CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 78 | H78Y | nonsyn | Cac | Tac | 15416 | 15382 | 0.997795 | 25624-25626 | |
ORF3a | 78 | H78Y | nonsyn | CaC | TaT | 15416 | 34 | 0.0022055 | 25624-25626 | |
ORF3a | 78 | H78H | syn | caC | caT | 14826 | 14826 | 1 | 25624-25626 | |
ORF3a | 78 | H78Q | nonsyn | caC | caA | 275 | 248 | 0.901818 | 25624-25626 | |
ORF3a | 78 | H78Q | nonsyn | caC | caG | 275 | 27 | 0.0981818 | 25624-25626 | |
ORF3a | 78 | H78R | nonsyn | cAc | cGc | 163 | 163 | 1 | 25624-25626 | |
ORF3a | 78 | H78D | nonsyn | Cac | Gac | 93 | 92 | 0.989247 | 25624-25626 | |
ORF3a | 78 | H78D | nonsyn | CaC | GaT | 93 | 1 | 0.0107527 | 25624-25626 | |
ORF3a | 78 | H78L | nonsyn | cAc | cTc | 50 | 49 | 0.98 | 25624-25626 | |
ORF3a | 78 | H78L | nonsyn | cAC | cTT | 50 | 1 | 0.02 | 25624-25626 | |
ORF3a | 78 | H78del | del | CAC | --- | 47 | 47 | 1 | 25624-25626 | |
ORF3a | 78 | H78N | nonsyn | Cac | Aac | 19 | 19 | 1 | 25624-25626 | |
ORF3a | 78 | H78P | nonsyn | cAc | cCc | 7 | 4 | 0.571429 | 25624-25626 | |
ORF3a | 78 | H78P | nonsyn | cAC | cCT | 7 | 3 | 0.428571 | 25624-25626 | |
ORF3a | 78 | H78del1 | del | caC | ca- | 4 | 2 | 0.5 | 25624-25626 | |
ORF3a | 78 | H78del1 | del | Cac | -ac | 4 | 2 | 0.5 | 25624-25626 | |
ORF3a | 78 | H78del2 | del | cAC | c-- | 3 | 2 | 0.666667 | 25624-25626 | |
ORF3a | 78 | H78del2 | del | CAc | --c | 3 | 1 | 0.333333 | 25624-25626 | |
ORF3a | 78 | H78S | nonsyn | CAc | TCc | 2 | 2 | 1 | 25624-25626 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 78 | H78Y | Cac | Tac | 15382 | 15416 | All | 0.002942 |
ORF3a | 78 | H78Y | CaC | TaT | 34 | 15416 | All | 0.000007 |
ORF3a | 78 | H78H | caC | caT | 14826 | 14826 | All | 0.002836 |
ORF3a | 78 | H78H | caC | caT | 5191 | 5191 | B.1.1.7 | 0.004647 |
ORF3a | 78 | H78Y | Cac | Tac | 3327 | 3340 | B.1.1.7 | 0.002978 |
ORF3a | 78 | H78Y | CaC | TaT | 13 | 3340 | B.1.1.7 | 0.000012 |
ORF3a | 78 | H78Y | Cac | Tac | 1784 | 1784 | AY.43 | 0.007904 |
ORF3a | 78 | H78H | caC | caT | 1628 | 1628 | Q.2 | 0.998773 |
ORF3a | 78 | H78Y | Cac | Tac | 1217 | 1217 | AY.4 | 0.001894 |
ORF3a | 78 | H78H | caC | caT | 1082 | 1082 | AY.75 | 0.060616 |
ORF3a | 78 | H78Y | Cac | Tac | 798 | 798 | B.1.258 | 0.053104 |
ORF3a | 78 | H78H | caC | caT | 676 | 676 | AY.47 | 0.021027 |
ORF3a | 78 | H78H | caC | caT | 636 | 636 | Q.1 | 0.080344 |
ORF3a | 78 | H78Y | Cac | Tac | 614 | 615 | B.1.1.486 | 0.968454 |
ORF3a | 78 | H78Y | CaC | TaT | 1 | 615 | B.1.1.486 | 0.001577 |
ORF3a | 78 | H78H | caC | caT | 611 | 611 | AY.43 | 0.002707 |
ORF3a | 78 | H78Y | Cac | Tac | 550 | 550 | AY.103 | 0.003415 |
ORF3a | 78 | H78H | caC | caT | 518 | 518 | B.1.1.288 | 0.992337 |
ORF3a | 78 | H78H | caC | caT | 433 | 433 | B.1.2 | 0.003813 |
ORF3a | 78 | H78H | caC | caT | 422 | 422 | AY.44 | 0.002569 |
ORF3a | 78 | H78Y | Cac | Tac | 404 | 404 | B.1.617.2 | 0.001521 |
ORF3a | 78 | H78H | caC | caT | 389 | 389 | AY.4 | 0.000605 |
ORF3a | 78 | H78Y | Cac | Tac | 388 | 388 | B.1.177 | 0.005109 |
ORF3a | 78 | H78H | caC | caT | 339 | 339 | B.1.617.2 | 0.001276 |
ORF3a | 78 | H78Y | Cac | Tac | 323 | 331 | B.1.2 | 0.002844 |
ORF3a | 78 | H78Y | CaC | TaT | 8 | 331 | B.1.2 | 0.00007 |
ORF3a | 78 | H78Y | Cac | Tac | 303 | 303 | AY.56 | 0.486356 |
ORF3a | 78 | H78Y | Cac | Tac | 277 | 277 | B.1.221 | 0.019676 |
ORF3a | 78 | H78Q | caC | caA | 248 | 275 | All | 0.000047 |
ORF3a | 78 | H78Q | caC | caG | 27 | 275 | All | 0.000005 |
ORF3a | 78 | H78Y | Cac | Tac | 273 | 273 | AY.95 | 0.207763 |
ORF3a | 78 | H78Y | Cac | Tac | 234 | 234 | AY.120 | 0.0087 |
ORF3a | 78 | H78Y | Cac | Tac | 207 | 213 | B.1 | 0.001896 |
ORF3a | 78 | H78Y | CaC | TaT | 6 | 213 | B.1 | 0.000055 |
ORF3a | 78 | H78H | caC | caT | 210 | 210 | B.1.1.294 | 0.265823 |
ORF3a | 78 | H78Y | Cac | Tac | 206 | 206 | B.1.243 | 0.014334 |
ORF3a | 78 | H78H | caC | caT | 197 | 197 | B.1.429 | 0.004635 |
ORF3a | 78 | H78H | caC | caT | 181 | 181 | P.1 | 0.002851 |
ORF3a | 78 | H78Y | Cac | Tac | 176 | 176 | AY.3 | 0.001751 |
ORF3a | 78 | H78R | cAc | cGc | 163 | 163 | All | 0.000031 |
ORF3a | 78 | H78Y | Cac | Tac | 156 | 156 | AY.44 | 0.00095 |
ORF3a | 78 | H78H | caC | caT | 152 | 152 | AY.103 | 0.000944 |
ORF3a | 78 | H78Y | Cac | Tac | 151 | 151 | AY.26 | 0.004275 |
ORF3a | 78 | H78Y | Cac | Tac | 150 | 150 | C.2.1 | 1 |
ORF3a | 78 | H78Y | Cac | Tac | 146 | 146 | P.1 | 0.0023 |
ORF3a | 78 | H78H | caC | caT | 145 | 145 | P.2 | 0.027062 |
ORF3a | 78 | H78H | caC | caT | 142 | 142 | B.1 | 0.001301 |
ORF3a | 78 | H78Y | Cac | Tac | 138 | 138 | AY.25 | 0.00083 |
ORF3a | 78 | H78Y | Cac | Tac | 133 | 133 | AY.116 | 0.038142 |
ORF3a | 78 | H78Y | Cac | Tac | 118 | 118 | B.1.1.28 | 0.036726 |
ORF3a | 78 | H78Y | Cac | Tac | 109 | 109 | B.1.1 | 0.001977 |
ORF3a | 78 | H78H | caC | caT | 108 | 108 | B.1.1 | 0.001959 |
ORF3a | 78 | H78Y | Cac | Tac | 106 | 106 | AY.102 | 0.00281 |
ORF3a | 78 | H78Y | Cac | Tac | 103 | 103 | B.1.351 | 0.003062 |
ORF3a | 78 | H78H | caC | caT | 101 | 101 | B.1.177 | 0.00133 |
ORF3a | 78 | H78Y | Cac | Tac | 97 | 100 | AY.47 | 0.003017 |
ORF3a | 78 | H78Y | CaC | TaT | 3 | 100 | AY.47 | 0.000093 |
ORF3a | 78 | H78Y | Cac | Tac | 95 | 95 | B.1.429 | 0.002235 |
ORF3a | 78 | H78D | Cac | Gac | 92 | 93 | All | 0.000018 |
ORF3a | 78 | H78D | CaC | GaT | 1 | 93 | All | 0 |
ORF3a | 78 | H78H | caC | caT | 93 | 93 | B.1.603 | 0.989362 |
ORF3a | 78 | H78Y | Cac | Tac | 88 | 88 | AY.14 | 0.007745 |
ORF3a | 78 | H78H | caC | caT | 88 | 88 | AY.3 | 0.000875 |
ORF3a | 78 | H78H | caC | caT | 87 | 87 | B.1.177.60 | 0.019004 |
ORF3a | 78 | H78H | caC | caT | 85 | 85 | AY.102 | 0.002254 |
ORF3a | 78 | H78H | caC | caT | 84 | 84 | AY.25 | 0.000505 |
ORF3a | 78 | H78Y | Cac | Tac | 81 | 81 | AY.4.2 | 0.001757 |
ORF3a | 78 | H78Q | caC | caA | 79 | 79 | AY.119 | 0.002789 |
ORF3a | 78 | H78H | caC | caT | 66 | 66 | AY.46.1 | 0.067762 |
ORF3a | 78 | H78Y | Cac | Tac | 65 | 65 | AY.29 | 0.001025 |
ORF3a | 78 | H78H | caC | caT | 62 | 62 | AY.4.2 | 0.001345 |
ORF3a | 78 | H78Y | Cac | Tac | 60 | 60 | B.1.258.14 | 0.058824 |
ORF3a | 78 | H78Y | Cac | Tac | 60 | 60 | P.1.13 | 0.053908 |
ORF3a | 78 | H78Y | Cac | Tac | 57 | 57 | AY.121 | 0.007713 |
ORF3a | 78 | H78Y | Cac | Tac | 57 | 57 | B.1.438.1 | 0.006114 |
ORF3a | 78 | H78Y | Cac | Tac | 55 | 55 | AY.36 | 0.008152 |
ORF3a | 78 | H78Y | Cac | Tac | 55 | 55 | AY.9.2 | 0.00202 |
ORF3a | 78 | H78Y | Cac | Tac | 53 | 53 | AY.98 | 0.004187 |
ORF3a | 78 | H78Y | Cac | Tac | 52 | 52 | AY.98.1 | 0.002518 |
ORF3a | 78 | H78Y | Cac | Tac | 51 | 51 | Q.3 | 0.007397 |
ORF3a | 78 | H78L | cAc | cTc | 49 | 50 | All | 0.000009 |
ORF3a | 78 | H78L | cAC | cTT | 1 | 50 | All | 0 |
ORF3a | 78 | H78D | Cac | Gac | 49 | 50 | B.1.1.7 | 0.000044 |
ORF3a | 78 | H78D | CaC | GaT | 1 | 50 | B.1.1.7 | 0.000001 |
ORF3a | 78 | H78Q | caC | caA | 48 | 49 | AY.44 | 0.000292 |
ORF3a | 78 | H78Q | caC | caG | 1 | 49 | AY.44 | 0.000006 |
ORF3a | 78 | H78Y | Cac | Tac | 48 | 48 | AY.5 | 0.000991 |
ORF3a | 78 | H78Y | Cac | Tac | 48 | 48 | B.1.525 | 0.005432 |
ORF3a | 78 | H78Y | Cac | Tac | 47 | 47 | A.23.1 | 0.033099 |
ORF3a | 78 | H78del | CAC | --- | 47 | 47 | All | 0.000009 |
ORF3a | 78 | H78H | caC | caT | 47 | 47 | B.1.36.17 | 0.023221 |
ORF3a | 78 | H78Y | Cac | Tac | 47 | 47 | C.37 | 0.005455 |
ORF3a | 78 | H78Y | Cac | Tac | 45 | 45 | B.1.1.222 | 0.00918 |
ORF3a | 78 | H78Y | Cac | Tac | 45 | 45 | B.1.427 | 0.002272 |
ORF3a | 78 | H78R | cAc | cGc | 45 | 45 | B.1.617.2 | 0.000169 |
ORF3a | 78 | H78H | caC | caT | 44 | 44 | AY.26 | 0.001246 |
ORF3a | 78 | H78Q | caC | caA | 30 | 44 | B.1.1.7 | 0.000027 |
ORF3a | 78 | H78Q | caC | caG | 14 | 44 | B.1.1.7 | 0.000013 |
ORF3a | 78 | H78Y | Cac | Tac | 43 | 43 | AY.39 | 0.001063 |
ORF3a | 78 | H78Y | Cac | Tac | 43 | 43 | B.1.1.368 | 0.132716 |
ORF3a | 78 | H78Y | Cac | Tac | 43 | 43 | Q.4 | 0.019554 |
ORF3a | 78 | H78Y | Cac | Tac | 38 | 38 | B.1.177.17 | 0.031199 |
ORF3a | 78 | H78H | caC | caT | 38 | 38 | B.1.637 | 0.002777 |
ORF3a | 78 | H78H | caC | caT | 37 | 37 | AY.33 | 0.002471 |
ORF3a | 78 | H78Y | Cac | Tac | 36 | 36 | B.1.1.1 | 0.011761 |
ORF3a | 78 | H78H | caC | caT | 36 | 36 | B.1.160 | 0.001123 |
ORF3a | 78 | H78Y | Cac | Tac | 36 | 36 | C.2 | 0.580645 |
ORF3a | 78 | H78Y | Cac | Tac | 35 | 35 | AY.20 | 0.00136 |
ORF3a | 78 | H78Y | Cac | Tac | 31 | 31 | AY.13 | 0.00499 |
ORF3a | 78 | H78Y | Cac | Tac | 31 | 31 | B.1.1.311 | 0.011103 |
ORF3a | 78 | H78L | cAc | cTc | 30 | 30 | AY.120 | 0.001115 |
ORF3a | 78 | H78H | caC | caT | 30 | 30 | B.1.466.2 | 0.011737 |
ORF3a | 78 | H78H | caC | caT | 29 | 29 | AY.5 | 0.000599 |
ORF3a | 78 | H78H | caC | caT | 29 | 29 | B.1.1.519 | 0.001152 |
ORF3a | 78 | H78Q | caC | caA | 28 | 29 | B.1.617.2 | 0.000105 |
ORF3a | 78 | H78Q | caC | caG | 1 | 29 | B.1.617.2 | 0.000004 |
ORF3a | 78 | H78Y | Cac | Tac | 28 | 28 | AY.70 | 0.005838 |
ORF3a | 78 | H78Y | Cac | Tac | 27 | 27 | AK.1 | 0.341772 |
ORF3a | 78 | H78Y | Cac | Tac | 27 | 27 | AY.118 | 0.001692 |
ORF3a | 78 | H78Y | Cac | Tac | 27 | 27 | B.1.1.519 | 0.001072 |
ORF3a | 78 | H78H | caC | caT | 26 | 26 | B.1.351 | 0.000773 |
ORF3a | 78 | H78Y | Cac | Tac | 26 | 26 | C.36 | 0.023679 |
ORF3a | 78 | H78Y | Cac | Tac | 24 | 24 | AY.23 | 0.001674 |
ORF3a | 78 | H78Y | Cac | Tac | 24 | 24 | B.1.22 | 0.031621 |
ORF3a | 78 | H78H | caC | caT | 24 | 24 | B.1.621 | 0.002124 |
ORF3a | 78 | H78Y | Cac | Tac | 24 | 24 | R.1 | 0.00216 |
ORF3a | 78 | H78H | caC | caT | 23 | 23 | AY.39 | 0.000568 |
ORF3a | 78 | H78Y | Cac | Tac | 23 | 23 | B.1.1.345 | 1 |
ORF3a | 78 | H78Y | Cac | Tac | 22 | 22 | AY.4.3 | 0.018519 |
ORF3a | 78 | H78Y | Cac | Tac | 22 | 22 | C.8 | 0.098214 |
ORF3a | 78 | H78R | cAc | cGc | 21 | 21 | AY.42 | 0.000845 |
ORF3a | 78 | H78Y | Cac | Tac | 21 | 21 | AY.54 | 0.002002 |
ORF3a | 78 | H78Y | Cac | Tac | 21 | 21 | AY.84 | 0.009186 |
ORF3a | 78 | H78Y | Cac | Tac | 21 | 21 | B.1.621 | 0.001859 |
ORF3a | 78 | H78Y | Cac | Tac | 20 | 20 | AY.46 | 0.002082 |
ORF3a | 78 | H78Y | Cac | Tac | 20 | 20 | B.1.1.107 | 0.645161 |
ORF3a | 78 | H78Y | Cac | Tac | 20 | 20 | B.1.1.315 | 0.169492 |
ORF3a | 78 | H78Y | Cac | Tac | 20 | 20 | B.1.160 | 0.000624 |
ORF3a | 78 | H78H | caC | caT | 20 | 20 | P.4 | 0.076046 |
ORF3a | 78 | H78N | Cac | Aac | 19 | 19 | All | 0.000004 |
ORF3a | 78 | H78H | caC | caT | 19 | 19 | B.1.36.29 | 0.009829 |
ORF3a | 78 | H78H | caC | caT | 19 | 19 | B.1.427 | 0.000959 |
ORF3a | 78 | H78Y | Cac | Tac | 19 | 19 | Q.1 | 0.0024 |
ORF3a | 78 | H78H | caC | caT | 18 | 18 | AY.42 | 0.000724 |
ORF3a | 78 | H78Y | Cac | Tac | 18 | 18 | AY.96 | 0.037344 |
ORF3a | 78 | H78Y | Cac | Tac | 17 | 17 | AY.119 | 0.0006 |
ORF3a | 78 | H78H | caC | caT | 17 | 17 | AY.23 | 0.001186 |
ORF3a | 78 | H78Y | Cac | Tac | 17 | 17 | AY.30 | 0.006727 |
ORF3a | 78 | H78Q | caC | caA | 15 | 17 | AY.4 | 0.000023 |
ORF3a | 78 | H78Q | caC | caG | 2 | 17 | AY.4 | 0.000003 |
ORF3a | 78 | H78Y | Cac | Tac | 17 | 17 | AY.61 | 0.001781 |
ORF3a | 78 | H78Y | Cac | Tac | 17 | 17 | B.1.617.1 | 0.002192 |
ORF3a | 78 | H78Y | Cac | Tac | 16 | 16 | AY.92 | 0.004596 |
ORF3a | 78 | H78Y | Cac | Tac | 16 | 16 | B.1.258.17 | 0.001664 |
ORF3a | 78 | H78Y | Cac | Tac | 16 | 16 | D.2 | 0.001201 |
ORF3a | 78 | H78Y | Cac | Tac | 16 | 16 | P.1.14 | 0.000765 |
ORF3a | 78 | H78H | caC | caT | 15 | 15 | AY.20 | 0.000583 |
ORF3a | 78 | H78Y | Cac | Tac | 15 | 15 | AY.7 | 0.00294 |
ORF3a | 78 | H78Y | Cac | Tac | 15 | 15 | B.1.1.207 | 0.01773 |
ORF3a | 78 | H78Y | Cac | Tac | 15 | 15 | B.1.623 | 0.008047 |
ORF3a | 78 | H78H | caC | caT | 14 | 14 | AY.36 | 0.002075 |
ORF3a | 78 | H78del | CAC | --- | 14 | 14 | B.1.1.7 | 0.000013 |
ORF3a | 78 | H78Y | Cac | Tac | 13 | 13 | AY.110 | 0.001465 |
ORF3a | 78 | H78Y | Cac | Tac | 13 | 13 | AY.33 | 0.000868 |
ORF3a | 78 | H78H | caC | caT | 13 | 13 | P.1.14 | 0.000621 |
ORF3a | 78 | H78Y | Cac | Tac | 12 | 12 | AY.100 | 0.000552 |
ORF3a | 78 | H78H | caC | caT | 12 | 12 | AY.117 | 0.001014 |
ORF3a | 78 | H78Y | Cac | Tac | 12 | 12 | AY.75 | 0.000672 |
ORF3a | 78 | H78Y | Cac | Tac | 12 | 12 | B.1.1.15 | 0.162162 |
ORF3a | 78 | H78Y | Cac | Tac | 12 | 12 | B.1.1.284 | 0.001289 |
ORF3a | 78 | H78Y | Cac | Tac | 12 | 12 | B.1.1.50 | 0.008147 |
ORF3a | 78 | H78Y | Cac | Tac | 12 | 12 | B.1.177.21 | 0.000918 |
ORF3a | 78 | H78Y | Cac | Tac | 12 | 12 | B.1.177.60 | 0.002621 |
ORF3a | 78 | H78Y | Cac | Tac | 12 | 12 | B.1.206 | 0.009788 |
ORF3a | 78 | H78Y | Cac | Tac | 12 | 12 | B.1.575 | 0.003641 |
ORF3a | 78 | H78Y | Cac | Tac | 11 | 11 | AY.120.1 | 0.003531 |
ORF3a | 78 | H78Y | Cac | Tac | 11 | 11 | AY.4.1 | 0.008112 |
ORF3a | 78 | H78R | cAc | cGc | 11 | 11 | AY.94 | 0.004869 |
ORF3a | 78 | H78H | caC | caT | 11 | 11 | AY.99.2 | 0.001014 |
ORF3a | 78 | H78Y | Cac | Tac | 11 | 11 | B.1.1.204 | 0.033435 |
ORF3a | 78 | H78H | caC | caT | 11 | 11 | B.1.258 | 0.000732 |
ORF3a | 78 | H78H | caC | caT | 11 | 11 | B.1.560 | 0.050926 |
ORF3a | 78 | H78H | caC | caT | 11 | 11 | B.1.596 | 0.000959 |
ORF3a | 78 | H78Y | Cac | Tac | 11 | 11 | P.1.15 | 0.002556 |
ORF3a | 78 | H78R | cAc | cGc | 10 | 10 | AY.100 | 0.00046 |
ORF3a | 78 | H78Y | Cac | Tac | 10 | 10 | AY.46.6 | 0.000722 |
ORF3a | 78 | H78Y | Cac | Tac | 10 | 10 | AY.9 | 0.000676 |
ORF3a | 78 | H78H | caC | caT | 10 | 10 | AY.9.2 | 0.000367 |
ORF3a | 78 | H78Y | Cac | Tac | 10 | 10 | B.1.1.139 | 0.227273 |
ORF3a | 78 | H78Y | Cac | Tac | 10 | 10 | B.1.1.216 | 0.008905 |
ORF3a | 78 | H78H | caC | caT | 10 | 10 | B.1.1.434 | 0.003486 |
ORF3a | 78 | H78H | caC | caT | 10 | 10 | B.1.258.17 | 0.00104 |
ORF3a | 78 | H78Y | Cac | Tac | 10 | 10 | B.1.311 | 0.002746 |
ORF3a | 78 | H78Y | Cac | Tac | 10 | 10 | B.1.36 | 0.001459 |
ORF3a | 78 | H78H | caC | caT | 10 | 10 | D.2 | 0.00075 |
ORF3a | 78 | H78Y | Cac | Tac | 10 | 10 | Q.8 | 0.001649 |
ORF3a | 78 | H78Y | Cac | Tac | 9 | 9 | AY.79 | 0.010896 |
ORF3a | 78 | H78H | caC | caT | 9 | 9 | B.1.1.280 | 0.027778 |
ORF3a | 78 | H78Y | Cac | Tac | 9 | 9 | B.1.222 | 0.015228 |
ORF3a | 78 | H78Y | Cac | Tac | 9 | 9 | B.1.591 | 0.095745 |
ORF3a | 78 | H78L | cAc | cTc | 9 | 9 | B.1.617.2 | 0.000034 |
ORF3a | 78 | H78H | caC | caT | 9 | 9 | P.1.15 | 0.002091 |
ORF3a | 78 | H78H | caC | caT | 8 | 8 | AY.98.1 | 0.000387 |
ORF3a | 78 | H78R | cAc | cGc | 8 | 8 | B.1.1 | 0.000145 |
ORF3a | 78 | H78H | caC | caT | 8 | 8 | B.1.1.317 | 0.003294 |
ORF3a | 78 | H78Y | Cac | Tac | 8 | 8 | B.1.1.63 | 0.003086 |
ORF3a | 78 | H78Y | Cac | Tac | 8 | 8 | B.1.234 | 0.001056 |
ORF3a | 78 | H78Y | Cac | Tac | 8 | 8 | B.1.36.29 | 0.004139 |
ORF3a | 78 | H78H | caC | caT | 8 | 8 | B.1.369 | 0.002282 |
ORF3a | 78 | H78H | caC | caT | 8 | 8 | B.1.524 | 0.011252 |
ORF3a | 78 | H78Y | Cac | Tac | 8 | 8 | P.2 | 0.001493 |
ORF3a | 78 | H78R | cAc | cGc | 7 | 7 | AH.3 | 0.026616 |
ORF3a | 78 | H78P | cAc | cCc | 4 | 7 | All | 0.000001 |
ORF3a | 78 | H78P | cAC | cCT | 3 | 7 | All | 0.000001 |
ORF3a | 78 | H78H | caC | caT | 7 | 7 | AY.116 | 0.002007 |
ORF3a | 78 | H78H | caC | caT | 7 | 7 | AY.119 | 0.000247 |
ORF3a | 78 | H78Y | Cac | Tac | 7 | 7 | AY.12 | 0.002212 |
ORF3a | 78 | H78H | caC | caT | 7 | 7 | AY.29 | 0.00011 |
ORF3a | 78 | H78Y | Cac | Tac | 7 | 7 | AY.39.1 | 0.000277 |
ORF3a | 78 | H78D | Cac | Gac | 7 | 7 | AY.43 | 0.000031 |
ORF3a | 78 | H78H | caC | caT | 7 | 7 | AY.46.6 | 0.000505 |
ORF3a | 78 | H78Y | Cac | Tac | 7 | 7 | AY.6 | 0.000288 |
ORF3a | 78 | H78H | caC | caT | 7 | 7 | AY.9 | 0.000473 |
ORF3a | 78 | H78H | caC | caT | 7 | 7 | AY.92 | 0.002011 |
ORF3a | 78 | H78Y | Cac | Tac | 7 | 7 | B.1.1.303 | 0.019337 |
ORF3a | 78 | H78H | caC | caT | 7 | 7 | B.1.221 | 0.000497 |
ORF3a | 78 | H78H | caC | caT | 7 | 7 | B.1.36 | 0.001021 |
ORF3a | 78 | H78R | cAc | cGc | 7 | 7 | B.1.429 | 0.000165 |
ORF3a | 78 | H78Y | Cac | Tac | 7 | 7 | B.1.595 | 0.001827 |
ORF3a | 78 | H78Y | Cac | Tac | 7 | 7 | B.1.596 | 0.00061 |
ORF3a | 78 | H78Y | Cac | Tac | 6 | 6 | AY.117 | 0.000507 |
ORF3a | 78 | H78H | caC | caT | 6 | 6 | AY.118 | 0.000376 |
ORF3a | 78 | H78H | caC | caT | 6 | 6 | AY.3.1 | 0.000512 |
ORF3a | 78 | H78Y | Cac | Tac | 6 | 6 | AY.42 | 0.000241 |
ORF3a | 78 | H78Y | Cac | Tac | 6 | 6 | AY.45 | 0.00073 |
ORF3a | 78 | H78H | caC | caT | 6 | 6 | AY.46 | 0.000624 |
ORF3a | 78 | H78H | caC | caT | 6 | 6 | AY.6 | 0.000247 |
ORF3a | 78 | H78Y | Cac | Tac | 6 | 6 | AY.9.1 | 0.000502 |
ORF3a | 78 | H78Y | Cac | Tac | 6 | 6 | AY.97 | 0.010204 |
ORF3a | 78 | H78H | caC | caT | 6 | 6 | B.1.1.297 | 0.013423 |
ORF3a | 78 | H78H | caC | caT | 6 | 6 | B.1.1.37 | 0.001157 |
ORF3a | 78 | H78H | caC | caT | 6 | 6 | B.1.177.21 | 0.000459 |
ORF3a | 78 | H78Q | caC | caA | 6 | 6 | B.1.428.2 | 0.2 |
ORF3a | 78 | H78H | caC | caT | 6 | 6 | L.4 | 0.3 |
ORF3a | 78 | H78H | caC | caT | 6 | 6 | P.1.7 | 0.001916 |
ORF3a | 78 | H78Y | Cac | Tac | 5 | 5 | AY.109 | 0.003698 |
ORF3a | 78 | H78H | caC | caT | 5 | 5 | AY.121 | 0.000677 |
ORF3a | 78 | H78Y | Cac | Tac | 5 | 5 | AY.34 | 0.000485 |
ORF3a | 78 | H78Y | Cac | Tac | 5 | 5 | AY.38 | 0.002496 |
ORF3a | 78 | H78H | caC | caT | 5 | 5 | AY.45 | 0.000608 |
ORF3a | 78 | H78Y | Cac | Tac | 5 | 5 | AY.46.1 | 0.005133 |
ORF3a | 78 | H78Y | Cac | Tac | 5 | 5 | AY.46.4 | 0.000823 |
ORF3a | 78 | H78Y | Cac | Tac | 5 | 5 | AY.59 | 0.002648 |
ORF3a | 78 | H78D | Cac | Gac | 5 | 5 | AY.70 | 0.001043 |
ORF3a | 78 | H78H | caC | caT | 5 | 5 | AY.75.1 | 0.000902 |
ORF3a | 78 | H78H | caC | caT | 5 | 5 | AY.86 | 0.004149 |
ORF3a | 78 | H78Y | Cac | Tac | 5 | 5 | B | 0.000639 |
ORF3a | 78 | H78R | cAc | cGc | 5 | 5 | B.1 | 0.000046 |
ORF3a | 78 | H78Y | Cac | Tac | 5 | 5 | B.1.1.192 | 0.011547 |
ORF3a | 78 | H78H | caC | caT | 5 | 5 | B.1.1.214 | 0.000277 |
ORF3a | 78 | H78Y | Cac | Tac | 5 | 5 | B.1.1.318 | 0.001509 |
ORF3a | 78 | H78Y | Cac | Tac | 5 | 5 | B.1.1.432 | 0.006329 |
ORF3a | 78 | H78Y | Cac | Tac | 5 | 5 | B.1.160.13 | 0.138889 |
ORF3a | 78 | H78del | CAC | --- | 5 | 5 | B.1.177 | 0.000066 |
ORF3a | 78 | H78H | caC | caT | 5 | 5 | B.1.177.10 | 0.00439 |
ORF3a | 78 | H78Y | Cac | Tac | 5 | 5 | B.1.177.55 | 0.011655 |
ORF3a | 78 | H78D | Cac | Gac | 5 | 5 | B.1.177.7 | 0.000824 |
ORF3a | 78 | H78H | caC | caT | 5 | 5 | B.1.243 | 0.000348 |
ORF3a | 78 | H78Y | Cac | Tac | 5 | 5 | B.1.396 | 0.003529 |
ORF3a | 78 | H78Y | Cac | Tac | 5 | 5 | B.1.466.2 | 0.001956 |
ORF3a | 78 | H78H | caC | caT | 5 | 5 | B.1.470 | 0.007022 |
ORF3a | 78 | H78H | caC | caT | 5 | 5 | B.1.526 | 0.000118 |
ORF3a | 78 | H78Q | caC | caA | 5 | 5 | B.1.577 | 0.003436 |
ORF3a | 78 | H78Y | Cac | Tac | 5 | 5 | B.1.628 | 0.001762 |
ORF3a | 78 | H78Y | Cac | Tac | 5 | 5 | B.1.637 | 0.000365 |
ORF3a | 78 | H78Y | Cac | Tac | 5 | 5 | B.1.84 | 0.104167 |
ORF3a | 78 | H78P | cAC | cCT | 2 | 4 | 0.111111 | |
ORF3a | 78 | H78P | cAc | cCc | 2 | 4 | 0.111111 | |
ORF3a | 78 | H78Y | Cac | Tac | 4 | 4 | A.2.5 | 0.001996 |
ORF3a | 78 | H78del1 | caC | ca- | 2 | 4 | All | 0 |
ORF3a | 78 | H78del1 | Cac | -ac | 2 | 4 | All | 0 |
ORF3a | 78 | H78R | cAc | cGc | 4 | 4 | AY.102 | 0.000106 |
ORF3a | 78 | H78Y | Cac | Tac | 4 | 4 | AY.16.1 | 0.00188 |
ORF3a | 78 | H78R | cAc | cGc | 4 | 4 | AY.23 | 0.000279 |
ORF3a | 78 | H78Q | caC | caA | 3 | 4 | AY.34 | 0.000291 |
ORF3a | 78 | H78Q | caC | caG | 1 | 4 | AY.34 | 0.000097 |
ORF3a | 78 | H78Y | Cac | Tac | 4 | 4 | AY.35 | 0.000932 |
ORF3a | 78 | H78H | caC | caT | 4 | 4 | AY.4.5 | 0.00043 |
ORF3a | 78 | H78Q | caC | caA | 4 | 4 | AY.46 | 0.000416 |
ORF3a | 78 | H78Y | Cac | Tac | 4 | 4 | AY.46.3 | 0.003735 |
ORF3a | 78 | H78H | caC | caT | 4 | 4 | AY.46.5 | 0.000794 |
ORF3a | 78 | H78H | caC | caT | 4 | 4 | AY.5.4 | 0.001107 |
ORF3a | 78 | H78Y | Cac | Tac | 4 | 4 | AY.75.1 | 0.000721 |
ORF3a | 78 | H78H | caC | caT | 4 | 4 | AY.9.1 | 0.000335 |
ORF3a | 78 | H78Y | Cac | Tac | 4 | 4 | AY.93 | 0.001092 |
ORF3a | 78 | H78Y | Cac | Tac | 4 | 4 | AZ.2 | 0.003284 |
ORF3a | 78 | H78H | caC | caT | 4 | 4 | B.1.1.192 | 0.009238 |
ORF3a | 78 | H78Y | Cac | Tac | 4 | 4 | B.1.1.214 | 0.000222 |
ORF3a | 78 | H78H | caC | caT | 4 | 4 | B.1.1.222 | 0.000816 |
ORF3a | 78 | H78Y | Cac | Tac | 4 | 4 | B.1.1.25 | 0.002274 |
ORF3a | 78 | H78Y | Cac | Tac | 4 | 4 | B.1.1.306 | 0.001754 |
ORF3a | 78 | H78H | caC | caT | 4 | 4 | B.1.1.396 | 0.181818 |
ORF3a | 78 | H78R | cAc | cGc | 4 | 4 | B.1.1.7 | 0.000004 |
ORF3a | 78 | H78R | cAc | cGc | 4 | 4 | B.1.160 | 0.000125 |
ORF3a | 78 | H78Y | Cac | Tac | 4 | 4 | B.1.177.7 | 0.000659 |
ORF3a | 78 | H78R | cAc | cGc | 4 | 4 | B.1.177.77 | 0.002905 |
ORF3a | 78 | H78N | Cac | Aac | 4 | 4 | B.1.2 | 0.000035 |
ORF3a | 78 | H78Q | caC | caA | 4 | 4 | B.1.2 | 0.000035 |
ORF3a | 78 | H78H | caC | caT | 4 | 4 | B.1.234 | 0.000528 |
ORF3a | 78 | H78H | caC | caT | 4 | 4 | B.1.391 | 0.00451 |
ORF3a | 78 | H78D | Cac | Gac | 4 | 4 | B.1.429 | 0.000094 |
ORF3a | 78 | H78Y | Cac | Tac | 4 | 4 | C.33 | 0.235294 |
ORF3a | 78 | H78H | caC | caT | 4 | 4 | P.1.17 | 0.000647 |
ORF3a | 78 | H78Y | Cac | Tac | 3 | 3 | AE.8 | 0.001467 |
ORF3a | 78 | H78del2 | cAC | c-- | 2 | 3 | All | 0 |
ORF3a | 78 | H78del2 | CAc | --c | 1 | 3 | All | 0 |
ORF3a | 78 | H78Q | caC | caA | 3 | 3 | AY.103 | 0.000019 |
ORF3a | 78 | H78Y | Cac | Tac | 3 | 3 | AY.106 | 0.001005 |
ORF3a | 78 | H78Y | Cac | Tac | 3 | 3 | AY.111 | 0.000549 |
ORF3a | 78 | H78H | caC | caT | 3 | 3 | AY.111 | 0.000549 |
ORF3a | 78 | H78Y | Cac | Tac | 3 | 3 | AY.113 | 0.000427 |
ORF3a | 78 | H78H | caC | caT | 3 | 3 | AY.120 | 0.000112 |
ORF3a | 78 | H78Q | caC | caA | 3 | 3 | AY.20 | 0.000117 |
ORF3a | 78 | H78Y | Cac | Tac | 3 | 3 | AY.21 | 0.005693 |
ORF3a | 78 | H78R | cAc | cGc | 3 | 3 | AY.25 | 0.000018 |
ORF3a | 78 | H78H | caC | caT | 3 | 3 | AY.27 | 0.000194 |
ORF3a | 78 | H78H | caC | caT | 3 | 3 | AY.30 | 0.001187 |
ORF3a | 78 | H78Y | Cac | Tac | 3 | 3 | AY.32 | 0.001597 |
ORF3a | 78 | H78H | caC | caT | 3 | 3 | AY.38 | 0.001498 |
ORF3a | 78 | H78H | caC | caT | 3 | 3 | AY.39.1 | 0.000119 |
ORF3a | 78 | H78R | cAc | cGc | 3 | 3 | AY.4 | 0.000005 |
ORF3a | 78 | H78Y | Cac | Tac | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF3a | 78 | H78H | caC | caT | 3 | 3 | AY.4.4 | 0.001227 |
ORF3a | 78 | H78R | cAc | cGc | 3 | 3 | AY.43 | 0.000013 |
ORF3a | 78 | H78H | caC | caT | 3 | 3 | AY.46.2 | 0.001906 |
ORF3a | 78 | H78H | caC | caT | 3 | 3 | AY.54 | 0.000286 |
ORF3a | 78 | H78Y | Cac | Tac | 3 | 3 | AY.62 | 0.001307 |
ORF3a | 78 | H78H | caC | caT | 3 | 3 | AY.65 | 0.001599 |
ORF3a | 78 | H78Y | Cac | Tac | 3 | 3 | AY.67 | 0.001393 |
ORF3a | 78 | H78Y | Cac | Tac | 3 | 3 | AY.68 | 0.000821 |
ORF3a | 78 | H78H | caC | caT | 3 | 3 | AY.78 | 0.004622 |
ORF3a | 78 | H78Y | Cac | Tac | 3 | 3 | AY.99.2 | 0.000276 |
ORF3a | 78 | H78H | caC | caT | 3 | 3 | B | 0.000383 |
ORF3a | 78 | H78N | Cac | Aac | 3 | 3 | B.1 | 0.000027 |
ORF3a | 78 | H78Q | caC | caG | 3 | 3 | B.1 | 0.000027 |
ORF3a | 78 | H78H | caC | caT | 3 | 3 | B.1.1.203 | 0.050847 |
ORF3a | 78 | H78H | caC | caT | 3 | 3 | B.1.1.216 | 0.002671 |
ORF3a | 78 | H78H | caC | caT | 3 | 3 | B.1.1.274 | 0.015152 |
ORF3a | 78 | H78Y | Cac | Tac | 3 | 3 | B.1.1.280 | 0.009259 |
ORF3a | 78 | H78Y | Cac | Tac | 3 | 3 | B.1.1.316 | 0.002775 |
ORF3a | 78 | H78H | caC | caT | 3 | 3 | B.1.1.318 | 0.000905 |
ORF3a | 78 | H78Y | Cac | Tac | 3 | 3 | B.1.1.369 | 0.001339 |
ORF3a | 78 | H78H | caC | caT | 3 | 3 | B.1.1.433 | 0.004274 |
ORF3a | 78 | H78Y | Cac | Tac | 3 | 3 | B.1.1.464 | 0.004418 |
ORF3a | 78 | H78Y | Cac | Tac | 3 | 3 | B.1.111 | 0.003525 |
ORF3a | 78 | H78R | cAc | cGc | 3 | 3 | B.1.177 | 0.00004 |
ORF3a | 78 | H78Y | Cac | Tac | 3 | 3 | B.1.177.10 | 0.002634 |
ORF3a | 78 | H78H | caC | caT | 3 | 3 | B.1.177.56 | 0.002003 |
ORF3a | 78 | H78R | cAc | cGc | 3 | 3 | B.1.177.60 | 0.000655 |
ORF3a | 78 | H78H | caC | caT | 3 | 3 | B.1.177.7 | 0.000495 |
ORF3a | 78 | H78H | caC | caT | 3 | 3 | B.1.177.79 | 0.007026 |
ORF3a | 78 | H78H | caC | caT | 3 | 3 | B.1.177.86 | 0.00055 |
ORF3a | 78 | H78Y | Cac | Tac | 3 | 3 | B.1.232 | 0.001612 |
ORF3a | 78 | H78Y | Cac | Tac | 3 | 3 | B.1.240 | 0.000647 |
ORF3a | 78 | H78Y | Cac | Tac | 3 | 3 | B.1.258.2 | 0.013514 |
ORF3a | 78 | H78Q | caC | caA | 3 | 3 | B.1.36.31 | 0.005254 |
ORF3a | 78 | H78Y | Cac | Tac | 3 | 3 | B.1.361 | 0.003866 |
ORF3a | 78 | H78Y | Cac | Tac | 3 | 3 | B.1.369 | 0.000856 |
ORF3a | 78 | H78Y | Cac | Tac | 3 | 3 | B.1.389 | 0.003006 |
ORF3a | 78 | H78N | Cac | Aac | 3 | 3 | B.1.400 | 0.001287 |
ORF3a | 78 | H78H | caC | caT | 3 | 3 | B.1.400 | 0.001287 |
ORF3a | 78 | H78Y | Cac | Tac | 3 | 3 | B.1.409 | 0.002344 |
ORF3a | 78 | H78Q | caC | caA | 3 | 3 | B.1.438.1 | 0.000322 |
ORF3a | 78 | H78D | Cac | Gac | 3 | 3 | B.1.517 | 0.001281 |
ORF3a | 78 | H78H | caC | caT | 3 | 3 | B.1.595 | 0.000783 |
ORF3a | 78 | H78Y | Cac | Tac | 3 | 3 | B.1.609 | 0.001438 |
ORF3a | 78 | H78del | CAC | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF3a | 78 | H78Y | Cac | Tac | 3 | 3 | C.16 | 0.003181 |
ORF3a | 78 | H78Y | Cac | Tac | 3 | 3 | C.26 | 0.022059 |
ORF3a | 78 | H78Y | Cac | Tac | 3 | 3 | C.36.3 | 0.001702 |
ORF3a | 78 | H78H | caC | caT | 3 | 3 | C.37 | 0.000348 |
ORF3a | 78 | H78H | caC | caT | 3 | 3 | P.1.12 | 0.001452 |
ORF3a | 78 | H78H | caC | caT | 3 | 3 | Q.8 | 0.000495 |
ORF3a | 78 | H78del | CAC | --- | 3 | 3 | U.3 | 0.011583 |
ORF3a | 78 | H78H | caC | caT | 2 | 2 | 0.111111 | |
ORF3a | 78 | H78H | caC | caT | 2 | 2 | A.1 | 0.000564 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | A.2 | 0.001324 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | AD.2 | 0.000438 |
ORF3a | 78 | H78H | caC | caT | 2 | 2 | AD.2 | 0.000438 |
ORF3a | 78 | H78S | CAc | TCc | 2 | 2 | All | 0 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | AU.1 | 0.002532 |
ORF3a | 78 | H78H | caC | caT | 2 | 2 | AY.100 | 0.000092 |
ORF3a | 78 | H78L | cAc | cTc | 2 | 2 | AY.102 | 0.000053 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | AY.105 | 0.001286 |
ORF3a | 78 | H78H | caC | caT | 2 | 2 | AY.106 | 0.00067 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | AY.107 | 0.000932 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | AY.108 | 0.002205 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | AY.120.2 | 0.002571 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | AY.16 | 0.000759 |
ORF3a | 78 | H78del | CAC | --- | 2 | 2 | AY.23 | 0.000139 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | AY.23.1 | 0.000835 |
ORF3a | 78 | H78H | caC | caT | 2 | 2 | AY.24 | 0.000862 |
ORF3a | 78 | H78D | Cac | Gac | 2 | 2 | AY.25 | 0.000012 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | AY.3.1 | 0.000171 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | AY.37 | 0.000632 |
ORF3a | 78 | H78L | cAc | cTc | 2 | 2 | AY.4 | 0.000003 |
ORF3a | 78 | H78del | CAC | --- | 2 | 2 | AY.4 | 0.000003 |
ORF3a | 78 | H78del | CAC | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF3a | 78 | H78H | caC | caT | 2 | 2 | AY.40 | 0.001929 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | AY.41 | 0.000588 |
ORF3a | 78 | H78del | CAC | --- | 2 | 2 | AY.43 | 0.000009 |
ORF3a | 78 | H78Q | caC | caA | 2 | 2 | AY.43 | 0.000009 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | AY.48 | 0.00093 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | AY.5.3 | 0.000675 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | AY.57 | 0.001312 |
ORF3a | 78 | H78H | caC | caT | 2 | 2 | AY.59 | 0.001059 |
ORF3a | 78 | H78H | caC | caT | 2 | 2 | AY.62 | 0.000871 |
ORF3a | 78 | H78H | caC | caT | 2 | 2 | AY.68 | 0.000547 |
ORF3a | 78 | H78H | caC | caT | 2 | 2 | AY.79 | 0.002421 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | AY.85 | 0.000854 |
ORF3a | 78 | H78H | caC | caT | 2 | 2 | AY.93 | 0.000546 |
ORF3a | 78 | H78del | CAC | --- | 2 | 2 | B.1 | 0.000018 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | B.1.1.10 | 0.00223 |
ORF3a | 78 | H78H | caC | caT | 2 | 2 | B.1.1.170 | 0.002494 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | B.1.1.198 | 0.002937 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | B.1.1.229 | 0.011494 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | B.1.1.231 | 0.006192 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | B.1.1.258 | 0.006515 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | B.1.1.263 | 0.003115 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | B.1.1.294 | 0.002532 |
ORF3a | 78 | H78H | caC | caT | 2 | 2 | B.1.1.306 | 0.000877 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | B.1.1.33 | 0.000842 |
ORF3a | 78 | H78H | caC | caT | 2 | 2 | B.1.1.33 | 0.000842 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | B.1.1.348 | 0.001592 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | B.1.1.37 | 0.000386 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | B.1.1.375 | 0.02381 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | B.1.1.391 | 0.017094 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | B.1.1.407 | 0.083333 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | B.1.1.434 | 0.000697 |
ORF3a | 78 | H78H | caC | caT | 2 | 2 | B.1.1.456 | 0.111111 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | B.1.1.53 | 0.027397 |
ORF3a | 78 | H78S | CAc | TCc | 2 | 2 | B.1.1.7 | 0.000002 |
ORF3a | 78 | H78del2 | CAc | --c | 1 | 2 | B.1.1.7 | 0.000001 |
ORF3a | 78 | H78L | cAc | cTc | 1 | 2 | B.1.1.7 | 0.000001 |
ORF3a | 78 | H78del2 | cAC | c-- | 1 | 2 | B.1.1.7 | 0.000001 |
ORF3a | 78 | H78L | cAC | cTT | 1 | 2 | B.1.1.7 | 0.000001 |
ORF3a | 78 | H78H | caC | caT | 2 | 2 | B.1.128 | 0.001271 |
ORF3a | 78 | H78H | caC | caT | 2 | 2 | B.1.177.33 | 0.003289 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | B.1.177.44 | 0.001038 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | B.1.177.73 | 0.001133 |
ORF3a | 78 | H78H | caC | caT | 2 | 2 | B.1.177.73 | 0.001133 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | B.1.177.82 | 0.000955 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | B.1.177.86 | 0.000367 |
ORF3a | 78 | H78R | cAc | cGc | 2 | 2 | B.1.2 | 0.000018 |
ORF3a | 78 | H78H | caC | caT | 2 | 2 | B.1.239 | 0.002442 |
ORF3a | 78 | H78H | caC | caT | 2 | 2 | B.1.241 | 0.001623 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | B.1.258.11 | 0.000793 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | B.1.258.3 | 0.00335 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | B.1.258.7 | 0.003824 |
ORF3a | 78 | H78H | caC | caT | 2 | 2 | B.1.281 | 0.043478 |
ORF3a | 78 | H78H | caC | caT | 2 | 2 | B.1.311 | 0.000549 |
ORF3a | 78 | H78H | caC | caT | 2 | 2 | B.1.336 | 0.004878 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | B.1.36.16 | 0.002849 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | B.1.36.22 | 0.002415 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | B.1.36.38 | 0.003284 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | B.1.399 | 0.003868 |
ORF3a | 78 | H78N | Cac | Aac | 2 | 2 | B.1.427 | 0.000101 |
ORF3a | 78 | H78H | caC | caT | 2 | 2 | B.1.445 | 0.023529 |
ORF3a | 78 | H78H | caC | caT | 2 | 2 | B.1.497 | 0.00063 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | B.1.497 | 0.00063 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | B.1.499 | 0.002101 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | B.1.526 | 0.000047 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | B.1.556 | 0.015038 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | B.1.565 | 0.001621 |
ORF3a | 78 | H78H | caC | caT | 2 | 2 | B.1.575 | 0.000607 |
ORF3a | 78 | H78H | caC | caT | 2 | 2 | B.1.575.1 | 0.004878 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | B.1.577 | 0.001375 |
ORF3a | 78 | H78H | caC | caT | 2 | 2 | B.1.577 | 0.001375 |
ORF3a | 78 | H78D | Cac | Gac | 2 | 2 | B.1.596 | 0.000174 |
ORF3a | 78 | H78H | caC | caT | 2 | 2 | B.1.619 | 0.001742 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | B.1.627 | 0.00404 |
ORF3a | 78 | H78H | caC | caT | 2 | 2 | B.1.631 | 0.006734 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | B.1.93 | 0.001867 |
ORF3a | 78 | H78H | caC | caT | 2 | 2 | B.40 | 0.000729 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | C.35 | 0.001548 |
ORF3a | 78 | H78H | caC | caT | 2 | 2 | C.37.1 | 0.005236 |
ORF3a | 78 | H78Y | Cac | Tac | 2 | 2 | C.38 | 0.016129 |
ORF3a | 78 | H78R | cAc | cGc | 2 | 2 | P.1 | 0.000032 |
ORF3a | 78 | H78Y | CaC | TaT | 2 | 2 | Q.2 | 0.001227 |
ORF3a | 78 | H78H | caC | caT | 2 | 2 | W.4 | 0.002703 |
ORF3a | 78 | H78Q | caC | caA | 1 | 1 | 0.055556 | |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | A | 0.000387 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | A | 0.000387 |
ORF3a | 78 | H78N | Cac | Aac | 1 | 1 | A.2.5 | 0.000499 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | A.2.5.2 | 0.001572 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | AA.4 | 0.009091 |
ORF3a | 78 | H78L | cAc | cTc | 1 | 1 | AD.2 | 0.000219 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AE.7 | 0.083333 |
ORF3a | 78 | H78del | CAC | --- | 1 | 1 | AH.3 | 0.003802 |
ORF3a | 78 | H78R | cAc | cGc | 1 | 1 | AL.1 | 0.012987 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | AM.4 | 0.003571 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AY.1 | 0.000396 |
ORF3a | 78 | H78R | cAc | cGc | 1 | 1 | AY.1 | 0.000396 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | AY.10 | 0.00053 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AY.101 | 0.00049 |
ORF3a | 78 | H78L | cAc | cTc | 1 | 1 | AY.103 | 0.000006 |
ORF3a | 78 | H78D | Cac | Gac | 1 | 1 | AY.103 | 0.000006 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | AY.104 | 0.001984 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AY.104 | 0.001984 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AY.108 | 0.001103 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AY.11 | 0.001339 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | AY.11 | 0.001339 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AY.110 | 0.000113 |
ORF3a | 78 | H78del | CAC | --- | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | AY.114 | 0.000231 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AY.12 | 0.000316 |
ORF3a | 78 | H78Q | caC | caA | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AY.13 | 0.000161 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AY.14 | 0.000088 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AY.16 | 0.00038 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AY.16.1 | 0.00047 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | AY.2 | 0.000356 |
ORF3a | 78 | H78D | Cac | Gac | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AY.21 | 0.001898 |
ORF3a | 78 | H78L | cAc | cTc | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 78 | H78Q | caC | caA | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 78 | H78del | CAC | --- | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 78 | H78R | cAc | cGc | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | AY.27 | 0.000065 |
ORF3a | 78 | H78del2 | cAC | c-- | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AY.29.1 | 0.000221 |
ORF3a | 78 | H78N | Cac | Aac | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 78 | H78Q | caC | caG | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AY.32 | 0.000532 |
ORF3a | 78 | H78del | CAC | --- | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AY.34 | 0.000097 |
ORF3a | 78 | H78del | CAC | --- | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AY.39.1.1 | 0.000725 |
ORF3a | 78 | H78D | Cac | Gac | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | AY.4.4 | 0.000409 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 78 | H78L | cAc | cTc | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 78 | H78D | Cac | Gac | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 78 | H78R | cAc | cGc | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 78 | H78N | Cac | Aac | 1 | 1 | AY.45 | 0.000122 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | AY.46.2 | 0.000635 |
ORF3a | 78 | H78D | Cac | Gac | 1 | 1 | AY.46.2 | 0.000635 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AY.46.3 | 0.000934 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AY.48 | 0.000465 |
ORF3a | 78 | H78Q | caC | caA | 1 | 1 | AY.5 | 0.000021 |
ORF3a | 78 | H78D | Cac | Gac | 1 | 1 | AY.5 | 0.000021 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AY.5.3 | 0.000337 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | AY.5.4 | 0.000277 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AY.51 | 0.000909 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | AY.53 | 0.000288 |
ORF3a | 78 | H78R | cAc | cGc | 1 | 1 | AY.54 | 0.000095 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | AY.55 | 0.000917 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AY.55 | 0.000917 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 78 | H78Q | caC | caA | 1 | 1 | AY.62 | 0.000436 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AY.69 | 0.000187 |
ORF3a | 78 | H78D | Cac | Gac | 1 | 1 | AY.7 | 0.000196 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | AY.7.1 | 0.000113 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | AY.71 | 0.000475 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AY.71 | 0.000475 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AY.72 | 0.001361 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | AY.74 | 0.000116 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AY.74 | 0.000116 |
ORF3a | 78 | H78N | Cac | Aac | 1 | 1 | AY.75 | 0.000056 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | AY.76 | 0.004831 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AY.77 | 0.001127 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | AY.8 | 0.000606 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | AY.81 | 0.001992 |
ORF3a | 78 | H78del1 | Cac | -ac | 1 | 1 | AY.82 | 0.001357 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AY.84 | 0.000437 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | AY.87 | 0.000833 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AY.88 | 0.000884 |
ORF3a | 78 | H78Q | caC | caA | 1 | 1 | AY.9 | 0.000068 |
ORF3a | 78 | H78R | cAc | cGc | 1 | 1 | AY.95 | 0.000761 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AY.98 | 0.000079 |
ORF3a | 78 | H78D | Cac | Gac | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AY.99 | 0.001049 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | AY.99 | 0.001049 |
ORF3a | 78 | H78R | cAc | cGc | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AZ.1 | 0.000867 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | AZ.3 | 0.00152 |
ORF3a | 78 | H78R | cAc | cGc | 1 | 1 | B | 0.000128 |
ORF3a | 78 | H78Q | caC | caA | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 78 | H78D | Cac | Gac | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.1.101 | 0.01 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.1.12 | 0.007463 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.1.121 | 0.002427 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.1.141 | 0.002012 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.1.157 | 0.000913 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.1.158 | 0.012195 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.1.161 | 0.003534 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.1.161 | 0.003534 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.1.174 | 0.003378 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.1.200 | 0.007463 |
ORF3a | 78 | H78N | Cac | Aac | 1 | 1 | B.1.1.202 | 0.076923 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.1.220 | 0.001859 |
ORF3a | 78 | H78Y | CaC | TaT | 1 | 1 | B.1.1.221 | 0.010101 |
ORF3a | 78 | H78N | Cac | Aac | 1 | 1 | B.1.1.222 | 0.000204 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.1.227 | 0.004348 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.1.229 | 0.005747 |
ORF3a | 78 | H78del | CAC | --- | 1 | 1 | B.1.1.236 | 0.006897 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.1.265 | 0.003155 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.1.269 | 0.001353 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.1.275 | 0.011236 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.1.279 | 0.001121 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.1.279 | 0.001121 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.1.290 | 0.018182 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.1.301 | 0.001179 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.1.302 | 0.002075 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.1.312 | 0.001912 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.1.317 | 0.000412 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.1.322 | 0.008772 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.1.322 | 0.008772 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.1.335 | 0.012987 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.1.349 | 0.010309 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.1.357 | 0.125 |
ORF3a | 78 | H78Q | caC | caA | 1 | 1 | B.1.1.363 | 0.005988 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.1.371 | 0.010417 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.1.372 | 0.000689 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.1.378 | 0.007299 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.1.385 | 0.004464 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.1.388 | 0.045455 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.1.397 | 0.002252 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.1.398 | 0.003226 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.1.4 | 0.002976 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.1.406 | 0.006494 |
ORF3a | 78 | H78del | CAC | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.1.412 | 0.007634 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.1.416 | 0.000905 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.1.432 | 0.001266 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.1.433 | 0.001425 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.1.448 | 0.002033 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.1.449 | 0.022727 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.1.449 | 0.022727 |
ORF3a | 78 | H78D | Cac | Gac | 1 | 1 | B.1.1.452 | 0.111111 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.1.47 | 0.005348 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.1.51 | 0.001718 |
ORF3a | 78 | H78Q | caC | caA | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.1.526 | 0.003546 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.1.528 | 0.004808 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.1.59 | 0.006494 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF3a | 78 | H78P | cAc | cCc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 78 | H78del1 | Cac | -ac | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 78 | H78P | cAc | cCc | 1 | 1 | B.1.1.70 | 0.000341 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.1.70 | 0.000341 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.1.89 | 0.006061 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.110.3 | 0.000718 |
ORF3a | 78 | H78Q | caC | caG | 1 | 1 | B.1.111 | 0.001175 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.126 | 0.001276 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.13 | 0.002375 |
ORF3a | 78 | H78Q | caC | caA | 1 | 1 | B.1.139 | 0.000733 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.142 | 0.002899 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.160.16 | 0.000929 |
ORF3a | 78 | H78D | Cac | Gac | 1 | 1 | B.1.160.16 | 0.000929 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.160.22 | 0.006757 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.162 | 0.005025 |
ORF3a | 78 | H78L | cAc | cTc | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 78 | H78del1 | caC | ca- | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.177.12 | 0.000152 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.177.15 | 0.000631 |
ORF3a | 78 | H78del | CAC | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.177.18 | 0.00116 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.177.19 | 0.001431 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.177.32 | 0.00135 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.177.4 | 0.000211 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.177.43 | 0.001477 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.177.52 | 0.001757 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.177.57 | 0.000281 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.177.58 | 0.001332 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.177.6 | 0.000977 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.177.75 | 0.001041 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.177.76 | 0.002494 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.177.77 | 0.000726 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.177.8 | 0.000752 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.177.83 | 0.001481 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.177.85 | 0.005435 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.195 | 0.005025 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.206 | 0.000816 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.210 | 0.002132 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.210 | 0.002132 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.235 | 0.002519 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.235 | 0.002519 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.240 | 0.000216 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.248 | 0.029412 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.258.10 | 0.011364 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.258.12 | 0.007874 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.258.22 | 0.002667 |
ORF3a | 78 | H78Q | caC | caG | 1 | 1 | B.1.267 | 0.018519 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.270 | 0.005618 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.3 | 0.002618 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.301 | 0.005917 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.313 | 0.006579 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.324 | 0.001605 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.349 | 0.000715 |
ORF3a | 78 | H78D | Cac | Gac | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 78 | H78Q | caC | caG | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 78 | H78R | cAc | cGc | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.356 | 0.001727 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.36.1 | 0.00114 |
ORF3a | 78 | H78R | cAc | cGc | 1 | 1 | B.1.36.29 | 0.000517 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.36.35 | 0.002604 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.36.8 | 0.001 |
ORF3a | 78 | H78Q | caC | caG | 1 | 1 | B.1.36.8 | 0.001 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.367 | 0.000792 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.378 | 0.006849 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.380 | 0.006623 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.391 | 0.001127 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.404 | 0.001302 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.409 | 0.000781 |
ORF3a | 78 | H78N | Cac | Aac | 1 | 1 | B.1.415 | 0.014286 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.421 | 0.007463 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.425 | 0.002994 |
ORF3a | 78 | H78D | Cac | Gac | 1 | 1 | B.1.427 | 0.00005 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.428 | 0.00102 |
ORF3a | 78 | H78Q | caC | caA | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.432 | 0.011236 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.433 | 0.003195 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.441 | 0.009615 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.443 | 0.004673 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.452 | 0.013699 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.453 | 0.003236 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.456 | 0.003268 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.509 | 0.000866 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.510 | 0.026316 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.517 | 0.000427 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.524 | 0.001406 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.527 | 0.003704 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.539 | 0.017544 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.551 | 0.00129 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.558 | 0.004566 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.561 | 0.000397 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.570 | 0.002941 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.570 | 0.002941 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.576 | 0.000907 |
ORF3a | 78 | H78del | CAC | --- | 1 | 1 | B.1.585 | 0.027778 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.588 | 0.00091 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.593 | 0.01087 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.606 | 0.006024 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.609 | 0.000479 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 78 | H78D | Cac | Gac | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 78 | H78P | cAC | cCT | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 78 | H78del1 | caC | ca- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.617.3 | 0.002985 |
ORF3a | 78 | H78del | CAC | --- | 1 | 1 | B.1.627 | 0.00202 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.634 | 0.003425 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.636 | 0.006711 |
ORF3a | 78 | H78del | CAC | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.78 | 0.008547 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.8 | 0.001972 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.9 | 0.006173 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.1.96 | 0.018868 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | B.3 | 0.000831 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | B.52 | 0.010101 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | C.1 | 0.002392 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | C.14 | 0.004329 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | C.16 | 0.00106 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | C.17 | 0.055556 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | C.23 | 0.005814 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | C.30 | 0.001727 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | C.34 | 0.037037 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | C.36.3 | 0.000567 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | C.39 | 0.018868 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | C.5 | 0.090909 |
ORF3a | 78 | H78D | Cac | Gac | 1 | 1 | D.2 | 0.000075 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | L.3 | 0.003546 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | N.5 | 0.001767 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | N.5 | 0.001767 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | N.6 | 0.007092 |
ORF3a | 78 | H78Q | caC | caA | 1 | 1 | P.1 | 0.000016 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | P.1.12 | 0.000484 |
ORF3a | 78 | H78del | CAC | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | P.1.16 | 0.000374 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | P.1.16 | 0.000374 |
ORF3a | 78 | H78Y | Cac | Tac | 1 | 1 | P.1.17 | 0.000162 |
ORF3a | 78 | H78H | caC | caT | 1 | 1 | Z.1 | 0.00289 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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