CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 65 & Codon = ctA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a65L65LsynctCctA1137019640.17273525585-25587

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a65L65LctCctA196411370All0.000376
ORF3a65L65LctCctA13962166AY.40.002173
ORF3a65L65LctCctA961823B.1.1.70.000086
ORF3a65L65LctCctA6999AY.1030.000037
ORF3a65L65LctCctA27631B.1.20.000238
ORF3a65L65LctCctA19390AY.430.000084
ORF3a65L65LctCctA33303B.1.617.20.000124
ORF3a65L65LctCctA1278B.1.5260.000024
ORF3a65L65LctCctA36255B.1.4290.000847
ORF3a65L65LctCctA2219AY.330.000134
ORF3a65L65LctCctA17190P.10.000268
ORF3a65L65LctCctA4161B.1.1770.000053
ORF3a65L65LctCctA72152AY.250.000433
ORF3a65L65LctCctA1148AY.4.20.000022
ORF3a65L65LctCctA5120B.1.1600.000156
ORF3a65L65LctCctA7114B.10.000064
ORF3a65L65LctCctA14113AY.440.000085
ORF3a65L65LctCctA2112B.1.1.2220.000408
ORF3a65L65LctCctA184AY.1190.000035
ORF3a65L65LctCctA782AY.30.00007
ORF3a65L65LctCctA382B.1.10.000054
ORF3a65L65LctCctA368AY.470.000093
ORF3a65L65LctCctA761AY.390.000173
ORF3a65L65LctCctA5056B.1.6370.003654
ORF3a65L65LctCctA145B.1.2430.00007
ORF3a65L65LctCctA944AY.290.000142
ORF3a65L65LctCctA244C.370.000232
ORF3a65L65LctCctA3136AY.270.002006
ORF3a65L65LctCctA136AY.39.10.00004
ORF3a65L65LctCctA132B.1.5950.000261
ORF3a65L65LctCctA130AY.1020.000027
ORF3a65L65LctCctA130AY.90.000068
ORF3a65L65LctCctA226B.1.1.2320.00363
ORF3a65L65LctCctA319AY.230.000209
ORF3a65L65LctCctA116B.1.258.170.000104
ORF3a65L65LctCctA715AY.450.000852
ORF3a65L65LctCctA1515B.1.1.4200.015091
ORF3a65L65LctCctA1515B.1.1.4320.018987
ORF3a65L65LctCctA114AY.200.000039
ORF3a65L65LctCctA114AY.50.000021
ORF3a65L65LctCctA114B.1.2580.000067
ORF3a65L65LctCctA212B.1.617.10.000258
ORF3a65L65LctCctA111B.1.5250.000113
ORF3a65L65LctCctA110AY.1130.000142
ORF3a65L65LctCctA19P.20.000187
ORF3a65L65LctCctA28AY.420.00008
ORF3a65L65LctCctA18AY.610.000105
ORF3a65L65LctCctA18AY.9.20.000037
ORF3a65L65LctCctA47AY.160.001519
ORF3a65L65LctCctA37B.1.6210.000266
ORF3a65L65LctCctA15AY.980.000079
ORF3a65L65LctCctA44AY.46.50.000794
ORF3a65L65LctCctA14AY.99.20.000092
ORF3a65L65LctCctA34B.1.177.160.001993
ORF3a65L65LctCctA44B.1.2130.059701
ORF3a65L65LctCctA24C.260.014706
ORF3a65L65LctCctA14P.1.10.000318
ORF3a65L65LctCctA33AY.46.20.001906
ORF3a65L65LctCctA13AY.75.10.00018
ORF3a65L65LctCctA33AY.940.001328
ORF3a65L65LctCctA13AZ.20.000821
ORF3a65L65LctCctA13B.1.177.730.000566
ORF3a65L65LctCctA22AY.1180.000125
ORF3a65L65LctCctA12AY.1210.000135
ORF3a65L65LctCctA22AY.190.002281
ORF3a65L65LctCctA12AY.340.000097
ORF3a65L65LctCctA12AY.350.000233
ORF3a65L65LctCctA12B.1.1.3180.000302
ORF3a65L65LctCctA12B.1.3010.005917
ORF3a65L65LctCctA12B.1.36.290.000517
ORF3a65L65LctCctA11AY.1050.000643
ORF3a65L65LctCctA11AY.23.10.000417
ORF3a65L65LctCctA11AY.300.000396
ORF3a65L65LctCctA11B.1.1.4480.002033
ORF3a65L65LctCctA11B.1.1.5260.003546
ORF3a65L65LctCctA11B.1.1390.000733
ORF3a65L65LctCctA11B.1.177.210.000076
ORF3a65L65LctCctA11B.1.177.400.005155
ORF3a65L65LctCctA11B.1.3710.001122
ORF3a65L65LctCctA11B.40.002208
ORF3a65L65LctCctA11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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