CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 77 & Codon = Ttt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a77V77FnonsynGttTtt1752817528125621-25623

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a77V77FGttTtt1752817528All0.003352
ORF3a77V77FGttTtt45694569B.1.177.600.998034
ORF3a77V77FGttTtt30163016B.1.1.70.0027
ORF3a77V77FGttTtt18891889B.1.617.20.007113
ORF3a77V77FGttTtt14071407AY.1020.037305
ORF3a77V77FGttTtt12411241AY.440.007554
ORF3a77V77FGttTtt849849AY.40.001321
ORF3a77V77FGttTtt611611B.1.1770.008045
ORF3a77V77FGttTtt450450B.1.36.250.993377
ORF3a77V77FGttTtt427427B.1.177.791
ORF3a77V77FGttTtt256256U.30.988417
ORF3a77V77FGttTtt189189R.10.017012
ORF3a77V77FGttTtt178178B.1.1.2220.036312
ORF3a77V77FGttTtt161161B.1.258.170.016739
ORF3a77V77FGttTtt134134AY.390.003311
ORF3a77V77FGttTtt130130AY.430.000576
ORF3a77V77FGttTtt114114U.21
ORF3a77V77FGttTtt8787AY.750.004874
ORF3a77V77FGttTtt8686B.1.20.000757
ORF3a77V77FGttTtt8484B.10.000769
ORF3a77V77FGttTtt8080AY.340.007757
ORF3a77V77FGttTtt7878U.11
ORF3a77V77FGttTtt7676B.1.2580.005058
ORF3a77V77FGttTtt7373AY.1030.000453
ORF3a77V77FGttTtt5656AY.1210.007578
ORF3a77V77FGttTtt5555AY.30.000547
ORF3a77V77FGttTtt5050B.1.10.000907
ORF3a77V77FGttTtt4747AY.420.001891
ORF3a77V77FGttTtt4747D.20.003527
ORF3a77V77FGttTtt4545B.1.5960.003921
ORF3a77V77FGttTtt4444B.1.438.40.93617
ORF3a77V77FGttTtt4040AY.250.000241
ORF3a77V77FGttTtt3333AY.9.20.001212
ORF3a77V77FGttTtt3232AY.460.003331
ORF3a77V77FGttTtt2929B.1.5260.000682
ORF3a77V77FGttTtt2828P.10.000441
ORF3a77V77FGttTtt2727AY.450.003285
ORF3a77V77FGttTtt2424B.1.3510.000713
ORF3a77V77FGttTtt2323AY.1110.004212
ORF3a77V77FGttTtt2323P.20.004293
ORF3a77V77FGttTtt1919B.1.1.5190.000755
ORF3a77V77FGttTtt1818AY.98.10.000872
ORF3a77V77FGttTtt1818B.1.2430.001253
ORF3a77V77FGttTtt1818P.1.140.00086
ORF3a77V77FGttTtt1717AY.9.10.001423
ORF3a77V77FGttTtt1616AY.260.000453
ORF3a77V77FGttTtt1616AY.330.001068
ORF3a77V77FGttTtt1616AY.34.10.008159
ORF3a77V77FGttTtt1616B.1.360.002334
ORF3a77V77FGttTtt1515AY.4.20.000325
ORF3a77V77FGttTtt1515B.1.1.3170.006175
ORF3a77V77FGttTtt1414AY.990.01469
ORF3a77V77FGttTtt1414B.1.4290.000329
ORF3a77V77FGttTtt1212AY.1200.000446
ORF3a77V77FGttTtt1111AY.980.000869
ORF3a77V77FGttTtt1111P.1.170.001779
ORF3a77V77FGttTtt1010AY.360.001482
ORF3a77V77FGttTtt1010AY.46.20.006353
ORF3a77V77FGttTtt1010B.1.1.3120.01912
ORF3a77V77FGttTtt99AY.160.003417
ORF3a77V77FGttTtt99AY.200.00035
ORF3a77V77FGttTtt99AY.46.60.00065
ORF3a77V77FGttTtt99AY.50.000186
ORF3a77V77FGttTtt99AY.840.003937
ORF3a77V77FGttTtt99B.1.1600.000281
ORF3a77V77FGttTtt99B.1.160.160.008364
ORF3a77V77FGttTtt99B.1.177.810.001704
ORF3a77V77FGttTtt99B.1.4560.029412
ORF3a77V77FGttTtt99B.1.6250.021176
ORF3a77V77FGttTtt88AY.1000.000368
ORF3a77V77FGttTtt77AY.1080.007718
ORF3a77V77FGttTtt77AY.1180.000439
ORF3a77V77FGttTtt77AY.540.000667
ORF3a77V77FGttTtt77B.1.177.210.000535
ORF3a77V77FGttTtt77B.1.4000.003003
ORF3a77V77FGttTtt77B.1.4270.000353
ORF3a77V77FGttTtt77P.1.70.002235
ORF3a77V77FGttTtt66AY.1170.000507
ORF3a77V77FGttTtt66AY.230.000418
ORF3a77V77FGttTtt66AY.290.000095
ORF3a77V77FGttTtt66AY.3.10.000512
ORF3a77V77FGttTtt66AY.610.000629
ORF3a77V77FGttTtt66C.370.000696
ORF3a77V77FGttTtt55AY.1190.000177
ORF3a77V77FGttTtt55AY.39.10.000198
ORF3a77V77FGttTtt55AY.770.005637
ORF3a77V77FGttTtt55AY.99.20.000461
ORF3a77V77FGttTtt55B.1.1.2940.006329
ORF3a77V77FGttTtt55B.1.1.3060.002192
ORF3a77V77FGttTtt55B.1.2210.000355
ORF3a77V77FGttTtt55B.1.2360.010267
ORF3a77V77FGttTtt55B.1.4380.03268
ORF3a77V77FGttTtt55C.350.00387
ORF3a77V77FGttTtt55L.30.01773
ORF3a77V77FGttTtt44AY.170.032787
ORF3a77V77FGttTtt44AY.590.002119
ORF3a77V77FGttTtt44B.1.1.1740.013514
ORF3a77V77FGttTtt44B.1.1.280.001245
ORF3a77V77FGttTtt44B.1.1.390.002039
ORF3a77V77FGttTtt44B.1.177.60.003906
ORF3a77V77FGttTtt44B.1.36.390.008869
ORF3a77V77FGttTtt44B.1.5250.000453
ORF3a77V77FGttTtt44B.1.619.10.002566
ORF3a77V77FGttTtt44P.1.120.001936
ORF3a77V77FGttTtt33A.2.40.010101
ORF3a77V77FGttTtt33AY.110.004016
ORF3a77V77FGttTtt33AY.1100.000338
ORF3a77V77FGttTtt33AY.16.10.00141
ORF3a77V77FGttTtt33AY.470.000093
ORF3a77V77FGttTtt33AY.560.004815
ORF3a77V77FGttTtt33AY.7.20.001678
ORF3a77V77FGttTtt33AY.960.006224
ORF3a77V77FGttTtt33B.1.1.10.00098
ORF3a77V77FGttTtt33B.1.1.1690.054545
ORF3a77V77FGttTtt33B.1.1.250.001706
ORF3a77V77FGttTtt33B.1.177.100.002634
ORF3a77V77FGttTtt33B.1.2400.000647
ORF3a77V77FGttTtt33B.1.351.30.002629
ORF3a77V77FGttTtt33B.1.5680.003333
ORF3a77V77FGttTtt33B.520.030303
ORF3a77V77FGttTtt33Q.30.000435
ORF3a77V77FGttTtt33Q.80.000495
ORF3a77V77FGttTtt220.111111
ORF3a77V77FGttTtt22AY.10.000791
ORF3a77V77FGttTtt22AY.1060.00067
ORF3a77V77FGttTtt22AY.1160.000574
ORF3a77V77FGttTtt22AY.130.000322
ORF3a77V77FGttTtt22AY.140.000176
ORF3a77V77FGttTtt22AY.550.001835
ORF3a77V77FGttTtt22AY.600.001876
ORF3a77V77FGttTtt22AY.630.000774
ORF3a77V77FGttTtt22AY.680.000547
ORF3a77V77FGttTtt22AY.690.000373
ORF3a77V77FGttTtt22AY.75.10.000361
ORF3a77V77FGttTtt22AY.890.009804
ORF3a77V77FGttTtt22B0.000256
ORF3a77V77FGttTtt22B.1.1.2140.000111
ORF3a77V77FGttTtt22B.1.1.2160.001781
ORF3a77V77FGttTtt22B.1.1.3720.001377
ORF3a77V77FGttTtt22B.1.177.70.00033
ORF3a77V77FGttTtt22B.1.177.860.000367
ORF3a77V77FGttTtt22B.1.220.002635
ORF3a77V77FGttTtt22B.1.2340.000264
ORF3a77V77FGttTtt22B.1.36.10.002281
ORF3a77V77FGttTtt22B.1.5070.022472
ORF3a77V77FGttTtt22B.1.5270.007407
ORF3a77V77FGttTtt22B.1.5400.019417
ORF3a77V77FGttTtt22B.1.595.10.011696
ORF3a77V77FGttTtt22B.1.5970.009259
ORF3a77V77FGttTtt22C.280.08
ORF3a77V77FGttTtt11A0.000387
ORF3a77V77FGttTtt11AA.60.016129
ORF3a77V77FGttTtt11AY.1010.00049
ORF3a77V77FGttTtt11AY.1040.001984
ORF3a77V77FGttTtt11AY.1050.000643
ORF3a77V77FGttTtt11AY.190.00114
ORF3a77V77FGttTtt11AY.270.000065
ORF3a77V77FGttTtt11AY.350.000233
ORF3a77V77FGttTtt11AY.4.2.10.000149
ORF3a77V77FGttTtt11AY.4.50.000107
ORF3a77V77FGttTtt11AY.46.40.000165
ORF3a77V77FGttTtt11AY.5.30.000337
ORF3a77V77FGttTtt11AY.510.000909
ORF3a77V77FGttTtt11AY.520.000814
ORF3a77V77FGttTtt11AY.580.000907
ORF3a77V77FGttTtt11AY.60.000041
ORF3a77V77FGttTtt11AY.640.000595
ORF3a77V77FGttTtt11AY.660.00107
ORF3a77V77FGttTtt11AY.700.000209
ORF3a77V77FGttTtt11AY.710.000475
ORF3a77V77FGttTtt11AY.740.000116
ORF3a77V77FGttTtt11AY.780.001541
ORF3a77V77FGttTtt11AY.850.000427
ORF3a77V77FGttTtt11AY.880.000884
ORF3a77V77FGttTtt11AY.90.000068
ORF3a77V77FGttTtt11AY.910.00073
ORF3a77V77FGttTtt11AY.920.000287
ORF3a77V77FGttTtt11AY.930.000273
ORF3a77V77FGttTtt11AY.99.10.001553
ORF3a77V77FGttTtt11B.1.1.1890.001513
ORF3a77V77FGttTtt11B.1.1.1980.001468
ORF3a77V77FGttTtt11B.1.1.2840.000107
ORF3a77V77FGttTtt11B.1.1.3040.002809
ORF3a77V77FGttTtt11B.1.1.3070.002532
ORF3a77V77FGttTtt11B.1.1.3160.000925
ORF3a77V77FGttTtt11B.1.1.3180.000302
ORF3a77V77FGttTtt11B.1.1.330.000421
ORF3a77V77FGttTtt11B.1.1.3750.011905
ORF3a77V77FGttTtt11B.1.1.4030.025641
ORF3a77V77FGttTtt11B.1.1.4090.002833
ORF3a77V77FGttTtt11B.1.1.4200.001006
ORF3a77V77FGttTtt11B.1.1.4320.001266
ORF3a77V77FGttTtt11B.1.1.4480.002033
ORF3a77V77FGttTtt11B.1.1.460.004367
ORF3a77V77FGttTtt11B.1.1.530.013699
ORF3a77V77FGttTtt11B.1.1.540.003021
ORF3a77V77FGttTtt11B.1.110.30.000718
ORF3a77V77FGttTtt11B.1.1110.001175
ORF3a77V77FGttTtt11B.1.177.730.000566
ORF3a77V77FGttTtt11B.1.177.750.001041
ORF3a77V77FGttTtt11B.1.1780.02381
ORF3a77V77FGttTtt11B.1.2140.003663
ORF3a77V77FGttTtt11B.1.3110.000275
ORF3a77V77FGttTtt11B.1.3200.001245
ORF3a77V77FGttTtt11B.1.3490.000715
ORF3a77V77FGttTtt11B.1.351.20.000303
ORF3a77V77FGttTtt11B.1.36.220.001208
ORF3a77V77FGttTtt11B.1.36.240.006173
ORF3a77V77FGttTtt11B.1.36.80.001
ORF3a77V77FGttTtt11B.1.36.90.003215
ORF3a77V77FGttTtt11B.1.3800.006623
ORF3a77V77FGttTtt11B.1.466.10.007194
ORF3a77V77FGttTtt11B.1.4710.002732
ORF3a77V77FGttTtt11B.1.5760.000907
ORF3a77V77FGttTtt11B.1.5810.009434
ORF3a77V77FGttTtt11B.1.5820.000491
ORF3a77V77FGttTtt11B.1.617.10.000129
ORF3a77V77FGttTtt11B.1.6280.000352
ORF3a77V77FGttTtt11B.1.6370.000073
ORF3a77V77FGttTtt11B.1.80.001972
ORF3a77V77FGttTtt11B.400.000364
ORF3a77V77FGttTtt11B.60.00091
ORF3a77V77FGttTtt11D.30.005917
ORF3a77V77FGttTtt11P.60.003145
ORF3a77V77FGttTtt11Q.10.000126
ORF3a77V77FGttTtt11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.