CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 77 | V77F | nonsyn | Gtt | Ttt | 17528 | 17528 | 1 | 25621-25623 | |
ORF3a | 77 | V77I | nonsyn | Gtt | Att | 1343 | 1343 | 1 | 25621-25623 | |
ORF3a | 77 | V77V | syn | gtT | gtC | 891 | 826 | 0.927048 | 25621-25623 | |
ORF3a | 77 | V77V | syn | gtT | gtG | 891 | 35 | 0.0392817 | 25621-25623 | |
ORF3a | 77 | V77V | syn | gtT | gtA | 891 | 30 | 0.03367 | 25621-25623 | |
ORF3a | 77 | V77A | nonsyn | gTt | gCt | 477 | 477 | 1 | 25621-25623 | |
ORF3a | 77 | V77L | nonsyn | Gtt | Ctt | 76 | 74 | 0.973684 | 25621-25623 | |
ORF3a | 77 | V77L | nonsyn | GtT | CtG | 76 | 2 | 0.0263158 | 25621-25623 | |
ORF3a | 77 | V77del | del | GTT | --- | 45 | 45 | 1 | 25621-25623 | |
ORF3a | 77 | V77G | nonsyn | gTt | gGt | 10 | 9 | 0.9 | 25621-25623 | |
ORF3a | 77 | V77G | nonsyn | gTT | gGG | 10 | 1 | 0.1 | 25621-25623 | |
ORF3a | 77 | V77del2 | del | GTt | --t | 5 | 3 | 0.6 | 25621-25623 | |
ORF3a | 77 | V77del2 | del | GTT | --N | 5 | 1 | 0.2 | 25621-25623 | |
ORF3a | 77 | V77del2 | del | gTT | g-- | 5 | 1 | 0.2 | 25621-25623 | |
ORF3a | 77 | V77D | nonsyn | gTt | gAt | 4 | 4 | 1 | 25621-25623 | |
ORF3a | 77 | V77H | nonsyn | GTt | CAt | 4 | 2 | 0.5 | 25621-25623 | |
ORF3a | 77 | V77H | nonsyn | GTT | CAC | 4 | 2 | 0.5 | 25621-25623 | |
ORF3a | 77 | V77del1 | del | Gtt | -tt | 3 | 3 | 1 | 25621-25623 | |
ORF3a | 77 | V77E | nonsyn | gTT | gAG | 2 | 2 | 1 | 25621-25623 | |
ORF3a | 77 | V77Q | nonsyn | GTT | CAG | 2 | 2 | 1 | 25621-25623 | |
ORF3a | 77 | V77S | nonsyn | GTt | TCt | 2 | 2 | 1 | 25621-25623 | |
ORF3a | 77 | V77C | nonsyn | GTt | TGt | 1 | 1 | 1 | 25621-25623 | |
ORF3a | 77 | V77Y | nonsyn | GTt | TAt | 1 | 1 | 1 | 25621-25623 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 77 | V77F | Gtt | Ttt | 17528 | 17528 | All | 0.003352 |
ORF3a | 77 | V77F | Gtt | Ttt | 4569 | 4569 | B.1.177.60 | 0.998034 |
ORF3a | 77 | V77F | Gtt | Ttt | 3016 | 3016 | B.1.1.7 | 0.0027 |
ORF3a | 77 | V77F | Gtt | Ttt | 1889 | 1889 | B.1.617.2 | 0.007113 |
ORF3a | 77 | V77F | Gtt | Ttt | 1407 | 1407 | AY.102 | 0.037305 |
ORF3a | 77 | V77I | Gtt | Att | 1343 | 1343 | All | 0.000257 |
ORF3a | 77 | V77F | Gtt | Ttt | 1241 | 1241 | AY.44 | 0.007554 |
ORF3a | 77 | V77V | gtT | gtC | 826 | 891 | All | 0.000158 |
ORF3a | 77 | V77V | gtT | gtG | 35 | 891 | All | 0.000007 |
ORF3a | 77 | V77V | gtT | gtA | 30 | 891 | All | 0.000006 |
ORF3a | 77 | V77F | Gtt | Ttt | 849 | 849 | AY.4 | 0.001321 |
ORF3a | 77 | V77F | Gtt | Ttt | 611 | 611 | B.1.177 | 0.008045 |
ORF3a | 77 | V77V | gtT | gtC | 575 | 577 | AY.4 | 0.000895 |
ORF3a | 77 | V77V | gtT | gtA | 2 | 577 | AY.4 | 0.000003 |
ORF3a | 77 | V77A | gTt | gCt | 477 | 477 | All | 0.000091 |
ORF3a | 77 | V77F | Gtt | Ttt | 450 | 450 | B.1.36.25 | 0.993377 |
ORF3a | 77 | V77F | Gtt | Ttt | 427 | 427 | B.1.177.79 | 1 |
ORF3a | 77 | V77F | Gtt | Ttt | 256 | 256 | U.3 | 0.988417 |
ORF3a | 77 | V77A | gTt | gCt | 255 | 255 | AY.44 | 0.001552 |
ORF3a | 77 | V77I | Gtt | Att | 250 | 250 | AY.51 | 0.227273 |
ORF3a | 77 | V77I | Gtt | Att | 238 | 238 | B.1.1.216 | 0.211932 |
ORF3a | 77 | V77F | Gtt | Ttt | 189 | 189 | R.1 | 0.017012 |
ORF3a | 77 | V77I | Gtt | Att | 185 | 185 | AY.44 | 0.001126 |
ORF3a | 77 | V77F | Gtt | Ttt | 178 | 178 | B.1.1.222 | 0.036312 |
ORF3a | 77 | V77F | Gtt | Ttt | 161 | 161 | B.1.258.17 | 0.016739 |
ORF3a | 77 | V77F | Gtt | Ttt | 134 | 134 | AY.39 | 0.003311 |
ORF3a | 77 | V77F | Gtt | Ttt | 130 | 130 | AY.43 | 0.000576 |
ORF3a | 77 | V77F | Gtt | Ttt | 114 | 114 | U.2 | 1 |
ORF3a | 77 | V77I | Gtt | Att | 90 | 90 | AY.47 | 0.002799 |
ORF3a | 77 | V77I | Gtt | Att | 88 | 88 | B.1.1.7 | 0.000079 |
ORF3a | 77 | V77I | Gtt | Att | 88 | 88 | B.1.36 | 0.012839 |
ORF3a | 77 | V77F | Gtt | Ttt | 87 | 87 | AY.75 | 0.004874 |
ORF3a | 77 | V77F | Gtt | Ttt | 86 | 86 | B.1.2 | 0.000757 |
ORF3a | 77 | V77F | Gtt | Ttt | 84 | 84 | B.1 | 0.000769 |
ORF3a | 77 | V77F | Gtt | Ttt | 80 | 80 | AY.34 | 0.007757 |
ORF3a | 77 | V77F | Gtt | Ttt | 78 | 78 | U.1 | 1 |
ORF3a | 77 | V77L | Gtt | Ctt | 74 | 76 | All | 0.000014 |
ORF3a | 77 | V77L | GtT | CtG | 2 | 76 | All | 0 |
ORF3a | 77 | V77F | Gtt | Ttt | 76 | 76 | B.1.258 | 0.005058 |
ORF3a | 77 | V77F | Gtt | Ttt | 73 | 73 | AY.103 | 0.000453 |
ORF3a | 77 | V77I | Gtt | Att | 61 | 61 | B.1.617.2 | 0.00023 |
ORF3a | 77 | V77A | gTt | gCt | 58 | 58 | B.1.1 | 0.001052 |
ORF3a | 77 | V77F | Gtt | Ttt | 56 | 56 | AY.121 | 0.007578 |
ORF3a | 77 | V77F | Gtt | Ttt | 55 | 55 | AY.3 | 0.000547 |
ORF3a | 77 | V77V | gtT | gtC | 34 | 54 | AY.14 | 0.002992 |
ORF3a | 77 | V77V | gtT | gtA | 20 | 54 | AY.14 | 0.00176 |
ORF3a | 77 | V77A | gTt | gCt | 50 | 50 | AY.4 | 0.000078 |
ORF3a | 77 | V77F | Gtt | Ttt | 50 | 50 | B.1.1 | 0.000907 |
ORF3a | 77 | V77F | Gtt | Ttt | 47 | 47 | AY.42 | 0.001891 |
ORF3a | 77 | V77F | Gtt | Ttt | 47 | 47 | D.2 | 0.003527 |
ORF3a | 77 | V77del | GTT | --- | 45 | 45 | All | 0.000009 |
ORF3a | 77 | V77F | Gtt | Ttt | 45 | 45 | B.1.596 | 0.003921 |
ORF3a | 77 | V77F | Gtt | Ttt | 44 | 44 | B.1.438.4 | 0.93617 |
ORF3a | 77 | V77I | Gtt | Att | 43 | 43 | B.1 | 0.000394 |
ORF3a | 77 | V77F | Gtt | Ttt | 40 | 40 | AY.25 | 0.000241 |
ORF3a | 77 | V77V | gtT | gtC | 36 | 36 | AY.43 | 0.000159 |
ORF3a | 77 | V77F | Gtt | Ttt | 33 | 33 | AY.9.2 | 0.001212 |
ORF3a | 77 | V77F | Gtt | Ttt | 32 | 32 | AY.46 | 0.003331 |
ORF3a | 77 | V77F | Gtt | Ttt | 29 | 29 | B.1.526 | 0.000682 |
ORF3a | 77 | V77F | Gtt | Ttt | 28 | 28 | P.1 | 0.000441 |
ORF3a | 77 | V77I | Gtt | Att | 27 | 27 | AY.4 | 0.000042 |
ORF3a | 77 | V77F | Gtt | Ttt | 27 | 27 | AY.45 | 0.003285 |
ORF3a | 77 | V77V | gtT | gtC | 26 | 26 | B.1.526 | 0.000611 |
ORF3a | 77 | V77F | Gtt | Ttt | 24 | 24 | B.1.351 | 0.000713 |
ORF3a | 77 | V77F | Gtt | Ttt | 23 | 23 | AY.111 | 0.004212 |
ORF3a | 77 | V77I | Gtt | Att | 23 | 23 | B.1.517 | 0.009821 |
ORF3a | 77 | V77F | Gtt | Ttt | 23 | 23 | P.2 | 0.004293 |
ORF3a | 77 | V77I | Gtt | Att | 20 | 20 | AY.100 | 0.00092 |
ORF3a | 77 | V77V | gtT | gtC | 20 | 20 | B.1.1.203 | 0.338983 |
ORF3a | 77 | V77F | Gtt | Ttt | 19 | 19 | B.1.1.519 | 0.000755 |
ORF3a | 77 | V77I | Gtt | Att | 18 | 18 | AY.25 | 0.000108 |
ORF3a | 77 | V77F | Gtt | Ttt | 18 | 18 | AY.98.1 | 0.000872 |
ORF3a | 77 | V77I | Gtt | Att | 18 | 18 | B.1.2 | 0.000158 |
ORF3a | 77 | V77F | Gtt | Ttt | 18 | 18 | B.1.243 | 0.001253 |
ORF3a | 77 | V77V | gtT | gtC | 17 | 18 | B.1.617.2 | 0.000064 |
ORF3a | 77 | V77V | gtT | gtG | 1 | 18 | B.1.617.2 | 0.000004 |
ORF3a | 77 | V77F | Gtt | Ttt | 18 | 18 | P.1.14 | 0.00086 |
ORF3a | 77 | V77I | Gtt | Att | 17 | 17 | AY.104 | 0.03373 |
ORF3a | 77 | V77F | Gtt | Ttt | 17 | 17 | AY.9.1 | 0.001423 |
ORF3a | 77 | V77F | Gtt | Ttt | 16 | 16 | AY.26 | 0.000453 |
ORF3a | 77 | V77F | Gtt | Ttt | 16 | 16 | AY.33 | 0.001068 |
ORF3a | 77 | V77F | Gtt | Ttt | 16 | 16 | AY.34.1 | 0.008159 |
ORF3a | 77 | V77V | gtT | gtG | 16 | 16 | AY.75 | 0.000896 |
ORF3a | 77 | V77F | Gtt | Ttt | 16 | 16 | B.1.36 | 0.002334 |
ORF3a | 77 | V77F | Gtt | Ttt | 15 | 15 | AY.4.2 | 0.000325 |
ORF3a | 77 | V77F | Gtt | Ttt | 15 | 15 | B.1.1.317 | 0.006175 |
ORF3a | 77 | V77V | gtT | gtC | 14 | 15 | P.1 | 0.000221 |
ORF3a | 77 | V77V | gtT | gtG | 1 | 15 | P.1 | 0.000016 |
ORF3a | 77 | V77F | Gtt | Ttt | 14 | 14 | AY.99 | 0.01469 |
ORF3a | 77 | V77V | gtT | gtC | 11 | 14 | B.1.1.7 | 0.00001 |
ORF3a | 77 | V77V | gtT | gtG | 2 | 14 | B.1.1.7 | 0.000002 |
ORF3a | 77 | V77V | gtT | gtA | 1 | 14 | B.1.1.7 | 0.000001 |
ORF3a | 77 | V77F | Gtt | Ttt | 14 | 14 | B.1.429 | 0.000329 |
ORF3a | 77 | V77A | gTt | gCt | 13 | 13 | AY.119 | 0.000459 |
ORF3a | 77 | V77I | Gtt | Att | 13 | 13 | AY.65 | 0.00693 |
ORF3a | 77 | V77del | GTT | --- | 13 | 13 | B.1.1.7 | 0.000012 |
ORF3a | 77 | V77F | Gtt | Ttt | 12 | 12 | AY.120 | 0.000446 |
ORF3a | 77 | V77A | gTt | gCt | 12 | 12 | P.1 | 0.000189 |
ORF3a | 77 | V77F | Gtt | Ttt | 11 | 11 | AY.98 | 0.000869 |
ORF3a | 77 | V77A | gTt | gCt | 11 | 11 | B.1.1.7 | 0.00001 |
ORF3a | 77 | V77F | Gtt | Ttt | 11 | 11 | P.1.17 | 0.001779 |
ORF3a | 77 | V77G | gTt | gGt | 9 | 10 | All | 0.000002 |
ORF3a | 77 | V77G | gTT | gGG | 1 | 10 | All | 0 |
ORF3a | 77 | V77I | Gtt | Att | 10 | 10 | AY.120 | 0.000372 |
ORF3a | 77 | V77F | Gtt | Ttt | 10 | 10 | AY.36 | 0.001482 |
ORF3a | 77 | V77F | Gtt | Ttt | 10 | 10 | AY.46.2 | 0.006353 |
ORF3a | 77 | V77F | Gtt | Ttt | 10 | 10 | B.1.1.312 | 0.01912 |
ORF3a | 77 | V77A | gTt | gCt | 10 | 10 | B.1.617.2 | 0.000038 |
ORF3a | 77 | V77L | Gtt | Ctt | 9 | 9 | AY.103 | 0.000056 |
ORF3a | 77 | V77F | Gtt | Ttt | 9 | 9 | AY.16 | 0.003417 |
ORF3a | 77 | V77F | Gtt | Ttt | 9 | 9 | AY.20 | 0.00035 |
ORF3a | 77 | V77F | Gtt | Ttt | 9 | 9 | AY.46.6 | 0.00065 |
ORF3a | 77 | V77F | Gtt | Ttt | 9 | 9 | AY.5 | 0.000186 |
ORF3a | 77 | V77F | Gtt | Ttt | 9 | 9 | AY.84 | 0.003937 |
ORF3a | 77 | V77I | Gtt | Att | 9 | 9 | B.1.1 | 0.000163 |
ORF3a | 77 | V77F | Gtt | Ttt | 9 | 9 | B.1.160 | 0.000281 |
ORF3a | 77 | V77F | Gtt | Ttt | 9 | 9 | B.1.160.16 | 0.008364 |
ORF3a | 77 | V77F | Gtt | Ttt | 9 | 9 | B.1.177.81 | 0.001704 |
ORF3a | 77 | V77F | Gtt | Ttt | 9 | 9 | B.1.456 | 0.029412 |
ORF3a | 77 | V77F | Gtt | Ttt | 9 | 9 | B.1.625 | 0.021176 |
ORF3a | 77 | V77I | Gtt | Att | 8 | 8 | AM.1 | 0.888889 |
ORF3a | 77 | V77F | Gtt | Ttt | 8 | 8 | AY.100 | 0.000368 |
ORF3a | 77 | V77V | gtT | gtC | 8 | 8 | AY.103 | 0.00005 |
ORF3a | 77 | V77I | Gtt | Att | 8 | 8 | AY.37 | 0.002528 |
ORF3a | 77 | V77L | Gtt | Ctt | 8 | 8 | AY.44 | 0.000049 |
ORF3a | 77 | V77V | gtT | gtC | 5 | 8 | B.1 | 0.000046 |
ORF3a | 77 | V77V | gtT | gtA | 2 | 8 | B.1 | 0.000018 |
ORF3a | 77 | V77V | gtT | gtG | 1 | 8 | B.1 | 0.000009 |
ORF3a | 77 | V77V | gtT | gtC | 8 | 8 | B.1.1.291 | 0.005939 |
ORF3a | 77 | V77I | Gtt | Att | 8 | 8 | B.1.1.519 | 0.000318 |
ORF3a | 77 | V77L | Gtt | Ctt | 8 | 8 | B.1.1.7 | 0.000007 |
ORF3a | 77 | V77A | gTt | gCt | 8 | 8 | R.1 | 0.00072 |
ORF3a | 77 | V77I | Gtt | Att | 7 | 7 | AY.103 | 0.000043 |
ORF3a | 77 | V77F | Gtt | Ttt | 7 | 7 | AY.108 | 0.007718 |
ORF3a | 77 | V77F | Gtt | Ttt | 7 | 7 | AY.118 | 0.000439 |
ORF3a | 77 | V77I | Gtt | Att | 7 | 7 | AY.3 | 0.00007 |
ORF3a | 77 | V77F | Gtt | Ttt | 7 | 7 | AY.54 | 0.000667 |
ORF3a | 77 | V77I | Gtt | Att | 7 | 7 | AY.9.2 | 0.000257 |
ORF3a | 77 | V77A | gTt | gCt | 7 | 7 | B.1 | 0.000064 |
ORF3a | 77 | V77F | Gtt | Ttt | 7 | 7 | B.1.177.21 | 0.000535 |
ORF3a | 77 | V77A | gTt | gCt | 7 | 7 | B.1.2 | 0.000062 |
ORF3a | 77 | V77V | gtT | gtC | 7 | 7 | B.1.2 | 0.000062 |
ORF3a | 77 | V77F | Gtt | Ttt | 7 | 7 | B.1.400 | 0.003003 |
ORF3a | 77 | V77F | Gtt | Ttt | 7 | 7 | B.1.427 | 0.000353 |
ORF3a | 77 | V77F | Gtt | Ttt | 7 | 7 | P.1.7 | 0.002235 |
ORF3a | 77 | V77I | Gtt | Att | 6 | 6 | AY.105 | 0.003859 |
ORF3a | 77 | V77F | Gtt | Ttt | 6 | 6 | AY.117 | 0.000507 |
ORF3a | 77 | V77V | gtT | gtC | 6 | 6 | AY.20 | 0.000233 |
ORF3a | 77 | V77F | Gtt | Ttt | 6 | 6 | AY.23 | 0.000418 |
ORF3a | 77 | V77F | Gtt | Ttt | 6 | 6 | AY.29 | 0.000095 |
ORF3a | 77 | V77F | Gtt | Ttt | 6 | 6 | AY.3.1 | 0.000512 |
ORF3a | 77 | V77I | Gtt | Att | 6 | 6 | AY.43 | 0.000027 |
ORF3a | 77 | V77F | Gtt | Ttt | 6 | 6 | AY.61 | 0.000629 |
ORF3a | 77 | V77A | gTt | gCt | 6 | 6 | AY.91 | 0.004383 |
ORF3a | 77 | V77L | Gtt | Ctt | 6 | 6 | B.1 | 0.000055 |
ORF3a | 77 | V77L | Gtt | Ctt | 6 | 6 | B.1.1.187 | 0.053097 |
ORF3a | 77 | V77F | Gtt | Ttt | 6 | 6 | C.37 | 0.000696 |
ORF3a | 77 | V77L | Gtt | Ctt | 5 | 5 | A.2.5.3 | 0.051546 |
ORF3a | 77 | V77del2 | GTt | --t | 3 | 5 | All | 0.000001 |
ORF3a | 77 | V77del2 | GTT | --N | 1 | 5 | All | 0 |
ORF3a | 77 | V77del2 | gTT | g-- | 1 | 5 | All | 0 |
ORF3a | 77 | V77L | Gtt | Ctt | 5 | 5 | AY.102 | 0.000133 |
ORF3a | 77 | V77F | Gtt | Ttt | 5 | 5 | AY.119 | 0.000177 |
ORF3a | 77 | V77F | Gtt | Ttt | 5 | 5 | AY.39.1 | 0.000198 |
ORF3a | 77 | V77L | Gtt | Ctt | 5 | 5 | AY.4 | 0.000008 |
ORF3a | 77 | V77F | Gtt | Ttt | 5 | 5 | AY.77 | 0.005637 |
ORF3a | 77 | V77F | Gtt | Ttt | 5 | 5 | AY.99.2 | 0.000461 |
ORF3a | 77 | V77F | Gtt | Ttt | 5 | 5 | B.1.1.294 | 0.006329 |
ORF3a | 77 | V77F | Gtt | Ttt | 5 | 5 | B.1.1.306 | 0.002192 |
ORF3a | 77 | V77del | GTT | --- | 5 | 5 | B.1.177 | 0.000066 |
ORF3a | 77 | V77F | Gtt | Ttt | 5 | 5 | B.1.221 | 0.000355 |
ORF3a | 77 | V77F | Gtt | Ttt | 5 | 5 | B.1.236 | 0.010267 |
ORF3a | 77 | V77F | Gtt | Ttt | 5 | 5 | B.1.438 | 0.03268 |
ORF3a | 77 | V77F | Gtt | Ttt | 5 | 5 | C.35 | 0.00387 |
ORF3a | 77 | V77F | Gtt | Ttt | 5 | 5 | L.3 | 0.01773 |
ORF3a | 77 | V77L | GtT | CtG | 2 | 4 | 0.111111 | |
ORF3a | 77 | V77L | Gtt | Ctt | 2 | 4 | 0.111111 | |
ORF3a | 77 | V77D | gTt | gAt | 4 | 4 | All | 0.000001 |
ORF3a | 77 | V77H | GTT | CAC | 2 | 4 | All | 0 |
ORF3a | 77 | V77H | GTt | CAt | 2 | 4 | All | 0 |
ORF3a | 77 | V77F | Gtt | Ttt | 4 | 4 | AY.17 | 0.032787 |
ORF3a | 77 | V77V | gtT | gtG | 2 | 4 | AY.26 | 0.000057 |
ORF3a | 77 | V77V | gtT | gtC | 2 | 4 | AY.26 | 0.000057 |
ORF3a | 77 | V77I | Gtt | Att | 4 | 4 | AY.39 | 0.000099 |
ORF3a | 77 | V77V | gtT | gtG | 2 | 4 | AY.39 | 0.000049 |
ORF3a | 77 | V77V | gtT | gtC | 2 | 4 | AY.39 | 0.000049 |
ORF3a | 77 | V77A | gTt | gCt | 4 | 4 | AY.39.1 | 0.000158 |
ORF3a | 77 | V77V | gtT | gtG | 3 | 4 | AY.44 | 0.000018 |
ORF3a | 77 | V77V | gtT | gtC | 1 | 4 | AY.44 | 0.000006 |
ORF3a | 77 | V77F | Gtt | Ttt | 4 | 4 | AY.59 | 0.002119 |
ORF3a | 77 | V77I | Gtt | Att | 4 | 4 | AY.61 | 0.000419 |
ORF3a | 77 | V77F | Gtt | Ttt | 4 | 4 | B.1.1.174 | 0.013514 |
ORF3a | 77 | V77V | gtT | gtC | 4 | 4 | B.1.1.222 | 0.000816 |
ORF3a | 77 | V77F | Gtt | Ttt | 4 | 4 | B.1.1.28 | 0.001245 |
ORF3a | 77 | V77F | Gtt | Ttt | 4 | 4 | B.1.1.39 | 0.002039 |
ORF3a | 77 | V77V | gtT | gtC | 3 | 4 | B.1.177 | 0.00004 |
ORF3a | 77 | V77V | gtT | gtA | 1 | 4 | B.1.177 | 0.000013 |
ORF3a | 77 | V77F | Gtt | Ttt | 4 | 4 | B.1.177.6 | 0.003906 |
ORF3a | 77 | V77V | gtT | gtC | 4 | 4 | B.1.351 | 0.000119 |
ORF3a | 77 | V77F | Gtt | Ttt | 4 | 4 | B.1.36.39 | 0.008869 |
ORF3a | 77 | V77F | Gtt | Ttt | 4 | 4 | B.1.525 | 0.000453 |
ORF3a | 77 | V77L | Gtt | Ctt | 4 | 4 | B.1.617.2 | 0.000015 |
ORF3a | 77 | V77F | Gtt | Ttt | 4 | 4 | B.1.619.1 | 0.002566 |
ORF3a | 77 | V77I | Gtt | Att | 4 | 4 | C.37 | 0.000464 |
ORF3a | 77 | V77F | Gtt | Ttt | 4 | 4 | P.1.12 | 0.001936 |
ORF3a | 77 | V77D | gTt | gAt | 3 | 3 | 0.166667 | |
ORF3a | 77 | V77V | gtT | gtG | 3 | 3 | 0.166667 | |
ORF3a | 77 | V77V | gtT | gtC | 3 | 3 | A | 0.001161 |
ORF3a | 77 | V77F | Gtt | Ttt | 3 | 3 | A.2.4 | 0.010101 |
ORF3a | 77 | V77del1 | Gtt | -tt | 3 | 3 | All | 0.000001 |
ORF3a | 77 | V77F | Gtt | Ttt | 3 | 3 | AY.11 | 0.004016 |
ORF3a | 77 | V77F | Gtt | Ttt | 3 | 3 | AY.110 | 0.000338 |
ORF3a | 77 | V77A | gTt | gCt | 3 | 3 | AY.113 | 0.000427 |
ORF3a | 77 | V77F | Gtt | Ttt | 3 | 3 | AY.16.1 | 0.00141 |
ORF3a | 77 | V77A | gTt | gCt | 3 | 3 | AY.20 | 0.000117 |
ORF3a | 77 | V77A | gTt | gCt | 3 | 3 | AY.3 | 0.00003 |
ORF3a | 77 | V77F | Gtt | Ttt | 3 | 3 | AY.47 | 0.000093 |
ORF3a | 77 | V77F | Gtt | Ttt | 3 | 3 | AY.56 | 0.004815 |
ORF3a | 77 | V77F | Gtt | Ttt | 3 | 3 | AY.7.2 | 0.001678 |
ORF3a | 77 | V77I | Gtt | Att | 3 | 3 | AY.94 | 0.001328 |
ORF3a | 77 | V77F | Gtt | Ttt | 3 | 3 | AY.96 | 0.006224 |
ORF3a | 77 | V77V | gtT | gtC | 3 | 3 | B.1.1 | 0.000054 |
ORF3a | 77 | V77F | Gtt | Ttt | 3 | 3 | B.1.1.1 | 0.00098 |
ORF3a | 77 | V77F | Gtt | Ttt | 3 | 3 | B.1.1.169 | 0.054545 |
ORF3a | 77 | V77V | gtT | gtC | 3 | 3 | B.1.1.176 | 0.001318 |
ORF3a | 77 | V77V | gtT | gtC | 3 | 3 | B.1.1.192 | 0.006928 |
ORF3a | 77 | V77F | Gtt | Ttt | 3 | 3 | B.1.1.25 | 0.001706 |
ORF3a | 77 | V77I | Gtt | Att | 3 | 3 | B.1.1.355 | 0.046154 |
ORF3a | 77 | V77F | Gtt | Ttt | 3 | 3 | B.1.177.10 | 0.002634 |
ORF3a | 77 | V77F | Gtt | Ttt | 3 | 3 | B.1.240 | 0.000647 |
ORF3a | 77 | V77I | Gtt | Att | 3 | 3 | B.1.243 | 0.000209 |
ORF3a | 77 | V77F | Gtt | Ttt | 3 | 3 | B.1.351.3 | 0.002629 |
ORF3a | 77 | V77F | Gtt | Ttt | 3 | 3 | B.1.568 | 0.003333 |
ORF3a | 77 | V77F | Gtt | Ttt | 3 | 3 | B.52 | 0.030303 |
ORF3a | 77 | V77F | Gtt | Ttt | 3 | 3 | Q.3 | 0.000435 |
ORF3a | 77 | V77F | Gtt | Ttt | 3 | 3 | Q.8 | 0.000495 |
ORF3a | 77 | V77del | GTT | --- | 3 | 3 | U.3 | 0.011583 |
ORF3a | 77 | V77F | Gtt | Ttt | 2 | 2 | 0.111111 | |
ORF3a | 77 | V77E | gTT | gAG | 2 | 2 | 0.111111 | |
ORF3a | 77 | V77H | GTt | CAt | 2 | 2 | 0.111111 | |
ORF3a | 77 | V77Q | GTT | CAG | 2 | 2 | 0.111111 | |
ORF3a | 77 | V77L | Gtt | Ctt | 2 | 2 | A.2.5 | 0.000998 |
ORF3a | 77 | V77Q | GTT | CAG | 2 | 2 | All | 0 |
ORF3a | 77 | V77S | GTt | TCt | 2 | 2 | All | 0 |
ORF3a | 77 | V77E | gTT | gAG | 2 | 2 | All | 0 |
ORF3a | 77 | V77F | Gtt | Ttt | 2 | 2 | AY.1 | 0.000791 |
ORF3a | 77 | V77L | Gtt | Ctt | 2 | 2 | AY.100 | 0.000092 |
ORF3a | 77 | V77I | Gtt | Att | 2 | 2 | AY.102 | 0.000053 |
ORF3a | 77 | V77F | Gtt | Ttt | 2 | 2 | AY.106 | 0.00067 |
ORF3a | 77 | V77F | Gtt | Ttt | 2 | 2 | AY.116 | 0.000574 |
ORF3a | 77 | V77V | gtT | gtC | 2 | 2 | AY.120 | 0.000074 |
ORF3a | 77 | V77I | Gtt | Att | 2 | 2 | AY.120.2.1 | 0.000997 |
ORF3a | 77 | V77F | Gtt | Ttt | 2 | 2 | AY.13 | 0.000322 |
ORF3a | 77 | V77F | Gtt | Ttt | 2 | 2 | AY.14 | 0.000176 |
ORF3a | 77 | V77I | Gtt | Att | 2 | 2 | AY.20 | 0.000078 |
ORF3a | 77 | V77del | GTT | --- | 2 | 2 | AY.23 | 0.000139 |
ORF3a | 77 | V77I | Gtt | Att | 2 | 2 | AY.26 | 0.000057 |
ORF3a | 77 | V77V | gtT | gtC | 2 | 2 | AY.29 | 0.000032 |
ORF3a | 77 | V77I | Gtt | Att | 2 | 2 | AY.39.1 | 0.000079 |
ORF3a | 77 | V77del | GTT | --- | 2 | 2 | AY.4 | 0.000003 |
ORF3a | 77 | V77V | gtT | gtC | 2 | 2 | AY.4.4 | 0.000818 |
ORF3a | 77 | V77del | GTT | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF3a | 77 | V77I | Gtt | Att | 2 | 2 | AY.5 | 0.000041 |
ORF3a | 77 | V77I | Gtt | Att | 2 | 2 | AY.55 | 0.001835 |
ORF3a | 77 | V77F | Gtt | Ttt | 2 | 2 | AY.55 | 0.001835 |
ORF3a | 77 | V77I | Gtt | Att | 2 | 2 | AY.6 | 0.000082 |
ORF3a | 77 | V77F | Gtt | Ttt | 2 | 2 | AY.60 | 0.001876 |
ORF3a | 77 | V77F | Gtt | Ttt | 2 | 2 | AY.63 | 0.000774 |
ORF3a | 77 | V77F | Gtt | Ttt | 2 | 2 | AY.68 | 0.000547 |
ORF3a | 77 | V77F | Gtt | Ttt | 2 | 2 | AY.69 | 0.000373 |
ORF3a | 77 | V77I | Gtt | Att | 2 | 2 | AY.7.2 | 0.001119 |
ORF3a | 77 | V77I | Gtt | Att | 2 | 2 | AY.75.1 | 0.000361 |
ORF3a | 77 | V77F | Gtt | Ttt | 2 | 2 | AY.75.1 | 0.000361 |
ORF3a | 77 | V77F | Gtt | Ttt | 2 | 2 | AY.89 | 0.009804 |
ORF3a | 77 | V77I | Gtt | Att | 2 | 2 | AY.9.1 | 0.000167 |
ORF3a | 77 | V77I | Gtt | Att | 2 | 2 | AY.98.1 | 0.000097 |
ORF3a | 77 | V77F | Gtt | Ttt | 2 | 2 | B | 0.000256 |
ORF3a | 77 | V77del | GTT | --- | 2 | 2 | B.1 | 0.000018 |
ORF3a | 77 | V77G | gTT | gGG | 1 | 2 | B.1 | 0.000009 |
ORF3a | 77 | V77G | gTt | gGt | 1 | 2 | B.1 | 0.000009 |
ORF3a | 77 | V77I | Gtt | Att | 2 | 2 | B.1.1.1 | 0.000653 |
ORF3a | 77 | V77I | Gtt | Att | 2 | 2 | B.1.1.10 | 0.00223 |
ORF3a | 77 | V77F | Gtt | Ttt | 2 | 2 | B.1.1.214 | 0.000111 |
ORF3a | 77 | V77F | Gtt | Ttt | 2 | 2 | B.1.1.216 | 0.001781 |
ORF3a | 77 | V77I | Gtt | Att | 2 | 2 | B.1.1.28 | 0.000622 |
ORF3a | 77 | V77I | Gtt | Att | 2 | 2 | B.1.1.311 | 0.000716 |
ORF3a | 77 | V77F | Gtt | Ttt | 2 | 2 | B.1.1.372 | 0.001377 |
ORF3a | 77 | V77G | gTt | gGt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF3a | 77 | V77F | Gtt | Ttt | 2 | 2 | B.1.177.7 | 0.00033 |
ORF3a | 77 | V77F | Gtt | Ttt | 2 | 2 | B.1.177.86 | 0.000367 |
ORF3a | 77 | V77V | gtT | gtC | 2 | 2 | B.1.22 | 0.002635 |
ORF3a | 77 | V77F | Gtt | Ttt | 2 | 2 | B.1.22 | 0.002635 |
ORF3a | 77 | V77I | Gtt | Att | 2 | 2 | B.1.232 | 0.001075 |
ORF3a | 77 | V77F | Gtt | Ttt | 2 | 2 | B.1.234 | 0.000264 |
ORF3a | 77 | V77I | Gtt | Att | 2 | 2 | B.1.258 | 0.000133 |
ORF3a | 77 | V77F | Gtt | Ttt | 2 | 2 | B.1.36.1 | 0.002281 |
ORF3a | 77 | V77I | Gtt | Att | 2 | 2 | B.1.36.38 | 0.003284 |
ORF3a | 77 | V77V | gtT | gtC | 1 | 2 | B.1.396 | 0.000706 |
ORF3a | 77 | V77V | gtT | gtA | 1 | 2 | B.1.396 | 0.000706 |
ORF3a | 77 | V77V | gtT | gtG | 2 | 2 | B.1.427 | 0.000101 |
ORF3a | 77 | V77F | Gtt | Ttt | 2 | 2 | B.1.507 | 0.022472 |
ORF3a | 77 | V77F | Gtt | Ttt | 2 | 2 | B.1.527 | 0.007407 |
ORF3a | 77 | V77F | Gtt | Ttt | 2 | 2 | B.1.540 | 0.019417 |
ORF3a | 77 | V77F | Gtt | Ttt | 2 | 2 | B.1.595.1 | 0.011696 |
ORF3a | 77 | V77F | Gtt | Ttt | 2 | 2 | B.1.597 | 0.009259 |
ORF3a | 77 | V77del | GTT | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF3a | 77 | V77F | Gtt | Ttt | 2 | 2 | C.28 | 0.08 |
ORF3a | 77 | V77V | gtT | gtC | 2 | 2 | C.37 | 0.000232 |
ORF3a | 77 | V77I | Gtt | Att | 2 | 2 | P.1 | 0.000032 |
ORF3a | 77 | V77V | gtT | gtC | 2 | 2 | Q.8 | 0.00033 |
ORF3a | 77 | V77S | GTt | TCt | 2 | 2 | R.1 | 0.00018 |
ORF3a | 77 | V77G | gTt | gGt | 1 | 1 | 0.055556 | |
ORF3a | 77 | V77Y | GTt | TAt | 1 | 1 | 0.055556 | |
ORF3a | 77 | V77C | GTt | TGt | 1 | 1 | 0.055556 | |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | A | 0.000387 |
ORF3a | 77 | V77A | gTt | gCt | 1 | 1 | A.27 | 0.001656 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | AA.6 | 0.016129 |
ORF3a | 77 | V77del2 | GTt | --t | 1 | 1 | AD.2 | 0.000219 |
ORF3a | 77 | V77D | gTt | gAt | 1 | 1 | AD.2 | 0.000219 |
ORF3a | 77 | V77del | GTT | --- | 1 | 1 | AH.3 | 0.003802 |
ORF3a | 77 | V77Y | GTt | TAt | 1 | 1 | All | 0 |
ORF3a | 77 | V77C | GTt | TGt | 1 | 1 | All | 0 |
ORF3a | 77 | V77A | gTt | gCt | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | AY.101 | 0.00049 |
ORF3a | 77 | V77V | gtT | gtG | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 77 | V77A | gTt | gCt | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 77 | V77A | gTt | gCt | 1 | 1 | AY.103 | 0.000006 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | AY.104 | 0.001984 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | AY.105 | 0.000643 |
ORF3a | 77 | V77I | Gtt | Att | 1 | 1 | AY.107 | 0.000466 |
ORF3a | 77 | V77V | gtT | gtC | 1 | 1 | AY.107 | 0.000466 |
ORF3a | 77 | V77I | Gtt | Att | 1 | 1 | AY.108 | 0.001103 |
ORF3a | 77 | V77del | GTT | --- | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 77 | V77del1 | Gtt | -tt | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 77 | V77V | gtT | gtC | 1 | 1 | AY.12 | 0.000316 |
ORF3a | 77 | V77I | Gtt | Att | 1 | 1 | AY.120.1 | 0.000321 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | AY.19 | 0.00114 |
ORF3a | 77 | V77A | gTt | gCt | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 77 | V77I | Gtt | Att | 1 | 1 | AY.24 | 0.000431 |
ORF3a | 77 | V77del | GTT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 77 | V77A | gTt | gCt | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 77 | V77V | gtT | gtA | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 77 | V77A | gTt | gCt | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 77 | V77I | Gtt | Att | 1 | 1 | AY.27 | 0.000065 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | AY.27 | 0.000065 |
ORF3a | 77 | V77L | Gtt | Ctt | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 77 | V77del2 | GTT | --N | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 77 | V77I | Gtt | Att | 1 | 1 | AY.3.1 | 0.000085 |
ORF3a | 77 | V77V | gtT | gtC | 1 | 1 | AY.32 | 0.000532 |
ORF3a | 77 | V77del | GTT | --- | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | AY.35 | 0.000233 |
ORF3a | 77 | V77L | Gtt | Ctt | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 77 | V77del | GTT | --- | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 77 | V77A | gTt | gCt | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 77 | V77G | gTt | gGt | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 77 | V77I | Gtt | Att | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 77 | V77del2 | GTt | --t | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF3a | 77 | V77L | Gtt | Ctt | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 77 | V77V | gtT | gtC | 1 | 1 | AY.40 | 0.000964 |
ORF3a | 77 | V77V | gtT | gtC | 1 | 1 | AY.41 | 0.000294 |
ORF3a | 77 | V77A | gTt | gCt | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 77 | V77del | GTT | --- | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 77 | V77I | Gtt | Att | 1 | 1 | AY.45 | 0.000122 |
ORF3a | 77 | V77I | Gtt | Att | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 77 | V77I | Gtt | Att | 1 | 1 | AY.46.2 | 0.000635 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | AY.46.4 | 0.000165 |
ORF3a | 77 | V77V | gtT | gtC | 1 | 1 | AY.46.4 | 0.000165 |
ORF3a | 77 | V77V | gtT | gtG | 1 | 1 | AY.47 | 0.000031 |
ORF3a | 77 | V77I | Gtt | Att | 1 | 1 | AY.49 | 0.003195 |
ORF3a | 77 | V77L | Gtt | Ctt | 1 | 1 | AY.5 | 0.000021 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | AY.5.3 | 0.000337 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | AY.51 | 0.000909 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | AY.52 | 0.000814 |
ORF3a | 77 | V77V | gtT | gtC | 1 | 1 | AY.54 | 0.000095 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | AY.58 | 0.000907 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 77 | V77A | gTt | gCt | 1 | 1 | AY.63 | 0.000387 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | AY.64 | 0.000595 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | AY.66 | 0.00107 |
ORF3a | 77 | V77G | gTt | gGt | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | AY.70 | 0.000209 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | AY.71 | 0.000475 |
ORF3a | 77 | V77I | Gtt | Att | 1 | 1 | AY.72 | 0.001361 |
ORF3a | 77 | V77A | gTt | gCt | 1 | 1 | AY.74 | 0.000116 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | AY.74 | 0.000116 |
ORF3a | 77 | V77L | Gtt | Ctt | 1 | 1 | AY.75 | 0.000056 |
ORF3a | 77 | V77I | Gtt | Att | 1 | 1 | AY.75 | 0.000056 |
ORF3a | 77 | V77I | Gtt | Att | 1 | 1 | AY.77 | 0.001127 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | AY.78 | 0.001541 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | AY.85 | 0.000427 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | AY.88 | 0.000884 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | AY.9 | 0.000068 |
ORF3a | 77 | V77V | gtT | gtC | 1 | 1 | AY.9 | 0.000068 |
ORF3a | 77 | V77A | gTt | gCt | 1 | 1 | AY.9.1 | 0.000084 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | AY.91 | 0.00073 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | AY.92 | 0.000287 |
ORF3a | 77 | V77A | gTt | gCt | 1 | 1 | AY.92 | 0.000287 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | AY.93 | 0.000273 |
ORF3a | 77 | V77I | Gtt | Att | 1 | 1 | AY.95 | 0.000761 |
ORF3a | 77 | V77I | Gtt | Att | 1 | 1 | AY.98 | 0.000079 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | AY.99.1 | 0.001553 |
ORF3a | 77 | V77del1 | Gtt | -tt | 1 | 1 | B.1 | 0.000009 |
ORF3a | 77 | V77H | GTT | CAC | 1 | 1 | B.1 | 0.000009 |
ORF3a | 77 | V77H | GTT | CAC | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 77 | V77L | Gtt | Ctt | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 77 | V77A | gTt | gCt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF3a | 77 | V77A | gTt | gCt | 1 | 1 | B.1.1.134 | 0.011364 |
ORF3a | 77 | V77L | Gtt | Ctt | 1 | 1 | B.1.1.170 | 0.001247 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.1.189 | 0.001513 |
ORF3a | 77 | V77I | Gtt | Att | 1 | 1 | B.1.1.196 | 0.005714 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.1.198 | 0.001468 |
ORF3a | 77 | V77A | gTt | gCt | 1 | 1 | B.1.1.216 | 0.00089 |
ORF3a | 77 | V77V | gtT | gtC | 1 | 1 | B.1.1.220 | 0.001859 |
ORF3a | 77 | V77del | GTT | --- | 1 | 1 | B.1.1.236 | 0.006897 |
ORF3a | 77 | V77I | Gtt | Att | 1 | 1 | B.1.1.261 | 0.008621 |
ORF3a | 77 | V77I | Gtt | Att | 1 | 1 | B.1.1.262 | 0.015152 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.1.284 | 0.000107 |
ORF3a | 77 | V77A | gTt | gCt | 1 | 1 | B.1.1.284 | 0.000107 |
ORF3a | 77 | V77A | gTt | gCt | 1 | 1 | B.1.1.291 | 0.000742 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.1.304 | 0.002809 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.1.307 | 0.002532 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.1.316 | 0.000925 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.1.318 | 0.000302 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF3a | 77 | V77A | gTt | gCt | 1 | 1 | B.1.1.348 | 0.000796 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.1.375 | 0.011905 |
ORF3a | 77 | V77A | gTt | gCt | 1 | 1 | B.1.1.398 | 0.003226 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.1.403 | 0.025641 |
ORF3a | 77 | V77del | GTT | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.1.420 | 0.001006 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.1.432 | 0.001266 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.1.448 | 0.002033 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.1.46 | 0.004367 |
ORF3a | 77 | V77V | gtT | gtC | 1 | 1 | B.1.1.50 | 0.000679 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.1.53 | 0.013699 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.1.54 | 0.003021 |
ORF3a | 77 | V77del2 | gTT | g-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 77 | V77del1 | Gtt | -tt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.110.3 | 0.000718 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.111 | 0.001175 |
ORF3a | 77 | V77G | gTt | gGt | 1 | 1 | B.1.13 | 0.002375 |
ORF3a | 77 | V77V | gtT | gtC | 1 | 1 | B.1.160.16 | 0.000929 |
ORF3a | 77 | V77del2 | GTt | --t | 1 | 1 | B.1.161 | 0.017241 |
ORF3a | 77 | V77A | gTt | gCt | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 77 | V77I | Gtt | Att | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 77 | V77L | Gtt | Ctt | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 77 | V77del | GTT | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF3a | 77 | V77A | gTt | gCt | 1 | 1 | B.1.177.31 | 0.011494 |
ORF3a | 77 | V77G | gTt | gGt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.177.75 | 0.001041 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.178 | 0.02381 |
ORF3a | 77 | V77I | Gtt | Att | 1 | 1 | B.1.195 | 0.005025 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.214 | 0.003663 |
ORF3a | 77 | V77I | Gtt | Att | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 77 | V77V | gtT | gtC | 1 | 1 | B.1.232 | 0.000537 |
ORF3a | 77 | V77A | gTt | gCt | 1 | 1 | B.1.232 | 0.000537 |
ORF3a | 77 | V77V | gtT | gtC | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 77 | V77L | Gtt | Ctt | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 77 | V77V | gtT | gtC | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.311 | 0.000275 |
ORF3a | 77 | V77A | gTt | gCt | 1 | 1 | B.1.315 | 0.006061 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.320 | 0.001245 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.349 | 0.000715 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.36.22 | 0.001208 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.36.24 | 0.006173 |
ORF3a | 77 | V77A | gTt | gCt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.36.8 | 0.001 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.36.9 | 0.003215 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.380 | 0.006623 |
ORF3a | 77 | V77L | Gtt | Ctt | 1 | 1 | B.1.389 | 0.001002 |
ORF3a | 77 | V77L | Gtt | Ctt | 1 | 1 | B.1.391 | 0.001127 |
ORF3a | 77 | V77del | GTT | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF3a | 77 | V77V | gtT | gtC | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.466.1 | 0.007194 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.471 | 0.002732 |
ORF3a | 77 | V77A | gTt | gCt | 1 | 1 | B.1.517 | 0.000427 |
ORF3a | 77 | V77V | gtT | gtC | 1 | 1 | B.1.517 | 0.000427 |
ORF3a | 77 | V77L | Gtt | Ctt | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 77 | V77I | Gtt | Att | 1 | 1 | B.1.538 | 0.008065 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.576 | 0.000907 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.581 | 0.009434 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.582 | 0.000491 |
ORF3a | 77 | V77del | GTT | --- | 1 | 1 | B.1.585 | 0.027778 |
ORF3a | 77 | V77V | gtT | gtC | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 77 | V77I | Gtt | Att | 1 | 1 | B.1.609 | 0.000479 |
ORF3a | 77 | V77A | gTt | gCt | 1 | 1 | B.1.609 | 0.000479 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 77 | V77I | Gtt | Att | 1 | 1 | B.1.621 | 0.000089 |
ORF3a | 77 | V77V | gtT | gtA | 1 | 1 | B.1.621 | 0.000089 |
ORF3a | 77 | V77del | GTT | --- | 1 | 1 | B.1.627 | 0.00202 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.628 | 0.000352 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.637 | 0.000073 |
ORF3a | 77 | V77del | GTT | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.1.8 | 0.001972 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.40 | 0.000364 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | B.6 | 0.00091 |
ORF3a | 77 | V77I | Gtt | Att | 1 | 1 | C.30 | 0.001727 |
ORF3a | 77 | V77V | gtT | gtC | 1 | 1 | D.2 | 0.000075 |
ORF3a | 77 | V77G | gTt | gGt | 1 | 1 | D.2 | 0.000075 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | D.3 | 0.005917 |
ORF3a | 77 | V77V | gtT | gtA | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 77 | V77del | GTT | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | P.6 | 0.003145 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | Q.1 | 0.000126 |
ORF3a | 77 | V77F | Gtt | Ttt | 1 | 1 | Q.4 | 0.000455 |
ORF3a | 77 | V77I | Gtt | Att | 1 | 1 | Q.7 | 0.001111 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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