | 84 | L84del | CTG | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF3a | 84 | L84del | CTG | --- | 2 | 2 | AY.43 | 0.000009 |
ORF3a | 84 | L84P | cTg | cCg | 2 | 2 | AY.44 | 0.000012 |
ORF3a | 84 | L84L | ctG | ctT | 2 | 2 | AY.62 | 0.000871 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 2 | AY.71 | 0.000475 |
ORF3a | 84 | L84L | ctG | ctA | 1 | 2 | AY.71 | 0.000475 |
ORF3a | 84 | L84L | ctG | ctT | 2 | 2 | AY.75.1 | 0.000361 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 2 | AY.84 | 0.000437 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 2 | AY.84 | 0.000437 |
ORF3a | 84 | L84L | ctG | ctT | 2 | 2 | AY.88 | 0.001768 |
ORF3a | 84 | L84P | cTg | cCg | 2 | 2 | AY.9.2 | 0.000073 |
ORF3a | 84 | L84L | Ctg | Ttg | 2 | 2 | AY.91 | 0.001461 |
ORF3a | 84 | L84del2 | CTG | T-- | 2 | 2 | B.1 | 0.000018 |
ORF3a | 84 | L84Q | cTg | cAg | 2 | 2 | B.1 | 0.000018 |
ORF3a | 84 | L84M | Ctg | Atg | 2 | 2 | B.1 | 0.000018 |
ORF3a | 84 | L84del | CTG | --- | 2 | 2 | B.1 | 0.000018 |
ORF3a | 84 | L84del1 | ctG | ct- | 2 | 2 | B.1 | 0.000018 |
ORF3a | 84 | L84L | Ctg | Ttg | 2 | 2 | B.1.1.1 | 0.000653 |
ORF3a | 84 | L84L | ctG | ctT | 2 | 2 | B.1.1.101 | 0.02 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 2 | B.1.1.153 | 0.001095 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 2 | B.1.1.153 | 0.001095 |
ORF3a | 84 | L84L | ctG | ctT | 2 | 2 | B.1.1.171 | 0.007353 |
ORF3a | 84 | L84L | Ctg | Ttg | 2 | 2 | B.1.1.220 | 0.003717 |
ORF3a | 84 | L84L | ctG | ctT | 2 | 2 | B.1.1.226 | 0.011628 |
ORF3a | 84 | L84V | Ctg | Gtg | 2 | 2 | B.1.1.311 | 0.000716 |
ORF3a | 84 | L84L | Ctg | Ttg | 2 | 2 | B.1.1.370 | 0.025316 |
ORF3a | 84 | L84L | ctG | ctT | 2 | 2 | B.1.1.397 | 0.004505 |
ORF3a | 84 | L84L | ctG | ctT | 2 | 2 | B.1.1.398 | 0.006452 |
ORF3a | 84 | L84L | ctG | ctT | 2 | 2 | B.1.1.430 | 0.083333 |
ORF3a | 84 | L84L | ctG | ctT | 2 | 2 | B.1.1.462 | 0.017241 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 2 | B.1.1.63 | 0.000386 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 2 | B.1.1.63 | 0.000386 |
ORF3a | 84 | L84L | Ctg | Ttg | 2 | 2 | B.1.177.44 | 0.001038 |
ORF3a | 84 | L84L | Ctg | Ttg | 2 | 2 | B.1.177.58 | 0.002663 |
ORF3a | 84 | L84L | Ctg | Ttg | 2 | 2 | B.1.177.69 | 0.002967 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 2 | B.1.177.7 | 0.000165 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 2 | B.1.177.7 | 0.000165 |
ORF3a | 84 | L84del1 | ctG | ct- | 2 | 2 | B.1.2 | 0.000018 |
ORF3a | 84 | L84L | Ctg | Ttg | 2 | 2 | B.1.208 | 0.08 |
ORF3a | 84 | L84L | Ctg | Ttg | 2 | 2 | B.1.221.3 | 0.001667 |
ORF3a | 84 | L84L | ctG | ctT | 2 | 2 | B.1.222 | 0.003384 |
ORF3a | 84 | L84L | ctG | ctT | 2 | 2 | B.1.240 | 0.000431 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 2 | B.1.258.17 | 0.000104 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 2 | B.1.258.17 | 0.000104 |
ORF3a | 84 | L84L | ctG | ctT | 2 | 2 | B.1.346 | 0.002621 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 2 | B.1.36.29 | 0.000517 |
ORF3a | 84 | L84L | ctG | ctA | 1 | 2 | B.1.36.29 | 0.000517 |
ORF3a | 84 | L84L | ctG | ctT | 2 | 2 | B.1.36.8 | 0.002 |
ORF3a | 84 | L84L | ctG | ctT | 2 | 2 | B.1.404 | 0.002604 |
ORF3a | 84 | L84L | ctG | ctA | 2 | 2 | B.1.509 | 0.001732 |
ORF3a | 84 | L84L | ctG | ctT | 2 | 2 | B.1.549 | 0.014388 |
ORF3a | 84 | L84L | Ctg | Ttg | 2 | 2 | B.1.595 | 0.000522 |
ORF3a | 84 | L84P | cTg | cCg | 2 | 2 | B.1.617.2 | 0.000008 |
ORF3a | 84 | L84L | ctG | ctT | 2 | 2 | B.1.617.3 | 0.00597 |
ORF3a | 84 | L84L | ctG | ctT | 2 | 2 | B.1.623 | 0.001073 |
ORF3a | 84 | L84L | ctG | ctA | 2 | 2 | B.1.8 | 0.003945 |
ORF3a | 84 | L84L | Ctg | Ttg | 2 | 2 | B.40 | 0.000729 |
ORF3a | 84 | L84L | ctG | ctT | 2 | 2 | B.6.6 | 0.001778 |
ORF3a | 84 | L84L | Ctg | Ttg | 2 | 2 | N.4 | 0.008511 |
ORF3a | 84 | L84M | Ctg | Atg | 2 | 2 | P.1 | 0.000032 |
ORF3a | 84 | L84del | CTG | --- | 2 | 2 | P.1.15 | 0.000465 |
ORF3a | 84 | L84L | ctG | ctT | 2 | 2 | P.1.16 | 0.000748 |
ORF3a | 84 | L84L | ctG | ctT | 2 | 2 | P.7 | 0.008734 |
ORF3a | 84 | L84L | ctG | ctT | 2 | 2 | R.1 | 0.00018 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | A | 0.000387 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | A.21 | 0.00277 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 1 | A.25 | 0.018182 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 1 | A.27 | 0.001656 |
ORF3a | 84 | L84del | CTG | --- | 1 | 1 | AH.3 | 0.003802 |
ORF3a | 84 | L84S | CTG | AGC | 1 | 1 | All | 0 |
ORF3a | 84 | L84I | CtG | AtC | 1 | 1 | All | 0 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | AY.1 | 0.000396 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | AY.10 | 0.00053 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | AY.101 | 0.00049 |
ORF3a | 84 | L84del | CTG | --- | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 84 | L84del1 | ctG | ct- | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 84 | L84del1 | ctG | ct- | 1 | 1 | AY.103 | 0.000006 |
ORF3a | 84 | L84L | ctG | ctA | 1 | 1 | AY.106 | 0.000335 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | AY.108 | 0.001103 |
ORF3a | 84 | L84V | Ctg | Gtg | 1 | 1 | AY.109 | 0.00074 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 1 | AY.110 | 0.000113 |
ORF3a | 84 | L84del | CTG | --- | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 84 | L84P | cTg | cCg | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 84 | L84del | CTG | --- | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 84 | L84P | cTg | cCg | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 84 | L84M | Ctg | Atg | 1 | 1 | AY.13 | 0.000161 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 1 | AY.13 | 0.000161 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | AY.16.1 | 0.00047 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | AY.17 | 0.008197 |
ORF3a | 84 | L84del1 | ctG | ct- | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 84 | L84del | CTG | --- | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 84 | L84P | cTg | cCg | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 84 | L84del | CTG | --- | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 84 | L84del | CTG | --- | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 84 | L84V | Ctg | Gtg | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | AY.3.1 | 0.000085 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 1 | AY.32 | 0.000532 |
ORF3a | 84 | L84del | CTG | --- | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | AY.37 | 0.000316 |
ORF3a | 84 | L84del | CTG | --- | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 84 | L84M | Ctg | Atg | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 84 | L84del1 | Ctg | -tg | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 84 | L84F | CtG | TtT | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 84 | L84del | CTG | --- | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 84 | L84V | Ctg | Gtg | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 84 | L84P | cTg | cCg | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 84 | L84del1 | ctG | ct- | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | AY.46.1 | 0.001027 |
ORF3a | 84 | L84M | Ctg | Atg | 1 | 1 | AY.46.6 | 0.000072 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | AY.48 | 0.000465 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | AY.49 | 0.003195 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | AY.5.3 | 0.000337 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | AY.55 | 0.000917 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | AY.58 | 0.000907 |
ORF3a | 84 | L84del | CTG | --- | 1 | 1 | AY.62 | 0.000436 |
ORF3a | 84 | L84L | ctG | ctA | 1 | 1 | AY.65 | 0.000533 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 84 | L84L | ctG | ctA | 1 | 1 | AY.72 | 0.001361 |
ORF3a | 84 | L84del1 | ctG | ct- | 1 | 1 | AY.75 | 0.000056 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | AY.9.2.1 | 0.001976 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | AY.99 | 0.001049 |
ORF3a | 84 | L84P | cTg | cCg | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 84 | L84del | CTG | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 84 | L84Q | cTg | cAg | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 84 | L84del2 | CTG | T-- | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 1 | B.1.1.10 | 0.001115 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 1 | B.1.1.135 | 0.004695 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 1 | B.1.1.157 | 0.000913 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | B.1.1.163 | 0.007634 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | B.1.1.232 | 0.001815 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | B.1.1.377 | 0.001381 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | B.1.1.391 | 0.008547 |
ORF3a | 84 | L84del | CTG | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | B.1.1.416 | 0.000905 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 1 | B.1.1.419 | 0.007407 |
ORF3a | 84 | L84del | CTG | --- | 1 | 1 | B.1.1.420 | 0.001006 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 1 | B.1.1.434 | 0.000349 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 1 | B.1.1.448 | 0.002033 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 1 | B.1.1.486 | 0.001577 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | B.1.1.516 | 0.066667 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | B.1.1.525 | 0.005464 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 1 | B.1.1.526 | 0.003546 |
ORF3a | 84 | L84F | CtG | TtT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 84 | L84del1 | cTg | c-g | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | B.1.112 | 0.005181 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | B.1.147 | 0.000756 |
ORF3a | 84 | L84P | cTg | cCg | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 1 | B.1.177.16 | 0.000664 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | B.1.177.3 | 0.007634 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | B.1.177.53 | 0.002392 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF3a | 84 | L84del2 | cTG | c-- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF3a | 84 | L84P | cTg | cCg | 1 | 1 | B.1.177.7 | 0.000165 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF3a | 84 | L84L | ctG | ctC | 1 | 1 | B.1.177.75 | 0.001041 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | B.1.177.80 | 0.001912 |
ORF3a | 84 | L84R | cTg | cGg | 1 | 1 | B.1.177.86 | 0.000183 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | B.1.189 | 0.004292 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 1 | B.1.201 | 0.005682 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | B.1.252 | 0.006623 |
ORF3a | 84 | L84M | Ctg | Atg | 1 | 1 | B.1.332 | 0.003497 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | B.1.35 | 0.008475 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 1 | B.1.351.3 | 0.000876 |
ORF3a | 84 | L84M | Ctg | Atg | 1 | 1 | B.1.351.3 | 0.000876 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | B.1.36.24 | 0.006173 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 1 | B.1.36.31 | 0.001751 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | B.1.36.36 | 0.000602 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 1 | B.1.36.39 | 0.002217 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | B.1.367 | 0.000792 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | B.1.369 | 0.000285 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 1 | B.1.375 | 0.00082 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 1 | B.1.389 | 0.001002 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 1 | B.1.399 | 0.001934 |
ORF3a | 84 | L84del2 | cTG | c-- | 1 | 1 | B.1.399 | 0.001934 |
ORF3a | 84 | L84L | ctG | ctA | 1 | 1 | B.1.408 | 0.00369 |
ORF3a | 84 | L84del | CTG | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 1 | B.1.448 | 0.002625 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | B.1.459 | 0.004082 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | B.1.462 | 0.007246 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 1 | B.1.468 | 0.005714 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | B.1.480 | 0.002488 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | B.1.503 | 0.002488 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | B.1.517 | 0.000427 |
ORF3a | 84 | L84del | CTG | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 1 | B.1.564.1 | 0.001577 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | B.1.576 | 0.000907 |
ORF3a | 84 | L84L | ctG | ctC | 1 | 1 | B.1.580 | 0.004065 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | B.1.582 | 0.000491 |
ORF3a | 84 | L84V | Ctg | Gtg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 84 | L84del | CTG | --- | 1 | 1 | B.1.627 | 0.00202 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 1 | B.1.630 | 0.005236 |
ORF3a | 84 | L84del | CTG | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 1 | B.1.78 | 0.008547 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | B.1.81 | 0.021277 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 1 | B.57 | 0.015152 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | C.23 | 0.005814 |
ORF3a | 84 | L84M | Ctg | Atg | 1 | 1 | C.30.1 | 0.006711 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | C.35 | 0.000774 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | C.37.1 | 0.002618 |
ORF3a | 84 | L84del | CTG | --- | 1 | 1 | D.2 | 0.000075 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | K.2 | 0.04 |
ORF3a | 84 | L84P | cTg | cCg | 1 | 1 | P.1 | 0.000016 |
ORF3a | 84 | L84S | CTG | AGC | 1 | 1 | P.1 | 0.000016 |
ORF3a | 84 | L84I | CtG | AtC | 1 | 1 | P.1 | 0.000016 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | P.1.17 | 0.000162 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | P.1.7 | 0.000319 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | P.1.8 | 0.004785 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | Q.3 | 0.000145 |
ORF3a | 84 | L84del | CTG | --- | 1 | 1 | Q.8 | 0.000165 |
ORF3a | 84 | L84L | Ctg | Ttg | 1 | 1 | S.1 | 0.00495 |
ORF3a | 84 | L84L | ctG | ctT | 1 | 1 | U.2 | 0.008772 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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