CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 65 | L65L | syn | ctC | ctT | 11370 | 9337 | 0.821196 | 25585-25587 | |
ORF3a | 65 | L65L | syn | ctC | ctA | 11370 | 1964 | 0.172735 | 25585-25587 | |
ORF3a | 65 | L65L | syn | ctC | ctG | 11370 | 69 | 0.0060686 | 25585-25587 | |
ORF3a | 65 | L65F | nonsyn | Ctc | Ttc | 2523 | 2517 | 0.997622 | 25585-25587 | |
ORF3a | 65 | L65F | nonsyn | CtC | TtT | 2523 | 6 | 0.00237812 | 25585-25587 | |
ORF3a | 65 | L65P | nonsyn | cTc | cCc | 753 | 750 | 0.996016 | 25585-25587 | |
ORF3a | 65 | L65P | nonsyn | cTC | cCT | 753 | 3 | 0.00398406 | 25585-25587 | |
ORF3a | 65 | L65I | nonsyn | Ctc | Atc | 467 | 467 | 1 | 25585-25587 | |
ORF3a | 65 | L65V | nonsyn | Ctc | Gtc | 162 | 160 | 0.987654 | 25585-25587 | |
ORF3a | 65 | L65V | nonsyn | CtC | GtG | 162 | 2 | 0.0123457 | 25585-25587 | |
ORF3a | 65 | L65del | del | CTC | --- | 59 | 59 | 1 | 25585-25587 | |
ORF3a | 65 | L65H | nonsyn | cTc | cAc | 58 | 56 | 0.965517 | 25585-25587 | |
ORF3a | 65 | L65H | nonsyn | cTC | cAT | 58 | 2 | 0.0344828 | 25585-25587 | |
ORF3a | 65 | L65R | nonsyn | cTc | cGc | 38 | 38 | 1 | 25585-25587 | |
ORF3a | 65 | L65Y | nonsyn | CTc | TAc | 5 | 3 | 0.6 | 25585-25587 | |
ORF3a | 65 | L65Y | nonsyn | CTC | TAT | 5 | 2 | 0.4 | 25585-25587 | |
ORF3a | 65 | L65Q | nonsyn | cTC | cAA | 4 | 4 | 1 | 25585-25587 | |
ORF3a | 65 | L65del1 | del | ctC | ct- | 3 | 2 | 0.666667 | 25585-25587 | |
ORF3a | 65 | L65del1 | del | Ctc | -tc | 3 | 1 | 0.333333 | 25585-25587 | |
ORF3a | 65 | L65del2 | del | cTC | c-- | 2 | 2 | 1 | 25585-25587 | |
ORF3a | 65 | L65K | nonsyn | CTC | AAA | 2 | 2 | 1 | 25585-25587 | |
ORF3a | 65 | L65S | nonsyn | CTC | TCA | 1 | 1 | 1 | 25585-25587 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 65 | L65L | ctC | ctT | 9337 | 11370 | All | 0.001786 |
ORF3a | 65 | L65L | ctC | ctA | 1964 | 11370 | All | 0.000376 |
ORF3a | 65 | L65L | ctC | ctG | 69 | 11370 | All | 0.000013 |
ORF3a | 65 | L65F | Ctc | Ttc | 2517 | 2523 | All | 0.000481 |
ORF3a | 65 | L65F | CtC | TtT | 6 | 2523 | All | 0.000001 |
ORF3a | 65 | L65L | ctC | ctA | 1396 | 2166 | AY.4 | 0.002173 |
ORF3a | 65 | L65L | ctC | ctT | 767 | 2166 | AY.4 | 0.001194 |
ORF3a | 65 | L65L | ctC | ctG | 3 | 2166 | AY.4 | 0.000005 |
ORF3a | 65 | L65L | ctC | ctT | 1725 | 1823 | B.1.1.7 | 0.001544 |
ORF3a | 65 | L65L | ctC | ctA | 96 | 1823 | B.1.1.7 | 0.000086 |
ORF3a | 65 | L65L | ctC | ctG | 2 | 1823 | B.1.1.7 | 0.000002 |
ORF3a | 65 | L65L | ctC | ctT | 992 | 999 | AY.103 | 0.006159 |
ORF3a | 65 | L65L | ctC | ctA | 6 | 999 | AY.103 | 0.000037 |
ORF3a | 65 | L65L | ctC | ctG | 1 | 999 | AY.103 | 0.000006 |
ORF3a | 65 | L65P | cTc | cCc | 750 | 753 | All | 0.000143 |
ORF3a | 65 | L65P | cTC | cCT | 3 | 753 | All | 0.000001 |
ORF3a | 65 | L65L | ctC | ctT | 588 | 631 | B.1.2 | 0.005178 |
ORF3a | 65 | L65L | ctC | ctA | 27 | 631 | B.1.2 | 0.000238 |
ORF3a | 65 | L65L | ctC | ctG | 16 | 631 | B.1.2 | 0.000141 |
ORF3a | 65 | L65I | Ctc | Atc | 467 | 467 | All | 0.000089 |
ORF3a | 65 | L65F | Ctc | Ttc | 424 | 425 | AY.4 | 0.00066 |
ORF3a | 65 | L65F | CtC | TtT | 1 | 425 | AY.4 | 0.000002 |
ORF3a | 65 | L65F | Ctc | Ttc | 395 | 396 | B.1.1.7 | 0.000354 |
ORF3a | 65 | L65F | CtC | TtT | 1 | 396 | B.1.1.7 | 0.000001 |
ORF3a | 65 | L65L | ctC | ctT | 369 | 390 | AY.43 | 0.001635 |
ORF3a | 65 | L65L | ctC | ctA | 19 | 390 | AY.43 | 0.000084 |
ORF3a | 65 | L65L | ctC | ctG | 2 | 390 | AY.43 | 0.000009 |
ORF3a | 65 | L65L | ctC | ctT | 270 | 303 | B.1.617.2 | 0.001017 |
ORF3a | 65 | L65L | ctC | ctA | 33 | 303 | B.1.617.2 | 0.000124 |
ORF3a | 65 | L65L | ctC | ctT | 289 | 289 | B.1.427 | 0.014594 |
ORF3a | 65 | L65L | ctC | ctT | 277 | 278 | B.1.526 | 0.006511 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 278 | B.1.526 | 0.000024 |
ORF3a | 65 | L65F | Ctc | Ttc | 276 | 276 | B.1.2 | 0.00243 |
ORF3a | 65 | L65L | ctC | ctT | 219 | 255 | B.1.429 | 0.005153 |
ORF3a | 65 | L65L | ctC | ctA | 36 | 255 | B.1.429 | 0.000847 |
ORF3a | 65 | L65P | cTc | cCc | 230 | 230 | B.1.1.7 | 0.000206 |
ORF3a | 65 | L65L | ctC | ctT | 217 | 219 | AY.33 | 0.014491 |
ORF3a | 65 | L65L | ctC | ctA | 2 | 219 | AY.33 | 0.000134 |
ORF3a | 65 | L65L | ctC | ctT | 194 | 194 | B.1.160.15 | 0.960396 |
ORF3a | 65 | L65L | ctC | ctT | 173 | 190 | P.1 | 0.002725 |
ORF3a | 65 | L65L | ctC | ctA | 17 | 190 | P.1 | 0.000268 |
ORF3a | 65 | L65L | ctC | ctT | 175 | 175 | B.1.1.519 | 0.006949 |
ORF3a | 65 | L65V | Ctc | Gtc | 160 | 162 | All | 0.000031 |
ORF3a | 65 | L65V | CtC | GtG | 2 | 162 | All | 0 |
ORF3a | 65 | L65L | ctC | ctT | 156 | 161 | B.1.177 | 0.002054 |
ORF3a | 65 | L65L | ctC | ctA | 4 | 161 | B.1.177 | 0.000053 |
ORF3a | 65 | L65L | ctC | ctG | 1 | 161 | B.1.177 | 0.000013 |
ORF3a | 65 | L65P | cTc | cCc | 154 | 154 | AY.4 | 0.00024 |
ORF3a | 65 | L65L | ctC | ctT | 79 | 152 | AY.25 | 0.000475 |
ORF3a | 65 | L65L | ctC | ctA | 72 | 152 | AY.25 | 0.000433 |
ORF3a | 65 | L65L | ctC | ctG | 1 | 152 | AY.25 | 0.000006 |
ORF3a | 65 | L65L | ctC | ctT | 152 | 152 | AY.54 | 0.014493 |
ORF3a | 65 | L65L | ctC | ctT | 147 | 148 | AY.4.2 | 0.003188 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 148 | AY.4.2 | 0.000022 |
ORF3a | 65 | L65I | Ctc | Atc | 133 | 133 | B.1.1.7 | 0.000119 |
ORF3a | 65 | L65L | ctC | ctT | 115 | 120 | B.1.160 | 0.003587 |
ORF3a | 65 | L65L | ctC | ctA | 5 | 120 | B.1.160 | 0.000156 |
ORF3a | 65 | L65L | ctC | ctT | 107 | 114 | B.1 | 0.00098 |
ORF3a | 65 | L65L | ctC | ctA | 7 | 114 | B.1 | 0.000064 |
ORF3a | 65 | L65L | ctC | ctT | 98 | 113 | AY.44 | 0.000597 |
ORF3a | 65 | L65L | ctC | ctA | 14 | 113 | AY.44 | 0.000085 |
ORF3a | 65 | L65L | ctC | ctG | 1 | 113 | AY.44 | 0.000006 |
ORF3a | 65 | L65L | ctC | ctT | 110 | 112 | B.1.1.222 | 0.02244 |
ORF3a | 65 | L65L | ctC | ctA | 2 | 112 | B.1.1.222 | 0.000408 |
ORF3a | 65 | L65F | Ctc | Ttc | 110 | 110 | B.1.160 | 0.003431 |
ORF3a | 65 | L65F | Ctc | Ttc | 98 | 98 | B.1.617.2 | 0.000369 |
ORF3a | 65 | L65L | ctC | ctT | 93 | 93 | AY.98.1 | 0.004504 |
ORF3a | 65 | L65F | Ctc | Ttc | 84 | 84 | AY.103 | 0.000522 |
ORF3a | 65 | L65L | ctC | ctT | 83 | 84 | AY.119 | 0.002931 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 84 | AY.119 | 0.000035 |
ORF3a | 65 | L65L | ctC | ctT | 75 | 82 | AY.3 | 0.000746 |
ORF3a | 65 | L65L | ctC | ctA | 7 | 82 | AY.3 | 0.00007 |
ORF3a | 65 | L65L | ctC | ctT | 79 | 82 | B.1.1 | 0.001433 |
ORF3a | 65 | L65L | ctC | ctA | 3 | 82 | B.1.1 | 0.000054 |
ORF3a | 65 | L65I | Ctc | Atc | 77 | 77 | AY.27 | 0.004983 |
ORF3a | 65 | L65F | Ctc | Ttc | 71 | 71 | AY.43 | 0.000315 |
ORF3a | 65 | L65L | ctC | ctT | 65 | 68 | AY.47 | 0.002022 |
ORF3a | 65 | L65L | ctC | ctA | 3 | 68 | AY.47 | 0.000093 |
ORF3a | 65 | L65F | Ctc | Ttc | 68 | 68 | B.1 | 0.000623 |
ORF3a | 65 | L65L | ctC | ctT | 54 | 61 | AY.39 | 0.001334 |
ORF3a | 65 | L65L | ctC | ctA | 7 | 61 | AY.39 | 0.000173 |
ORF3a | 65 | L65del | CTC | --- | 59 | 59 | All | 0.000011 |
ORF3a | 65 | L65L | ctC | ctT | 59 | 59 | B.1.177.59 | 0.951613 |
ORF3a | 65 | L65H | cTc | cAc | 56 | 58 | All | 0.000011 |
ORF3a | 65 | L65H | cTC | cAT | 2 | 58 | All | 0 |
ORF3a | 65 | L65F | Ctc | Ttc | 58 | 58 | AY.44 | 0.000353 |
ORF3a | 65 | L65L | ctC | ctA | 50 | 56 | B.1.637 | 0.003654 |
ORF3a | 65 | L65L | ctC | ctT | 6 | 56 | B.1.637 | 0.000438 |
ORF3a | 65 | L65I | Ctc | Atc | 55 | 55 | AY.103 | 0.000341 |
ORF3a | 65 | L65P | cTc | cCc | 52 | 52 | B.1.617.2 | 0.000196 |
ORF3a | 65 | L65V | Ctc | Gtc | 51 | 51 | AY.43 | 0.000226 |
ORF3a | 65 | L65L | ctC | ctT | 50 | 50 | B.1.351 | 0.001486 |
ORF3a | 65 | L65P | cTc | cCc | 49 | 49 | AY.3 | 0.000487 |
ORF3a | 65 | L65L | ctC | ctT | 47 | 47 | AY.120 | 0.001747 |
ORF3a | 65 | L65F | Ctc | Ttc | 46 | 46 | B.1.177.86 | 0.008439 |
ORF3a | 65 | L65L | ctC | ctT | 44 | 45 | B.1.243 | 0.003062 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 45 | B.1.243 | 0.00007 |
ORF3a | 65 | L65L | ctC | ctT | 35 | 44 | AY.29 | 0.000552 |
ORF3a | 65 | L65L | ctC | ctA | 9 | 44 | AY.29 | 0.000142 |
ORF3a | 65 | L65L | ctC | ctT | 44 | 44 | B.1.221 | 0.003125 |
ORF3a | 65 | L65L | ctC | ctT | 41 | 44 | C.37 | 0.004759 |
ORF3a | 65 | L65L | ctC | ctA | 2 | 44 | C.37 | 0.000232 |
ORF3a | 65 | L65L | ctC | ctG | 1 | 44 | C.37 | 0.000116 |
ORF3a | 65 | L65F | Ctc | Ttc | 43 | 43 | AY.3 | 0.000428 |
ORF3a | 65 | L65P | cTc | cCc | 42 | 42 | AY.100 | 0.001932 |
ORF3a | 65 | L65F | Ctc | Ttc | 40 | 40 | AY.25 | 0.000241 |
ORF3a | 65 | L65F | Ctc | Ttc | 39 | 39 | P.1 | 0.000614 |
ORF3a | 65 | L65R | cTc | cGc | 38 | 38 | All | 0.000007 |
ORF3a | 65 | L65L | ctC | ctT | 38 | 38 | AY.3.1 | 0.00324 |
ORF3a | 65 | L65F | Ctc | Ttc | 37 | 37 | AY.12 | 0.011694 |
ORF3a | 65 | L65F | Ctc | Ttc | 37 | 37 | B.1.351 | 0.0011 |
ORF3a | 65 | L65L | ctC | ctA | 31 | 36 | AY.27 | 0.002006 |
ORF3a | 65 | L65L | ctC | ctT | 5 | 36 | AY.27 | 0.000324 |
ORF3a | 65 | L65L | ctC | ctT | 35 | 36 | AY.39.1 | 0.001386 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 36 | AY.39.1 | 0.00004 |
ORF3a | 65 | L65F | Ctc | Ttc | 36 | 36 | B.1.1 | 0.000653 |
ORF3a | 65 | L65L | ctC | ctT | 35 | 35 | B.1.1.323 | 0.492958 |
ORF3a | 65 | L65I | Ctc | Atc | 34 | 34 | AY.4 | 0.000053 |
ORF3a | 65 | L65L | ctC | ctT | 34 | 34 | P.1.15 | 0.0079 |
ORF3a | 65 | L65L | ctC | ctT | 33 | 33 | B.1.1.219 | 0.165 |
ORF3a | 65 | L65V | Ctc | Gtc | 32 | 32 | B.1.1.7 | 0.000029 |
ORF3a | 65 | L65L | ctC | ctT | 31 | 32 | B.1.595 | 0.00809 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 32 | B.1.595 | 0.000261 |
ORF3a | 65 | L65L | ctC | ctT | 31 | 31 | B.1.36 | 0.004523 |
ORF3a | 65 | L65L | ctC | ctT | 31 | 31 | B.1.628 | 0.010923 |
ORF3a | 65 | L65L | ctC | ctT | 28 | 30 | AY.102 | 0.000742 |
ORF3a | 65 | L65L | ctC | ctG | 1 | 30 | AY.102 | 0.000027 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 30 | AY.102 | 0.000027 |
ORF3a | 65 | L65L | ctC | ctT | 29 | 30 | AY.9 | 0.00196 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 30 | AY.9 | 0.000068 |
ORF3a | 65 | L65L | ctC | ctT | 30 | 30 | B.1.177.33 | 0.049342 |
ORF3a | 65 | L65I | Ctc | Atc | 29 | 29 | AY.26 | 0.000821 |
ORF3a | 65 | L65P | cTc | cCc | 29 | 29 | AY.44 | 0.000177 |
ORF3a | 65 | L65F | Ctc | Ttc | 29 | 29 | B.1.36 | 0.004231 |
ORF3a | 65 | L65V | Ctc | Gtc | 28 | 28 | AY.57 | 0.018373 |
ORF3a | 65 | L65F | Ctc | Ttc | 28 | 28 | B.1.177 | 0.000369 |
ORF3a | 65 | L65L | ctC | ctT | 24 | 26 | B.1.1.232 | 0.043557 |
ORF3a | 65 | L65L | ctC | ctA | 2 | 26 | B.1.1.232 | 0.00363 |
ORF3a | 65 | L65L | ctC | ctG | 22 | 26 | B.1.1.306 | 0.009645 |
ORF3a | 65 | L65L | ctC | ctT | 4 | 26 | B.1.1.306 | 0.001754 |
ORF3a | 65 | L65L | ctC | ctT | 26 | 26 | B.1.1.328 | 0.440678 |
ORF3a | 65 | L65L | ctC | ctT | 24 | 24 | AY.12 | 0.007585 |
ORF3a | 65 | L65F | Ctc | Ttc | 24 | 24 | AY.9.1 | 0.002009 |
ORF3a | 65 | L65L | ctC | ctT | 24 | 24 | B.1.517 | 0.010248 |
ORF3a | 65 | L65F | Ctc | Ttc | 23 | 23 | AY.20 | 0.000894 |
ORF3a | 65 | L65L | ctC | ctT | 23 | 23 | B.1.369 | 0.00656 |
ORF3a | 65 | L65P | cTc | cCc | 23 | 23 | B.1.621 | 0.002036 |
ORF3a | 65 | L65F | Ctc | Ttc | 22 | 22 | AY.39 | 0.000544 |
ORF3a | 65 | L65F | Ctc | Ttc | 22 | 22 | AY.7.2 | 0.012304 |
ORF3a | 65 | L65L | ctC | ctT | 21 | 21 | B.1.234 | 0.002771 |
ORF3a | 65 | L65L | ctC | ctT | 21 | 21 | P.1.14 | 0.001004 |
ORF3a | 65 | L65P | cTc | cCc | 20 | 20 | AY.25 | 0.00012 |
ORF3a | 65 | L65F | Ctc | Ttc | 20 | 20 | B.1.210 | 0.042644 |
ORF3a | 65 | L65F | Ctc | Ttc | 20 | 20 | B.1.577 | 0.013746 |
ORF3a | 65 | L65L | ctC | ctT | 15 | 19 | AY.23 | 0.001046 |
ORF3a | 65 | L65L | ctC | ctA | 3 | 19 | AY.23 | 0.000209 |
ORF3a | 65 | L65L | ctC | ctG | 1 | 19 | AY.23 | 0.00007 |
ORF3a | 65 | L65P | cTc | cCc | 19 | 19 | B.1.1.160 | 0.452381 |
ORF3a | 65 | L65L | ctC | ctT | 19 | 19 | B.1.177.81 | 0.003597 |
ORF3a | 65 | L65F | Ctc | Ttc | 17 | 17 | AY.102 | 0.000451 |
ORF3a | 65 | L65L | ctC | ctT | 17 | 17 | AY.5.3 | 0.005735 |
ORF3a | 65 | L65P | cTc | cCc | 17 | 17 | B.1.221 | 0.001208 |
ORF3a | 65 | L65L | ctC | ctT | 15 | 16 | B.1.258.17 | 0.00156 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 16 | B.1.258.17 | 0.000104 |
ORF3a | 65 | L65F | Ctc | Ttc | 16 | 16 | B.1.632 | 0.107383 |
ORF3a | 65 | L65L | ctC | ctT | 16 | 16 | P.7 | 0.069869 |
ORF3a | 65 | L65P | cTc | cCc | 15 | 15 | AY.43 | 0.000066 |
ORF3a | 65 | L65L | ctC | ctT | 8 | 15 | AY.45 | 0.000973 |
ORF3a | 65 | L65L | ctC | ctA | 7 | 15 | AY.45 | 0.000852 |
ORF3a | 65 | L65L | ctC | ctT | 14 | 15 | B.1.1.28 | 0.004357 |
ORF3a | 65 | L65L | ctC | ctG | 1 | 15 | B.1.1.28 | 0.000311 |
ORF3a | 65 | L65L | ctC | ctA | 15 | 15 | B.1.1.420 | 0.015091 |
ORF3a | 65 | L65L | ctC | ctA | 15 | 15 | B.1.1.432 | 0.018987 |
ORF3a | 65 | L65L | ctC | ctT | 15 | 15 | C.16 | 0.015907 |
ORF3a | 65 | L65F | Ctc | Ttc | 15 | 15 | P.1.14 | 0.000717 |
ORF3a | 65 | L65L | ctC | ctT | 15 | 15 | Q.2 | 0.009202 |
ORF3a | 65 | L65L | ctC | ctT | 13 | 14 | AY.20 | 0.000505 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 14 | AY.20 | 0.000039 |
ORF3a | 65 | L65L | ctC | ctT | 13 | 14 | AY.5 | 0.000268 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 14 | AY.5 | 0.000021 |
ORF3a | 65 | L65L | ctC | ctT | 13 | 14 | B.1.258 | 0.000865 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 14 | B.1.258 | 0.000067 |
ORF3a | 65 | L65L | ctC | ctT | 14 | 14 | B.1.527 | 0.051852 |
ORF3a | 65 | L65F | Ctc | Ttc | 14 | 14 | B.1.617.1 | 0.001806 |
ORF3a | 65 | L65I | Ctc | Atc | 13 | 13 | B.1 | 0.000119 |
ORF3a | 65 | L65del | CTC | --- | 13 | 13 | B.1.1.7 | 0.000012 |
ORF3a | 65 | L65H | cTc | cAc | 13 | 13 | B.1.1.7 | 0.000012 |
ORF3a | 65 | L65F | Ctc | Ttc | 12 | 12 | AY.105 | 0.007717 |
ORF3a | 65 | L65L | ctC | ctT | 12 | 12 | AY.4.3 | 0.010101 |
ORF3a | 65 | L65L | ctC | ctT | 12 | 12 | AY.71 | 0.005701 |
ORF3a | 65 | L65L | ctC | ctT | 12 | 12 | B.1.1.294 | 0.01519 |
ORF3a | 65 | L65F | Ctc | Ttc | 12 | 12 | B.1.1.519 | 0.000477 |
ORF3a | 65 | L65L | ctC | ctT | 10 | 12 | B.1.617.1 | 0.00129 |
ORF3a | 65 | L65L | ctC | ctA | 2 | 12 | B.1.617.1 | 0.000258 |
ORF3a | 65 | L65F | Ctc | Ttc | 12 | 12 | C.37 | 0.001393 |
ORF3a | 65 | L65F | Ctc | Ttc | 11 | 11 | AY.23 | 0.000767 |
ORF3a | 65 | L65L | ctC | ctG | 10 | 11 | AY.74 | 0.001156 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 11 | AY.74 | 0.000116 |
ORF3a | 65 | L65L | ctC | ctT | 11 | 11 | AY.95 | 0.008371 |
ORF3a | 65 | L65L | ctC | ctT | 11 | 11 | B.1.1.1 | 0.003594 |
ORF3a | 65 | L65L | ctC | ctT | 11 | 11 | B.1.1.291 | 0.008166 |
ORF3a | 65 | L65F | Ctc | Ttc | 11 | 11 | B.1.429 | 0.000259 |
ORF3a | 65 | L65L | ctC | ctT | 10 | 11 | B.1.525 | 0.001132 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 11 | B.1.525 | 0.000113 |
ORF3a | 65 | L65L | ctC | ctT | 11 | 11 | B.1.596 | 0.000959 |
ORF3a | 65 | L65F | Ctc | Ttc | 11 | 11 | B.1.621 | 0.000974 |
ORF3a | 65 | L65L | ctC | ctT | 10 | 10 | AY.100 | 0.00046 |
ORF3a | 65 | L65L | ctC | ctT | 9 | 10 | AY.113 | 0.001282 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 10 | AY.113 | 0.000142 |
ORF3a | 65 | L65F | Ctc | Ttc | 10 | 10 | AY.39.1 | 0.000396 |
ORF3a | 65 | L65V | Ctc | Gtc | 10 | 10 | AY.4 | 0.000016 |
ORF3a | 65 | L65F | Ctc | Ttc | 10 | 10 | B.1.1.317 | 0.004117 |
ORF3a | 65 | L65L | ctC | ctT | 10 | 10 | B.1.478 | 0.117647 |
ORF3a | 65 | L65H | cTc | cAc | 10 | 10 | B.1.617.2 | 0.000038 |
ORF3a | 65 | L65V | Ctc | Gtc | 9 | 9 | AY.25 | 0.000054 |
ORF3a | 65 | L65F | Ctc | Ttc | 9 | 9 | AY.6 | 0.00037 |
ORF3a | 65 | L65L | ctC | ctT | 9 | 9 | AY.62 | 0.003922 |
ORF3a | 65 | L65F | Ctc | Ttc | 9 | 9 | AY.99.2 | 0.000829 |
ORF3a | 65 | L65P | cTc | cCc | 9 | 9 | B.1.1 | 0.000163 |
ORF3a | 65 | L65L | ctC | ctT | 8 | 9 | P.2 | 0.001493 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 9 | P.2 | 0.000187 |
ORF3a | 65 | L65L | ctC | ctT | 9 | 9 | Q.1 | 0.001137 |
ORF3a | 65 | L65L | ctC | ctT | 8 | 8 | AY.117 | 0.000676 |
ORF3a | 65 | L65R | cTc | cGc | 8 | 8 | AY.25 | 0.000048 |
ORF3a | 65 | L65L | ctC | ctT | 8 | 8 | AY.26 | 0.000226 |
ORF3a | 65 | L65I | Ctc | Atc | 8 | 8 | AY.33 | 0.000534 |
ORF3a | 65 | L65L | ctC | ctT | 6 | 8 | AY.42 | 0.000241 |
ORF3a | 65 | L65L | ctC | ctA | 2 | 8 | AY.42 | 0.00008 |
ORF3a | 65 | L65L | ctC | ctT | 7 | 8 | AY.61 | 0.000733 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 8 | AY.61 | 0.000105 |
ORF3a | 65 | L65L | ctC | ctT | 8 | 8 | AY.76 | 0.038647 |
ORF3a | 65 | L65L | ctC | ctT | 7 | 8 | AY.9.2 | 0.000257 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 8 | AY.9.2 | 0.000037 |
ORF3a | 65 | L65F | Ctc | Ttc | 8 | 8 | B.1.1.277 | 0.00607 |
ORF3a | 65 | L65L | ctC | ctT | 8 | 8 | B.1.1.37 | 0.001543 |
ORF3a | 65 | L65L | ctC | ctT | 8 | 8 | B.1.1.39 | 0.004077 |
ORF3a | 65 | L65F | Ctc | Ttc | 8 | 8 | B.1.258.17 | 0.000832 |
ORF3a | 65 | L65L | ctC | ctT | 8 | 8 | B.1.564.1 | 0.012618 |
ORF3a | 65 | L65P | cTc | cCc | 5 | 7 | 0.277778 | |
ORF3a | 65 | L65P | cTC | cCT | 2 | 7 | 0.111111 | |
ORF3a | 65 | L65F | Ctc | Ttc | 7 | 7 | AY.119 | 0.000247 |
ORF3a | 65 | L65L | ctC | ctA | 4 | 7 | AY.16 | 0.001519 |
ORF3a | 65 | L65L | ctC | ctT | 3 | 7 | AY.16 | 0.001139 |
ORF3a | 65 | L65F | Ctc | Ttc | 7 | 7 | AY.33 | 0.000467 |
ORF3a | 65 | L65I | Ctc | Atc | 7 | 7 | AY.43 | 0.000031 |
ORF3a | 65 | L65H | cTc | cAc | 7 | 7 | B.1 | 0.000064 |
ORF3a | 65 | L65L | ctC | ctT | 5 | 7 | B.1.1.214 | 0.000277 |
ORF3a | 65 | L65L | ctC | ctG | 2 | 7 | B.1.1.214 | 0.000111 |
ORF3a | 65 | L65I | Ctc | Atc | 7 | 7 | B.1.1.349 | 0.072165 |
ORF3a | 65 | L65F | Ctc | Ttc | 7 | 7 | B.1.36.8 | 0.007 |
ORF3a | 65 | L65L | ctC | ctT | 7 | 7 | B.1.404 | 0.009115 |
ORF3a | 65 | L65L | ctC | ctT | 7 | 7 | B.1.422 | 0.005686 |
ORF3a | 65 | L65I | Ctc | Atc | 7 | 7 | B.1.617.2 | 0.000026 |
ORF3a | 65 | L65V | Ctc | Gtc | 7 | 7 | B.1.617.2 | 0.000026 |
ORF3a | 65 | L65H | cTc | cAc | 7 | 7 | B.1.621 | 0.00062 |
ORF3a | 65 | L65L | ctC | ctT | 4 | 7 | B.1.621 | 0.000354 |
ORF3a | 65 | L65L | ctC | ctA | 3 | 7 | B.1.621 | 0.000266 |
ORF3a | 65 | L65P | cTc | cCc | 7 | 7 | P.1 | 0.00011 |
ORF3a | 65 | L65L | ctC | ctT | 7 | 7 | Q.8 | 0.001154 |
ORF3a | 65 | L65F | Ctc | Ttc | 3 | 6 | 0.166667 | |
ORF3a | 65 | L65F | CtC | TtT | 3 | 6 | 0.166667 | |
ORF3a | 65 | L65F | Ctc | Ttc | 6 | 6 | AY.100 | 0.000276 |
ORF3a | 65 | L65H | cTc | cAc | 6 | 6 | AY.103 | 0.000037 |
ORF3a | 65 | L65I | Ctc | Atc | 6 | 6 | AY.25 | 0.000036 |
ORF3a | 65 | L65I | Ctc | Atc | 6 | 6 | AY.39 | 0.000148 |
ORF3a | 65 | L65F | Ctc | Ttc | 6 | 6 | AY.47 | 0.000187 |
ORF3a | 65 | L65F | Ctc | Ttc | 6 | 6 | AY.5 | 0.000124 |
ORF3a | 65 | L65P | cTc | cCc | 5 | 6 | B.1 | 0.000046 |
ORF3a | 65 | L65P | cTC | cCT | 1 | 6 | B.1 | 0.000009 |
ORF3a | 65 | L65I | Ctc | Atc | 6 | 6 | B.1.1.207 | 0.007092 |
ORF3a | 65 | L65I | Ctc | Atc | 6 | 6 | B.1.1.294 | 0.007595 |
ORF3a | 65 | L65L | ctC | ctT | 6 | 6 | B.1.1.33 | 0.002525 |
ORF3a | 65 | L65F | Ctc | Ttc | 6 | 6 | B.1.1.434 | 0.002091 |
ORF3a | 65 | L65L | ctC | ctT | 6 | 6 | B.1.177.86 | 0.001101 |
ORF3a | 65 | L65L | ctC | ctT | 6 | 6 | B.1.240 | 0.001293 |
ORF3a | 65 | L65L | ctC | ctT | 6 | 6 | B.1.250 | 0.086957 |
ORF3a | 65 | L65F | Ctc | Ttc | 6 | 6 | B.1.258 | 0.000399 |
ORF3a | 65 | L65L | ctC | ctT | 6 | 6 | B.1.36.1 | 0.006842 |
ORF3a | 65 | L65F | Ctc | Ttc | 6 | 6 | B.1.427 | 0.000303 |
ORF3a | 65 | L65L | ctC | ctT | 6 | 6 | B.1.609 | 0.002876 |
ORF3a | 65 | L65P | cTc | cCc | 6 | 6 | P.1.14 | 0.000287 |
ORF3a | 65 | L65L | ctC | ctT | 5 | 5 | 0.277778 | |
ORF3a | 65 | L65L | ctC | ctT | 5 | 5 | A.2.5.2 | 0.007862 |
ORF3a | 65 | L65Y | CTc | TAc | 3 | 5 | All | 0.000001 |
ORF3a | 65 | L65Y | CTC | TAT | 2 | 5 | All | 0 |
ORF3a | 65 | L65F | Ctc | Ttc | 5 | 5 | AY.120 | 0.000186 |
ORF3a | 65 | L65del | CTC | --- | 5 | 5 | AY.25 | 0.00003 |
ORF3a | 65 | L65F | Ctc | Ttc | 5 | 5 | AY.29 | 0.000079 |
ORF3a | 65 | L65L | ctC | ctT | 5 | 5 | AY.32 | 0.002662 |
ORF3a | 65 | L65P | cTc | cCc | 5 | 5 | AY.39.1 | 0.000198 |
ORF3a | 65 | L65del | CTC | --- | 5 | 5 | AY.4 | 0.000008 |
ORF3a | 65 | L65L | ctC | ctT | 5 | 5 | AY.46.4 | 0.000823 |
ORF3a | 65 | L65L | ctC | ctT | 5 | 5 | AY.6 | 0.000206 |
ORF3a | 65 | L65L | ctC | ctT | 5 | 5 | AY.75 | 0.00028 |
ORF3a | 65 | L65L | ctC | ctT | 4 | 5 | AY.84 | 0.00175 |
ORF3a | 65 | L65L | ctC | ctG | 1 | 5 | AY.84 | 0.000437 |
ORF3a | 65 | L65L | ctC | ctT | 4 | 5 | AY.98 | 0.000316 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 5 | AY.98 | 0.000079 |
ORF3a | 65 | L65L | ctC | ctT | 5 | 5 | B | 0.000639 |
ORF3a | 65 | L65I | Ctc | Atc | 5 | 5 | B.1.1 | 0.000091 |
ORF3a | 65 | L65L | ctC | ctT | 5 | 5 | B.1.1.171 | 0.018382 |
ORF3a | 65 | L65F | Ctc | Ttc | 5 | 5 | B.1.1.416 | 0.004525 |
ORF3a | 65 | L65R | cTc | cGc | 5 | 5 | B.1.1.7 | 0.000004 |
ORF3a | 65 | L65del | CTC | --- | 5 | 5 | B.1.177 | 0.000066 |
ORF3a | 65 | L65I | Ctc | Atc | 5 | 5 | B.1.206 | 0.004078 |
ORF3a | 65 | L65F | Ctc | Ttc | 5 | 5 | B.1.36.10 | 0.023923 |
ORF3a | 65 | L65F | Ctc | Ttc | 5 | 5 | B.1.466.2 | 0.001956 |
ORF3a | 65 | L65H | cTC | cAT | 2 | 4 | 0.111111 | |
ORF3a | 65 | L65Y | CTC | TAT | 2 | 4 | 0.111111 | |
ORF3a | 65 | L65Y | CTc | TAc | 2 | 4 | 0.111111 | |
ORF3a | 65 | L65H | cTc | cAc | 2 | 4 | 0.111111 | |
ORF3a | 65 | L65L | ctC | ctT | 4 | 4 | A | 0.001548 |
ORF3a | 65 | L65L | ctC | ctT | 4 | 4 | A.27 | 0.006623 |
ORF3a | 65 | L65Q | cTC | cAA | 4 | 4 | All | 0.000001 |
ORF3a | 65 | L65F | Ctc | Ttc | 4 | 4 | AY.113 | 0.00057 |
ORF3a | 65 | L65F | Ctc | Ttc | 4 | 4 | AY.117 | 0.000338 |
ORF3a | 65 | L65H | cTc | cAc | 4 | 4 | AY.119 | 0.000141 |
ORF3a | 65 | L65I | Ctc | Atc | 4 | 4 | AY.4.2 | 0.000087 |
ORF3a | 65 | L65R | cTc | cGc | 4 | 4 | AY.43 | 0.000018 |
ORF3a | 65 | L65F | Ctc | Ttc | 4 | 4 | AY.46 | 0.000416 |
ORF3a | 65 | L65L | ctC | ctA | 4 | 4 | AY.46.5 | 0.000794 |
ORF3a | 65 | L65F | Ctc | Ttc | 4 | 4 | AY.74 | 0.000463 |
ORF3a | 65 | L65L | ctC | ctT | 3 | 4 | AY.99.2 | 0.000276 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 4 | AY.99.2 | 0.000092 |
ORF3a | 65 | L65F | Ctc | Ttc | 4 | 4 | B.1.1.222 | 0.000816 |
ORF3a | 65 | L65L | ctC | ctT | 4 | 4 | B.1.1.284 | 0.00043 |
ORF3a | 65 | L65P | cTc | cCc | 4 | 4 | B.1.1.284 | 0.00043 |
ORF3a | 65 | L65L | ctC | ctT | 4 | 4 | B.1.1.317 | 0.001647 |
ORF3a | 65 | L65P | cTc | cCc | 4 | 4 | B.1.177 | 0.000053 |
ORF3a | 65 | L65L | ctC | ctA | 3 | 4 | B.1.177.16 | 0.001993 |
ORF3a | 65 | L65L | ctC | ctG | 1 | 4 | B.1.177.16 | 0.000664 |
ORF3a | 65 | L65L | ctC | ctA | 4 | 4 | B.1.213 | 0.059701 |
ORF3a | 65 | L65F | Ctc | Ttc | 4 | 4 | B.1.243 | 0.000278 |
ORF3a | 65 | L65F | Ctc | Ttc | 4 | 4 | B.1.311 | 0.001098 |
ORF3a | 65 | L65L | ctC | ctT | 4 | 4 | B.1.351.2 | 0.00121 |
ORF3a | 65 | L65F | Ctc | Ttc | 4 | 4 | B.1.369 | 0.001141 |
ORF3a | 65 | L65F | Ctc | Ttc | 4 | 4 | B.1.456 | 0.013072 |
ORF3a | 65 | L65L | ctC | ctT | 4 | 4 | B.1.551 | 0.005161 |
ORF3a | 65 | L65R | cTc | cGc | 4 | 4 | B.1.617.2 | 0.000015 |
ORF3a | 65 | L65F | Ctc | Ttc | 4 | 4 | B.1.620 | 0.003784 |
ORF3a | 65 | L65L | ctC | ctA | 2 | 4 | C.26 | 0.014706 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 4 | C.26 | 0.014706 |
ORF3a | 65 | L65L | ctC | ctT | 4 | 4 | D.2 | 0.0003 |
ORF3a | 65 | L65L | ctC | ctT | 4 | 4 | N.5 | 0.007067 |
ORF3a | 65 | L65L | ctC | ctT | 3 | 4 | P.1.1 | 0.000953 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 4 | P.1.1 | 0.000318 |
ORF3a | 65 | L65F | Ctc | Ttc | 4 | 4 | P.1.17 | 0.000647 |
ORF3a | 65 | L65P | cTc | cCc | 4 | 4 | P.1.4 | 0.003906 |
ORF3a | 65 | L65L | ctC | ctT | 4 | 4 | R.1 | 0.00036 |
ORF3a | 65 | L65L | ctC | ctT | 3 | 3 | A.2.5 | 0.001497 |
ORF3a | 65 | L65L | ctC | ctT | 3 | 3 | A.23.1 | 0.002113 |
ORF3a | 65 | L65del1 | ctC | ct- | 2 | 3 | All | 0 |
ORF3a | 65 | L65del1 | Ctc | -tc | 1 | 3 | All | 0 |
ORF3a | 65 | L65V | Ctc | Gtc | 3 | 3 | AY.100 | 0.000138 |
ORF3a | 65 | L65I | Ctc | Atc | 3 | 3 | AY.102 | 0.00008 |
ORF3a | 65 | L65L | ctC | ctT | 3 | 3 | AY.109 | 0.002219 |
ORF3a | 65 | L65L | ctC | ctT | 3 | 3 | AY.111 | 0.000549 |
ORF3a | 65 | L65L | ctC | ctT | 3 | 3 | AY.13 | 0.000483 |
ORF3a | 65 | L65H | cTc | cAc | 3 | 3 | AY.23 | 0.000209 |
ORF3a | 65 | L65R | cTc | cGc | 3 | 3 | AY.3 | 0.00003 |
ORF3a | 65 | L65I | Ctc | Atc | 3 | 3 | AY.3.1 | 0.000256 |
ORF3a | 65 | L65L | ctC | ctT | 3 | 3 | AY.38 | 0.001498 |
ORF3a | 65 | L65R | cTc | cGc | 3 | 3 | AY.4 | 0.000005 |
ORF3a | 65 | L65L | ctC | ctT | 3 | 3 | AY.4.5 | 0.000322 |
ORF3a | 65 | L65F | Ctc | Ttc | 3 | 3 | AY.40 | 0.002893 |
ORF3a | 65 | L65del | CTC | --- | 3 | 3 | AY.43 | 0.000013 |
ORF3a | 65 | L65I | Ctc | Atc | 3 | 3 | AY.44 | 0.000018 |
ORF3a | 65 | L65L | ctC | ctT | 3 | 3 | AY.46 | 0.000312 |
ORF3a | 65 | L65L | ctC | ctA | 3 | 3 | AY.46.2 | 0.001906 |
ORF3a | 65 | L65P | cTc | cCc | 3 | 3 | AY.51 | 0.002727 |
ORF3a | 65 | L65F | Ctc | Ttc | 3 | 3 | AY.55 | 0.002752 |
ORF3a | 65 | L65I | Ctc | Atc | 3 | 3 | AY.71 | 0.001425 |
ORF3a | 65 | L65L | ctC | ctT | 3 | 3 | AY.73 | 0.001996 |
ORF3a | 65 | L65I | Ctc | Atc | 3 | 3 | AY.75.1 | 0.000541 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 3 | AY.75.1 | 0.000361 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 3 | AY.75.1 | 0.00018 |
ORF3a | 65 | L65F | Ctc | Ttc | 3 | 3 | AY.88 | 0.002653 |
ORF3a | 65 | L65F | Ctc | Ttc | 3 | 3 | AY.9 | 0.000203 |
ORF3a | 65 | L65L | ctC | ctT | 3 | 3 | AY.92 | 0.000862 |
ORF3a | 65 | L65L | ctC | ctT | 3 | 3 | AY.93 | 0.000819 |
ORF3a | 65 | L65L | ctC | ctA | 3 | 3 | AY.94 | 0.001328 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 3 | AZ.2 | 0.001642 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 3 | AZ.2 | 0.000821 |
ORF3a | 65 | L65del | CTC | --- | 3 | 3 | B.1 | 0.000027 |
ORF3a | 65 | L65F | Ctc | Ttc | 3 | 3 | B.1.1.214 | 0.000166 |
ORF3a | 65 | L65L | ctC | ctT | 3 | 3 | B.1.1.241 | 0.006211 |
ORF3a | 65 | L65F | Ctc | Ttc | 3 | 3 | B.1.1.37 | 0.000579 |
ORF3a | 65 | L65L | ctC | ctT | 3 | 3 | B.1.1.388 | 0.136364 |
ORF3a | 65 | L65L | ctC | ctT | 3 | 3 | B.1.177.10 | 0.002634 |
ORF3a | 65 | L65V | Ctc | Gtc | 3 | 3 | B.1.177.4 | 0.000633 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 3 | B.1.177.73 | 0.001133 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 3 | B.1.177.73 | 0.000566 |
ORF3a | 65 | L65I | Ctc | Atc | 3 | 3 | B.1.2 | 0.000026 |
ORF3a | 65 | L65F | Ctc | Ttc | 3 | 3 | B.1.221 | 0.000213 |
ORF3a | 65 | L65F | Ctc | Ttc | 3 | 3 | B.1.239 | 0.003663 |
ORF3a | 65 | L65F | Ctc | Ttc | 2 | 3 | B.1.258.14 | 0.001961 |
ORF3a | 65 | L65F | CtC | TtT | 1 | 3 | B.1.258.14 | 0.00098 |
ORF3a | 65 | L65I | Ctc | Atc | 3 | 3 | B.1.36 | 0.000438 |
ORF3a | 65 | L65P | cTc | cCc | 3 | 3 | B.1.36.17 | 0.001482 |
ORF3a | 65 | L65L | ctC | ctT | 3 | 3 | B.1.575 | 0.00091 |
ORF3a | 65 | L65del | CTC | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF3a | 65 | L65L | ctC | ctT | 3 | 3 | B.1.619 | 0.002613 |
ORF3a | 65 | L65L | ctC | ctT | 3 | 3 | C.28 | 0.12 |
ORF3a | 65 | L65F | Ctc | Ttc | 3 | 3 | C.35 | 0.002322 |
ORF3a | 65 | L65L | ctC | ctT | 3 | 3 | C.36.3 | 0.001702 |
ORF3a | 65 | L65L | ctC | ctT | 3 | 3 | P.1.10 | 0.000808 |
ORF3a | 65 | L65F | Ctc | Ttc | 3 | 3 | P.1.16 | 0.001122 |
ORF3a | 65 | L65F | Ctc | Ttc | 3 | 3 | P.1.7 | 0.000958 |
ORF3a | 65 | L65F | Ctc | Ttc | 3 | 3 | Q.1 | 0.000379 |
ORF3a | 65 | L65F | Ctc | Ttc | 3 | 3 | R.1 | 0.00027 |
ORF3a | 65 | L65del | CTC | --- | 3 | 3 | U.3 | 0.011583 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | A.2 | 0.001324 |
ORF3a | 65 | L65K | CTC | AAA | 2 | 2 | All | 0 |
ORF3a | 65 | L65del2 | cTC | c-- | 2 | 2 | All | 0 |
ORF3a | 65 | L65I | Ctc | Atc | 2 | 2 | AY.100 | 0.000092 |
ORF3a | 65 | L65V | Ctc | Gtc | 2 | 2 | AY.102 | 0.000053 |
ORF3a | 65 | L65P | cTc | cCc | 2 | 2 | AY.103 | 0.000012 |
ORF3a | 65 | L65R | cTc | cGc | 2 | 2 | AY.103 | 0.000012 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | AY.106 | 0.00067 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | AY.107 | 0.000932 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | AY.108 | 0.002205 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | AY.110 | 0.000225 |
ORF3a | 65 | L65F | Ctc | Ttc | 2 | 2 | AY.111 | 0.000366 |
ORF3a | 65 | L65L | ctC | ctA | 2 | 2 | AY.118 | 0.000125 |
ORF3a | 65 | L65I | Ctc | Atc | 2 | 2 | AY.120 | 0.000074 |
ORF3a | 65 | L65F | Ctc | Ttc | 2 | 2 | AY.120.1 | 0.000642 |
ORF3a | 65 | L65F | Ctc | Ttc | 2 | 2 | AY.121 | 0.000271 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 2 | AY.121 | 0.000135 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 2 | AY.121 | 0.000135 |
ORF3a | 65 | L65L | ctC | ctA | 2 | 2 | AY.19 | 0.002281 |
ORF3a | 65 | L65P | cTc | cCc | 2 | 2 | AY.20 | 0.000078 |
ORF3a | 65 | L65F | Ctc | Ttc | 2 | 2 | AY.21 | 0.003795 |
ORF3a | 65 | L65F | Ctc | Ttc | 2 | 2 | AY.26 | 0.000057 |
ORF3a | 65 | L65F | Ctc | Ttc | 2 | 2 | AY.29.1 | 0.000441 |
ORF3a | 65 | L65V | Ctc | Gtc | 2 | 2 | AY.3 | 0.00002 |
ORF3a | 65 | L65F | Ctc | Ttc | 2 | 2 | AY.3.1 | 0.000171 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 2 | AY.34 | 0.000097 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 2 | AY.34 | 0.000097 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | AY.34.1 | 0.00102 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 2 | AY.35 | 0.000233 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 2 | AY.35 | 0.000233 |
ORF3a | 65 | L65F | Ctc | Ttc | 2 | 2 | AY.4.2 | 0.000043 |
ORF3a | 65 | L65F | Ctc | Ttc | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF3a | 65 | L65F | Ctc | Ttc | 2 | 2 | AY.4.4 | 0.000818 |
ORF3a | 65 | L65del | CTC | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF3a | 65 | L65V | Ctc | Gtc | 2 | 2 | AY.44 | 0.000012 |
ORF3a | 65 | L65F | Ctc | Ttc | 2 | 2 | AY.45 | 0.000243 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | AY.46.6 | 0.000144 |
ORF3a | 65 | L65P | cTc | cCc | 2 | 2 | AY.46.6 | 0.000144 |
ORF3a | 65 | L65F | Ctc | Ttc | 2 | 2 | AY.54 | 0.000191 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | AY.55 | 0.001835 |
ORF3a | 65 | L65F | Ctc | Ttc | 2 | 2 | AY.57 | 0.001312 |
ORF3a | 65 | L65F | Ctc | Ttc | 2 | 2 | AY.61 | 0.00021 |
ORF3a | 65 | L65F | Ctc | Ttc | 2 | 2 | AY.62 | 0.000871 |
ORF3a | 65 | L65F | Ctc | Ttc | 2 | 2 | AY.75 | 0.000112 |
ORF3a | 65 | L65F | Ctc | Ttc | 2 | 2 | AY.75.1 | 0.000361 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | AY.9.1 | 0.000167 |
ORF3a | 65 | L65F | Ctc | Ttc | 2 | 2 | AY.9.2 | 0.000073 |
ORF3a | 65 | L65F | Ctc | Ttc | 2 | 2 | AY.92 | 0.000575 |
ORF3a | 65 | L65F | Ctc | Ttc | 2 | 2 | AY.94 | 0.000885 |
ORF3a | 65 | L65F | Ctc | Ttc | 2 | 2 | AY.98.1 | 0.000097 |
ORF3a | 65 | L65F | Ctc | Ttc | 2 | 2 | B | 0.000256 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | B.1.1.15 | 0.027027 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | B.1.1.170 | 0.002494 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | B.1.1.205 | 0.007435 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | B.1.1.225 | 0.014388 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | B.1.1.25 | 0.001137 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | B.1.1.277 | 0.001517 |
ORF3a | 65 | L65F | Ctc | Ttc | 2 | 2 | B.1.1.306 | 0.000877 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | B.1.1.312 | 0.003824 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 2 | B.1.1.318 | 0.000302 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 2 | B.1.1.318 | 0.000302 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | B.1.1.324 | 0.105263 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | B.1.1.348 | 0.001592 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | B.1.1.372 | 0.001377 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | B.1.1.416 | 0.00181 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | B.1.1.63 | 0.000772 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | B.1.1.70 | 0.000682 |
ORF3a | 65 | L65I | Ctc | Atc | 2 | 2 | B.1.177 | 0.000026 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | B.1.177.56 | 0.001335 |
ORF3a | 65 | L65P | cTc | cCc | 2 | 2 | B.1.2 | 0.000018 |
ORF3a | 65 | L65F | Ctc | Ttc | 2 | 2 | B.1.214.4 | 0.018182 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | B.1.243.1 | 0.044444 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 2 | B.1.301 | 0.005917 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 2 | B.1.301 | 0.005917 |
ORF3a | 65 | L65F | Ctc | Ttc | 2 | 2 | B.1.351.3 | 0.001753 |
ORF3a | 65 | L65I | Ctc | Atc | 2 | 2 | B.1.36.10 | 0.009569 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | B.1.36.22 | 0.002415 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 2 | B.1.36.29 | 0.000517 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 2 | B.1.36.29 | 0.000517 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | B.1.377 | 0.009132 |
ORF3a | 65 | L65P | cTc | cCc | 2 | 2 | B.1.427 | 0.000101 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | B.1.453 | 0.006472 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | B.1.470 | 0.002809 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | B.1.576 | 0.001813 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | B.1.621.1 | 0.001012 |
ORF3a | 65 | L65R | cTc | cGc | 2 | 2 | B.1.628 | 0.000705 |
ORF3a | 65 | L65I | Ctc | Atc | 2 | 2 | B.1.637 | 0.000146 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | B.12 | 0.012821 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | B.29 | 0.007018 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | B.3 | 0.001661 |
ORF3a | 65 | L65F | Ctc | Ttc | 2 | 2 | B.6 | 0.00182 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | B.6 | 0.00182 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | C.1.2 | 0.008511 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | C.23 | 0.011628 |
ORF3a | 65 | L65P | cTc | cCc | 2 | 2 | C.37 | 0.000232 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | L.3 | 0.007092 |
ORF3a | 65 | L65I | Ctc | Atc | 2 | 2 | P.1 | 0.000032 |
ORF3a | 65 | L65P | cTc | cCc | 2 | 2 | P.1.6 | 0.003891 |
ORF3a | 65 | L65F | Ctc | Ttc | 2 | 2 | P.2 | 0.000373 |
ORF3a | 65 | L65F | Ctc | Ttc | 2 | 2 | P.3 | 0.00319 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | P.6 | 0.006289 |
ORF3a | 65 | L65L | ctC | ctT | 2 | 2 | Q.3 | 0.00029 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | A | 0.000387 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | A.1 | 0.000282 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | A.16 | 0.016129 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | A.2.4 | 0.003367 |
ORF3a | 65 | L65V | Ctc | Gtc | 1 | 1 | A.2.5.2 | 0.001572 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | A.28 | 0.002646 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | AA.5 | 0.016129 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | AD.2 | 0.000219 |
ORF3a | 65 | L65del2 | cTC | c-- | 1 | 1 | AD.2 | 0.000219 |
ORF3a | 65 | L65del | CTC | --- | 1 | 1 | AH.3 | 0.003802 |
ORF3a | 65 | L65S | CTC | TCA | 1 | 1 | All | 0 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | AY.101 | 0.00049 |
ORF3a | 65 | L65H | cTc | cAc | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 65 | L65V | Ctc | Gtc | 1 | 1 | AY.103 | 0.000006 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 1 | AY.105 | 0.000643 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | AY.107 | 0.000466 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | AY.110 | 0.000113 |
ORF3a | 65 | L65del | CTC | --- | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | AY.114 | 0.000231 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | AY.116 | 0.000287 |
ORF3a | 65 | L65P | cTc | cCc | 1 | 1 | AY.116 | 0.000287 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | AY.116.1 | 0.000311 |
ORF3a | 65 | L65I | Ctc | Atc | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 65 | L65P | cTc | cCc | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 65 | L65del | CTC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 65 | L65I | Ctc | Atc | 1 | 1 | AY.121 | 0.000135 |
ORF3a | 65 | L65I | Ctc | Atc | 1 | 1 | AY.13 | 0.000161 |
ORF3a | 65 | L65L | ctC | ctG | 1 | 1 | AY.14 | 0.000088 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | AY.16.1 | 0.00047 |
ORF3a | 65 | L65del | CTC | --- | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 1 | AY.23.1 | 0.000417 |
ORF3a | 65 | L65V | Ctc | Gtc | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 65 | L65P | cTc | cCc | 1 | 1 | AY.28 | 0.00189 |
ORF3a | 65 | L65I | Ctc | Atc | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 65 | L65P | cTc | cCc | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | AY.29.1 | 0.000221 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 65 | L65P | cTc | cCc | 1 | 1 | AY.36 | 0.000148 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | AY.36 | 0.000148 |
ORF3a | 65 | L65P | cTc | cCc | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 65 | L65del | CTC | --- | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 65 | L65H | cTc | cAc | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 65 | L65del1 | ctC | ct- | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 65 | L65H | cTc | cAc | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 65 | L65P | cTc | cCc | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 65 | L65del2 | cTC | c-- | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | AY.4.4 | 0.000409 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | AY.41 | 0.000294 |
ORF3a | 65 | L65P | cTc | cCc | 1 | 1 | AY.41 | 0.000294 |
ORF3a | 65 | L65Y | CTc | TAc | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 65 | L65del1 | Ctc | -tc | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 65 | L65S | CTC | TCA | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | AY.46.1 | 0.001027 |
ORF3a | 65 | L65P | cTc | cCc | 1 | 1 | AY.46.2 | 0.000635 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | AY.46.5 | 0.000198 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | AY.48 | 0.000465 |
ORF3a | 65 | L65P | cTc | cCc | 1 | 1 | AY.5 | 0.000021 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | AY.5.3 | 0.000337 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | AY.5.4 | 0.000277 |
ORF3a | 65 | L65H | cTc | cAc | 1 | 1 | AY.5.4 | 0.000277 |
ORF3a | 65 | L65I | Ctc | Atc | 1 | 1 | AY.53 | 0.000288 |
ORF3a | 65 | L65P | cTc | cCc | 1 | 1 | AY.55 | 0.000917 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | AY.58 | 0.000907 |
ORF3a | 65 | L65I | Ctc | Atc | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 65 | L65P | cTc | cCc | 1 | 1 | AY.62 | 0.000436 |
ORF3a | 65 | L65I | Ctc | Atc | 1 | 1 | AY.62 | 0.000436 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | AY.64 | 0.000595 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | AY.64 | 0.000595 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | AY.65 | 0.000533 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | AY.65 | 0.000533 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 65 | L65V | CtC | GtG | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | AY.69 | 0.000187 |
ORF3a | 65 | L65P | cTc | cCc | 1 | 1 | AY.7.1 | 0.000113 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | AY.7.2 | 0.000559 |
ORF3a | 65 | L65P | cTc | cCc | 1 | 1 | AY.70 | 0.000209 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | AY.70 | 0.000209 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | AY.77 | 0.001127 |
ORF3a | 65 | L65P | cTc | cCc | 1 | 1 | AY.80 | 0.001129 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | AY.82 | 0.001357 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | AY.85 | 0.000427 |
ORF3a | 65 | L65del | CTC | --- | 1 | 1 | AY.9 | 0.000068 |
ORF3a | 65 | L65V | Ctc | Gtc | 1 | 1 | AY.9.1 | 0.000084 |
ORF3a | 65 | L65V | Ctc | Gtc | 1 | 1 | AY.9.2 | 0.000037 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | AY.93 | 0.000273 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | AY.95 | 0.000761 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | AY.98 | 0.000079 |
ORF3a | 65 | L65P | cTc | cCc | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 65 | L65V | CtC | GtG | 1 | 1 | AY.99 | 0.001049 |
ORF3a | 65 | L65I | Ctc | Atc | 1 | 1 | AY.99.1 | 0.001553 |
ORF3a | 65 | L65I | Ctc | Atc | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 65 | L65K | CTC | AAA | 1 | 1 | B.1 | 0.000009 |
ORF3a | 65 | L65Q | cTC | cAA | 1 | 1 | B.1 | 0.000009 |
ORF3a | 65 | L65K | CTC | AAA | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 65 | L65V | Ctc | Gtc | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 65 | L65del | CTC | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 65 | L65Q | cTC | cAA | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.1.1 | 0.000327 |
ORF3a | 65 | L65Q | cTC | cAA | 1 | 1 | B.1.1.139 | 0.022727 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.1.153 | 0.001095 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.1.161 | 0.003534 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.1.198 | 0.001468 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.1.207 | 0.001182 |
ORF3a | 65 | L65I | Ctc | Atc | 1 | 1 | B.1.1.214 | 0.000055 |
ORF3a | 65 | L65I | Ctc | Atc | 1 | 1 | B.1.1.220 | 0.001859 |
ORF3a | 65 | L65P | cTc | cCc | 1 | 1 | B.1.1.222 | 0.000204 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.1.231 | 0.003096 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.1.254 | 0.011236 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.1.261 | 0.008621 |
ORF3a | 65 | L65I | Ctc | Atc | 1 | 1 | B.1.1.263 | 0.001558 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.1.269 | 0.001353 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.1.28 | 0.000311 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.1.284 | 0.000107 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.1.297 | 0.002237 |
ORF3a | 65 | L65P | cTc | cCc | 1 | 1 | B.1.1.306 | 0.000438 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.1.316 | 0.000925 |
ORF3a | 65 | L65P | cTc | cCc | 1 | 1 | B.1.1.318 | 0.000302 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.1.318 | 0.000302 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.1.33 | 0.000421 |
ORF3a | 65 | L65P | cTc | cCc | 1 | 1 | B.1.1.34 | 0.013158 |
ORF3a | 65 | L65L | ctC | ctG | 1 | 1 | B.1.1.340 | 0.045455 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.1.345 | 0.043478 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.1.347 | 0.018182 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.1.369 | 0.000446 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.1.389 | 0.006061 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.1.39 | 0.00051 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.1.396 | 0.045455 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.1.4 | 0.002976 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 65 | L65del | CTC | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.1.433 | 0.001425 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF3a | 65 | L65I | Ctc | Atc | 1 | 1 | B.1.1.448 | 0.002033 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 1 | B.1.1.448 | 0.002033 |
ORF3a | 65 | L65I | Ctc | Atc | 1 | 1 | B.1.1.47 | 0.005348 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.1.50 | 0.000679 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.1.518 | 0.006329 |
ORF3a | 65 | L65P | cTc | cCc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.1.521 | 0.005348 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 1 | B.1.1.526 | 0.003546 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.1.53 | 0.013699 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.1.57 | 0.011494 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.1.8 | 0.003584 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.127 | 0.002198 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.128 | 0.000635 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.13 | 0.002375 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 1 | B.1.139 | 0.000733 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.140 | 0.018868 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.146 | 0.004237 |
ORF3a | 65 | L65P | cTc | cCc | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.160.26 | 0.002421 |
ORF3a | 65 | L65del | CTC | --- | 1 | 1 | B.1.160.7 | 0.002079 |
ORF3a | 65 | L65del | CTC | --- | 1 | 1 | B.1.161 | 0.017241 |
ORF3a | 65 | L65Q | cTC | cAA | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 65 | L65R | cTc | cGc | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.177.12 | 0.000152 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.177.20 | 0.001517 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 1 | B.1.177.21 | 0.000076 |
ORF3a | 65 | L65I | Ctc | Atc | 1 | 1 | B.1.177.21 | 0.000076 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.177.23 | 0.003236 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.177.31 | 0.011494 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.177.4 | 0.000211 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 1 | B.1.177.40 | 0.005155 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.177.41 | 0.0025 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.177.50 | 0.004695 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.177.54 | 0.000606 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF3a | 65 | L65P | cTc | cCc | 1 | 1 | B.1.177.69 | 0.001484 |
ORF3a | 65 | L65P | cTc | cCc | 1 | 1 | B.1.177.81 | 0.000189 |
ORF3a | 65 | L65I | Ctc | Atc | 1 | 1 | B.1.177.87 | 0.000728 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.177.87 | 0.000728 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.189 | 0.004292 |
ORF3a | 65 | L65I | Ctc | Atc | 1 | 1 | B.1.194 | 0.04 |
ORF3a | 65 | L65V | Ctc | Gtc | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 65 | L65del1 | ctC | ct- | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.206 | 0.000816 |
ORF3a | 65 | L65I | Ctc | Atc | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.232 | 0.000537 |
ORF3a | 65 | L65I | Ctc | Atc | 1 | 1 | B.1.234 | 0.000132 |
ORF3a | 65 | L65V | Ctc | Gtc | 1 | 1 | B.1.234 | 0.000132 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.234 | 0.000132 |
ORF3a | 65 | L65V | Ctc | Gtc | 1 | 1 | B.1.240 | 0.000216 |
ORF3a | 65 | L65P | cTc | cCc | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 65 | L65I | Ctc | Atc | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.258.14 | 0.00098 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.258.22 | 0.002667 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.260 | 0.003344 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.311 | 0.000275 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.346 | 0.001311 |
ORF3a | 65 | L65I | Ctc | Atc | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.36.26 | 0.002857 |
ORF3a | 65 | L65P | cTc | cCc | 1 | 1 | B.1.36.29 | 0.000517 |
ORF3a | 65 | L65R | cTc | cGc | 1 | 1 | B.1.36.31 | 0.001751 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.36.36 | 0.000602 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.36.37 | 0.002778 |
ORF3a | 65 | L65P | cTc | cCc | 1 | 1 | B.1.36.8 | 0.001 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.36.8 | 0.001 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.36.9 | 0.003215 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 1 | B.1.371 | 0.001122 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.396 | 0.000706 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.396 | 0.000706 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.400 | 0.000429 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.400 | 0.000429 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.409 | 0.000781 |
ORF3a | 65 | L65del | CTC | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.426 | 0.001009 |
ORF3a | 65 | L65P | cTc | cCc | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 65 | L65del | CTC | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.433 | 0.003195 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.438.1 | 0.000107 |
ORF3a | 65 | L65del | CTC | --- | 1 | 1 | B.1.446 | 0.02 |
ORF3a | 65 | L65R | cTc | cGc | 1 | 1 | B.1.459 | 0.004082 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.465 | 0.003802 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.466 | 0.023256 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.468 | 0.005714 |
ORF3a | 65 | L65P | cTc | cCc | 1 | 1 | B.1.470 | 0.001404 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.497 | 0.000315 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.497 | 0.000315 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.503 | 0.002488 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 65 | L65R | cTc | cGc | 1 | 1 | B.1.526 | 0.000024 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.526 | 0.000024 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.560 | 0.00463 |
ORF3a | 65 | L65del | CTC | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.561 | 0.000397 |
ORF3a | 65 | L65R | cTc | cGc | 1 | 1 | B.1.564 | 0.000426 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.576 | 0.000907 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.581 | 0.009434 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.582 | 0.000491 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.595 | 0.000261 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.595.1 | 0.005848 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.605 | 0.005952 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.606 | 0.006024 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.609 | 0.000479 |
ORF3a | 65 | L65P | cTc | cCc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 65 | L65I | Ctc | Atc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.620 | 0.000946 |
ORF3a | 65 | L65V | Ctc | Gtc | 1 | 1 | B.1.621 | 0.000089 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.621.1 | 0.000506 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.623 | 0.000536 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.625 | 0.002353 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.627 | 0.00202 |
ORF3a | 65 | L65I | Ctc | Atc | 1 | 1 | B.1.628 | 0.000352 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.630 | 0.005236 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.636 | 0.006711 |
ORF3a | 65 | L65R | cTc | cGc | 1 | 1 | B.1.637 | 0.000073 |
ORF3a | 65 | L65del | CTC | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.78 | 0.008547 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.1.9.5 | 0.005682 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | B.1.93 | 0.000934 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 1 | B.4 | 0.002208 |
ORF3a | 65 | L65del | CTC | --- | 1 | 1 | B.40 | 0.000364 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | B.6.8 | 0.008264 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | C.36 | 0.000911 |
ORF3a | 65 | L65R | cTc | cGc | 1 | 1 | C.37 | 0.000116 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | D.2 | 0.000075 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | D.5 | 0.004975 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | N.6 | 0.007092 |
ORF3a | 65 | L65V | Ctc | Gtc | 1 | 1 | P.1 | 0.000016 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | P.1.1 | 0.000318 |
ORF3a | 65 | L65I | Ctc | Atc | 1 | 1 | P.1.1 | 0.000318 |
ORF3a | 65 | L65P | cTc | cCc | 1 | 1 | P.1.1 | 0.000318 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | P.1.12 | 0.000484 |
ORF3a | 65 | L65del | CTC | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 65 | L65I | Ctc | Atc | 1 | 1 | P.1.16 | 0.000374 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | P.3 | 0.001595 |
ORF3a | 65 | L65F | Ctc | Ttc | 1 | 1 | P.6 | 0.003145 |
ORF3a | 65 | L65I | Ctc | Atc | 1 | 1 | Q.4 | 0.000455 |
ORF3a | 65 | L65L | ctC | ctT | 1 | 1 | Q.6 | 0.006623 |
ORF3a | 65 | L65L | ctC | ctA | 1 | 1 | W.4 | 0.001351 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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