CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 77 & Codon = gtC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a77V77VsyngtTgtC8918260.92704825621-25623

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a77V77VgtTgtC826891All0.000158
ORF3a77V77VgtTgtC575577AY.40.000895
ORF3a77V77VgtTgtC3454AY.140.002992
ORF3a77V77VgtTgtC3636AY.430.000159
ORF3a77V77VgtTgtC2626B.1.5260.000611
ORF3a77V77VgtTgtC2020B.1.1.2030.338983
ORF3a77V77VgtTgtC1718B.1.617.20.000064
ORF3a77V77VgtTgtC1415P.10.000221
ORF3a77V77VgtTgtC1114B.1.1.70.00001
ORF3a77V77VgtTgtC88AY.1030.00005
ORF3a77V77VgtTgtC58B.10.000046
ORF3a77V77VgtTgtC88B.1.1.2910.005939
ORF3a77V77VgtTgtC77B.1.20.000062
ORF3a77V77VgtTgtC66AY.200.000233
ORF3a77V77VgtTgtC24AY.260.000057
ORF3a77V77VgtTgtC24AY.390.000049
ORF3a77V77VgtTgtC14AY.440.000006
ORF3a77V77VgtTgtC44B.1.1.2220.000816
ORF3a77V77VgtTgtC34B.1.1770.00004
ORF3a77V77VgtTgtC44B.1.3510.000119
ORF3a77V77VgtTgtC33A0.001161
ORF3a77V77VgtTgtC33B.1.10.000054
ORF3a77V77VgtTgtC33B.1.1.1760.001318
ORF3a77V77VgtTgtC33B.1.1.1920.006928
ORF3a77V77VgtTgtC22AY.1200.000074
ORF3a77V77VgtTgtC22AY.290.000032
ORF3a77V77VgtTgtC22AY.4.40.000818
ORF3a77V77VgtTgtC22B.1.220.002635
ORF3a77V77VgtTgtC12B.1.3960.000706
ORF3a77V77VgtTgtC22C.370.000232
ORF3a77V77VgtTgtC22Q.80.00033
ORF3a77V77VgtTgtC11AY.1070.000466
ORF3a77V77VgtTgtC11AY.120.000316
ORF3a77V77VgtTgtC11AY.320.000532
ORF3a77V77VgtTgtC11AY.400.000964
ORF3a77V77VgtTgtC11AY.410.000294
ORF3a77V77VgtTgtC11AY.46.40.000165
ORF3a77V77VgtTgtC11AY.540.000095
ORF3a77V77VgtTgtC11AY.90.000068
ORF3a77V77VgtTgtC11B.1.1.2200.001859
ORF3a77V77VgtTgtC11B.1.1.500.000679
ORF3a77V77VgtTgtC11B.1.160.160.000929
ORF3a77V77VgtTgtC11B.1.2320.000537
ORF3a77V77VgtTgtC11B.1.2430.00007
ORF3a77V77VgtTgtC11B.1.2580.000067
ORF3a77V77VgtTgtC11B.1.4290.000024
ORF3a77V77VgtTgtC11B.1.5170.000427
ORF3a77V77VgtTgtC11B.1.5960.000087
ORF3a77V77VgtTgtC11D.20.000075

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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