CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 71 & Codon = Tta

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a71L71LsynCtaTta795577470.97385325603-25605

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a71L71LCtaTta77477955All0.001482
ORF3a71L71LCtaTta16541683B.1.1.70.001481
ORF3a71L71LCtaTta757771B.1.617.20.00285
ORF3a71L71LCtaTta721730AY.40.001122
ORF3a71L71LCtaTta575575AY.1000.026454
ORF3a71L71LCtaTta476476B.1.351.30.417178
ORF3a71L71LCtaTta261264B.1.4290.006141
ORF3a71L71LCtaTta262263AY.1030.001627
ORF3a71L71LCtaTta238255B.1.20.002096
ORF3a71L71LCtaTta211220AY.440.001284
ORF3a71L71LCtaTta151151AT.10.774359
ORF3a71L71LCtaTta142144P.10.002237
ORF3a71L71LCtaTta134139AY.430.000594
ORF3a71L71LCtaTta125133AY.4.20.002711
ORF3a71L71LCtaTta118123B.10.001081
ORF3a71L71LCtaTta104104AY.860.086307
ORF3a71L71LCtaTta101101B.1.3690.028808
ORF3a71L71LCtaTta9193B.1.10.001651
ORF3a71L71LCtaTta8587B.1.3510.002527
ORF3a71L71LCtaTta7576B.1.1770.000988
ORF3a71L71LCtaTta869AY.99.20.000737
ORF3a71L71LCtaTta6667AY.250.000397
ORF3a71L71LCtaTta5457AY.30.000537
ORF3a71L71LCtaTta5454AY.50.001115
ORF3a71L71LCtaTta5050B.1.1.4870.27933
ORF3a71L71LCtaTta4848B.1.2650.060991
ORF3a71L71LCtaTta4242B.1.177.210.003212
ORF3a71L71LCtaTta3535B.1.1.930.897436
ORF3a71L71LCtaTta3232B.1.1470.024187
ORF3a71L71LCtaTta2727AY.7.10.003043
ORF3a71L71LCtaTta2526B.1.2430.00174
ORF3a71L71LCtaTta2325AY.1020.00061
ORF3a71L71LCtaTta2525AY.390.000618
ORF3a71L71LCtaTta2425B.1.2210.001705
ORF3a71L71LCtaTta2323AY.260.000651
ORF3a71L71LCtaTta2222AY.610.002305
ORF3a71L71LCtaTta2020AY.360.002964
ORF3a71L71LCtaTta1919Q.10.0024
ORF3a71L71LCtaTta1818AY.1190.000636
ORF3a71L71LCtaTta1718B.1.1.2220.003468
ORF3a71L71LCtaTta1818C.370.002089
ORF3a71L71LCtaTta1717B.1.2410.013799
ORF3a71L71LCtaTta1316AY.230.000907
ORF3a71L71LCtaTta1616AY.900.010951
ORF3a71L71LCtaTta1515AY.39.10.000594
ORF3a71L71LCtaTta1415AY.470.000435
ORF3a71L71LCtaTta1414AY.1170.001183
ORF3a71L71LCtaTta1414AY.200.000544
ORF3a71L71LCtaTta1314B.1.4270.000656
ORF3a71L71LCtaTta1414B.1.6210.001239
ORF3a71L71LCtaTta1414P.1.130.012579
ORF3a71L71LCtaTta1313AY.98.10.00063
ORF3a71L71LCtaTta1313B.1.351.20.003933
ORF3a71L71LCtaTta1212AY.340.001164
ORF3a71L71LCtaTta1112AY.850.004699
ORF3a71L71LCtaTta1212B.1.1600.000374
ORF3a71L71LCtaTta1212B.1.360.001751
ORF3a71L71LCtaTta1111B.1.1.2160.009795
ORF3a71L71LCtaTta1111B.1.1.3700.139241
ORF3a71L71LCtaTta1010B.1.1.5190.000397
ORF3a71L71LCtaTta1010B.1.5260.000235
ORF3a71L71LCtaTta99AY.1160.002581
ORF3a71L71LCtaTta89B.1.1.4320.010127
ORF3a71L71LCtaTta99B.1.2340.001187
ORF3a71L71LCtaTta89B.1.5960.000697
ORF3a71L71LCtaTta99C.160.009544
ORF3a71L71LCtaTta88AY.330.000534
ORF3a71L71LCtaTta78AY.420.000282
ORF3a71L71LCtaTta88AY.540.000763
ORF3a71L71LCtaTta88AY.9.20.000294
ORF3a71L71LCtaTta88AY.980.000632
ORF3a71L71LCtaTta88B.1.1.630.003086
ORF3a71L71LCtaTta77AY.5.40.001937
ORF3a71L71LCtaTta47AY.840.00175
ORF3a71L71LCtaTta77B0.000895
ORF3a71L71LCtaTta77B.1.617.10.000903
ORF3a71L71LCtaTta77P.20.001306
ORF3a71L71LCtaTta36AY.1130.000427
ORF3a71L71LCtaTta66AY.120.001896
ORF3a71L71LCtaTta56AY.1200.000186
ORF3a71L71LCtaTta66AY.1210.000812
ORF3a71L71LCtaTta66AY.530.001725
ORF3a71L71LCtaTta66B.1.1.4160.00543
ORF3a71L71LCtaTta66B.1.1.500.004073
ORF3a71L71LCtaTta66B.1.177.770.004357
ORF3a71L71LCtaTta66B.1.3460.007864
ORF3a71L71LCtaTta66B.1.4970.001889
ORF3a71L71LCtaTta66B.1.6370.000438
ORF3a71L71LCtaTta66C.280.24
ORF3a71L71LCtaTta55AY.1140.001156
ORF3a71L71LCtaTta55AY.140.00044
ORF3a71L71LCtaTta55AY.290.000079
ORF3a71L71LCtaTta55AY.3.10.000426
ORF3a71L71LCtaTta55AY.450.000608
ORF3a71L71LCtaTta55AY.750.00028
ORF3a71L71LCtaTta35AY.75.10.000541
ORF3a71L71LCtaTta55B.1.1.2650.015773
ORF3a71L71LCtaTta55B.1.1.3060.002192
ORF3a71L71LCtaTta55B.1.1.4340.001743
ORF3a71L71LCtaTta55P.1.140.000239
ORF3a71L71LCtaTta55R.10.00045
ORF3a71L71LCtaTta44A.10.001127
ORF3a71L71LCtaTta44A.2.50.001996
ORF3a71L71LCtaTta44AY.1110.000733
ORF3a71L71LCtaTta24AY.1180.000125
ORF3a71L71LCtaTta44AY.460.000416
ORF3a71L71LCtaTta44AY.520.003257
ORF3a71L71LCtaTta44B.1.36.170.001976
ORF3a71L71LCtaTta44B.1.438.10.000429
ORF3a71L71LCtaTta44B.1.4700.005618
ORF3a71L71LCtaTta44B.1.5640.001704
ORF3a71L71LCtaTta44B.1.6000.023392
ORF3a71L71LCtaTta44B.6.60.003556
ORF3a71L71LCtaTta130.055556
ORF3a71L71LCtaTta33AE.80.001467
ORF3a71L71LCtaTta23AY.16.10.00094
ORF3a71L71LCtaTta33AY.270.000194
ORF3a71L71LCtaTta33AY.380.001498
ORF3a71L71LCtaTta33AY.4.50.000322
ORF3a71L71LCtaTta33AY.670.001393
ORF3a71L71LCtaTta33AY.740.000347
ORF3a71L71LCtaTta23AY.90.000135
ORF3a71L71LCtaTta33AY.9.10.000251
ORF3a71L71LCtaTta33B.1.1.370.000579
ORF3a71L71LCtaTta33B.1.177.420.002683
ORF3a71L71LCtaTta33B.1.177.70.000495
ORF3a71L71LCtaTta33B.1.2400.000647
ORF3a71L71LCtaTta33B.1.2580.0002
ORF3a71L71LCtaTta33B.1.5090.002597
ORF3a71L71LCtaTta33B.1.5170.001281
ORF3a71L71LCtaTta33B.1.5950.000783
ORF3a71L71LCtaTta33B.400.001093
ORF3a71L71LCtaTta33C.350.002322
ORF3a71L71LCtaTta23D.20.00015
ORF3a71L71LCtaTta33P.30.004785
ORF3a71L71LCtaTta33Q.80.000495
ORF3a71L71LCtaTta33Z.10.008671
ORF3a71L71LCtaTta22AY.1090.001479
ORF3a71L71LCtaTta22AY.160.000759
ORF3a71L71LCtaTta22AY.350.000466
ORF3a71L71LCtaTta22AY.370.000632
ORF3a71L71LCtaTta22AY.39.20.003082
ORF3a71L71LCtaTta12AY.4.30.000842
ORF3a71L71LCtaTta22AY.46.40.000329
ORF3a71L71LCtaTta22AY.46.50.000397
ORF3a71L71LCtaTta12AY.46.60.000072
ORF3a71L71LCtaTta22AY.5.30.000675
ORF3a71L71LCtaTta22AY.790.002421
ORF3a71L71LCtaTta22AY.910.001461
ORF3a71L71LCtaTta12AY.920.000287
ORF3a71L71LCtaTta22AY.950.001522
ORF3a71L71LCtaTta22B.1.1.1800.021505
ORF3a71L71LCtaTta22B.1.1.2090.017857
ORF3a71L71LCtaTta22B.1.1.2140.000111
ORF3a71L71LCtaTta22B.1.1.250.001137
ORF3a71L71LCtaTta22B.1.1.3170.000823
ORF3a71L71LCtaTta22B.1.1.330.000842
ORF3a71L71LCtaTta22B.1.1.3590.055556
ORF3a71L71LCtaTta22B.1.1.3970.004505
ORF3a71L71LCtaTta22B.1.160.250.022222
ORF3a71L71LCtaTta22B.1.177.120.000303
ORF3a71L71LCtaTta22B.1.177.330.003289
ORF3a71L71LCtaTta22B.1.177.480.00625
ORF3a71L71LCtaTta22B.1.177.560.001335
ORF3a71L71LCtaTta22B.1.177.620.002384
ORF3a71L71LCtaTta22B.1.177.820.000955
ORF3a71L71LCtaTta22B.1.177.860.000367
ORF3a71L71LCtaTta22B.1.214.20.001199
ORF3a71L71LCtaTta22B.1.3110.000549
ORF3a71L71LCtaTta22B.1.3670.001585
ORF3a71L71LCtaTta22B.1.4090.001563
ORF3a71L71LCtaTta22B.1.4280.002041
ORF3a71L71LCtaTta22B.1.4480.005249
ORF3a71L71LCtaTta22B.1.4690.00722
ORF3a71L71LCtaTta22B.1.5410.00885
ORF3a71L71LCtaTta22B.1.5500.027397
ORF3a71L71LCtaTta22B.1.5680.002222
ORF3a71L71LCtaTta22B.1.5740.004301
ORF3a71L71LCtaTta22B.1.5750.000607
ORF3a71L71LCtaTta22B.1.6090.000959
ORF3a71L71LCtaTta22C.180.005181
ORF3a71L71LCtaTta22C.360.001821
ORF3a71L71LCtaTta22P.1.120.000968
ORF3a71L71LCtaTta22P.1.150.000465
ORF3a71L71LCtaTta11A0.000387
ORF3a71L71LCtaTta11A.180.05
ORF3a71L71LCtaTta11A.30.002096
ORF3a71L71LCtaTta11AY.10.000396
ORF3a71L71LCtaTta11AY.1010.00049
ORF3a71L71LCtaTta11AY.120.10.000321
ORF3a71L71LCtaTta11AY.210.001898
ORF3a71L71LCtaTta11AY.23.10.000417
ORF3a71L71LCtaTta11AY.280.00189
ORF3a71L71LCtaTta11AY.29.10.000221
ORF3a71L71LCtaTta11AY.300.000396
ORF3a71L71LCtaTta11AY.320.000532
ORF3a71L71LCtaTta11AY.4.2.10.000149
ORF3a71L71LCtaTta11AY.46.20.000635
ORF3a71L71LCtaTta11AY.550.000917
ORF3a71L71LCtaTta11AY.560.001605
ORF3a71L71LCtaTta11AY.590.00053
ORF3a71L71LCtaTta11AY.60.000041
ORF3a71L71LCtaTta11AY.620.000436
ORF3a71L71LCtaTta11AY.650.000533
ORF3a71L71LCtaTta11AY.680.000274
ORF3a71L71LCtaTta11AY.690.000187
ORF3a71L71LCtaTta11AY.70.000196
ORF3a71L71LCtaTta11AY.700.000209
ORF3a71L71LCtaTta11AY.730.000665
ORF3a71L71LCtaTta11AY.780.001541
ORF3a71L71LCtaTta11AY.930.000273
ORF3a71L71LCtaTta11AY.940.000443
ORF3a71L71LCtaTta11AY.970.001701
ORF3a71L71LCtaTta11AY.990.001049
ORF3a71L71LCtaTta11AZ.20.000821
ORF3a71L71LCtaTta11AZ.50.003509
ORF3a71L71LCtaTta11B.1.1.1140.066667
ORF3a71L71LCtaTta11B.1.1.1150.008929
ORF3a71L71LCtaTta11B.1.1.1380.006061
ORF3a71L71LCtaTta11B.1.1.2070.001182
ORF3a71L71LCtaTta11B.1.1.2410.00207
ORF3a71L71LCtaTta11B.1.1.2510.007937
ORF3a71L71LCtaTta11B.1.1.2580.003257
ORF3a71L71LCtaTta11B.1.1.280.000311
ORF3a71L71LCtaTta11B.1.1.3070.002532
ORF3a71L71LCtaTta11B.1.1.3360.016667
ORF3a71L71LCtaTta11B.1.1.3490.010309
ORF3a71L71LCtaTta11B.1.1.3620.005618
ORF3a71L71LCtaTta11B.1.1.3690.000446
ORF3a71L71LCtaTta11B.1.1.3720.000689
ORF3a71L71LCtaTta11B.1.1.3980.003226
ORF3a71L71LCtaTta11B.1.1.400.034483
ORF3a71L71LCtaTta11B.1.1.4060.006494
ORF3a71L71LCtaTta11B.1.1.4330.001425
ORF3a71L71LCtaTta11B.1.1.4400.011765
ORF3a71L71LCtaTta11B.1.1.4470.035714
ORF3a71L71LCtaTta11B.1.1.540.003021
ORF3a71L71LCtaTta11B.1.1390.000733
ORF3a71L71LCtaTta11B.1.160.160.000929
ORF3a71L71LCtaTta11B.1.177.320.00135
ORF3a71L71LCtaTta11B.1.177.380.010417
ORF3a71L71LCtaTta11B.1.177.40.000211
ORF3a71L71LCtaTta11B.1.177.430.001477
ORF3a71L71LCtaTta11B.1.177.540.000606
ORF3a71L71LCtaTta11B.1.177.590.016129
ORF3a71L71LCtaTta11B.1.177.730.000566
ORF3a71L71LCtaTta11B.1.2060.000816
ORF3a71L71LCtaTta11B.1.258.170.000104
ORF3a71L71LCtaTta11B.1.258.50.008772
ORF3a71L71LCtaTta11B.1.2640.012346
ORF3a71L71LCtaTta11B.1.2790.000514
ORF3a71L71LCtaTta11B.1.3180.038462
ORF3a71L71LCtaTta11B.1.3290.000608
ORF3a71L71LCtaTta11B.1.3380.008621
ORF3a71L71LCtaTta11B.1.3540.043478
ORF3a71L71LCtaTta11B.1.3560.001727
ORF3a71L71LCtaTta11B.1.36.160.001425
ORF3a71L71LCtaTta11B.1.36.180.00042
ORF3a71L71LCtaTta11B.1.36.260.002857
ORF3a71L71LCtaTta11B.1.36.290.000517
ORF3a71L71LCtaTta11B.1.3610.001289
ORF3a71L71LCtaTta11B.1.3620.001541
ORF3a71L71LCtaTta11B.1.3960.000706
ORF3a71L71LCtaTta11B.1.4000.000429
ORF3a71L71LCtaTta11B.1.4050.012346
ORF3a71L71LCtaTta11B.1.4410.009615
ORF3a71L71LCtaTta11B.1.4620.007246
ORF3a71L71LCtaTta11B.1.4660.023256
ORF3a71L71LCtaTta11B.1.466.20.000391
ORF3a71L71LCtaTta11B.1.4990.00105
ORF3a71L71LCtaTta11B.1.5000.052632
ORF3a71L71LCtaTta11B.1.5010.007353
ORF3a71L71LCtaTta11B.1.5030.002488
ORF3a71L71LCtaTta11B.1.5050.004386
ORF3a71L71LCtaTta11B.1.5250.000113
ORF3a71L71LCtaTta11B.1.5380.008065
ORF3a71L71LCtaTta11B.1.5580.004566
ORF3a71L71LCtaTta11B.1.5650.00081
ORF3a71L71LCtaTta11B.1.5820.000491
ORF3a71L71LCtaTta11B.1.617.30.002985
ORF3a71L71LCtaTta11B.1.6190.000871
ORF3a71L71LCtaTta11B.1.6200.000946
ORF3a71L71LCtaTta11B.3.10.001658
ORF3a71L71LCtaTta11C.30.007634
ORF3a71L71LCtaTta11N.50.001767
ORF3a71L71LCtaTta11P.1.10.000318
ORF3a71L71LCtaTta11P.1.160.000374
ORF3a71L71LCtaTta11P.1.20.001156
ORF3a71L71LCtaTta11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.