CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 72 | A72S | nonsyn | Gca | Tca | 6068 | 6063 | 0.999176 | 25606-25608 | |
ORF3a | 72 | A72S | nonsyn | GCA | AGC | 6068 | 3 | 0.000494397 | 25606-25608 | |
ORF3a | 72 | A72S | nonsyn | GcA | TcT | 6068 | 2 | 0.000329598 | 25606-25608 | |
ORF3a | 72 | A72T | nonsyn | Gca | Aca | 1351 | 1346 | 0.996299 | 25606-25608 | |
ORF3a | 72 | A72T | nonsyn | GcA | AcC | 1351 | 5 | 0.00370096 | 25606-25608 | |
ORF3a | 72 | A72V | nonsyn | gCa | gTa | 377 | 375 | 0.994695 | 25606-25608 | |
ORF3a | 72 | A72V | nonsyn | gCA | gTT | 377 | 2 | 0.00530504 | 25606-25608 | |
ORF3a | 72 | A72P | nonsyn | Gca | Cca | 217 | 216 | 0.995392 | 25606-25608 | |
ORF3a | 72 | A72P | nonsyn | GcA | CcC | 217 | 1 | 0.00460829 | 25606-25608 | |
ORF3a | 72 | A72A | syn | gcA | gcG | 102 | 51 | 0.5 | 25606-25608 | |
ORF3a | 72 | A72A | syn | gcA | gcT | 102 | 28 | 0.27451 | 25606-25608 | |
ORF3a | 72 | A72A | syn | gcA | gcC | 102 | 23 | 0.22549 | 25606-25608 | |
ORF3a | 72 | A72del | del | GCA | --- | 56 | 56 | 1 | 25606-25608 | |
ORF3a | 72 | A72E | nonsyn | gCa | gAa | 12 | 11 | 0.916667 | 25606-25608 | |
ORF3a | 72 | A72E | nonsyn | gCA | gAG | 12 | 1 | 0.0833333 | 25606-25608 | |
ORF3a | 72 | A72G | nonsyn | gCa | gGa | 10 | 8 | 0.8 | 25606-25608 | |
ORF3a | 72 | A72G | nonsyn | gCA | gGC | 10 | 2 | 0.2 | 25606-25608 | |
ORF3a | 72 | A72D | nonsyn | gCA | gAC | 6 | 6 | 1 | 25606-25608 | |
ORF3a | 72 | A72L | nonsyn | GCa | TTa | 4 | 3 | 0.75 | 25606-25608 | |
ORF3a | 72 | A72del1 | del | gcA | gc- | 4 | 2 | 0.5 | 25606-25608 | |
ORF3a | 72 | A72L | nonsyn | GCA | TTG | 4 | 1 | 0.25 | 25606-25608 | |
ORF3a | 72 | A72del1 | del | Gca | -ca | 4 | 1 | 0.25 | 25606-25608 | |
ORF3a | 72 | A72del1 | del | GcA | -cC | 4 | 1 | 0.25 | 25606-25608 | |
ORF3a | 72 | A72K | nonsyn | GCa | AAa | 2 | 2 | 1 | 25606-25608 | |
ORF3a | 72 | A72Q | nonsyn | GCa | CAa | 2 | 2 | 1 | 25606-25608 | |
ORF3a | 72 | A72R | nonsyn | GCa | AGa | 2 | 2 | 1 | 25606-25608 | |
ORF3a | 72 | A72F | nonsyn | GCA | TTT | 2 | 2 | 1 | 25606-25608 | |
ORF3a | 72 | A72H | nonsyn | GCA | CAC | 1 | 1 | 1 | 25606-25608 | |
ORF3a | 72 | A72N | nonsyn | GCA | AAC | 1 | 1 | 1 | 25606-25608 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 72 | A72S | Gca | Tca | 6063 | 6068 | All | 0.00116 |
ORF3a | 72 | A72S | GCA | AGC | 3 | 6068 | All | 0.000001 |
ORF3a | 72 | A72S | GcA | TcT | 2 | 6068 | All | 0 |
ORF3a | 72 | A72S | Gca | Tca | 2765 | 2765 | B.1.258 | 0.184002 |
ORF3a | 72 | A72T | Gca | Aca | 1346 | 1351 | All | 0.000257 |
ORF3a | 72 | A72T | GcA | AcC | 5 | 1351 | All | 0.000001 |
ORF3a | 72 | A72S | Gca | Tca | 563 | 563 | B.1.1.7 | 0.000504 |
ORF3a | 72 | A72S | Gca | Tca | 445 | 445 | B.1.351 | 0.013228 |
ORF3a | 72 | A72T | Gca | Aca | 441 | 441 | B.1.1.7 | 0.000395 |
ORF3a | 72 | A72V | gCa | gTa | 375 | 377 | All | 0.000072 |
ORF3a | 72 | A72V | gCA | gTT | 2 | 377 | All | 0 |
ORF3a | 72 | A72T | Gca | Aca | 332 | 332 | AY.44 | 0.002021 |
ORF3a | 72 | A72S | Gca | Tca | 329 | 329 | B.1.160.14 | 0.697034 |
ORF3a | 72 | A72S | Gca | Tca | 259 | 259 | B.1 | 0.002372 |
ORF3a | 72 | A72S | Gca | Tca | 245 | 245 | AY.4 | 0.000381 |
ORF3a | 72 | A72P | Gca | Cca | 216 | 217 | All | 0.000041 |
ORF3a | 72 | A72P | GcA | CcC | 1 | 217 | All | 0 |
ORF3a | 72 | A72P | Gca | Cca | 136 | 136 | AY.4 | 0.000212 |
ORF3a | 72 | A72S | Gca | Tca | 124 | 124 | B.1.617.2 | 0.000467 |
ORF3a | 72 | A72S | Gca | Tca | 118 | 118 | B.1.429 | 0.002776 |
ORF3a | 72 | A72A | gcA | gcG | 51 | 102 | All | 0.00001 |
ORF3a | 72 | A72A | gcA | gcT | 28 | 102 | All | 0.000005 |
ORF3a | 72 | A72A | gcA | gcC | 23 | 102 | All | 0.000004 |
ORF3a | 72 | A72T | Gca | Aca | 102 | 102 | AY.4 | 0.000159 |
ORF3a | 72 | A72S | Gca | Tca | 90 | 90 | B.1.151 | 1 |
ORF3a | 72 | A72V | gCa | gTa | 80 | 80 | B.1.1.7 | 0.000072 |
ORF3a | 72 | A72S | Gca | Tca | 73 | 73 | AY.43 | 0.000323 |
ORF3a | 72 | A72S | Gca | Tca | 70 | 70 | AY.103 | 0.000435 |
ORF3a | 72 | A72S | Gca | Tca | 68 | 68 | AY.113 | 0.009682 |
ORF3a | 72 | A72T | Gca | Aca | 68 | 68 | B.1.617.2 | 0.000256 |
ORF3a | 72 | A72S | Gca | Tca | 64 | 64 | B.1.177 | 0.000843 |
ORF3a | 72 | A72S | Gca | Tca | 57 | 57 | B.1.1 | 0.001034 |
ORF3a | 72 | A72del | GCA | --- | 56 | 56 | All | 0.000011 |
ORF3a | 72 | A72T | Gca | Aca | 54 | 54 | B.1.177.86 | 0.009906 |
ORF3a | 72 | A72S | Gca | Tca | 51 | 51 | P.1.14 | 0.002438 |
ORF3a | 72 | A72S | Gca | Tca | 50 | 50 | AY.44 | 0.000304 |
ORF3a | 72 | A72T | Gca | Aca | 42 | 42 | B.1.429 | 0.000988 |
ORF3a | 72 | A72S | Gca | Tca | 40 | 40 | B.1.160 | 0.001248 |
ORF3a | 72 | A72V | gCa | gTa | 37 | 37 | P.1.14 | 0.001769 |
ORF3a | 72 | A72V | gCa | gTa | 35 | 35 | AY.25 | 0.000211 |
ORF3a | 72 | A72T | Gca | Aca | 32 | 32 | AY.102 | 0.000848 |
ORF3a | 72 | A72S | Gca | Tca | 31 | 31 | B | 0.003962 |
ORF3a | 72 | A72S | Gca | Tca | 30 | 30 | AY.4.2 | 0.000651 |
ORF3a | 72 | A72S | Gca | Tca | 29 | 29 | AY.39 | 0.000717 |
ORF3a | 72 | A72S | Gca | Tca | 29 | 29 | B.1.2 | 0.000255 |
ORF3a | 72 | A72S | Gca | Tca | 27 | 27 | AY.102 | 0.000716 |
ORF3a | 72 | A72T | Gca | Aca | 27 | 27 | B.1.2 | 0.000238 |
ORF3a | 72 | A72V | gCa | gTa | 26 | 26 | AY.26 | 0.000736 |
ORF3a | 72 | A72P | Gca | Cca | 22 | 22 | AY.113 | 0.003133 |
ORF3a | 72 | A72T | Gca | Aca | 21 | 21 | AY.25 | 0.000126 |
ORF3a | 72 | A72S | Gca | Tca | 20 | 20 | P.1 | 0.000315 |
ORF3a | 72 | A72S | Gca | Tca | 19 | 19 | B.1.427 | 0.000959 |
ORF3a | 72 | A72S | Gca | Tca | 18 | 18 | B.1.1.333 | 0.019376 |
ORF3a | 72 | A72S | Gca | Tca | 16 | 16 | AY.26 | 0.000453 |
ORF3a | 72 | A72V | gCa | gTa | 16 | 16 | B.1 | 0.000147 |
ORF3a | 72 | A72S | Gca | Tca | 15 | 15 | AY.25 | 0.00009 |
ORF3a | 72 | A72T | Gca | Aca | 15 | 15 | AY.43 | 0.000066 |
ORF3a | 72 | A72S | Gca | Tca | 15 | 15 | B.1.617.1 | 0.001934 |
ORF3a | 72 | A72S | Gca | Tca | 14 | 14 | AY.29 | 0.000221 |
ORF3a | 72 | A72V | gCa | gTa | 14 | 14 | B.1.617.2 | 0.000053 |
ORF3a | 72 | A72S | Gca | Tca | 13 | 13 | AY.5 | 0.000268 |
ORF3a | 72 | A72V | gCa | gTa | 13 | 13 | AY.59 | 0.006886 |
ORF3a | 72 | A72V | gCa | gTa | 13 | 13 | B.1.429 | 0.000306 |
ORF3a | 72 | A72T | Gca | Aca | 13 | 13 | P.1 | 0.000205 |
ORF3a | 72 | A72E | gCa | gAa | 11 | 12 | All | 0.000002 |
ORF3a | 72 | A72E | gCA | gAG | 1 | 12 | All | 0 |
ORF3a | 72 | A72S | Gca | Tca | 12 | 12 | AY.119 | 0.000424 |
ORF3a | 72 | A72A | gcA | gcG | 12 | 12 | AY.25 | 0.000072 |
ORF3a | 72 | A72A | gcA | gcG | 9 | 12 | B.1.1.7 | 0.000008 |
ORF3a | 72 | A72A | gcA | gcT | 3 | 12 | B.1.1.7 | 0.000003 |
ORF3a | 72 | A72S | Gca | Tca | 11 | 11 | A | 0.004257 |
ORF3a | 72 | A72T | Gca | Aca | 11 | 11 | AY.6 | 0.000452 |
ORF3a | 72 | A72T | Gca | Aca | 11 | 11 | B.1.1 | 0.0002 |
ORF3a | 72 | A72del | GCA | --- | 11 | 11 | B.1.1.7 | 0.00001 |
ORF3a | 72 | A72G | gCa | gGa | 8 | 10 | All | 0.000002 |
ORF3a | 72 | A72G | gCA | gGC | 2 | 10 | All | 0 |
ORF3a | 72 | A72V | gCa | gTa | 10 | 10 | AU.2 | 0.024213 |
ORF3a | 72 | A72S | Gca | Tca | 10 | 10 | AY.16 | 0.003797 |
ORF3a | 72 | A72S | Gca | Tca | 10 | 10 | AY.3 | 0.000099 |
ORF3a | 72 | A72P | Gca | Cca | 10 | 10 | AY.43 | 0.000044 |
ORF3a | 72 | A72T | Gca | Aca | 10 | 10 | B.1.1.50 | 0.006789 |
ORF3a | 72 | A72P | Gca | Cca | 10 | 10 | B.1.1.7 | 0.000009 |
ORF3a | 72 | A72V | gCa | gTa | 10 | 10 | B.1.2 | 0.000088 |
ORF3a | 72 | A72S | Gca | Tca | 10 | 10 | B.1.466.2 | 0.003912 |
ORF3a | 72 | A72T | Gca | Aca | 9 | 9 | AY.54 | 0.000858 |
ORF3a | 72 | A72V | gCa | gTa | 9 | 9 | AY.99.2 | 0.000829 |
ORF3a | 72 | A72S | Gca | Tca | 8 | 8 | AY.120 | 0.000297 |
ORF3a | 72 | A72S | Gca | Tca | 8 | 8 | AY.23 | 0.000558 |
ORF3a | 72 | A72V | gCa | gTa | 8 | 8 | AY.39.1 | 0.000317 |
ORF3a | 72 | A72A | gcA | gcT | 8 | 8 | B.1.596 | 0.000697 |
ORF3a | 72 | A72P | Gca | Cca | 8 | 8 | P.1 | 0.000126 |
ORF3a | 72 | A72T | Gca | Aca | 4 | 7 | 0.222222 | |
ORF3a | 72 | A72T | GcA | AcC | 3 | 7 | 0.166667 | |
ORF3a | 72 | A72T | Gca | Aca | 7 | 7 | AY.103 | 0.000043 |
ORF3a | 72 | A72T | Gca | Aca | 7 | 7 | AY.3 | 0.00007 |
ORF3a | 72 | A72S | Gca | Tca | 7 | 7 | AY.41 | 0.002058 |
ORF3a | 72 | A72T | Gca | Aca | 6 | 7 | B.1 | 0.000055 |
ORF3a | 72 | A72T | GcA | AcC | 1 | 7 | B.1 | 0.000009 |
ORF3a | 72 | A72T | Gca | Aca | 7 | 7 | B.1.1.218 | 0.053846 |
ORF3a | 72 | A72A | gcA | gcG | 6 | 7 | B.1.177 | 0.000079 |
ORF3a | 72 | A72A | gcA | gcT | 1 | 7 | B.1.177 | 0.000013 |
ORF3a | 72 | A72S | GCA | AGC | 2 | 6 | 0.111111 | |
ORF3a | 72 | A72S | GcA | TcT | 2 | 6 | 0.111111 | |
ORF3a | 72 | A72S | Gca | Tca | 2 | 6 | 0.111111 | |
ORF3a | 72 | A72D | gCA | gAC | 6 | 6 | All | 0.000001 |
ORF3a | 72 | A72V | gCa | gTa | 6 | 6 | AY.14 | 0.000528 |
ORF3a | 72 | A72S | Gca | Tca | 6 | 6 | AY.20 | 0.000233 |
ORF3a | 72 | A72V | gCa | gTa | 6 | 6 | AY.43 | 0.000027 |
ORF3a | 72 | A72T | Gca | Aca | 6 | 6 | AY.47 | 0.000187 |
ORF3a | 72 | A72S | Gca | Tca | 6 | 6 | AY.98 | 0.000474 |
ORF3a | 72 | A72T | Gca | Aca | 6 | 6 | B.1.1.28 | 0.001867 |
ORF3a | 72 | A72T | Gca | Aca | 6 | 6 | B.1.1.306 | 0.00263 |
ORF3a | 72 | A72S | Gca | Tca | 6 | 6 | C.9 | 0.181818 |
ORF3a | 72 | A72A | gcA | gcC | 3 | 5 | 0.166667 | |
ORF3a | 72 | A72A | gcA | gcT | 2 | 5 | 0.111111 | |
ORF3a | 72 | A72A | gcA | gcG | 5 | 5 | A.23.1 | 0.003521 |
ORF3a | 72 | A72V | gCa | gTa | 5 | 5 | AY.103 | 0.000031 |
ORF3a | 72 | A72S | Gca | Tca | 5 | 5 | AY.14 | 0.00044 |
ORF3a | 72 | A72P | Gca | Cca | 5 | 5 | AY.25 | 0.00003 |
ORF3a | 72 | A72S | Gca | Tca | 5 | 5 | AY.34 | 0.000485 |
ORF3a | 72 | A72S | Gca | Tca | 5 | 5 | AY.36 | 0.000741 |
ORF3a | 72 | A72V | gCa | gTa | 5 | 5 | AY.4 | 0.000008 |
ORF3a | 72 | A72A | gcA | gcC | 5 | 5 | AY.60 | 0.00469 |
ORF3a | 72 | A72T | Gca | Aca | 5 | 5 | AY.61 | 0.000524 |
ORF3a | 72 | A72P | Gca | Cca | 4 | 5 | B.1 | 0.000037 |
ORF3a | 72 | A72P | GcA | CcC | 1 | 5 | B.1 | 0.000009 |
ORF3a | 72 | A72del | GCA | --- | 5 | 5 | B.1.177 | 0.000066 |
ORF3a | 72 | A72S | Gca | Tca | 5 | 5 | B.1.526 | 0.000118 |
ORF3a | 72 | A72A | gcA | gcG | 3 | 5 | B.1.617.2 | 0.000011 |
ORF3a | 72 | A72A | gcA | gcC | 1 | 5 | B.1.617.2 | 0.000004 |
ORF3a | 72 | A72A | gcA | gcT | 1 | 5 | B.1.617.2 | 0.000004 |
ORF3a | 72 | A72S | Gca | Tca | 5 | 5 | P.1.15 | 0.001162 |
ORF3a | 72 | A72G | gCa | gGa | 2 | 4 | 0.111111 | |
ORF3a | 72 | A72V | gCa | gTa | 2 | 4 | 0.111111 | |
ORF3a | 72 | A72V | gCA | gTT | 2 | 4 | 0.111111 | |
ORF3a | 72 | A72G | gCA | gGC | 2 | 4 | 0.111111 | |
ORF3a | 72 | A72L | GCa | TTa | 3 | 4 | All | 0.000001 |
ORF3a | 72 | A72del1 | gcA | gc- | 2 | 4 | All | 0 |
ORF3a | 72 | A72del1 | GcA | -cC | 1 | 4 | All | 0 |
ORF3a | 72 | A72del1 | Gca | -ca | 1 | 4 | All | 0 |
ORF3a | 72 | A72L | GCA | TTG | 1 | 4 | All | 0 |
ORF3a | 72 | A72V | gCa | gTa | 4 | 4 | AY.119 | 0.000141 |
ORF3a | 72 | A72T | Gca | Aca | 4 | 4 | AY.23 | 0.000279 |
ORF3a | 72 | A72T | Gca | Aca | 4 | 4 | AY.29 | 0.000063 |
ORF3a | 72 | A72del | GCA | --- | 4 | 4 | AY.4 | 0.000006 |
ORF3a | 72 | A72S | Gca | Tca | 4 | 4 | AY.45 | 0.000487 |
ORF3a | 72 | A72A | gcA | gcG | 4 | 4 | AY.46.4 | 0.000658 |
ORF3a | 72 | A72S | Gca | Tca | 4 | 4 | AY.6 | 0.000165 |
ORF3a | 72 | A72P | Gca | Cca | 4 | 4 | B | 0.000511 |
ORF3a | 72 | A72V | gCa | gTa | 4 | 4 | B.1.1 | 0.000073 |
ORF3a | 72 | A72S | Gca | Tca | 4 | 4 | B.1.1.397 | 0.009009 |
ORF3a | 72 | A72T | Gca | Aca | 4 | 4 | B.1.160 | 0.000125 |
ORF3a | 72 | A72S | Gca | Tca | 4 | 4 | B.1.221 | 0.000284 |
ORF3a | 72 | A72S | Gca | Tca | 4 | 4 | B.1.243 | 0.000278 |
ORF3a | 72 | A72S | Gca | Tca | 4 | 4 | B.1.258.21 | 0.031008 |
ORF3a | 72 | A72S | Gca | Tca | 4 | 4 | B.1.36 | 0.000584 |
ORF3a | 72 | A72T | Gca | Aca | 4 | 4 | B.1.427 | 0.000202 |
ORF3a | 72 | A72S | Gca | Tca | 4 | 4 | B.1.459 | 0.016327 |
ORF3a | 72 | A72S | Gca | Tca | 4 | 4 | B.1.469 | 0.01444 |
ORF3a | 72 | A72T | Gca | Aca | 4 | 4 | B.1.596 | 0.000349 |
ORF3a | 72 | A72S | Gca | Tca | 4 | 4 | B.1.609 | 0.001918 |
ORF3a | 72 | A72P | Gca | Cca | 4 | 4 | B.1.617.2 | 0.000015 |
ORF3a | 72 | A72T | Gca | Aca | 4 | 4 | P.1.6 | 0.007782 |
ORF3a | 72 | A72T | Gca | Aca | 4 | 4 | P.1.7 | 0.001277 |
ORF3a | 72 | A72S | Gca | Tca | 4 | 4 | P.3 | 0.00638 |
ORF3a | 72 | A72S | Gca | Tca | 3 | 3 | AY.108 | 0.003308 |
ORF3a | 72 | A72A | gcA | gcC | 3 | 3 | AY.21 | 0.005693 |
ORF3a | 72 | A72V | gCa | gTa | 3 | 3 | AY.23 | 0.000209 |
ORF3a | 72 | A72S | Gca | Tca | 3 | 3 | AY.27 | 0.000194 |
ORF3a | 72 | A72S | Gca | Tca | 3 | 3 | AY.33 | 0.0002 |
ORF3a | 72 | A72A | gcA | gcT | 2 | 3 | AY.43 | 0.000009 |
ORF3a | 72 | A72A | gcA | gcG | 1 | 3 | AY.43 | 0.000004 |
ORF3a | 72 | A72S | Gca | Tca | 3 | 3 | AY.46.5 | 0.000595 |
ORF3a | 72 | A72S | Gca | Tca | 3 | 3 | AY.5.4 | 0.00083 |
ORF3a | 72 | A72V | gCa | gTa | 3 | 3 | AY.6 | 0.000123 |
ORF3a | 72 | A72S | Gca | Tca | 3 | 3 | AY.75 | 0.000168 |
ORF3a | 72 | A72S | Gca | Tca | 3 | 3 | AY.78 | 0.004622 |
ORF3a | 72 | A72A | gcA | gcT | 3 | 3 | AY.9.1 | 0.000251 |
ORF3a | 72 | A72S | Gca | Tca | 3 | 3 | AY.9.2 | 0.00011 |
ORF3a | 72 | A72E | gCa | gAa | 3 | 3 | B.1 | 0.000027 |
ORF3a | 72 | A72del | GCA | --- | 3 | 3 | B.1 | 0.000027 |
ORF3a | 72 | A72G | gCa | gGa | 3 | 3 | B.1.1 | 0.000054 |
ORF3a | 72 | A72S | Gca | Tca | 3 | 3 | B.1.1.214 | 0.000166 |
ORF3a | 72 | A72S | Gca | Tca | 3 | 3 | B.1.1.39 | 0.001529 |
ORF3a | 72 | A72S | Gca | Tca | 3 | 3 | B.1.139 | 0.002199 |
ORF3a | 72 | A72T | Gca | Aca | 3 | 3 | B.1.160.11 | 0.017143 |
ORF3a | 72 | A72V | gCa | gTa | 3 | 3 | B.1.177 | 0.00004 |
ORF3a | 72 | A72S | Gca | Tca | 3 | 3 | B.1.177.12 | 0.000455 |
ORF3a | 72 | A72V | gCa | gTa | 3 | 3 | B.1.177.75 | 0.003122 |
ORF3a | 72 | A72S | Gca | Tca | 3 | 3 | B.1.218 | 0.015464 |
ORF3a | 72 | A72T | Gca | Aca | 2 | 3 | B.1.221 | 0.000142 |
ORF3a | 72 | A72T | GcA | AcC | 1 | 3 | B.1.221 | 0.000071 |
ORF3a | 72 | A72S | Gca | Tca | 3 | 3 | B.1.222 | 0.005076 |
ORF3a | 72 | A72V | gCa | gTa | 3 | 3 | B.1.241 | 0.002435 |
ORF3a | 72 | A72T | Gca | Aca | 3 | 3 | B.1.258 | 0.0002 |
ORF3a | 72 | A72S | Gca | Tca | 3 | 3 | B.1.258.11 | 0.001189 |
ORF3a | 72 | A72S | Gca | Tca | 3 | 3 | B.1.359 | 0.068182 |
ORF3a | 72 | A72T | Gca | Aca | 3 | 3 | B.1.36.29 | 0.001552 |
ORF3a | 72 | A72T | Gca | Aca | 3 | 3 | B.1.525 | 0.000339 |
ORF3a | 72 | A72S | Gca | Tca | 3 | 3 | B.1.621 | 0.000266 |
ORF3a | 72 | A72S | Gca | Tca | 3 | 3 | B.26 | 0.044118 |
ORF3a | 72 | A72S | Gca | Tca | 3 | 3 | C.37 | 0.000348 |
ORF3a | 72 | A72S | Gca | Tca | 3 | 3 | P.1.7 | 0.000958 |
ORF3a | 72 | A72del | GCA | --- | 3 | 3 | U.3 | 0.011583 |
ORF3a | 72 | A72L | GCa | TTa | 2 | 2 | 0.111111 | |
ORF3a | 72 | A72F | GCA | TTT | 2 | 2 | 0.111111 | |
ORF3a | 72 | A72R | GCa | AGa | 2 | 2 | 0.111111 | |
ORF3a | 72 | A72S | Gca | Tca | 2 | 2 | A.2 | 0.001324 |
ORF3a | 72 | A72S | Gca | Tca | 2 | 2 | A.23.1 | 0.001408 |
ORF3a | 72 | A72A | gcA | gcC | 2 | 2 | A.27 | 0.003311 |
ORF3a | 72 | A72S | Gca | Tca | 2 | 2 | A.29 | 0.010638 |
ORF3a | 72 | A72S | Gca | Tca | 2 | 2 | AD.2 | 0.000438 |
ORF3a | 72 | A72Q | GCa | CAa | 2 | 2 | All | 0 |
ORF3a | 72 | A72R | GCa | AGa | 2 | 2 | All | 0 |
ORF3a | 72 | A72F | GCA | TTT | 2 | 2 | All | 0 |
ORF3a | 72 | A72K | GCa | AAa | 2 | 2 | All | 0 |
ORF3a | 72 | A72S | Gca | Tca | 2 | 2 | AY.1 | 0.000791 |
ORF3a | 72 | A72S | Gca | Tca | 2 | 2 | AY.10 | 0.00106 |
ORF3a | 72 | A72P | Gca | Cca | 2 | 2 | AY.102 | 0.000053 |
ORF3a | 72 | A72V | gCa | gTa | 2 | 2 | AY.102 | 0.000053 |
ORF3a | 72 | A72T | Gca | Aca | 2 | 2 | AY.116.1 | 0.000623 |
ORF3a | 72 | A72S | Gca | Tca | 2 | 2 | AY.117 | 0.000169 |
ORF3a | 72 | A72T | Gca | Aca | 2 | 2 | AY.119 | 0.000071 |
ORF3a | 72 | A72V | gCa | gTa | 2 | 2 | AY.120.1 | 0.000642 |
ORF3a | 72 | A72del | GCA | --- | 2 | 2 | AY.23 | 0.000139 |
ORF3a | 72 | A72A | gcA | gcT | 2 | 2 | AY.26 | 0.000057 |
ORF3a | 72 | A72S | Gca | Tca | 2 | 2 | AY.29.1 | 0.000441 |
ORF3a | 72 | A72V | gCa | gTa | 2 | 2 | AY.3 | 0.00002 |
ORF3a | 72 | A72T | Gca | Aca | 2 | 2 | AY.35 | 0.000466 |
ORF3a | 72 | A72A | gcA | gcC | 2 | 2 | AY.36 | 0.000296 |
ORF3a | 72 | A72del | GCA | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF3a | 72 | A72S | Gca | Tca | 2 | 2 | AY.4.5 | 0.000215 |
ORF3a | 72 | A72V | gCa | gTa | 2 | 2 | AY.4.5 | 0.000215 |
ORF3a | 72 | A72D | gCA | gAC | 2 | 2 | AY.43 | 0.000009 |
ORF3a | 72 | A72del | GCA | --- | 2 | 2 | AY.43 | 0.000009 |
ORF3a | 72 | A72A | gcA | gcC | 2 | 2 | AY.44 | 0.000012 |
ORF3a | 72 | A72T | Gca | Aca | 2 | 2 | AY.46 | 0.000208 |
ORF3a | 72 | A72S | Gca | Tca | 2 | 2 | AY.46 | 0.000208 |
ORF3a | 72 | A72T | Gca | Aca | 2 | 2 | AY.5 | 0.000041 |
ORF3a | 72 | A72S | Gca | Tca | 2 | 2 | AY.59 | 0.001059 |
ORF3a | 72 | A72S | Gca | Tca | 2 | 2 | AY.61 | 0.00021 |
ORF3a | 72 | A72S | Gca | Tca | 2 | 2 | AY.7.1 | 0.000225 |
ORF3a | 72 | A72T | Gca | Aca | 2 | 2 | AY.71 | 0.00095 |
ORF3a | 72 | A72S | Gca | Tca | 2 | 2 | AY.71 | 0.00095 |
ORF3a | 72 | A72V | gCa | gTa | 2 | 2 | AY.84 | 0.000875 |
ORF3a | 72 | A72V | gCa | gTa | 2 | 2 | AY.98 | 0.000158 |
ORF3a | 72 | A72S | Gca | Tca | 2 | 2 | AY.98.1 | 0.000097 |
ORF3a | 72 | A72S | Gca | Tca | 2 | 2 | AY.99 | 0.002099 |
ORF3a | 72 | A72A | gcA | gcC | 1 | 2 | B.1 | 0.000009 |
ORF3a | 72 | A72A | gcA | gcG | 1 | 2 | B.1 | 0.000009 |
ORF3a | 72 | A72del | GCA | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF3a | 72 | A72S | Gca | Tca | 2 | 2 | B.1.1.153 | 0.002191 |
ORF3a | 72 | A72S | Gca | Tca | 2 | 2 | B.1.1.170 | 0.002494 |
ORF3a | 72 | A72S | Gca | Tca | 2 | 2 | B.1.1.204 | 0.006079 |
ORF3a | 72 | A72V | gCa | gTa | 2 | 2 | B.1.1.216 | 0.001781 |
ORF3a | 72 | A72S | Gca | Tca | 2 | 2 | B.1.1.28 | 0.000622 |
ORF3a | 72 | A72S | Gca | Tca | 2 | 2 | B.1.1.306 | 0.000877 |
ORF3a | 72 | A72S | Gca | Tca | 2 | 2 | B.1.1.318 | 0.000604 |
ORF3a | 72 | A72A | gcA | gcG | 2 | 2 | B.1.1.318 | 0.000604 |
ORF3a | 72 | A72T | Gca | Aca | 2 | 2 | B.1.1.33 | 0.000842 |
ORF3a | 72 | A72S | Gca | Tca | 2 | 2 | B.1.1.375 | 0.02381 |
ORF3a | 72 | A72V | gCa | gTa | 2 | 2 | B.1.1.385 | 0.008929 |
ORF3a | 72 | A72S | Gca | Tca | 2 | 2 | B.1.1.420 | 0.002012 |
ORF3a | 72 | A72S | Gca | Tca | 2 | 2 | B.1.1.434 | 0.000697 |
ORF3a | 72 | A72S | Gca | Tca | 2 | 2 | B.1.1.50 | 0.001358 |
ORF3a | 72 | A72V | gCa | gTa | 2 | 2 | B.1.1.50 | 0.001358 |
ORF3a | 72 | A72S | Gca | Tca | 2 | 2 | B.1.1.70 | 0.000682 |
ORF3a | 72 | A72S | Gca | Tca | 2 | 2 | B.1.160.30 | 0.005952 |
ORF3a | 72 | A72T | Gca | Aca | 2 | 2 | B.1.177 | 0.000026 |
ORF3a | 72 | A72T | Gca | Aca | 2 | 2 | B.1.177.18 | 0.00232 |
ORF3a | 72 | A72S | Gca | Tca | 2 | 2 | B.1.177.60 | 0.000437 |
ORF3a | 72 | A72V | gCa | gTa | 2 | 2 | B.1.177.77 | 0.001452 |
ORF3a | 72 | A72V | gCa | gTa | 2 | 2 | B.1.177.81 | 0.000379 |
ORF3a | 72 | A72V | gCa | gTa | 2 | 2 | B.1.177.86 | 0.000367 |
ORF3a | 72 | A72A | gcA | gcT | 2 | 2 | B.1.2 | 0.000018 |
ORF3a | 72 | A72del1 | GcA | -cC | 1 | 2 | B.1.2 | 0.000009 |
ORF3a | 72 | A72del1 | gcA | gc- | 1 | 2 | B.1.2 | 0.000009 |
ORF3a | 72 | A72V | gCa | gTa | 2 | 2 | B.1.243 | 0.000139 |
ORF3a | 72 | A72P | Gca | Cca | 2 | 2 | B.1.258 | 0.000133 |
ORF3a | 72 | A72S | Gca | Tca | 2 | 2 | B.1.258.2 | 0.009009 |
ORF3a | 72 | A72S | Gca | Tca | 2 | 2 | B.1.351.2 | 0.000605 |
ORF3a | 72 | A72T | Gca | Aca | 2 | 2 | B.1.36 | 0.000292 |
ORF3a | 72 | A72T | Gca | Aca | 2 | 2 | B.1.36.1 | 0.002281 |
ORF3a | 72 | A72S | Gca | Tca | 2 | 2 | B.1.36.29 | 0.001035 |
ORF3a | 72 | A72S | Gca | Tca | 2 | 2 | B.1.369 | 0.00057 |
ORF3a | 72 | A72V | gCa | gTa | 2 | 2 | B.1.438.1 | 0.000215 |
ORF3a | 72 | A72T | Gca | Aca | 2 | 2 | B.1.438.1 | 0.000215 |
ORF3a | 72 | A72S | Gca | Tca | 2 | 2 | B.1.525 | 0.000226 |
ORF3a | 72 | A72del | GCA | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF3a | 72 | A72V | gCa | gTa | 2 | 2 | C.11 | 0.021277 |
ORF3a | 72 | A72T | Gca | Aca | 2 | 2 | P.1.15 | 0.000465 |
ORF3a | 72 | A72S | Gca | Tca | 2 | 2 | Q.1 | 0.000253 |
ORF3a | 72 | A72Q | GCa | CAa | 1 | 1 | 0.055556 | |
ORF3a | 72 | A72K | GCa | AAa | 1 | 1 | 0.055556 | |
ORF3a | 72 | A72E | gCa | gAa | 1 | 1 | 0.055556 | |
ORF3a | 72 | A72P | Gca | Cca | 1 | 1 | 0.055556 | |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | A.1 | 0.000282 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | A.21 | 0.00277 |
ORF3a | 72 | A72del | GCA | --- | 1 | 1 | AD.2 | 0.000219 |
ORF3a | 72 | A72del | GCA | --- | 1 | 1 | AH.3 | 0.003802 |
ORF3a | 72 | A72N | GCA | AAC | 1 | 1 | All | 0 |
ORF3a | 72 | A72H | GCA | CAC | 1 | 1 | All | 0 |
ORF3a | 72 | A72A | gcA | gcG | 1 | 1 | AY.103 | 0.000006 |
ORF3a | 72 | A72A | gcA | gcG | 1 | 1 | AY.104 | 0.001984 |
ORF3a | 72 | A72del | GCA | --- | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | AY.116 | 0.000287 |
ORF3a | 72 | A72V | gCa | gTa | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | AY.12 | 0.000316 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | AY.121 | 0.000135 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | AY.14 | 0.000088 |
ORF3a | 72 | A72V | gCa | gTa | 1 | 1 | AY.16 | 0.00038 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | AY.16.1 | 0.00047 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 72 | A72V | gCa | gTa | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | AY.24 | 0.000431 |
ORF3a | 72 | A72del | GCA | --- | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 72 | A72P | Gca | Cca | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 72 | A72D | gCA | gAC | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | AY.3.1 | 0.000085 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | AY.32 | 0.000532 |
ORF3a | 72 | A72del | GCA | --- | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 72 | A72A | gcA | gcG | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 72 | A72V | gCa | gTa | 1 | 1 | AY.34 | 0.000097 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | AY.36 | 0.000148 |
ORF3a | 72 | A72A | gcA | gcT | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 72 | A72del | GCA | --- | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 72 | A72G | gCa | gGa | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 72 | A72E | gCa | gAa | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 72 | A72del | GCA | --- | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 72 | A72E | gCa | gAa | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | AY.4.3 | 0.000842 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | AY.40 | 0.000964 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 72 | A72E | gCa | gAa | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 72 | A72E | gCA | gAG | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 72 | A72V | gCa | gTa | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 72 | A72E | gCa | gAa | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 72 | A72D | gCA | gAC | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 72 | A72A | gcA | gcG | 1 | 1 | AY.45 | 0.000122 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | AY.45 | 0.000122 |
ORF3a | 72 | A72A | gcA | gcT | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | AY.46.3 | 0.000934 |
ORF3a | 72 | A72P | Gca | Cca | 1 | 1 | AY.46.6 | 0.000072 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | AY.47 | 0.000031 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | AY.49 | 0.003195 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | AY.49 | 0.003195 |
ORF3a | 72 | A72V | gCa | gTa | 1 | 1 | AY.49 | 0.003195 |
ORF3a | 72 | A72A | gcA | gcC | 1 | 1 | AY.5 | 0.000021 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | AY.5.4 | 0.000277 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | AY.52 | 0.000814 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | AY.53 | 0.000288 |
ORF3a | 72 | A72V | gCa | gTa | 1 | 1 | AY.55 | 0.000917 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | AY.55 | 0.000917 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | AY.64 | 0.000595 |
ORF3a | 72 | A72del | GCA | --- | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | AY.69 | 0.000187 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | AY.70 | 0.000209 |
ORF3a | 72 | A72V | gCa | gTa | 1 | 1 | AY.71 | 0.000475 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | AY.77 | 0.001127 |
ORF3a | 72 | A72L | GCA | TTG | 1 | 1 | AY.79 | 0.001211 |
ORF3a | 72 | A72V | gCa | gTa | 1 | 1 | AY.82 | 0.001357 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | AY.9 | 0.000068 |
ORF3a | 72 | A72del | GCA | --- | 1 | 1 | AY.9 | 0.000068 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | AY.9.1 | 0.000084 |
ORF3a | 72 | A72V | gCa | gTa | 1 | 1 | AY.9.1 | 0.000084 |
ORF3a | 72 | A72P | Gca | Cca | 1 | 1 | AY.9.2 | 0.000037 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | AY.90 | 0.000684 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | AY.92 | 0.000287 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | AY.92 | 0.000287 |
ORF3a | 72 | A72V | gCa | gTa | 1 | 1 | AY.96 | 0.002075 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | AY.98 | 0.000079 |
ORF3a | 72 | A72A | gcA | gcG | 1 | 1 | AY.98 | 0.000079 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 72 | A72del | GCA | --- | 1 | 1 | AY.99 | 0.001049 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | B | 0.000128 |
ORF3a | 72 | A72K | GCa | AAa | 1 | 1 | B.1 | 0.000009 |
ORF3a | 72 | A72N | GCA | AAC | 1 | 1 | B.1 | 0.000009 |
ORF3a | 72 | A72D | gCA | gAC | 1 | 1 | B.1 | 0.000009 |
ORF3a | 72 | A72Q | GCa | CAa | 1 | 1 | B.1 | 0.000009 |
ORF3a | 72 | A72H | GCA | CAC | 1 | 1 | B.1 | 0.000009 |
ORF3a | 72 | A72P | Gca | Cca | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 72 | A72A | gcA | gcG | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 72 | A72V | gCa | gTa | 1 | 1 | B.1.1.1 | 0.000327 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.1.1 | 0.000327 |
ORF3a | 72 | A72S | GCA | AGC | 1 | 1 | B.1.1.139 | 0.022727 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.1.174 | 0.003378 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.1.189 | 0.001513 |
ORF3a | 72 | A72V | gCa | gTa | 1 | 1 | B.1.1.214 | 0.000055 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.1.216 | 0.00089 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | B.1.1.220 | 0.001859 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | B.1.1.222 | 0.000204 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.1.222 | 0.000204 |
ORF3a | 72 | A72V | gCa | gTa | 1 | 1 | B.1.1.230 | 0.009174 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.1.241 | 0.00207 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.1.25 | 0.000569 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.1.301 | 0.001179 |
ORF3a | 72 | A72V | gCa | gTa | 1 | 1 | B.1.1.37 | 0.000193 |
ORF3a | 72 | A72V | gCa | gTa | 1 | 1 | B.1.1.39 | 0.00051 |
ORF3a | 72 | A72del | GCA | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.1.464 | 0.001473 |
ORF3a | 72 | A72P | Gca | Cca | 1 | 1 | B.1.1.464 | 0.001473 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 72 | A72P | Gca | Cca | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 72 | A72G | gCa | gGa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 72 | A72del1 | Gca | -ca | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | B.1.110.3 | 0.000718 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.127 | 0.002198 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | B.1.128 | 0.000635 |
ORF3a | 72 | A72V | gCa | gTa | 1 | 1 | B.1.139 | 0.000733 |
ORF3a | 72 | A72V | gCa | gTa | 1 | 1 | B.1.146 | 0.004237 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.157 | 0.002985 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.160.16 | 0.000929 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.160.23 | 0.004831 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.160.29 | 0.004219 |
ORF3a | 72 | A72del | GCA | --- | 1 | 1 | B.1.161 | 0.017241 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.177.16 | 0.000664 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.177.17 | 0.000821 |
ORF3a | 72 | A72del | GCA | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.177.44 | 0.000519 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.177.6 | 0.000977 |
ORF3a | 72 | A72P | Gca | Cca | 1 | 1 | B.1.177.60 | 0.000218 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.177.75 | 0.001041 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.177.86 | 0.000183 |
ORF3a | 72 | A72G | gCa | gGa | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.210 | 0.002132 |
ORF3a | 72 | A72V | gCa | gTa | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 72 | A72L | GCa | TTa | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 72 | A72A | gcA | gcC | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 72 | A72E | gCa | gAa | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | B.1.232 | 0.000537 |
ORF3a | 72 | A72A | gcA | gcC | 1 | 1 | B.1.234 | 0.000132 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.235 | 0.002519 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | B.1.240 | 0.000216 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | B.1.241 | 0.000812 |
ORF3a | 72 | A72A | gcA | gcT | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.258.12 | 0.007874 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.258.14 | 0.00098 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.258.15 | 0.018868 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.258.3 | 0.001675 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.284 | 0.013158 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.293 | 0.0125 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | B.1.311 | 0.000275 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.326 | 0.007576 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.329 | 0.000608 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.349 | 0.000715 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.36.27 | 0.000763 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.36.35 | 0.002604 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.375 | 0.00082 |
ORF3a | 72 | A72V | gCa | gTa | 1 | 1 | B.1.389 | 0.001002 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.40 | 0.019608 |
ORF3a | 72 | A72del | GCA | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.416.1 | 0.001563 |
ORF3a | 72 | A72A | gcA | gcG | 1 | 1 | B.1.427 | 0.00005 |
ORF3a | 72 | A72del | GCA | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.437 | 0.020833 |
ORF3a | 72 | A72del | GCA | --- | 1 | 1 | B.1.446 | 0.02 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.473 | 0.019231 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.499 | 0.00105 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.516 | 0.001957 |
ORF3a | 72 | A72V | gCa | gTa | 1 | 1 | B.1.523 | 0.002451 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.527 | 0.003704 |
ORF3a | 72 | A72del | GCA | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.568 | 0.001111 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.575.1 | 0.002439 |
ORF3a | 72 | A72del | GCA | --- | 1 | 1 | B.1.585 | 0.027778 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | B.1.599 | 0.00365 |
ORF3a | 72 | A72E | gCa | gAa | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 72 | A72del1 | gcA | gc- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 72 | A72D | gCA | gAC | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 72 | A72E | gCa | gAa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | B.1.621 | 0.000089 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.625 | 0.002353 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.627 | 0.00202 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.632 | 0.006711 |
ORF3a | 72 | A72A | gcA | gcT | 1 | 1 | B.1.637 | 0.000073 |
ORF3a | 72 | A72del | GCA | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF3a | 72 | A72A | gcA | gcG | 1 | 1 | B.1.639 | 0.021739 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.78 | 0.008547 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | B.1.91 | 0.002075 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.1.94 | 0.027027 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | B.3.1 | 0.001658 |
ORF3a | 72 | A72V | gCa | gTa | 1 | 1 | B.40 | 0.000364 |
ORF3a | 72 | A72V | gCa | gTa | 1 | 1 | B.55 | 0.00295 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | C.1.2 | 0.004255 |
ORF3a | 72 | A72V | gCa | gTa | 1 | 1 | C.14 | 0.004329 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | C.37 | 0.000116 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | D.2 | 0.000075 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | K.1 | 0.02381 |
ORF3a | 72 | A72V | gCa | gTa | 1 | 1 | P.1 | 0.000016 |
ORF3a | 72 | A72A | gcA | gcC | 1 | 1 | P.1 | 0.000016 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | P.1.12 | 0.000484 |
ORF3a | 72 | A72P | Gca | Cca | 1 | 1 | P.1.12 | 0.000484 |
ORF3a | 72 | A72V | gCa | gTa | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 72 | A72del | GCA | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | P.2 | 0.000187 |
ORF3a | 72 | A72V | gCa | gTa | 1 | 1 | Q.1 | 0.000126 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | Q.7 | 0.001111 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | Q.8 | 0.000165 |
ORF3a | 72 | A72T | Gca | Aca | 1 | 1 | Q.8 | 0.000165 |
ORF3a | 72 | A72S | Gca | Tca | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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