CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 65

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a65L65LsynctCctT1137093370.82119625585-25587
ORF3a65L65LsynctCctA1137019640.17273525585-25587
ORF3a65L65LsynctCctG11370690.006068625585-25587
ORF3a65L65FnonsynCtcTtc252325170.99762225585-25587
ORF3a65L65FnonsynCtCTtT252360.0023781225585-25587
ORF3a65L65PnonsyncTccCc7537500.99601625585-25587
ORF3a65L65PnonsyncTCcCT75330.0039840625585-25587
ORF3a65L65InonsynCtcAtc467467125585-25587
ORF3a65L65VnonsynCtcGtc1621600.98765425585-25587
ORF3a65L65VnonsynCtCGtG16220.012345725585-25587
ORF3a65L65deldelCTC---5959125585-25587
ORF3a65L65HnonsyncTccAc58560.96551725585-25587
ORF3a65L65HnonsyncTCcAT5820.034482825585-25587
ORF3a65L65RnonsyncTccGc3838125585-25587
ORF3a65L65YnonsynCTcTAc530.625585-25587
ORF3a65L65YnonsynCTCTAT520.425585-25587
ORF3a65L65QnonsyncTCcAA44125585-25587
ORF3a65L65del1delctCct-320.66666725585-25587
ORF3a65L65del1delCtc-tc310.33333325585-25587
ORF3a65L65del2delcTCc--22125585-25587
ORF3a65L65KnonsynCTCAAA22125585-25587
ORF3a65L65SnonsynCTCTCA11125585-25587

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a65L65LctCctT933711370All0.001786
ORF3a65L65LctCctA196411370All0.000376
ORF3a65L65LctCctG6911370All0.000013
ORF3a65L65FCtcTtc25172523All0.000481
ORF3a65L65FCtCTtT62523All0.000001
ORF3a65L65LctCctA13962166AY.40.002173
ORF3a65L65LctCctT7672166AY.40.001194
ORF3a65L65LctCctG32166AY.40.000005
ORF3a65L65LctCctT17251823B.1.1.70.001544
ORF3a65L65LctCctA961823B.1.1.70.000086
ORF3a65L65LctCctG21823B.1.1.70.000002
ORF3a65L65LctCctT992999AY.1030.006159
ORF3a65L65LctCctA6999AY.1030.000037
ORF3a65L65LctCctG1999AY.1030.000006
ORF3a65L65PcTccCc750753All0.000143
ORF3a65L65PcTCcCT3753All0.000001
ORF3a65L65LctCctT588631B.1.20.005178
ORF3a65L65LctCctA27631B.1.20.000238
ORF3a65L65LctCctG16631B.1.20.000141
ORF3a65L65ICtcAtc467467All0.000089
ORF3a65L65FCtcTtc424425AY.40.00066
ORF3a65L65FCtCTtT1425AY.40.000002
ORF3a65L65FCtcTtc395396B.1.1.70.000354
ORF3a65L65FCtCTtT1396B.1.1.70.000001
ORF3a65L65LctCctT369390AY.430.001635
ORF3a65L65LctCctA19390AY.430.000084
ORF3a65L65LctCctG2390AY.430.000009
ORF3a65L65LctCctT270303B.1.617.20.001017
ORF3a65L65LctCctA33303B.1.617.20.000124
ORF3a65L65LctCctT289289B.1.4270.014594
ORF3a65L65LctCctT277278B.1.5260.006511
ORF3a65L65LctCctA1278B.1.5260.000024
ORF3a65L65FCtcTtc276276B.1.20.00243
ORF3a65L65LctCctT219255B.1.4290.005153
ORF3a65L65LctCctA36255B.1.4290.000847
ORF3a65L65PcTccCc230230B.1.1.70.000206
ORF3a65L65LctCctT217219AY.330.014491
ORF3a65L65LctCctA2219AY.330.000134
ORF3a65L65LctCctT194194B.1.160.150.960396
ORF3a65L65LctCctT173190P.10.002725
ORF3a65L65LctCctA17190P.10.000268
ORF3a65L65LctCctT175175B.1.1.5190.006949
ORF3a65L65VCtcGtc160162All0.000031
ORF3a65L65VCtCGtG2162All0
ORF3a65L65LctCctT156161B.1.1770.002054
ORF3a65L65LctCctA4161B.1.1770.000053
ORF3a65L65LctCctG1161B.1.1770.000013
ORF3a65L65PcTccCc154154AY.40.00024
ORF3a65L65LctCctT79152AY.250.000475
ORF3a65L65LctCctA72152AY.250.000433
ORF3a65L65LctCctG1152AY.250.000006
ORF3a65L65LctCctT152152AY.540.014493
ORF3a65L65LctCctT147148AY.4.20.003188
ORF3a65L65LctCctA1148AY.4.20.000022
ORF3a65L65ICtcAtc133133B.1.1.70.000119
ORF3a65L65LctCctT115120B.1.1600.003587
ORF3a65L65LctCctA5120B.1.1600.000156
ORF3a65L65LctCctT107114B.10.00098
ORF3a65L65LctCctA7114B.10.000064
ORF3a65L65LctCctT98113AY.440.000597
ORF3a65L65LctCctA14113AY.440.000085
ORF3a65L65LctCctG1113AY.440.000006
ORF3a65L65LctCctT110112B.1.1.2220.02244
ORF3a65L65LctCctA2112B.1.1.2220.000408
ORF3a65L65FCtcTtc110110B.1.1600.003431
ORF3a65L65FCtcTtc9898B.1.617.20.000369
ORF3a65L65LctCctT9393AY.98.10.004504
ORF3a65L65FCtcTtc8484AY.1030.000522
ORF3a65L65LctCctT8384AY.1190.002931
ORF3a65L65LctCctA184AY.1190.000035
ORF3a65L65LctCctT7582AY.30.000746
ORF3a65L65LctCctA782AY.30.00007
ORF3a65L65LctCctT7982B.1.10.001433
ORF3a65L65LctCctA382B.1.10.000054
ORF3a65L65ICtcAtc7777AY.270.004983
ORF3a65L65FCtcTtc7171AY.430.000315
ORF3a65L65LctCctT6568AY.470.002022
ORF3a65L65LctCctA368AY.470.000093
ORF3a65L65FCtcTtc6868B.10.000623
ORF3a65L65LctCctT5461AY.390.001334
ORF3a65L65LctCctA761AY.390.000173
ORF3a65L65delCTC---5959All0.000011
ORF3a65L65LctCctT5959B.1.177.590.951613
ORF3a65L65HcTccAc5658All0.000011
ORF3a65L65HcTCcAT258All0
ORF3a65L65FCtcTtc5858AY.440.000353
ORF3a65L65LctCctA5056B.1.6370.003654
ORF3a65L65LctCctT656B.1.6370.000438
ORF3a65L65ICtcAtc5555AY.1030.000341
ORF3a65L65PcTccCc5252B.1.617.20.000196
ORF3a65L65VCtcGtc5151AY.430.000226
ORF3a65L65LctCctT5050B.1.3510.001486
ORF3a65L65PcTccCc4949AY.30.000487
ORF3a65L65LctCctT4747AY.1200.001747
ORF3a65L65FCtcTtc4646B.1.177.860.008439
ORF3a65L65LctCctT4445B.1.2430.003062
ORF3a65L65LctCctA145B.1.2430.00007
ORF3a65L65LctCctT3544AY.290.000552
ORF3a65L65LctCctA944AY.290.000142
ORF3a65L65LctCctT4444B.1.2210.003125
ORF3a65L65LctCctT4144C.370.004759
ORF3a65L65LctCctA244C.370.000232
ORF3a65L65LctCctG144C.370.000116
ORF3a65L65FCtcTtc4343AY.30.000428
ORF3a65L65PcTccCc4242AY.1000.001932
ORF3a65L65FCtcTtc4040AY.250.000241
ORF3a65L65FCtcTtc3939P.10.000614
ORF3a65L65RcTccGc3838All0.000007
ORF3a65L65LctCctT3838AY.3.10.00324
ORF3a65L65FCtcTtc3737AY.120.011694
ORF3a65L65FCtcTtc3737B.1.3510.0011
ORF3a65L65LctCctA3136AY.270.002006
ORF3a65L65LctCctT536AY.270.000324
ORF3a65L65LctCctT3536AY.39.10.001386
ORF3a65L65LctCctA136AY.39.10.00004
ORF3a65L65FCtcTtc3636B.1.10.000653
ORF3a65L65LctCctT3535B.1.1.3230.492958
ORF3a65L65ICtcAtc3434AY.40.000053
ORF3a65L65LctCctT3434P.1.150.0079
ORF3a65L65LctCctT3333B.1.1.2190.165
ORF3a65L65VCtcGtc3232B.1.1.70.000029
ORF3a65L65LctCctT3132B.1.5950.00809
ORF3a65L65LctCctA132B.1.5950.000261
ORF3a65L65LctCctT3131B.1.360.004523
ORF3a65L65LctCctT3131B.1.6280.010923
ORF3a65L65LctCctT2830AY.1020.000742
ORF3a65L65LctCctG130AY.1020.000027
ORF3a65L65LctCctA130AY.1020.000027
ORF3a65L65LctCctT2930AY.90.00196
ORF3a65L65LctCctA130AY.90.000068
ORF3a65L65LctCctT3030B.1.177.330.049342
ORF3a65L65ICtcAtc2929AY.260.000821
ORF3a65L65PcTccCc2929AY.440.000177
ORF3a65L65FCtcTtc2929B.1.360.004231
ORF3a65L65VCtcGtc2828AY.570.018373
ORF3a65L65FCtcTtc2828B.1.1770.000369
ORF3a65L65LctCctT2426B.1.1.2320.043557
ORF3a65L65LctCctA226B.1.1.2320.00363
ORF3a65L65LctCctG2226B.1.1.3060.009645
ORF3a65L65LctCctT426B.1.1.3060.001754
ORF3a65L65LctCctT2626B.1.1.3280.440678
ORF3a65L65LctCctT2424AY.120.007585
ORF3a65L65FCtcTtc2424AY.9.10.002009
ORF3a65L65LctCctT2424B.1.5170.010248
ORF3a65L65FCtcTtc2323AY.200.000894
ORF3a65L65LctCctT2323B.1.3690.00656
ORF3a65L65PcTccCc2323B.1.6210.002036
ORF3a65L65FCtcTtc2222AY.390.000544
ORF3a65L65FCtcTtc2222AY.7.20.012304
ORF3a65L65LctCctT2121B.1.2340.002771
ORF3a65L65LctCctT2121P.1.140.001004
ORF3a65L65PcTccCc2020AY.250.00012
ORF3a65L65FCtcTtc2020B.1.2100.042644
ORF3a65L65FCtcTtc2020B.1.5770.013746
ORF3a65L65LctCctT1519AY.230.001046
ORF3a65L65LctCctA319AY.230.000209
ORF3a65L65LctCctG119AY.230.00007
ORF3a65L65PcTccCc1919B.1.1.1600.452381
ORF3a65L65LctCctT1919B.1.177.810.003597
ORF3a65L65FCtcTtc1717AY.1020.000451
ORF3a65L65LctCctT1717AY.5.30.005735
ORF3a65L65PcTccCc1717B.1.2210.001208
ORF3a65L65LctCctT1516B.1.258.170.00156
ORF3a65L65LctCctA116B.1.258.170.000104
ORF3a65L65FCtcTtc1616B.1.6320.107383
ORF3a65L65LctCctT1616P.70.069869
ORF3a65L65PcTccCc1515AY.430.000066
ORF3a65L65LctCctT815AY.450.000973
ORF3a65L65LctCctA715AY.450.000852
ORF3a65L65LctCctT1415B.1.1.280.004357
ORF3a65L65LctCctG115B.1.1.280.000311
ORF3a65L65LctCctA1515B.1.1.4200.015091
ORF3a65L65LctCctA1515B.1.1.4320.018987
ORF3a65L65LctCctT1515C.160.015907
ORF3a65L65FCtcTtc1515P.1.140.000717
ORF3a65L65LctCctT1515Q.20.009202
ORF3a65L65LctCctT1314AY.200.000505
ORF3a65L65LctCctA114AY.200.000039
ORF3a65L65LctCctT1314AY.50.000268
ORF3a65L65LctCctA114AY.50.000021
ORF3a65L65LctCctT1314B.1.2580.000865
ORF3a65L65LctCctA114B.1.2580.000067
ORF3a65L65LctCctT1414B.1.5270.051852
ORF3a65L65FCtcTtc1414B.1.617.10.001806
ORF3a65L65ICtcAtc1313B.10.000119
ORF3a65L65delCTC---1313B.1.1.70.000012
ORF3a65L65HcTccAc1313B.1.1.70.000012
ORF3a65L65FCtcTtc1212AY.1050.007717
ORF3a65L65LctCctT1212AY.4.30.010101
ORF3a65L65LctCctT1212AY.710.005701
ORF3a65L65LctCctT1212B.1.1.2940.01519
ORF3a65L65FCtcTtc1212B.1.1.5190.000477
ORF3a65L65LctCctT1012B.1.617.10.00129
ORF3a65L65LctCctA212B.1.617.10.000258
ORF3a65L65FCtcTtc1212C.370.001393
ORF3a65L65FCtcTtc1111AY.230.000767
ORF3a65L65LctCctG1011AY.740.001156
ORF3a65L65LctCctT111AY.740.000116
ORF3a65L65LctCctT1111AY.950.008371
ORF3a65L65LctCctT1111B.1.1.10.003594
ORF3a65L65LctCctT1111B.1.1.2910.008166
ORF3a65L65FCtcTtc1111B.1.4290.000259
ORF3a65L65LctCctT1011B.1.5250.001132
ORF3a65L65LctCctA111B.1.5250.000113
ORF3a65L65LctCctT1111B.1.5960.000959
ORF3a65L65FCtcTtc1111B.1.6210.000974
ORF3a65L65LctCctT1010AY.1000.00046
ORF3a65L65LctCctT910AY.1130.001282
ORF3a65L65LctCctA110AY.1130.000142
ORF3a65L65FCtcTtc1010AY.39.10.000396
ORF3a65L65VCtcGtc1010AY.40.000016
ORF3a65L65FCtcTtc1010B.1.1.3170.004117
ORF3a65L65LctCctT1010B.1.4780.117647
ORF3a65L65HcTccAc1010B.1.617.20.000038
ORF3a65L65VCtcGtc99AY.250.000054
ORF3a65L65FCtcTtc99AY.60.00037
ORF3a65L65LctCctT99AY.620.003922
ORF3a65L65FCtcTtc99AY.99.20.000829
ORF3a65L65PcTccCc99B.1.10.000163
ORF3a65L65LctCctT89P.20.001493
ORF3a65L65LctCctA19P.20.000187
ORF3a65L65LctCctT99Q.10.001137
ORF3a65L65LctCctT88AY.1170.000676
ORF3a65L65RcTccGc88AY.250.000048
ORF3a65L65LctCctT88AY.260.000226
ORF3a65L65ICtcAtc88AY.330.000534
ORF3a65L65LctCctT68AY.420.000241
ORF3a65L65LctCctA28AY.420.00008
ORF3a65L65LctCctT78AY.610.000733
ORF3a65L65LctCctA18AY.610.000105
ORF3a65L65LctCctT88AY.760.038647
ORF3a65L65LctCctT78AY.9.20.000257
ORF3a65L65LctCctA18AY.9.20.000037
ORF3a65L65FCtcTtc88B.1.1.2770.00607
ORF3a65L65LctCctT88B.1.1.370.001543
ORF3a65L65LctCctT88B.1.1.390.004077
ORF3a65L65FCtcTtc88B.1.258.170.000832
ORF3a65L65LctCctT88B.1.564.10.012618
ORF3a65L65PcTccCc570.277778
ORF3a65L65PcTCcCT270.111111
ORF3a65L65FCtcTtc77AY.1190.000247
ORF3a65L65LctCctA47AY.160.001519
ORF3a65L65LctCctT37AY.160.001139
ORF3a65L65FCtcTtc77AY.330.000467
ORF3a65L65ICtcAtc77AY.430.000031
ORF3a65L65HcTccAc77B.10.000064
ORF3a65L65LctCctT57B.1.1.2140.000277
ORF3a65L65LctCctG27B.1.1.2140.000111
ORF3a65L65ICtcAtc77B.1.1.3490.072165
ORF3a65L65FCtcTtc77B.1.36.80.007
ORF3a65L65LctCctT77B.1.4040.009115
ORF3a65L65LctCctT77B.1.4220.005686
ORF3a65L65ICtcAtc77B.1.617.20.000026
ORF3a65L65VCtcGtc77B.1.617.20.000026
ORF3a65L65HcTccAc77B.1.6210.00062
ORF3a65L65LctCctT47B.1.6210.000354
ORF3a65L65LctCctA37B.1.6210.000266
ORF3a65L65PcTccCc77P.10.00011
ORF3a65L65LctCctT77Q.80.001154
ORF3a65L65FCtcTtc360.166667
ORF3a65L65FCtCTtT360.166667
ORF3a65L65FCtcTtc66AY.1000.000276
ORF3a65L65HcTccAc66AY.1030.000037
ORF3a65L65ICtcAtc66AY.250.000036
ORF3a65L65ICtcAtc66AY.390.000148
ORF3a65L65FCtcTtc66AY.470.000187
ORF3a65L65FCtcTtc66AY.50.000124
ORF3a65L65PcTccCc56B.10.000046
ORF3a65L65PcTCcCT16B.10.000009
ORF3a65L65ICtcAtc66B.1.1.2070.007092
ORF3a65L65ICtcAtc66B.1.1.2940.007595
ORF3a65L65LctCctT66B.1.1.330.002525
ORF3a65L65FCtcTtc66B.1.1.4340.002091
ORF3a65L65LctCctT66B.1.177.860.001101
ORF3a65L65LctCctT66B.1.2400.001293
ORF3a65L65LctCctT66B.1.2500.086957
ORF3a65L65FCtcTtc66B.1.2580.000399
ORF3a65L65LctCctT66B.1.36.10.006842
ORF3a65L65FCtcTtc66B.1.4270.000303
ORF3a65L65LctCctT66B.1.6090.002876
ORF3a65L65PcTccCc66P.1.140.000287
ORF3a65L65LctCctT550.277778
ORF3a65L65LctCctT55A.2.5.20.007862
ORF3a65L65YCTcTAc35All0.000001
ORF3a65L65YCTCTAT25All0
ORF3a65L65FCtcTtc55AY.1200.000186
ORF3a65L65delCTC---55AY.250.00003
ORF3a65L65FCtcTtc55AY.290.000079
ORF3a65L65LctCctT55AY.320.002662
ORF3a65L65PcTccCc55AY.39.10.000198
ORF3a65L65delCTC---55AY.40.000008
ORF3a65L65LctCctT55AY.46.40.000823
ORF3a65L65LctCctT55AY.60.000206
ORF3a65L65LctCctT55AY.750.00028
ORF3a65L65LctCctT45AY.840.00175
ORF3a65L65LctCctG15AY.840.000437
ORF3a65L65LctCctT45AY.980.000316
ORF3a65L65LctCctA15AY.980.000079
ORF3a65L65LctCctT55B0.000639
ORF3a65L65ICtcAtc55B.1.10.000091
ORF3a65L65LctCctT55B.1.1.1710.018382
ORF3a65L65FCtcTtc55B.1.1.4160.004525
ORF3a65L65RcTccGc55B.1.1.70.000004
ORF3a65L65delCTC---55B.1.1770.000066
ORF3a65L65ICtcAtc55B.1.2060.004078
ORF3a65L65FCtcTtc55B.1.36.100.023923
ORF3a65L65FCtcTtc55B.1.466.20.001956
ORF3a65L65HcTCcAT240.111111
ORF3a65L65YCTCTAT240.111111
ORF3a65L65YCTcTAc240.111111
ORF3a65L65HcTccAc240.111111
ORF3a65L65LctCctT44A0.001548
ORF3a65L65LctCctT44A.270.006623
ORF3a65L65QcTCcAA44All0.000001
ORF3a65L65FCtcTtc44AY.1130.00057
ORF3a65L65FCtcTtc44AY.1170.000338
ORF3a65L65HcTccAc44AY.1190.000141
ORF3a65L65ICtcAtc44AY.4.20.000087
ORF3a65L65RcTccGc44AY.430.000018
ORF3a65L65FCtcTtc44AY.460.000416
ORF3a65L65LctCctA44AY.46.50.000794
ORF3a65L65FCtcTtc44AY.740.000463
ORF3a65L65LctCctT34AY.99.20.000276
ORF3a65L65LctCctA14AY.99.20.000092
ORF3a65L65FCtcTtc44B.1.1.2220.000816
ORF3a65L65LctCctT44B.1.1.2840.00043
ORF3a65L65PcTccCc44B.1.1.2840.00043
ORF3a65L65LctCctT44B.1.1.3170.001647
ORF3a65L65PcTccCc44B.1.1770.000053
ORF3a65L65LctCctA34B.1.177.160.001993
ORF3a65L65LctCctG14B.1.177.160.000664
ORF3a65L65LctCctA44B.1.2130.059701
ORF3a65L65FCtcTtc44B.1.2430.000278
ORF3a65L65FCtcTtc44B.1.3110.001098
ORF3a65L65LctCctT44B.1.351.20.00121
ORF3a65L65FCtcTtc44B.1.3690.001141
ORF3a65L65FCtcTtc44B.1.4560.013072
ORF3a65L65LctCctT44B.1.5510.005161
ORF3a65L65RcTccGc44B.1.617.20.000015
ORF3a65L65FCtcTtc44B.1.6200.003784
ORF3a65L65LctCctA24C.260.014706
ORF3a65L65LctCctT24C.260.014706
ORF3a65L65LctCctT44D.20.0003
ORF3a65L65LctCctT44N.50.007067
ORF3a65L65LctCctT34P.1.10.000953
ORF3a65L65LctCctA14P.1.10.000318
ORF3a65L65FCtcTtc44P.1.170.000647
ORF3a65L65PcTccCc44P.1.40.003906
ORF3a65L65LctCctT44R.10.00036
ORF3a65L65LctCctT33A.2.50.001497
ORF3a65L65LctCctT33A.23.10.002113
ORF3a65L65del1ctCct-23All0
ORF3a65L65del1Ctc-tc13All0
ORF3a65L65VCtcGtc33AY.1000.000138
ORF3a65L65ICtcAtc33AY.1020.00008
ORF3a65L65LctCctT33AY.1090.002219
ORF3a65L65LctCctT33AY.1110.000549
ORF3a65L65LctCctT33AY.130.000483
ORF3a65L65HcTccAc33AY.230.000209
ORF3a65L65RcTccGc33AY.30.00003
ORF3a65L65ICtcAtc33AY.3.10.000256
ORF3a65L65LctCctT33AY.380.001498
ORF3a65L65RcTccGc33AY.40.000005
ORF3a65L65LctCctT33AY.4.50.000322
ORF3a65L65FCtcTtc33AY.400.002893
ORF3a65L65delCTC---33AY.430.000013
ORF3a65L65ICtcAtc33AY.440.000018
ORF3a65L65LctCctT33AY.460.000312
ORF3a65L65LctCctA33AY.46.20.001906
ORF3a65L65PcTccCc33AY.510.002727
ORF3a65L65FCtcTtc33AY.550.002752
ORF3a65L65ICtcAtc33AY.710.001425
ORF3a65L65LctCctT33AY.730.001996
ORF3a65L65ICtcAtc33AY.75.10.000541
ORF3a65L65LctCctT23AY.75.10.000361
ORF3a65L65LctCctA13AY.75.10.00018
ORF3a65L65FCtcTtc33AY.880.002653
ORF3a65L65FCtcTtc33AY.90.000203
ORF3a65L65LctCctT33AY.920.000862
ORF3a65L65LctCctT33AY.930.000819
ORF3a65L65LctCctA33AY.940.001328
ORF3a65L65LctCctT23AZ.20.001642
ORF3a65L65LctCctA13AZ.20.000821
ORF3a65L65delCTC---33B.10.000027
ORF3a65L65FCtcTtc33B.1.1.2140.000166
ORF3a65L65LctCctT33B.1.1.2410.006211
ORF3a65L65FCtcTtc33B.1.1.370.000579
ORF3a65L65LctCctT33B.1.1.3880.136364
ORF3a65L65LctCctT33B.1.177.100.002634
ORF3a65L65VCtcGtc33B.1.177.40.000633
ORF3a65L65LctCctT23B.1.177.730.001133
ORF3a65L65LctCctA13B.1.177.730.000566
ORF3a65L65ICtcAtc33B.1.20.000026
ORF3a65L65FCtcTtc33B.1.2210.000213
ORF3a65L65FCtcTtc33B.1.2390.003663
ORF3a65L65FCtcTtc23B.1.258.140.001961
ORF3a65L65FCtCTtT13B.1.258.140.00098
ORF3a65L65ICtcAtc33B.1.360.000438
ORF3a65L65PcTccCc33B.1.36.170.001482
ORF3a65L65LctCctT33B.1.5750.00091
ORF3a65L65delCTC---33B.1.617.20.000011
ORF3a65L65LctCctT33B.1.6190.002613
ORF3a65L65LctCctT33C.280.12
ORF3a65L65FCtcTtc33C.350.002322
ORF3a65L65LctCctT33C.36.30.001702
ORF3a65L65LctCctT33P.1.100.000808
ORF3a65L65FCtcTtc33P.1.160.001122
ORF3a65L65FCtcTtc33P.1.70.000958
ORF3a65L65FCtcTtc33Q.10.000379
ORF3a65L65FCtcTtc33R.10.00027
ORF3a65L65delCTC---33U.30.011583
ORF3a65L65LctCctT22A.20.001324
ORF3a65L65KCTCAAA22All0
ORF3a65L65del2cTCc--22All0
ORF3a65L65ICtcAtc22AY.1000.000092
ORF3a65L65VCtcGtc22AY.1020.000053
ORF3a65L65PcTccCc22AY.1030.000012
ORF3a65L65RcTccGc22AY.1030.000012
ORF3a65L65LctCctT22AY.1060.00067
ORF3a65L65LctCctT22AY.1070.000932
ORF3a65L65LctCctT22AY.1080.002205
ORF3a65L65LctCctT22AY.1100.000225
ORF3a65L65FCtcTtc22AY.1110.000366
ORF3a65L65LctCctA22AY.1180.000125
ORF3a65L65ICtcAtc22AY.1200.000074
ORF3a65L65FCtcTtc22AY.120.10.000642
ORF3a65L65FCtcTtc22AY.1210.000271
ORF3a65L65LctCctA12AY.1210.000135
ORF3a65L65LctCctT12AY.1210.000135
ORF3a65L65LctCctA22AY.190.002281
ORF3a65L65PcTccCc22AY.200.000078
ORF3a65L65FCtcTtc22AY.210.003795
ORF3a65L65FCtcTtc22AY.260.000057
ORF3a65L65FCtcTtc22AY.29.10.000441
ORF3a65L65VCtcGtc22AY.30.00002
ORF3a65L65FCtcTtc22AY.3.10.000171
ORF3a65L65LctCctT12AY.340.000097
ORF3a65L65LctCctA12AY.340.000097
ORF3a65L65LctCctT22AY.34.10.00102
ORF3a65L65LctCctT12AY.350.000233
ORF3a65L65LctCctA12AY.350.000233
ORF3a65L65FCtcTtc22AY.4.20.000043
ORF3a65L65FCtcTtc22AY.4.2.10.000298
ORF3a65L65FCtcTtc22AY.4.40.000818
ORF3a65L65delCTC---22AY.4.50.000215
ORF3a65L65VCtcGtc22AY.440.000012
ORF3a65L65FCtcTtc22AY.450.000243
ORF3a65L65LctCctT22AY.46.60.000144
ORF3a65L65PcTccCc22AY.46.60.000144
ORF3a65L65FCtcTtc22AY.540.000191
ORF3a65L65LctCctT22AY.550.001835
ORF3a65L65FCtcTtc22AY.570.001312
ORF3a65L65FCtcTtc22AY.610.00021
ORF3a65L65FCtcTtc22AY.620.000871
ORF3a65L65FCtcTtc22AY.750.000112
ORF3a65L65FCtcTtc22AY.75.10.000361
ORF3a65L65LctCctT22AY.9.10.000167
ORF3a65L65FCtcTtc22AY.9.20.000073
ORF3a65L65FCtcTtc22AY.920.000575
ORF3a65L65FCtcTtc22AY.940.000885
ORF3a65L65FCtcTtc22AY.98.10.000097
ORF3a65L65FCtcTtc22B0.000256
ORF3a65L65LctCctT22B.1.1.150.027027
ORF3a65L65LctCctT22B.1.1.1700.002494
ORF3a65L65LctCctT22B.1.1.2050.007435
ORF3a65L65LctCctT22B.1.1.2250.014388
ORF3a65L65LctCctT22B.1.1.250.001137
ORF3a65L65LctCctT22B.1.1.2770.001517
ORF3a65L65FCtcTtc22B.1.1.3060.000877
ORF3a65L65LctCctT22B.1.1.3120.003824
ORF3a65L65LctCctT12B.1.1.3180.000302
ORF3a65L65LctCctA12B.1.1.3180.000302
ORF3a65L65LctCctT22B.1.1.3240.105263
ORF3a65L65LctCctT22B.1.1.3480.001592
ORF3a65L65LctCctT22B.1.1.3720.001377
ORF3a65L65LctCctT22B.1.1.4160.00181
ORF3a65L65LctCctT22B.1.1.630.000772
ORF3a65L65LctCctT22B.1.1.700.000682
ORF3a65L65ICtcAtc22B.1.1770.000026
ORF3a65L65LctCctT22B.1.177.560.001335
ORF3a65L65PcTccCc22B.1.20.000018
ORF3a65L65FCtcTtc22B.1.214.40.018182
ORF3a65L65LctCctT22B.1.243.10.044444
ORF3a65L65LctCctA12B.1.3010.005917
ORF3a65L65LctCctT12B.1.3010.005917
ORF3a65L65FCtcTtc22B.1.351.30.001753
ORF3a65L65ICtcAtc22B.1.36.100.009569
ORF3a65L65LctCctT22B.1.36.220.002415
ORF3a65L65LctCctT12B.1.36.290.000517
ORF3a65L65LctCctA12B.1.36.290.000517
ORF3a65L65LctCctT22B.1.3770.009132
ORF3a65L65PcTccCc22B.1.4270.000101
ORF3a65L65LctCctT22B.1.4530.006472
ORF3a65L65LctCctT22B.1.4700.002809
ORF3a65L65LctCctT22B.1.5760.001813
ORF3a65L65LctCctT22B.1.621.10.001012
ORF3a65L65RcTccGc22B.1.6280.000705
ORF3a65L65ICtcAtc22B.1.6370.000146
ORF3a65L65LctCctT22B.120.012821
ORF3a65L65LctCctT22B.290.007018
ORF3a65L65LctCctT22B.30.001661
ORF3a65L65FCtcTtc22B.60.00182
ORF3a65L65LctCctT22B.60.00182
ORF3a65L65LctCctT22C.1.20.008511
ORF3a65L65LctCctT22C.230.011628
ORF3a65L65PcTccCc22C.370.000232
ORF3a65L65LctCctT22L.30.007092
ORF3a65L65ICtcAtc22P.10.000032
ORF3a65L65PcTccCc22P.1.60.003891
ORF3a65L65FCtcTtc22P.20.000373
ORF3a65L65FCtcTtc22P.30.00319
ORF3a65L65LctCctT22P.60.006289
ORF3a65L65LctCctT22Q.30.00029
ORF3a65L65FCtcTtc11A0.000387
ORF3a65L65LctCctT11A.10.000282
ORF3a65L65LctCctT11A.160.016129
ORF3a65L65LctCctT11A.2.40.003367
ORF3a65L65VCtcGtc11A.2.5.20.001572
ORF3a65L65LctCctT11A.280.002646
ORF3a65L65FCtcTtc11AA.50.016129
ORF3a65L65LctCctT11AD.20.000219
ORF3a65L65del2cTCc--11AD.20.000219
ORF3a65L65delCTC---11AH.30.003802
ORF3a65L65SCTCTCA11All0
ORF3a65L65LctCctT11AY.1010.00049
ORF3a65L65HcTccAc11AY.1020.000027
ORF3a65L65VCtcGtc11AY.1030.000006
ORF3a65L65LctCctA11AY.1050.000643
ORF3a65L65FCtcTtc11AY.1070.000466
ORF3a65L65FCtcTtc11AY.1100.000113
ORF3a65L65delCTC---11AY.1110.000183
ORF3a65L65LctCctT11AY.1140.000231
ORF3a65L65LctCctT11AY.1160.000287
ORF3a65L65PcTccCc11AY.1160.000287
ORF3a65L65LctCctT11AY.116.10.000311
ORF3a65L65ICtcAtc11AY.1170.000085
ORF3a65L65FCtcTtc11AY.1180.000063
ORF3a65L65PcTccCc11AY.1190.000035
ORF3a65L65delCTC---11AY.1200.000037
ORF3a65L65ICtcAtc11AY.1210.000135
ORF3a65L65ICtcAtc11AY.130.000161
ORF3a65L65LctCctG11AY.140.000088
ORF3a65L65LctCctT11AY.16.10.00047
ORF3a65L65delCTC---11AY.230.00007
ORF3a65L65LctCctA11AY.23.10.000417
ORF3a65L65VCtcGtc11AY.260.000028
ORF3a65L65PcTccCc11AY.280.00189
ORF3a65L65ICtcAtc11AY.290.000016
ORF3a65L65PcTccCc11AY.290.000016
ORF3a65L65LctCctT11AY.29.10.000221
ORF3a65L65LctCctA11AY.300.000396
ORF3a65L65PcTccCc11AY.360.000148
ORF3a65L65FCtcTtc11AY.360.000148
ORF3a65L65PcTccCc11AY.390.000025
ORF3a65L65delCTC---11AY.390.000025
ORF3a65L65HcTccAc11AY.390.000025
ORF3a65L65del1ctCct-11AY.40.000002
ORF3a65L65HcTccAc11AY.40.000002
ORF3a65L65PcTccCc11AY.4.20.000022
ORF3a65L65del2cTCc--11AY.4.20.000022
ORF3a65L65LctCctT11AY.4.40.000409
ORF3a65L65LctCctT11AY.410.000294
ORF3a65L65PcTccCc11AY.410.000294
ORF3a65L65YCTcTAc11AY.430.000004
ORF3a65L65del1Ctc-tc11AY.440.000006
ORF3a65L65SCTCTCA11AY.440.000006
ORF3a65L65LctCctT11AY.46.10.001027
ORF3a65L65PcTccCc11AY.46.20.000635
ORF3a65L65FCtcTtc11AY.46.50.000198
ORF3a65L65LctCctT11AY.480.000465
ORF3a65L65PcTccCc11AY.50.000021
ORF3a65L65FCtcTtc11AY.5.30.000337
ORF3a65L65LctCctT11AY.5.40.000277
ORF3a65L65HcTccAc11AY.5.40.000277
ORF3a65L65ICtcAtc11AY.530.000288
ORF3a65L65PcTccCc11AY.550.000917
ORF3a65L65LctCctT11AY.580.000907
ORF3a65L65ICtcAtc11AY.610.000105
ORF3a65L65PcTccCc11AY.620.000436
ORF3a65L65ICtcAtc11AY.620.000436
ORF3a65L65FCtcTtc11AY.640.000595
ORF3a65L65LctCctT11AY.640.000595
ORF3a65L65FCtcTtc11AY.650.000533
ORF3a65L65LctCctT11AY.650.000533
ORF3a65L65FCtcTtc11AY.670.000464
ORF3a65L65VCtCGtG11AY.670.000464
ORF3a65L65LctCctT11AY.680.000274
ORF3a65L65FCtcTtc11AY.690.000187
ORF3a65L65PcTccCc11AY.7.10.000113
ORF3a65L65LctCctT11AY.7.20.000559
ORF3a65L65PcTccCc11AY.700.000209
ORF3a65L65LctCctT11AY.700.000209
ORF3a65L65LctCctT11AY.770.001127
ORF3a65L65PcTccCc11AY.800.001129
ORF3a65L65LctCctT11AY.820.001357
ORF3a65L65LctCctT11AY.850.000427
ORF3a65L65delCTC---11AY.90.000068
ORF3a65L65VCtcGtc11AY.9.10.000084
ORF3a65L65VCtcGtc11AY.9.20.000037
ORF3a65L65FCtcTtc11AY.930.000273
ORF3a65L65FCtcTtc11AY.950.000761
ORF3a65L65FCtcTtc11AY.980.000079
ORF3a65L65PcTccCc11AY.98.10.000048
ORF3a65L65VCtCGtG11AY.990.001049
ORF3a65L65ICtcAtc11AY.99.10.001553
ORF3a65L65ICtcAtc11AY.99.20.000092
ORF3a65L65KCTCAAA11B.10.000009
ORF3a65L65QcTCcAA11B.10.000009
ORF3a65L65KCTCAAA11B.1.10.000018
ORF3a65L65VCtcGtc11B.1.10.000018
ORF3a65L65delCTC---11B.1.10.000018
ORF3a65L65QcTCcAA11B.1.10.000018
ORF3a65L65FCtcTtc11B.1.1.10.000327
ORF3a65L65QcTCcAA11B.1.1.1390.022727
ORF3a65L65LctCctT11B.1.1.1530.001095
ORF3a65L65LctCctT11B.1.1.1610.003534
ORF3a65L65LctCctT11B.1.1.1980.001468
ORF3a65L65LctCctT11B.1.1.2070.001182
ORF3a65L65ICtcAtc11B.1.1.2140.000055
ORF3a65L65ICtcAtc11B.1.1.2200.001859
ORF3a65L65PcTccCc11B.1.1.2220.000204
ORF3a65L65LctCctT11B.1.1.2310.003096
ORF3a65L65LctCctT11B.1.1.2540.011236
ORF3a65L65LctCctT11B.1.1.2610.008621
ORF3a65L65ICtcAtc11B.1.1.2630.001558
ORF3a65L65LctCctT11B.1.1.2690.001353
ORF3a65L65FCtcTtc11B.1.1.280.000311
ORF3a65L65FCtcTtc11B.1.1.2840.000107
ORF3a65L65LctCctT11B.1.1.2970.002237
ORF3a65L65PcTccCc11B.1.1.3060.000438
ORF3a65L65LctCctT11B.1.1.3110.000358
ORF3a65L65FCtcTtc11B.1.1.3160.000925
ORF3a65L65PcTccCc11B.1.1.3180.000302
ORF3a65L65FCtcTtc11B.1.1.3180.000302
ORF3a65L65FCtcTtc11B.1.1.330.000421
ORF3a65L65PcTccCc11B.1.1.340.013158
ORF3a65L65LctCctG11B.1.1.3400.045455
ORF3a65L65LctCctT11B.1.1.3450.043478
ORF3a65L65LctCctT11B.1.1.3470.018182
ORF3a65L65FCtcTtc11B.1.1.3690.000446
ORF3a65L65LctCctT11B.1.1.3690.000446
ORF3a65L65LctCctT11B.1.1.3890.006061
ORF3a65L65FCtcTtc11B.1.1.390.00051
ORF3a65L65FCtcTtc11B.1.1.3960.045455
ORF3a65L65LctCctT11B.1.1.3980.003226
ORF3a65L65LctCctT11B.1.1.40.002976
ORF3a65L65LctCctT11B.1.1.4090.002833
ORF3a65L65delCTC---11B.1.1.4090.002833
ORF3a65L65LctCctT11B.1.1.4330.001425
ORF3a65L65LctCctT11B.1.1.4340.000349
ORF3a65L65ICtcAtc11B.1.1.4480.002033
ORF3a65L65LctCctA11B.1.1.4480.002033
ORF3a65L65ICtcAtc11B.1.1.470.005348
ORF3a65L65FCtcTtc11B.1.1.500.000679
ORF3a65L65LctCctT11B.1.1.5180.006329
ORF3a65L65PcTccCc11B.1.1.5190.00004
ORF3a65L65LctCctT11B.1.1.5210.005348
ORF3a65L65LctCctA11B.1.1.5260.003546
ORF3a65L65FCtcTtc11B.1.1.530.013699
ORF3a65L65LctCctT11B.1.1.570.011494
ORF3a65L65FCtcTtc11B.1.1.80.003584
ORF3a65L65FCtcTtc11B.1.1270.002198
ORF3a65L65LctCctT11B.1.1280.000635
ORF3a65L65FCtcTtc11B.1.130.002375
ORF3a65L65LctCctA11B.1.1390.000733
ORF3a65L65LctCctT11B.1.1400.018868
ORF3a65L65LctCctT11B.1.1460.004237
ORF3a65L65PcTccCc11B.1.1600.000031
ORF3a65L65LctCctT11B.1.160.260.002421
ORF3a65L65delCTC---11B.1.160.70.002079
ORF3a65L65delCTC---11B.1.1610.017241
ORF3a65L65QcTCcAA11B.1.1770.000013
ORF3a65L65RcTccGc11B.1.1770.000013
ORF3a65L65LctCctT11B.1.177.120.000152
ORF3a65L65FCtcTtc11B.1.177.120.000152
ORF3a65L65FCtcTtc11B.1.177.200.001517
ORF3a65L65LctCctA11B.1.177.210.000076
ORF3a65L65ICtcAtc11B.1.177.210.000076
ORF3a65L65LctCctT11B.1.177.230.003236
ORF3a65L65LctCctT11B.1.177.310.011494
ORF3a65L65FCtcTtc11B.1.177.40.000211
ORF3a65L65LctCctA11B.1.177.400.005155
ORF3a65L65LctCctT11B.1.177.410.0025
ORF3a65L65LctCctT11B.1.177.500.004695
ORF3a65L65LctCctT11B.1.177.540.000606
ORF3a65L65LctCctT11B.1.177.600.000218
ORF3a65L65PcTccCc11B.1.177.690.001484
ORF3a65L65PcTccCc11B.1.177.810.000189
ORF3a65L65ICtcAtc11B.1.177.870.000728
ORF3a65L65LctCctT11B.1.177.870.000728
ORF3a65L65LctCctT11B.1.1890.004292
ORF3a65L65ICtcAtc11B.1.1940.04
ORF3a65L65VCtcGtc11B.1.20.000009
ORF3a65L65del1ctCct-11B.1.20.000009
ORF3a65L65LctCctT11B.1.2060.000816
ORF3a65L65ICtcAtc11B.1.2210.000071
ORF3a65L65LctCctT11B.1.2320.000537
ORF3a65L65ICtcAtc11B.1.2340.000132
ORF3a65L65VCtcGtc11B.1.2340.000132
ORF3a65L65FCtcTtc11B.1.2340.000132
ORF3a65L65VCtcGtc11B.1.2400.000216
ORF3a65L65PcTccCc11B.1.2430.00007
ORF3a65L65ICtcAtc11B.1.2580.000067
ORF3a65L65LctCctT11B.1.258.140.00098
ORF3a65L65FCtcTtc11B.1.258.220.002667
ORF3a65L65LctCctT11B.1.2600.003344
ORF3a65L65LctCctT11B.1.3110.000275
ORF3a65L65LctCctT11B.1.3460.001311
ORF3a65L65ICtcAtc11B.1.3510.00003
ORF3a65L65LctCctT11B.1.36.260.002857
ORF3a65L65PcTccCc11B.1.36.290.000517
ORF3a65L65RcTccGc11B.1.36.310.001751
ORF3a65L65LctCctT11B.1.36.360.000602
ORF3a65L65LctCctT11B.1.36.370.002778
ORF3a65L65PcTccCc11B.1.36.80.001
ORF3a65L65LctCctT11B.1.36.80.001
ORF3a65L65LctCctT11B.1.36.90.003215
ORF3a65L65LctCctA11B.1.3710.001122
ORF3a65L65LctCctT11B.1.3960.000706
ORF3a65L65FCtcTtc11B.1.3960.000706
ORF3a65L65LctCctT11B.1.4000.000429
ORF3a65L65FCtcTtc11B.1.4000.000429
ORF3a65L65FCtcTtc11B.1.4090.000781
ORF3a65L65delCTC---11B.1.4150.014286
ORF3a65L65FCtcTtc11B.1.4260.001009
ORF3a65L65PcTccCc11B.1.4290.000024
ORF3a65L65delCTC---11B.1.4290.000024
ORF3a65L65LctCctT11B.1.4330.003195
ORF3a65L65FCtcTtc11B.1.438.10.000107
ORF3a65L65delCTC---11B.1.4460.02
ORF3a65L65RcTccGc11B.1.4590.004082
ORF3a65L65FCtcTtc11B.1.4650.003802
ORF3a65L65LctCctT11B.1.4660.023256
ORF3a65L65LctCctT11B.1.466.20.000391
ORF3a65L65LctCctT11B.1.4680.005714
ORF3a65L65PcTccCc11B.1.4700.001404
ORF3a65L65LctCctT11B.1.4970.000315
ORF3a65L65FCtcTtc11B.1.4970.000315
ORF3a65L65LctCctT11B.1.5030.002488
ORF3a65L65FCtcTtc11B.1.5250.000113
ORF3a65L65RcTccGc11B.1.5260.000024
ORF3a65L65FCtcTtc11B.1.5260.000024
ORF3a65L65LctCctT11B.1.5600.00463
ORF3a65L65delCTC---11B.1.5610.000397
ORF3a65L65LctCctT11B.1.5610.000397
ORF3a65L65RcTccGc11B.1.5640.000426
ORF3a65L65FCtcTtc11B.1.5760.000907
ORF3a65L65LctCctT11B.1.5810.009434
ORF3a65L65LctCctT11B.1.5820.000491
ORF3a65L65FCtcTtc11B.1.5950.000261
ORF3a65L65LctCctT11B.1.595.10.005848
ORF3a65L65FCtcTtc11B.1.5960.000087
ORF3a65L65FCtcTtc11B.1.6050.005952
ORF3a65L65LctCctT11B.1.6060.006024
ORF3a65L65FCtcTtc11B.1.6090.000479
ORF3a65L65PcTccCc11B.1.617.10.000129
ORF3a65L65ICtcAtc11B.1.617.10.000129
ORF3a65L65LctCctT11B.1.6200.000946
ORF3a65L65VCtcGtc11B.1.6210.000089
ORF3a65L65FCtcTtc11B.1.621.10.000506
ORF3a65L65FCtcTtc11B.1.6230.000536
ORF3a65L65LctCctT11B.1.6250.002353
ORF3a65L65LctCctT11B.1.6270.00202
ORF3a65L65ICtcAtc11B.1.6280.000352
ORF3a65L65FCtcTtc11B.1.6300.005236
ORF3a65L65LctCctT11B.1.6360.006711
ORF3a65L65RcTccGc11B.1.6370.000073
ORF3a65L65delCTC---11B.1.6380.052632
ORF3a65L65LctCctT11B.1.780.008547
ORF3a65L65LctCctT11B.1.9.50.005682
ORF3a65L65FCtcTtc11B.1.930.000934
ORF3a65L65LctCctA11B.40.002208
ORF3a65L65delCTC---11B.400.000364
ORF3a65L65LctCctT11B.6.80.008264
ORF3a65L65LctCctT11C.360.000911
ORF3a65L65RcTccGc11C.370.000116
ORF3a65L65FCtcTtc11D.20.000075
ORF3a65L65LctCctT11D.50.004975
ORF3a65L65LctCctT11N.60.007092
ORF3a65L65VCtcGtc11P.10.000016
ORF3a65L65FCtcTtc11P.1.10.000318
ORF3a65L65ICtcAtc11P.1.10.000318
ORF3a65L65PcTccCc11P.1.10.000318
ORF3a65L65FCtcTtc11P.1.120.000484
ORF3a65L65delCTC---11P.1.150.000232
ORF3a65L65ICtcAtc11P.1.160.000374
ORF3a65L65LctCctT11P.30.001595
ORF3a65L65FCtcTtc11P.60.003145
ORF3a65L65ICtcAtc11Q.40.000455
ORF3a65L65LctCctT11Q.60.006623
ORF3a65L65LctCctA11W.40.001351