CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 67 & Codon = aaT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a67K67NnonsynaaGaaT526938990.73998925591-25593

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a67K67NaaGaaT38995269All0.000746
ORF3a67K67NaaGaaT10671102AY.40.001661
ORF3a67K67NaaGaaT6771081B.1.1.70.000606
ORF3a67K67NaaGaaT104299AY.30.001034
ORF3a67K67NaaGaaT204233B.1.617.20.000768
ORF3a67K67NaaGaaT6199P.1.140.000287
ORF3a67K67NaaGaaT143167AY.1030.000888
ORF3a67K67NaaGaaT146152AY.430.000647
ORF3a67K67NaaGaaT107138B.1.20.000942
ORF3a67K67NaaGaaT127127AY.116.10.039552
ORF3a67K67NaaGaaT117118AY.9.20.004297
ORF3a67K67NaaGaaT41103B.10.000376
ORF3a67K67NaaGaaT76100AY.440.000463
ORF3a67K67NaaGaaT1177AY.260.000311
ORF3a67K67NaaGaaT7377AY.470.002271
ORF3a67K67NaaGaaT6161B.1.258.200.968254
ORF3a67K67NaaGaaT3941P.10.000614
ORF3a67K67NaaGaaT1140AY.390.000272
ORF3a67K67NaaGaaT3639B.1.10.000653
ORF3a67K67NaaGaaT3737AY.4.20.000802
ORF3a67K67NaaGaaT2737B.1.3510.000803
ORF3a67K67NaaGaaT2335AY.250.000138
ORF3a67K67NaaGaaT3535B.1.1600.001092
ORF3a67K67NaaGaaT2332AY.1020.00061
ORF3a67K67NaaGaaT2131B.1.5260.000494
ORF3a67K67NaaGaaT1830B.1.4290.000424
ORF3a67K67NaaGaaT1128B.1.1770.000145
ORF3a67K67NaaGaaT1325B.1.1.5190.000516
ORF3a67K67NaaGaaT2324AY.1200.000855
ORF3a67K67NaaGaaT1121AY.39.10.000436
ORF3a67K67NaaGaaT2121B.1.177.770.015251
ORF3a67K67NaaGaaT1919B.1.3660.092683
ORF3a67K67NaaGaaT1718AY.50.000351
ORF3a67K67NaaGaaT817B.1.5950.002088
ORF3a67K67NaaGaaT516AY.330.000334
ORF3a67K67NaaGaaT1515AY.930.004096
ORF3a67K67NaaGaaT1515B.1.6300.078534
ORF3a67K67NaaGaaT1113AY.230.000767
ORF3a67K67NaaGaaT1213AY.340.001164
ORF3a67K67NaaGaaT1313B.1.4000.005577
ORF3a67K67NaaGaaT1313Q.80.002144
ORF3a67K67NaaGaaT1212A.2.50.005988
ORF3a67K67NaaGaaT512AY.1000.00023
ORF3a67K67NaaGaaT912AY.200.00035
ORF3a67K67NaaGaaT1012AY.450.001217
ORF3a67K67NaaGaaT112B.1.1.10.000327
ORF3a67K67NaaGaaT912B.1.1.2140.000499
ORF3a67K67NaaGaaT1112C.370.001277
ORF3a67K67NaaGaaT1111AY.3.10.000938
ORF3a67K67NaaGaaT1111B.1.1.370.002122
ORF3a67K67NaaGaaT1010AY.98.10.000484
ORF3a67K67NaaGaaT1010B.1.36.190.092593
ORF3a67K67NaaGaaT910B.1.4270.000454
ORF3a67K67NaaGaaT99B.1.214.30.064286
ORF3a67K67NaaGaaT39B.1.360.000438
ORF3a67K67NaaGaaT99B.1.5960.000784
ORF3a67K67NaaGaaT78AY.420.000282
ORF3a67K67NaaGaaT68AY.460.000624
ORF3a67K67NaaGaaT88B.1.177.840.053333
ORF3a67K67NaaGaaT77AY.1210.000947
ORF3a67K67NaaGaaT67AY.980.000474
ORF3a67K67NaaGaaT77B.1.177.880.08642
ORF3a67K67NaaGaaT77B.1.2410.005682
ORF3a67K67NaaGaaT77B.1.3690.001997
ORF3a67K67NaaGaaT77B.1.4710.019126
ORF3a67K67NaaGaaT77R.10.00063
ORF3a67K67NaaGaaT46AY.1190.000141
ORF3a67K67NaaGaaT56AY.750.00028
ORF3a67K67NaaGaaT66AY.99.20.000553
ORF3a67K67NaaGaaT66B.1.2400.001293
ORF3a67K67NaaGaaT66B.1.2580.000399
ORF3a67K67NaaGaaT66B.1.258.170.000624
ORF3a67K67NaaGaaT66B.1.3980.017857
ORF3a67K67NaaGaaT26B.1.6210.000177
ORF3a67K67NaaGaaT55AY.1160.001434
ORF3a67K67NaaGaaT55AY.120.20.006427
ORF3a67K67NaaGaaT35B.1.2210.000213
ORF3a67K67NaaGaaT55B.1.36.80.005
ORF3a67K67NaaGaaT55B.1.438.10.000536
ORF3a67K67NaaGaaT340.166667
ORF3a67K67NaaGaaT34A0.001161
ORF3a67K67NaaGaaT24AY.1170.000169
ORF3a67K67NaaGaaT34AY.290.000047
ORF3a67K67NaaGaaT44AY.410.001176
ORF3a67K67NaaGaaT14AY.610.000105
ORF3a67K67NaaGaaT44AY.90.00027
ORF3a67K67NaaGaaT34B.1.1.2220.000612
ORF3a67K67NaaGaaT44B.1.1.2440.061538
ORF3a67K67NaaGaaT44B.1.1.250.002274
ORF3a67K67NaaGaaT44B.1.1.5280.019231
ORF3a67K67NaaGaaT44B.1.2430.000278
ORF3a67K67NaaGaaT44B.1.2700.022472
ORF3a67K67NaaGaaT44C.36.30.002269
ORF3a67K67NaaGaaT23AY.1130.000285
ORF3a67K67NaaGaaT33AY.190.003421
ORF3a67K67NaaGaaT33AY.710.001425
ORF3a67K67NaaGaaT33AY.9.10.000251
ORF3a67K67NaaGaaT13B.1.1.2160.00089
ORF3a67K67NaaGaaT33B.1.1.4860.004732
ORF3a67K67NaaGaaT33B.1.1.510.005155
ORF3a67K67NaaGaaT33B.1.3620.004622
ORF3a67K67NaaGaaT23B.1.466.20.000782
ORF3a67K67NaaGaaT33B.1.617.10.000387
ORF3a67K67NaaGaaT23B.1.6370.000146
ORF3a67K67NaaGaaT13N.40.004255
ORF3a67K67NaaGaaT13P.1.20.001156
ORF3a67K67NaaGaaT12AD.20.000219
ORF3a67K67NaaGaaT22AY.1060.00067
ORF3a67K67NaaGaaT22AY.1090.001479
ORF3a67K67NaaGaaT12AY.1180.000063
ORF3a67K67NaaGaaT22AY.130.000322
ORF3a67K67NaaGaaT22AY.320.001065
ORF3a67K67NaaGaaT22AY.46.60.000144
ORF3a67K67NaaGaaT22AY.530.000575
ORF3a67K67NaaGaaT22AY.540.000191
ORF3a67K67NaaGaaT12AY.560.001605
ORF3a67K67NaaGaaT22B.1.1.2290.011494
ORF3a67K67NaaGaaT22B.1.1.2940.002532
ORF3a67K67NaaGaaT22B.1.1.3280.033898
ORF3a67K67NaaGaaT12B.1.1.330.000421
ORF3a67K67NaaGaaT22B.1.1.3480.001592
ORF3a67K67NaaGaaT22B.1.1.3540.008772
ORF3a67K67NaaGaaT22B.1.1.3680.006173
ORF3a67K67NaaGaaT22B.1.1450.105263
ORF3a67K67NaaGaaT22B.1.177.210.000153
ORF3a67K67NaaGaaT22B.1.2140.007326
ORF3a67K67NaaGaaT22B.1.2340.000264
ORF3a67K67NaaGaaT12B.1.2390.001221
ORF3a67K67NaaGaaT22B.1.258.120.015748
ORF3a67K67NaaGaaT12B.1.3110.000275
ORF3a67K67NaaGaaT12B.1.36.170.000494
ORF3a67K67NaaGaaT22B.1.36.290.001035
ORF3a67K67NaaGaaT22B.1.4800.004975
ORF3a67K67NaaGaaT22B.1.4990.002101
ORF3a67K67NaaGaaT22B.1.5250.000226
ORF3a67K67NaaGaaT22B.1.5400.019417
ORF3a67K67NaaGaaT22B.1.6090.000959
ORF3a67K67NaaGaaT22D.20.00015
ORF3a67K67NaaGaaT22P.1.10.000635
ORF3a67K67NaaGaaT22P.20.000373
ORF3a67K67NaaGaaT11A.10.000282
ORF3a67K67NaaGaaT11A.190.009434
ORF3a67K67NaaGaaT11A.2.5.20.001572
ORF3a67K67NaaGaaT11AY.1050.000643
ORF3a67K67NaaGaaT11AY.1150.005208
ORF3a67K67NaaGaaT11AY.140.000088
ORF3a67K67NaaGaaT11AY.240.000431
ORF3a67K67NaaGaaT11AY.350.000233
ORF3a67K67NaaGaaT11AY.380.000499
ORF3a67K67NaaGaaT11AY.4.50.000107
ORF3a67K67NaaGaaT11AY.400.000964
ORF3a67K67NaaGaaT11AY.480.000465
ORF3a67K67NaaGaaT11AY.5.40.000277
ORF3a67K67NaaGaaT11AY.580.000907
ORF3a67K67NaaGaaT11AY.590.00053
ORF3a67K67NaaGaaT11AY.70.000196
ORF3a67K67NaaGaaT11AY.730.000665
ORF3a67K67NaaGaaT11AY.760.004831
ORF3a67K67NaaGaaT11AY.770.001127
ORF3a67K67NaaGaaT11AY.790.001211
ORF3a67K67NaaGaaT11AY.860.00083
ORF3a67K67NaaGaaT11AY.900.000684
ORF3a67K67NaaGaaT11AY.950.000761
ORF3a67K67NaaGaaT11AY.960.002075
ORF3a67K67NaaGaaT11AY.970.001701
ORF3a67K67NaaGaaT11B.1.1.2180.007692
ORF3a67K67NaaGaaT11B.1.1.2260.005814
ORF3a67K67NaaGaaT11B.1.1.2840.000107
ORF3a67K67NaaGaaT11B.1.1.2970.002237
ORF3a67K67NaaGaaT11B.1.1.3040.002809
ORF3a67K67NaaGaaT11B.1.1.3060.000438
ORF3a67K67NaaGaaT11B.1.1.3180.000302
ORF3a67K67NaaGaaT11B.1.1.3740.002375
ORF3a67K67NaaGaaT11B.1.1.4320.001266
ORF3a67K67NaaGaaT11B.1.1.4420.018519
ORF3a67K67NaaGaaT11B.1.1.4480.002033
ORF3a67K67NaaGaaT11B.1.1.480.002874
ORF3a67K67NaaGaaT11B.1.1.5260.003546
ORF3a67K67NaaGaaT11B.1.1.890.006061
ORF3a67K67NaaGaaT11B.1.177.730.000566
ORF3a67K67NaaGaaT11B.1.177.810.000189
ORF3a67K67NaaGaaT11B.1.177.850.005435
ORF3a67K67NaaGaaT11B.1.177.860.000183
ORF3a67K67NaaGaaT11B.1.1920.009259
ORF3a67K67NaaGaaT11B.1.2230.002778
ORF3a67K67NaaGaaT11B.1.258.70.001912
ORF3a67K67NaaGaaT11B.1.2840.013158
ORF3a67K67NaaGaaT11B.1.3260.007576
ORF3a67K67NaaGaaT11B.1.36.10.00114
ORF3a67K67NaaGaaT11B.1.3810.007812
ORF3a67K67NaaGaaT11B.1.3960.000706
ORF3a67K67NaaGaaT11B.1.4280.00102
ORF3a67K67NaaGaaT11B.1.4560.003268
ORF3a67K67NaaGaaT11B.1.5420.03125
ORF3a67K67NaaGaaT11B.1.5650.00081
ORF3a67K67NaaGaaT11B.1.5750.000303
ORF3a67K67NaaGaaT11B.1.5760.000907
ORF3a67K67NaaGaaT11B.1.5880.00091
ORF3a67K67NaaGaaT11B.1.6120.002653
ORF3a67K67NaaGaaT11B.1.6230.000536
ORF3a67K67NaaGaaT11B.1.9.40.006135
ORF3a67K67NaaGaaT11B.1.930.000934

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.