CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 77 & Codon = gCt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a77V77AnonsyngTtgCt477477125621-25623

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a77V77AgTtgCt477477All0.000091
ORF3a77V77AgTtgCt255255AY.440.001552
ORF3a77V77AgTtgCt5858B.1.10.001052
ORF3a77V77AgTtgCt5050AY.40.000078
ORF3a77V77AgTtgCt1313AY.1190.000459
ORF3a77V77AgTtgCt1212P.10.000189
ORF3a77V77AgTtgCt1111B.1.1.70.00001
ORF3a77V77AgTtgCt1010B.1.617.20.000038
ORF3a77V77AgTtgCt88R.10.00072
ORF3a77V77AgTtgCt77B.10.000064
ORF3a77V77AgTtgCt77B.1.20.000062
ORF3a77V77AgTtgCt66AY.910.004383
ORF3a77V77AgTtgCt44AY.39.10.000158
ORF3a77V77AgTtgCt33AY.1130.000427
ORF3a77V77AgTtgCt33AY.200.000117
ORF3a77V77AgTtgCt33AY.30.00003
ORF3a77V77AgTtgCt11A.270.001656
ORF3a77V77AgTtgCt11AY.1000.000046
ORF3a77V77AgTtgCt11AY.1020.000027
ORF3a77V77AgTtgCt11AY.1030.000006
ORF3a77V77AgTtgCt11AY.230.00007
ORF3a77V77AgTtgCt11AY.250.000006
ORF3a77V77AgTtgCt11AY.260.000028
ORF3a77V77AgTtgCt11AY.390.000025
ORF3a77V77AgTtgCt11AY.420.00004
ORF3a77V77AgTtgCt11AY.630.000387
ORF3a77V77AgTtgCt11AY.740.000116
ORF3a77V77AgTtgCt11AY.9.10.000084
ORF3a77V77AgTtgCt11AY.920.000287
ORF3a77V77AgTtgCt11B.1.1.10.000327
ORF3a77V77AgTtgCt11B.1.1.1340.011364
ORF3a77V77AgTtgCt11B.1.1.2160.00089
ORF3a77V77AgTtgCt11B.1.1.2840.000107
ORF3a77V77AgTtgCt11B.1.1.2910.000742
ORF3a77V77AgTtgCt11B.1.1.3480.000796
ORF3a77V77AgTtgCt11B.1.1.3980.003226
ORF3a77V77AgTtgCt11B.1.1770.000013
ORF3a77V77AgTtgCt11B.1.177.310.011494
ORF3a77V77AgTtgCt11B.1.2320.000537
ORF3a77V77AgTtgCt11B.1.3150.006061
ORF3a77V77AgTtgCt11B.1.36.290.000517
ORF3a77V77AgTtgCt11B.1.5170.000427
ORF3a77V77AgTtgCt11B.1.6090.000479

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.