CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 78

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a78H78YnonsynCacTac15416153820.99779525624-25626
ORF3a78H78YnonsynCaCTaT15416340.002205525624-25626
ORF3a78H78HsyncaCcaT1482614826125624-25626
ORF3a78H78QnonsyncaCcaA2752480.90181825624-25626
ORF3a78H78QnonsyncaCcaG275270.098181825624-25626
ORF3a78H78RnonsyncAccGc163163125624-25626
ORF3a78H78DnonsynCacGac93920.98924725624-25626
ORF3a78H78DnonsynCaCGaT9310.010752725624-25626
ORF3a78H78LnonsyncAccTc50490.9825624-25626
ORF3a78H78LnonsyncACcTT5010.0225624-25626
ORF3a78H78deldelCAC---4747125624-25626
ORF3a78H78NnonsynCacAac1919125624-25626
ORF3a78H78PnonsyncAccCc740.57142925624-25626
ORF3a78H78PnonsyncACcCT730.42857125624-25626
ORF3a78H78del1delcaCca-420.525624-25626
ORF3a78H78del1delCac-ac420.525624-25626
ORF3a78H78del2delcACc--320.66666725624-25626
ORF3a78H78del2delCAc--c310.33333325624-25626
ORF3a78H78SnonsynCAcTCc22125624-25626

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a78H78YCacTac1538215416All0.002942
ORF3a78H78YCaCTaT3415416All0.000007
ORF3a78H78HcaCcaT1482614826All0.002836
ORF3a78H78HcaCcaT51915191B.1.1.70.004647
ORF3a78H78YCacTac33273340B.1.1.70.002978
ORF3a78H78YCaCTaT133340B.1.1.70.000012
ORF3a78H78YCacTac17841784AY.430.007904
ORF3a78H78HcaCcaT16281628Q.20.998773
ORF3a78H78YCacTac12171217AY.40.001894
ORF3a78H78HcaCcaT10821082AY.750.060616
ORF3a78H78YCacTac798798B.1.2580.053104
ORF3a78H78HcaCcaT676676AY.470.021027
ORF3a78H78HcaCcaT636636Q.10.080344
ORF3a78H78YCacTac614615B.1.1.4860.968454
ORF3a78H78YCaCTaT1615B.1.1.4860.001577
ORF3a78H78HcaCcaT611611AY.430.002707
ORF3a78H78YCacTac550550AY.1030.003415
ORF3a78H78HcaCcaT518518B.1.1.2880.992337
ORF3a78H78HcaCcaT433433B.1.20.003813
ORF3a78H78HcaCcaT422422AY.440.002569
ORF3a78H78YCacTac404404B.1.617.20.001521
ORF3a78H78HcaCcaT389389AY.40.000605
ORF3a78H78YCacTac388388B.1.1770.005109
ORF3a78H78HcaCcaT339339B.1.617.20.001276
ORF3a78H78YCacTac323331B.1.20.002844
ORF3a78H78YCaCTaT8331B.1.20.00007
ORF3a78H78YCacTac303303AY.560.486356
ORF3a78H78YCacTac277277B.1.2210.019676
ORF3a78H78QcaCcaA248275All0.000047
ORF3a78H78QcaCcaG27275All0.000005
ORF3a78H78YCacTac273273AY.950.207763
ORF3a78H78YCacTac234234AY.1200.0087
ORF3a78H78YCacTac207213B.10.001896
ORF3a78H78YCaCTaT6213B.10.000055
ORF3a78H78HcaCcaT210210B.1.1.2940.265823
ORF3a78H78YCacTac206206B.1.2430.014334
ORF3a78H78HcaCcaT197197B.1.4290.004635
ORF3a78H78HcaCcaT181181P.10.002851
ORF3a78H78YCacTac176176AY.30.001751
ORF3a78H78RcAccGc163163All0.000031
ORF3a78H78YCacTac156156AY.440.00095
ORF3a78H78HcaCcaT152152AY.1030.000944
ORF3a78H78YCacTac151151AY.260.004275
ORF3a78H78YCacTac150150C.2.11
ORF3a78H78YCacTac146146P.10.0023
ORF3a78H78HcaCcaT145145P.20.027062
ORF3a78H78HcaCcaT142142B.10.001301
ORF3a78H78YCacTac138138AY.250.00083
ORF3a78H78YCacTac133133AY.1160.038142
ORF3a78H78YCacTac118118B.1.1.280.036726
ORF3a78H78YCacTac109109B.1.10.001977
ORF3a78H78HcaCcaT108108B.1.10.001959
ORF3a78H78YCacTac106106AY.1020.00281
ORF3a78H78YCacTac103103B.1.3510.003062
ORF3a78H78HcaCcaT101101B.1.1770.00133
ORF3a78H78YCacTac97100AY.470.003017
ORF3a78H78YCaCTaT3100AY.470.000093
ORF3a78H78YCacTac9595B.1.4290.002235
ORF3a78H78DCacGac9293All0.000018
ORF3a78H78DCaCGaT193All0
ORF3a78H78HcaCcaT9393B.1.6030.989362
ORF3a78H78YCacTac8888AY.140.007745
ORF3a78H78HcaCcaT8888AY.30.000875
ORF3a78H78HcaCcaT8787B.1.177.600.019004
ORF3a78H78HcaCcaT8585AY.1020.002254
ORF3a78H78HcaCcaT8484AY.250.000505
ORF3a78H78YCacTac8181AY.4.20.001757
ORF3a78H78QcaCcaA7979AY.1190.002789
ORF3a78H78HcaCcaT6666AY.46.10.067762
ORF3a78H78YCacTac6565AY.290.001025
ORF3a78H78HcaCcaT6262AY.4.20.001345
ORF3a78H78YCacTac6060B.1.258.140.058824
ORF3a78H78YCacTac6060P.1.130.053908
ORF3a78H78YCacTac5757AY.1210.007713
ORF3a78H78YCacTac5757B.1.438.10.006114
ORF3a78H78YCacTac5555AY.360.008152
ORF3a78H78YCacTac5555AY.9.20.00202
ORF3a78H78YCacTac5353AY.980.004187
ORF3a78H78YCacTac5252AY.98.10.002518
ORF3a78H78YCacTac5151Q.30.007397
ORF3a78H78LcAccTc4950All0.000009
ORF3a78H78LcACcTT150All0
ORF3a78H78DCacGac4950B.1.1.70.000044
ORF3a78H78DCaCGaT150B.1.1.70.000001
ORF3a78H78QcaCcaA4849AY.440.000292
ORF3a78H78QcaCcaG149AY.440.000006
ORF3a78H78YCacTac4848AY.50.000991
ORF3a78H78YCacTac4848B.1.5250.005432
ORF3a78H78YCacTac4747A.23.10.033099
ORF3a78H78delCAC---4747All0.000009
ORF3a78H78HcaCcaT4747B.1.36.170.023221
ORF3a78H78YCacTac4747C.370.005455
ORF3a78H78YCacTac4545B.1.1.2220.00918
ORF3a78H78YCacTac4545B.1.4270.002272
ORF3a78H78RcAccGc4545B.1.617.20.000169
ORF3a78H78HcaCcaT4444AY.260.001246
ORF3a78H78QcaCcaA3044B.1.1.70.000027
ORF3a78H78QcaCcaG1444B.1.1.70.000013
ORF3a78H78YCacTac4343AY.390.001063
ORF3a78H78YCacTac4343B.1.1.3680.132716
ORF3a78H78YCacTac4343Q.40.019554
ORF3a78H78YCacTac3838B.1.177.170.031199
ORF3a78H78HcaCcaT3838B.1.6370.002777
ORF3a78H78HcaCcaT3737AY.330.002471
ORF3a78H78YCacTac3636B.1.1.10.011761
ORF3a78H78HcaCcaT3636B.1.1600.001123
ORF3a78H78YCacTac3636C.20.580645
ORF3a78H78YCacTac3535AY.200.00136
ORF3a78H78YCacTac3131AY.130.00499
ORF3a78H78YCacTac3131B.1.1.3110.011103
ORF3a78H78LcAccTc3030AY.1200.001115
ORF3a78H78HcaCcaT3030B.1.466.20.011737
ORF3a78H78HcaCcaT2929AY.50.000599
ORF3a78H78HcaCcaT2929B.1.1.5190.001152
ORF3a78H78QcaCcaA2829B.1.617.20.000105
ORF3a78H78QcaCcaG129B.1.617.20.000004
ORF3a78H78YCacTac2828AY.700.005838
ORF3a78H78YCacTac2727AK.10.341772
ORF3a78H78YCacTac2727AY.1180.001692
ORF3a78H78YCacTac2727B.1.1.5190.001072
ORF3a78H78HcaCcaT2626B.1.3510.000773
ORF3a78H78YCacTac2626C.360.023679
ORF3a78H78YCacTac2424AY.230.001674
ORF3a78H78YCacTac2424B.1.220.031621
ORF3a78H78HcaCcaT2424B.1.6210.002124
ORF3a78H78YCacTac2424R.10.00216
ORF3a78H78HcaCcaT2323AY.390.000568
ORF3a78H78YCacTac2323B.1.1.3451
ORF3a78H78YCacTac2222AY.4.30.018519
ORF3a78H78YCacTac2222C.80.098214
ORF3a78H78RcAccGc2121AY.420.000845
ORF3a78H78YCacTac2121AY.540.002002
ORF3a78H78YCacTac2121AY.840.009186
ORF3a78H78YCacTac2121B.1.6210.001859
ORF3a78H78YCacTac2020AY.460.002082
ORF3a78H78YCacTac2020B.1.1.1070.645161
ORF3a78H78YCacTac2020B.1.1.3150.169492
ORF3a78H78YCacTac2020B.1.1600.000624
ORF3a78H78HcaCcaT2020P.40.076046
ORF3a78H78NCacAac1919All0.000004
ORF3a78H78HcaCcaT1919B.1.36.290.009829
ORF3a78H78HcaCcaT1919B.1.4270.000959
ORF3a78H78YCacTac1919Q.10.0024
ORF3a78H78HcaCcaT1818AY.420.000724
ORF3a78H78YCacTac1818AY.960.037344
ORF3a78H78YCacTac1717AY.1190.0006
ORF3a78H78HcaCcaT1717AY.230.001186
ORF3a78H78YCacTac1717AY.300.006727
ORF3a78H78QcaCcaA1517AY.40.000023
ORF3a78H78QcaCcaG217AY.40.000003
ORF3a78H78YCacTac1717AY.610.001781
ORF3a78H78YCacTac1717B.1.617.10.002192
ORF3a78H78YCacTac1616AY.920.004596
ORF3a78H78YCacTac1616B.1.258.170.001664
ORF3a78H78YCacTac1616D.20.001201
ORF3a78H78YCacTac1616P.1.140.000765
ORF3a78H78HcaCcaT1515AY.200.000583
ORF3a78H78YCacTac1515AY.70.00294
ORF3a78H78YCacTac1515B.1.1.2070.01773
ORF3a78H78YCacTac1515B.1.6230.008047
ORF3a78H78HcaCcaT1414AY.360.002075
ORF3a78H78delCAC---1414B.1.1.70.000013
ORF3a78H78YCacTac1313AY.1100.001465
ORF3a78H78YCacTac1313AY.330.000868
ORF3a78H78HcaCcaT1313P.1.140.000621
ORF3a78H78YCacTac1212AY.1000.000552
ORF3a78H78HcaCcaT1212AY.1170.001014
ORF3a78H78YCacTac1212AY.750.000672
ORF3a78H78YCacTac1212B.1.1.150.162162
ORF3a78H78YCacTac1212B.1.1.2840.001289
ORF3a78H78YCacTac1212B.1.1.500.008147
ORF3a78H78YCacTac1212B.1.177.210.000918
ORF3a78H78YCacTac1212B.1.177.600.002621
ORF3a78H78YCacTac1212B.1.2060.009788
ORF3a78H78YCacTac1212B.1.5750.003641
ORF3a78H78YCacTac1111AY.120.10.003531
ORF3a78H78YCacTac1111AY.4.10.008112
ORF3a78H78RcAccGc1111AY.940.004869
ORF3a78H78HcaCcaT1111AY.99.20.001014
ORF3a78H78YCacTac1111B.1.1.2040.033435
ORF3a78H78HcaCcaT1111B.1.2580.000732
ORF3a78H78HcaCcaT1111B.1.5600.050926
ORF3a78H78HcaCcaT1111B.1.5960.000959
ORF3a78H78YCacTac1111P.1.150.002556
ORF3a78H78RcAccGc1010AY.1000.00046
ORF3a78H78YCacTac1010AY.46.60.000722
ORF3a78H78YCacTac1010AY.90.000676
ORF3a78H78HcaCcaT1010AY.9.20.000367
ORF3a78H78YCacTac1010B.1.1.1390.227273
ORF3a78H78YCacTac1010B.1.1.2160.008905
ORF3a78H78HcaCcaT1010B.1.1.4340.003486
ORF3a78H78HcaCcaT1010B.1.258.170.00104
ORF3a78H78YCacTac1010B.1.3110.002746
ORF3a78H78YCacTac1010B.1.360.001459
ORF3a78H78HcaCcaT1010D.20.00075
ORF3a78H78YCacTac1010Q.80.001649
ORF3a78H78YCacTac99AY.790.010896
ORF3a78H78HcaCcaT99B.1.1.2800.027778
ORF3a78H78YCacTac99B.1.2220.015228
ORF3a78H78YCacTac99B.1.5910.095745
ORF3a78H78LcAccTc99B.1.617.20.000034
ORF3a78H78HcaCcaT99P.1.150.002091
ORF3a78H78HcaCcaT88AY.98.10.000387
ORF3a78H78RcAccGc88B.1.10.000145
ORF3a78H78HcaCcaT88B.1.1.3170.003294
ORF3a78H78YCacTac88B.1.1.630.003086
ORF3a78H78YCacTac88B.1.2340.001056
ORF3a78H78YCacTac88B.1.36.290.004139
ORF3a78H78HcaCcaT88B.1.3690.002282
ORF3a78H78HcaCcaT88B.1.5240.011252
ORF3a78H78YCacTac88P.20.001493
ORF3a78H78RcAccGc77AH.30.026616
ORF3a78H78PcAccCc47All0.000001
ORF3a78H78PcACcCT37All0.000001
ORF3a78H78HcaCcaT77AY.1160.002007
ORF3a78H78HcaCcaT77AY.1190.000247
ORF3a78H78YCacTac77AY.120.002212
ORF3a78H78HcaCcaT77AY.290.00011
ORF3a78H78YCacTac77AY.39.10.000277
ORF3a78H78DCacGac77AY.430.000031
ORF3a78H78HcaCcaT77AY.46.60.000505
ORF3a78H78YCacTac77AY.60.000288
ORF3a78H78HcaCcaT77AY.90.000473
ORF3a78H78HcaCcaT77AY.920.002011
ORF3a78H78YCacTac77B.1.1.3030.019337
ORF3a78H78HcaCcaT77B.1.2210.000497
ORF3a78H78HcaCcaT77B.1.360.001021
ORF3a78H78RcAccGc77B.1.4290.000165
ORF3a78H78YCacTac77B.1.5950.001827
ORF3a78H78YCacTac77B.1.5960.00061
ORF3a78H78YCacTac66AY.1170.000507
ORF3a78H78HcaCcaT66AY.1180.000376
ORF3a78H78HcaCcaT66AY.3.10.000512
ORF3a78H78YCacTac66AY.420.000241
ORF3a78H78YCacTac66AY.450.00073
ORF3a78H78HcaCcaT66AY.460.000624
ORF3a78H78HcaCcaT66AY.60.000247
ORF3a78H78YCacTac66AY.9.10.000502
ORF3a78H78YCacTac66AY.970.010204
ORF3a78H78HcaCcaT66B.1.1.2970.013423
ORF3a78H78HcaCcaT66B.1.1.370.001157
ORF3a78H78HcaCcaT66B.1.177.210.000459
ORF3a78H78QcaCcaA66B.1.428.20.2
ORF3a78H78HcaCcaT66L.40.3
ORF3a78H78HcaCcaT66P.1.70.001916
ORF3a78H78YCacTac55AY.1090.003698
ORF3a78H78HcaCcaT55AY.1210.000677
ORF3a78H78YCacTac55AY.340.000485
ORF3a78H78YCacTac55AY.380.002496
ORF3a78H78HcaCcaT55AY.450.000608
ORF3a78H78YCacTac55AY.46.10.005133
ORF3a78H78YCacTac55AY.46.40.000823
ORF3a78H78YCacTac55AY.590.002648
ORF3a78H78DCacGac55AY.700.001043
ORF3a78H78HcaCcaT55AY.75.10.000902
ORF3a78H78HcaCcaT55AY.860.004149
ORF3a78H78YCacTac55B0.000639
ORF3a78H78RcAccGc55B.10.000046
ORF3a78H78YCacTac55B.1.1.1920.011547
ORF3a78H78HcaCcaT55B.1.1.2140.000277
ORF3a78H78YCacTac55B.1.1.3180.001509
ORF3a78H78YCacTac55B.1.1.4320.006329
ORF3a78H78YCacTac55B.1.160.130.138889
ORF3a78H78delCAC---55B.1.1770.000066
ORF3a78H78HcaCcaT55B.1.177.100.00439
ORF3a78H78YCacTac55B.1.177.550.011655
ORF3a78H78DCacGac55B.1.177.70.000824
ORF3a78H78HcaCcaT55B.1.2430.000348
ORF3a78H78YCacTac55B.1.3960.003529
ORF3a78H78YCacTac55B.1.466.20.001956
ORF3a78H78HcaCcaT55B.1.4700.007022
ORF3a78H78HcaCcaT55B.1.5260.000118
ORF3a78H78QcaCcaA55B.1.5770.003436
ORF3a78H78YCacTac55B.1.6280.001762
ORF3a78H78YCacTac55B.1.6370.000365
ORF3a78H78YCacTac55B.1.840.104167
ORF3a78H78PcACcCT240.111111
ORF3a78H78PcAccCc240.111111
ORF3a78H78YCacTac44A.2.50.001996
ORF3a78H78del1caCca-24All0
ORF3a78H78del1Cac-ac24All0
ORF3a78H78RcAccGc44AY.1020.000106
ORF3a78H78YCacTac44AY.16.10.00188
ORF3a78H78RcAccGc44AY.230.000279
ORF3a78H78QcaCcaA34AY.340.000291
ORF3a78H78QcaCcaG14AY.340.000097
ORF3a78H78YCacTac44AY.350.000932
ORF3a78H78HcaCcaT44AY.4.50.00043
ORF3a78H78QcaCcaA44AY.460.000416
ORF3a78H78YCacTac44AY.46.30.003735
ORF3a78H78HcaCcaT44AY.46.50.000794
ORF3a78H78HcaCcaT44AY.5.40.001107
ORF3a78H78YCacTac44AY.75.10.000721
ORF3a78H78HcaCcaT44AY.9.10.000335
ORF3a78H78YCacTac44AY.930.001092
ORF3a78H78YCacTac44AZ.20.003284
ORF3a78H78HcaCcaT44B.1.1.1920.009238
ORF3a78H78YCacTac44B.1.1.2140.000222
ORF3a78H78HcaCcaT44B.1.1.2220.000816
ORF3a78H78YCacTac44B.1.1.250.002274
ORF3a78H78YCacTac44B.1.1.3060.001754
ORF3a78H78HcaCcaT44B.1.1.3960.181818
ORF3a78H78RcAccGc44B.1.1.70.000004
ORF3a78H78RcAccGc44B.1.1600.000125
ORF3a78H78YCacTac44B.1.177.70.000659
ORF3a78H78RcAccGc44B.1.177.770.002905
ORF3a78H78NCacAac44B.1.20.000035
ORF3a78H78QcaCcaA44B.1.20.000035
ORF3a78H78HcaCcaT44B.1.2340.000528
ORF3a78H78HcaCcaT44B.1.3910.00451
ORF3a78H78DCacGac44B.1.4290.000094
ORF3a78H78YCacTac44C.330.235294
ORF3a78H78HcaCcaT44P.1.170.000647
ORF3a78H78YCacTac33AE.80.001467
ORF3a78H78del2cACc--23All0
ORF3a78H78del2CAc--c13All0
ORF3a78H78QcaCcaA33AY.1030.000019
ORF3a78H78YCacTac33AY.1060.001005
ORF3a78H78YCacTac33AY.1110.000549
ORF3a78H78HcaCcaT33AY.1110.000549
ORF3a78H78YCacTac33AY.1130.000427
ORF3a78H78HcaCcaT33AY.1200.000112
ORF3a78H78QcaCcaA33AY.200.000117
ORF3a78H78YCacTac33AY.210.005693
ORF3a78H78RcAccGc33AY.250.000018
ORF3a78H78HcaCcaT33AY.270.000194
ORF3a78H78HcaCcaT33AY.300.001187
ORF3a78H78YCacTac33AY.320.001597
ORF3a78H78HcaCcaT33AY.380.001498
ORF3a78H78HcaCcaT33AY.39.10.000119
ORF3a78H78RcAccGc33AY.40.000005
ORF3a78H78YCacTac33AY.4.2.10.000447
ORF3a78H78HcaCcaT33AY.4.40.001227
ORF3a78H78RcAccGc33AY.430.000013
ORF3a78H78HcaCcaT33AY.46.20.001906
ORF3a78H78HcaCcaT33AY.540.000286
ORF3a78H78YCacTac33AY.620.001307
ORF3a78H78HcaCcaT33AY.650.001599
ORF3a78H78YCacTac33AY.670.001393
ORF3a78H78YCacTac33AY.680.000821
ORF3a78H78HcaCcaT33AY.780.004622
ORF3a78H78YCacTac33AY.99.20.000276
ORF3a78H78HcaCcaT33B0.000383
ORF3a78H78NCacAac33B.10.000027
ORF3a78H78QcaCcaG33B.10.000027
ORF3a78H78HcaCcaT33B.1.1.2030.050847
ORF3a78H78HcaCcaT33B.1.1.2160.002671
ORF3a78H78HcaCcaT33B.1.1.2740.015152
ORF3a78H78YCacTac33B.1.1.2800.009259
ORF3a78H78YCacTac33B.1.1.3160.002775
ORF3a78H78HcaCcaT33B.1.1.3180.000905
ORF3a78H78YCacTac33B.1.1.3690.001339
ORF3a78H78HcaCcaT33B.1.1.4330.004274
ORF3a78H78YCacTac33B.1.1.4640.004418
ORF3a78H78YCacTac33B.1.1110.003525
ORF3a78H78RcAccGc33B.1.1770.00004
ORF3a78H78YCacTac33B.1.177.100.002634
ORF3a78H78HcaCcaT33B.1.177.560.002003
ORF3a78H78RcAccGc33B.1.177.600.000655
ORF3a78H78HcaCcaT33B.1.177.70.000495
ORF3a78H78HcaCcaT33B.1.177.790.007026
ORF3a78H78HcaCcaT33B.1.177.860.00055
ORF3a78H78YCacTac33B.1.2320.001612
ORF3a78H78YCacTac33B.1.2400.000647
ORF3a78H78YCacTac33B.1.258.20.013514
ORF3a78H78QcaCcaA33B.1.36.310.005254
ORF3a78H78YCacTac33B.1.3610.003866
ORF3a78H78YCacTac33B.1.3690.000856
ORF3a78H78YCacTac33B.1.3890.003006
ORF3a78H78NCacAac33B.1.4000.001287
ORF3a78H78HcaCcaT33B.1.4000.001287
ORF3a78H78YCacTac33B.1.4090.002344
ORF3a78H78QcaCcaA33B.1.438.10.000322
ORF3a78H78DCacGac33B.1.5170.001281
ORF3a78H78HcaCcaT33B.1.5950.000783
ORF3a78H78YCacTac33B.1.6090.001438
ORF3a78H78delCAC---33B.1.617.20.000011
ORF3a78H78YCacTac33C.160.003181
ORF3a78H78YCacTac33C.260.022059
ORF3a78H78YCacTac33C.36.30.001702
ORF3a78H78HcaCcaT33C.370.000348
ORF3a78H78HcaCcaT33P.1.120.001452
ORF3a78H78HcaCcaT33Q.80.000495
ORF3a78H78delCAC---33U.30.011583
ORF3a78H78HcaCcaT220.111111
ORF3a78H78HcaCcaT22A.10.000564
ORF3a78H78YCacTac22A.20.001324
ORF3a78H78YCacTac22AD.20.000438
ORF3a78H78HcaCcaT22AD.20.000438
ORF3a78H78SCAcTCc22All0
ORF3a78H78YCacTac22AU.10.002532
ORF3a78H78HcaCcaT22AY.1000.000092
ORF3a78H78LcAccTc22AY.1020.000053
ORF3a78H78YCacTac22AY.1050.001286
ORF3a78H78HcaCcaT22AY.1060.00067
ORF3a78H78YCacTac22AY.1070.000932
ORF3a78H78YCacTac22AY.1080.002205
ORF3a78H78YCacTac22AY.120.20.002571
ORF3a78H78YCacTac22AY.160.000759
ORF3a78H78delCAC---22AY.230.000139
ORF3a78H78YCacTac22AY.23.10.000835
ORF3a78H78HcaCcaT22AY.240.000862
ORF3a78H78DCacGac22AY.250.000012
ORF3a78H78YCacTac22AY.3.10.000171
ORF3a78H78YCacTac22AY.370.000632
ORF3a78H78LcAccTc22AY.40.000003
ORF3a78H78delCAC---22AY.40.000003
ORF3a78H78delCAC---22AY.4.50.000215
ORF3a78H78HcaCcaT22AY.400.001929
ORF3a78H78YCacTac22AY.410.000588
ORF3a78H78delCAC---22AY.430.000009
ORF3a78H78QcaCcaA22AY.430.000009
ORF3a78H78YCacTac22AY.480.00093
ORF3a78H78YCacTac22AY.5.30.000675
ORF3a78H78YCacTac22AY.570.001312
ORF3a78H78HcaCcaT22AY.590.001059
ORF3a78H78HcaCcaT22AY.620.000871
ORF3a78H78HcaCcaT22AY.680.000547
ORF3a78H78HcaCcaT22AY.790.002421
ORF3a78H78YCacTac22AY.850.000854
ORF3a78H78HcaCcaT22AY.930.000546
ORF3a78H78delCAC---22B.10.000018
ORF3a78H78YCacTac22B.1.1.100.00223
ORF3a78H78HcaCcaT22B.1.1.1700.002494
ORF3a78H78YCacTac22B.1.1.1980.002937
ORF3a78H78YCacTac22B.1.1.2290.011494
ORF3a78H78YCacTac22B.1.1.2310.006192
ORF3a78H78YCacTac22B.1.1.2580.006515
ORF3a78H78YCacTac22B.1.1.2630.003115
ORF3a78H78YCacTac22B.1.1.2940.002532
ORF3a78H78HcaCcaT22B.1.1.3060.000877
ORF3a78H78YCacTac22B.1.1.330.000842
ORF3a78H78HcaCcaT22B.1.1.330.000842
ORF3a78H78YCacTac22B.1.1.3480.001592
ORF3a78H78YCacTac22B.1.1.370.000386
ORF3a78H78YCacTac22B.1.1.3750.02381
ORF3a78H78YCacTac22B.1.1.3910.017094
ORF3a78H78YCacTac22B.1.1.4070.083333
ORF3a78H78YCacTac22B.1.1.4340.000697
ORF3a78H78HcaCcaT22B.1.1.4560.111111
ORF3a78H78YCacTac22B.1.1.530.027397
ORF3a78H78SCAcTCc22B.1.1.70.000002
ORF3a78H78del2CAc--c12B.1.1.70.000001
ORF3a78H78LcAccTc12B.1.1.70.000001
ORF3a78H78del2cACc--12B.1.1.70.000001
ORF3a78H78LcACcTT12B.1.1.70.000001
ORF3a78H78HcaCcaT22B.1.1280.001271
ORF3a78H78HcaCcaT22B.1.177.330.003289
ORF3a78H78YCacTac22B.1.177.440.001038
ORF3a78H78YCacTac22B.1.177.730.001133
ORF3a78H78HcaCcaT22B.1.177.730.001133
ORF3a78H78YCacTac22B.1.177.820.000955
ORF3a78H78YCacTac22B.1.177.860.000367
ORF3a78H78RcAccGc22B.1.20.000018
ORF3a78H78HcaCcaT22B.1.2390.002442
ORF3a78H78HcaCcaT22B.1.2410.001623
ORF3a78H78YCacTac22B.1.258.110.000793
ORF3a78H78YCacTac22B.1.258.30.00335
ORF3a78H78YCacTac22B.1.258.70.003824
ORF3a78H78HcaCcaT22B.1.2810.043478
ORF3a78H78HcaCcaT22B.1.3110.000549
ORF3a78H78HcaCcaT22B.1.3360.004878
ORF3a78H78YCacTac22B.1.36.160.002849
ORF3a78H78YCacTac22B.1.36.220.002415
ORF3a78H78YCacTac22B.1.36.380.003284
ORF3a78H78YCacTac22B.1.3990.003868
ORF3a78H78NCacAac22B.1.4270.000101
ORF3a78H78HcaCcaT22B.1.4450.023529
ORF3a78H78HcaCcaT22B.1.4970.00063
ORF3a78H78YCacTac22B.1.4970.00063
ORF3a78H78YCacTac22B.1.4990.002101
ORF3a78H78YCacTac22B.1.5260.000047
ORF3a78H78YCacTac22B.1.5560.015038
ORF3a78H78YCacTac22B.1.5650.001621
ORF3a78H78HcaCcaT22B.1.5750.000607
ORF3a78H78HcaCcaT22B.1.575.10.004878
ORF3a78H78YCacTac22B.1.5770.001375
ORF3a78H78HcaCcaT22B.1.5770.001375
ORF3a78H78DCacGac22B.1.5960.000174
ORF3a78H78HcaCcaT22B.1.6190.001742
ORF3a78H78YCacTac22B.1.6270.00404
ORF3a78H78HcaCcaT22B.1.6310.006734
ORF3a78H78YCacTac22B.1.930.001867
ORF3a78H78HcaCcaT22B.400.000729
ORF3a78H78YCacTac22C.350.001548
ORF3a78H78HcaCcaT22C.37.10.005236
ORF3a78H78YCacTac22C.380.016129
ORF3a78H78RcAccGc22P.10.000032
ORF3a78H78YCaCTaT22Q.20.001227
ORF3a78H78HcaCcaT22W.40.002703
ORF3a78H78QcaCcaA110.055556
ORF3a78H78YCacTac11A0.000387
ORF3a78H78HcaCcaT11A0.000387
ORF3a78H78NCacAac11A.2.50.000499
ORF3a78H78HcaCcaT11A.2.5.20.001572
ORF3a78H78YCacTac11AA.40.009091
ORF3a78H78LcAccTc11AD.20.000219
ORF3a78H78HcaCcaT11AE.70.083333
ORF3a78H78delCAC---11AH.30.003802
ORF3a78H78RcAccGc11AL.10.012987
ORF3a78H78YCacTac11AM.40.003571
ORF3a78H78HcaCcaT11AY.10.000396
ORF3a78H78RcAccGc11AY.10.000396
ORF3a78H78YCacTac11AY.100.00053
ORF3a78H78HcaCcaT11AY.1010.00049
ORF3a78H78LcAccTc11AY.1030.000006
ORF3a78H78DCacGac11AY.1030.000006
ORF3a78H78YCacTac11AY.1040.001984
ORF3a78H78HcaCcaT11AY.1040.001984
ORF3a78H78HcaCcaT11AY.1080.001103
ORF3a78H78HcaCcaT11AY.110.001339
ORF3a78H78YCacTac11AY.110.001339
ORF3a78H78HcaCcaT11AY.1100.000113
ORF3a78H78delCAC---11AY.1110.000183
ORF3a78H78HcaCcaT11AY.1130.000142
ORF3a78H78YCacTac11AY.1140.000231
ORF3a78H78HcaCcaT11AY.120.000316
ORF3a78H78QcaCcaA11AY.1200.000037
ORF3a78H78HcaCcaT11AY.130.000161
ORF3a78H78HcaCcaT11AY.140.000088
ORF3a78H78HcaCcaT11AY.160.00038
ORF3a78H78HcaCcaT11AY.16.10.00047
ORF3a78H78YCacTac11AY.20.000356
ORF3a78H78DCacGac11AY.200.000039
ORF3a78H78HcaCcaT11AY.210.001898
ORF3a78H78LcAccTc11AY.230.00007
ORF3a78H78QcaCcaA11AY.250.000006
ORF3a78H78delCAC---11AY.250.000006
ORF3a78H78RcAccGc11AY.260.000028
ORF3a78H78YCacTac11AY.270.000065
ORF3a78H78del2cACc--11AY.290.000016
ORF3a78H78HcaCcaT11AY.29.10.000221
ORF3a78H78NCacAac11AY.30.00001
ORF3a78H78QcaCcaG11AY.30.00001
ORF3a78H78HcaCcaT11AY.320.000532
ORF3a78H78delCAC---11AY.330.000067
ORF3a78H78HcaCcaT11AY.340.000097
ORF3a78H78delCAC---11AY.390.000025
ORF3a78H78HcaCcaT11AY.39.1.10.000725
ORF3a78H78DCacGac11AY.40.000002
ORF3a78H78HcaCcaT11AY.4.2.10.000149
ORF3a78H78YCacTac11AY.4.40.000409
ORF3a78H78YCacTac11AY.4.50.000107
ORF3a78H78LcAccTc11AY.430.000004
ORF3a78H78DCacGac11AY.440.000006
ORF3a78H78RcAccGc11AY.440.000006
ORF3a78H78NCacAac11AY.450.000122
ORF3a78H78YCacTac11AY.46.20.000635
ORF3a78H78DCacGac11AY.46.20.000635
ORF3a78H78HcaCcaT11AY.46.30.000934
ORF3a78H78HcaCcaT11AY.480.000465
ORF3a78H78QcaCcaA11AY.50.000021
ORF3a78H78DCacGac11AY.50.000021
ORF3a78H78HcaCcaT11AY.5.30.000337
ORF3a78H78YCacTac11AY.5.40.000277
ORF3a78H78HcaCcaT11AY.510.000909
ORF3a78H78YCacTac11AY.530.000288
ORF3a78H78RcAccGc11AY.540.000095
ORF3a78H78YCacTac11AY.550.000917
ORF3a78H78HcaCcaT11AY.550.000917
ORF3a78H78HcaCcaT11AY.610.000105
ORF3a78H78QcaCcaA11AY.620.000436
ORF3a78H78HcaCcaT11AY.670.000464
ORF3a78H78HcaCcaT11AY.690.000187
ORF3a78H78DCacGac11AY.70.000196
ORF3a78H78YCacTac11AY.7.10.000113
ORF3a78H78YCacTac11AY.710.000475
ORF3a78H78HcaCcaT11AY.710.000475
ORF3a78H78HcaCcaT11AY.720.001361
ORF3a78H78YCacTac11AY.740.000116
ORF3a78H78HcaCcaT11AY.740.000116
ORF3a78H78NCacAac11AY.750.000056
ORF3a78H78YCacTac11AY.760.004831
ORF3a78H78HcaCcaT11AY.770.001127
ORF3a78H78YCacTac11AY.80.000606
ORF3a78H78YCacTac11AY.810.001992
ORF3a78H78del1Cac-ac11AY.820.001357
ORF3a78H78HcaCcaT11AY.840.000437
ORF3a78H78YCacTac11AY.870.000833
ORF3a78H78HcaCcaT11AY.880.000884
ORF3a78H78QcaCcaA11AY.90.000068
ORF3a78H78RcAccGc11AY.950.000761
ORF3a78H78HcaCcaT11AY.980.000079
ORF3a78H78DCacGac11AY.98.10.000048
ORF3a78H78HcaCcaT11AY.990.001049
ORF3a78H78YCacTac11AY.990.001049
ORF3a78H78RcAccGc11AY.99.20.000092
ORF3a78H78HcaCcaT11AZ.10.000867
ORF3a78H78HcaCcaT11AZ.30.00152
ORF3a78H78RcAccGc11B0.000128
ORF3a78H78QcaCcaA11B.1.10.000018
ORF3a78H78DCacGac11B.1.10.000018
ORF3a78H78YCacTac11B.1.1.1010.01
ORF3a78H78YCacTac11B.1.1.120.007463
ORF3a78H78HcaCcaT11B.1.1.1210.002427
ORF3a78H78YCacTac11B.1.1.1410.002012
ORF3a78H78YCacTac11B.1.1.1570.000913
ORF3a78H78HcaCcaT11B.1.1.1580.012195
ORF3a78H78YCacTac11B.1.1.1610.003534
ORF3a78H78HcaCcaT11B.1.1.1610.003534
ORF3a78H78HcaCcaT11B.1.1.1740.003378
ORF3a78H78YCacTac11B.1.1.2000.007463
ORF3a78H78NCacAac11B.1.1.2020.076923
ORF3a78H78YCacTac11B.1.1.2200.001859
ORF3a78H78YCaCTaT11B.1.1.2210.010101
ORF3a78H78NCacAac11B.1.1.2220.000204
ORF3a78H78HcaCcaT11B.1.1.2270.004348
ORF3a78H78HcaCcaT11B.1.1.2290.005747
ORF3a78H78delCAC---11B.1.1.2360.006897
ORF3a78H78HcaCcaT11B.1.1.250.000569
ORF3a78H78HcaCcaT11B.1.1.2650.003155
ORF3a78H78YCacTac11B.1.1.2690.001353
ORF3a78H78YCacTac11B.1.1.2750.011236
ORF3a78H78HcaCcaT11B.1.1.2770.000759
ORF3a78H78YCacTac11B.1.1.2790.001121
ORF3a78H78HcaCcaT11B.1.1.2790.001121
ORF3a78H78HcaCcaT11B.1.1.280.000311
ORF3a78H78HcaCcaT11B.1.1.2840.000107
ORF3a78H78YCacTac11B.1.1.2900.018182
ORF3a78H78YCacTac11B.1.1.3010.001179
ORF3a78H78HcaCcaT11B.1.1.3020.002075
ORF3a78H78YCacTac11B.1.1.3120.001912
ORF3a78H78YCacTac11B.1.1.3170.000412
ORF3a78H78HcaCcaT11B.1.1.3220.008772
ORF3a78H78YCacTac11B.1.1.3220.008772
ORF3a78H78YCacTac11B.1.1.3350.012987
ORF3a78H78HcaCcaT11B.1.1.3480.000796
ORF3a78H78HcaCcaT11B.1.1.3490.010309
ORF3a78H78HcaCcaT11B.1.1.3570.125
ORF3a78H78QcaCcaA11B.1.1.3630.005988
ORF3a78H78YCacTac11B.1.1.3710.010417
ORF3a78H78YCacTac11B.1.1.3720.000689
ORF3a78H78HcaCcaT11B.1.1.3780.007299
ORF3a78H78HcaCcaT11B.1.1.3850.004464
ORF3a78H78HcaCcaT11B.1.1.3880.045455
ORF3a78H78YCacTac11B.1.1.3970.002252
ORF3a78H78YCacTac11B.1.1.3980.003226
ORF3a78H78HcaCcaT11B.1.1.40.002976
ORF3a78H78YCacTac11B.1.1.4060.006494
ORF3a78H78delCAC---11B.1.1.4090.002833
ORF3a78H78HcaCcaT11B.1.1.4090.002833
ORF3a78H78YCacTac11B.1.1.4120.007634
ORF3a78H78HcaCcaT11B.1.1.4160.000905
ORF3a78H78HcaCcaT11B.1.1.4320.001266
ORF3a78H78YCacTac11B.1.1.4330.001425
ORF3a78H78YCacTac11B.1.1.4480.002033
ORF3a78H78HcaCcaT11B.1.1.4490.022727
ORF3a78H78YCacTac11B.1.1.4490.022727
ORF3a78H78DCacGac11B.1.1.4520.111111
ORF3a78H78YCacTac11B.1.1.470.005348
ORF3a78H78HcaCcaT11B.1.1.510.001718
ORF3a78H78QcaCcaA11B.1.1.5190.00004
ORF3a78H78YCacTac11B.1.1.5260.003546
ORF3a78H78HcaCcaT11B.1.1.5280.004808
ORF3a78H78YCacTac11B.1.1.590.006494
ORF3a78H78HcaCcaT11B.1.1.630.000386
ORF3a78H78PcAccCc11B.1.1.70.000001
ORF3a78H78del1Cac-ac11B.1.1.70.000001
ORF3a78H78PcAccCc11B.1.1.700.000341
ORF3a78H78YCacTac11B.1.1.700.000341
ORF3a78H78YCacTac11B.1.1.890.006061
ORF3a78H78HcaCcaT11B.1.110.30.000718
ORF3a78H78QcaCcaG11B.1.1110.001175
ORF3a78H78YCacTac11B.1.1260.001276
ORF3a78H78YCacTac11B.1.130.002375
ORF3a78H78QcaCcaA11B.1.1390.000733
ORF3a78H78HcaCcaT11B.1.1420.002899
ORF3a78H78HcaCcaT11B.1.160.160.000929
ORF3a78H78DCacGac11B.1.160.160.000929
ORF3a78H78YCacTac11B.1.160.220.006757
ORF3a78H78HcaCcaT11B.1.1620.005025
ORF3a78H78LcAccTc11B.1.1770.000013
ORF3a78H78del1caCca-11B.1.1770.000013
ORF3a78H78YCacTac11B.1.177.120.000152
ORF3a78H78YCacTac11B.1.177.150.000631
ORF3a78H78delCAC---11B.1.177.170.000821
ORF3a78H78YCacTac11B.1.177.180.00116
ORF3a78H78HcaCcaT11B.1.177.190.001431
ORF3a78H78YCacTac11B.1.177.320.00135
ORF3a78H78YCacTac11B.1.177.40.000211
ORF3a78H78HcaCcaT11B.1.177.40.000211
ORF3a78H78HcaCcaT11B.1.177.430.001477
ORF3a78H78HcaCcaT11B.1.177.440.000519
ORF3a78H78YCacTac11B.1.177.520.001757
ORF3a78H78YCacTac11B.1.177.570.000281
ORF3a78H78YCacTac11B.1.177.580.001332
ORF3a78H78YCacTac11B.1.177.60.000977
ORF3a78H78YCacTac11B.1.177.750.001041
ORF3a78H78HcaCcaT11B.1.177.760.002494
ORF3a78H78YCacTac11B.1.177.770.000726
ORF3a78H78YCacTac11B.1.177.80.000752
ORF3a78H78HcaCcaT11B.1.177.810.000189
ORF3a78H78HcaCcaT11B.1.177.820.000477
ORF3a78H78HcaCcaT11B.1.177.830.001481
ORF3a78H78YCacTac11B.1.177.850.005435
ORF3a78H78YCacTac11B.1.1950.005025
ORF3a78H78HcaCcaT11B.1.2060.000816
ORF3a78H78HcaCcaT11B.1.2100.002132
ORF3a78H78YCacTac11B.1.2100.002132
ORF3a78H78HcaCcaT11B.1.2350.002519
ORF3a78H78YCacTac11B.1.2350.002519
ORF3a78H78HcaCcaT11B.1.2400.000216
ORF3a78H78HcaCcaT11B.1.2480.029412
ORF3a78H78YCacTac11B.1.258.100.011364
ORF3a78H78YCacTac11B.1.258.120.007874
ORF3a78H78YCacTac11B.1.258.220.002667
ORF3a78H78QcaCcaG11B.1.2670.018519
ORF3a78H78YCacTac11B.1.2700.005618
ORF3a78H78YCacTac11B.1.30.002618
ORF3a78H78HcaCcaT11B.1.3010.005917
ORF3a78H78YCacTac11B.1.3130.006579
ORF3a78H78YCacTac11B.1.3240.001605
ORF3a78H78HcaCcaT11B.1.3490.000715
ORF3a78H78DCacGac11B.1.3510.00003
ORF3a78H78QcaCcaG11B.1.3510.00003
ORF3a78H78RcAccGc11B.1.3510.00003
ORF3a78H78HcaCcaT11B.1.351.30.000876
ORF3a78H78YCacTac11B.1.3560.001727
ORF3a78H78HcaCcaT11B.1.36.10.00114
ORF3a78H78YCacTac11B.1.36.10.00114
ORF3a78H78RcAccGc11B.1.36.290.000517
ORF3a78H78YCacTac11B.1.36.350.002604
ORF3a78H78YCacTac11B.1.36.80.001
ORF3a78H78QcaCcaG11B.1.36.80.001
ORF3a78H78YCacTac11B.1.3670.000792
ORF3a78H78HcaCcaT11B.1.3780.006849
ORF3a78H78YCacTac11B.1.3800.006623
ORF3a78H78YCacTac11B.1.3910.001127
ORF3a78H78YCacTac11B.1.4040.001302
ORF3a78H78HcaCcaT11B.1.4090.000781
ORF3a78H78NCacAac11B.1.4150.014286
ORF3a78H78YCacTac11B.1.4210.007463
ORF3a78H78HcaCcaT11B.1.4250.002994
ORF3a78H78DCacGac11B.1.4270.00005
ORF3a78H78HcaCcaT11B.1.4280.00102
ORF3a78H78QcaCcaA11B.1.4290.000024
ORF3a78H78YCacTac11B.1.4320.011236
ORF3a78H78HcaCcaT11B.1.4330.003195
ORF3a78H78HcaCcaT11B.1.4410.009615
ORF3a78H78YCacTac11B.1.4430.004673
ORF3a78H78HcaCcaT11B.1.4520.013699
ORF3a78H78HcaCcaT11B.1.4530.003236
ORF3a78H78HcaCcaT11B.1.4560.003268
ORF3a78H78HcaCcaT11B.1.5090.000866
ORF3a78H78HcaCcaT11B.1.5100.026316
ORF3a78H78YCacTac11B.1.5170.000427
ORF3a78H78YCacTac11B.1.5240.001406
ORF3a78H78HcaCcaT11B.1.5250.000113
ORF3a78H78YCacTac11B.1.5270.003704
ORF3a78H78YCacTac11B.1.5390.017544
ORF3a78H78HcaCcaT11B.1.5510.00129
ORF3a78H78YCacTac11B.1.5580.004566
ORF3a78H78YCacTac11B.1.5610.000397
ORF3a78H78YCacTac11B.1.5700.002941
ORF3a78H78HcaCcaT11B.1.5700.002941
ORF3a78H78HcaCcaT11B.1.5760.000907
ORF3a78H78delCAC---11B.1.5850.027778
ORF3a78H78HcaCcaT11B.1.5880.00091
ORF3a78H78YCacTac11B.1.5930.01087
ORF3a78H78YCacTac11B.1.6060.006024
ORF3a78H78HcaCcaT11B.1.6090.000479
ORF3a78H78HcaCcaT11B.1.617.10.000129
ORF3a78H78DCacGac11B.1.617.10.000129
ORF3a78H78PcACcCT11B.1.617.20.000004
ORF3a78H78del1caCca-11B.1.617.20.000004
ORF3a78H78YCacTac11B.1.617.30.002985
ORF3a78H78delCAC---11B.1.6270.00202
ORF3a78H78YCacTac11B.1.6340.003425
ORF3a78H78YCacTac11B.1.6360.006711
ORF3a78H78delCAC---11B.1.6380.052632
ORF3a78H78YCacTac11B.1.780.008547
ORF3a78H78YCacTac11B.1.80.001972
ORF3a78H78YCacTac11B.1.90.006173
ORF3a78H78YCacTac11B.1.960.018868
ORF3a78H78HcaCcaT11B.30.000831
ORF3a78H78YCacTac11B.520.010101
ORF3a78H78HcaCcaT11C.10.002392
ORF3a78H78YCacTac11C.140.004329
ORF3a78H78HcaCcaT11C.160.00106
ORF3a78H78YCacTac11C.170.055556
ORF3a78H78HcaCcaT11C.230.005814
ORF3a78H78YCacTac11C.300.001727
ORF3a78H78YCacTac11C.340.037037
ORF3a78H78HcaCcaT11C.36.30.000567
ORF3a78H78YCacTac11C.390.018868
ORF3a78H78YCacTac11C.50.090909
ORF3a78H78DCacGac11D.20.000075
ORF3a78H78YCacTac11L.30.003546
ORF3a78H78YCacTac11N.50.001767
ORF3a78H78HcaCcaT11N.50.001767
ORF3a78H78HcaCcaT11N.60.007092
ORF3a78H78QcaCcaA11P.10.000016
ORF3a78H78YCacTac11P.1.120.000484
ORF3a78H78delCAC---11P.1.150.000232
ORF3a78H78HcaCcaT11P.1.160.000374
ORF3a78H78YCacTac11P.1.160.000374
ORF3a78H78YCacTac11P.1.170.000162
ORF3a78H78HcaCcaT11Z.10.00289