CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 64

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a64T64TsynacCacT736971040.96403925582-25584
ORF3a64T64TsynacCacA73691470.019948425582-25584
ORF3a64T64TsynacCacG73691180.01601325582-25584
ORF3a64T64InonsynaCcaTc458045790.99978225582-25584
ORF3a64T64InonsynaCCaTT458010.00021834125582-25584
ORF3a64T64NnonsynaCcaAc192192125582-25584
ORF3a64T64AnonsynAccGcc1151130.98260925582-25584
ORF3a64T64AnonsynAcCGcT11520.017391325582-25584
ORF3a64T64SnonsynAccTcc1101020.92727325582-25584
ORF3a64T64SnonsynaCcaGc11050.045454525582-25584
ORF3a64T64SnonsynAcCTcA11020.018181825582-25584
ORF3a64T64SnonsynAcCTcT11010.0090909125582-25584
ORF3a64T64deldelACC---5353125582-25584
ORF3a64T64PnonsynAccCcc77125582-25584
ORF3a64T64del1delaCca-c530.625582-25584
ORF3a64T64del1delacCac-520.425582-25584
ORF3a64T64FnonsynACcTTc320.66666725582-25584
ORF3a64T64FnonsynACCTTT310.33333325582-25584
ORF3a64T64MnonsynaCCaTG22125582-25584
ORF3a64T64CnonsynACcTGc22125582-25584
ORF3a64T64RnonsynaCCaGA22125582-25584
ORF3a64T64XnonsynACCTGA22125582-25584
ORF3a64T64DnonsynACCGAT22125582-25584
ORF3a64T64HnonsynACcCAc11125582-25584
ORF3a64T64del2delACC--G11125582-25584

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a64T64TacCacT71047369All0.001359
ORF3a64T64TacCacA1477369All0.000028
ORF3a64T64TacCacG1187369All0.000023
ORF3a64T64IaCcaTc45794580All0.000876
ORF3a64T64IaCCaTT14580All0
ORF3a64T64TacCacT27112711AY.330.181035
ORF3a64T64TacCacT11081152B.1.1.70.000992
ORF3a64T64TacCacG321152B.1.1.70.000029
ORF3a64T64TacCacA121152B.1.1.70.000011
ORF3a64T64IaCcaTc833833AY.40.001297
ORF3a64T64IaCcaTc750750B.1.177.580.998668
ORF3a64T64TacCacT668676B.1.1.5190.026527
ORF3a64T64TacCacG8676B.1.1.5190.000318
ORF3a64T64IaCcaTc634634B.1.1.70.000568
ORF3a64T64TacCacT451451AY.260.012768
ORF3a64T64IaCcaTc405405B.1.617.20.001525
ORF3a64T64TacCacT403403B.1.258.170.041901
ORF3a64T64IaCcaTc378378AY.430.001675
ORF3a64T64IaCcaTc234234AY.1020.006204
ORF3a64T64IaCcaTc216216AY.30.002148
ORF3a64T64NaCcaAc192192All0.000037
ORF3a64T64TacCacT181185B.1.617.20.000682
ORF3a64T64TacCacA4185B.1.617.20.000015
ORF3a64T64IaCcaTc172172B.1.6260.982857
ORF3a64T64TacCacT141158AY.40.000219
ORF3a64T64TacCacG10158AY.40.000016
ORF3a64T64TacCacA7158AY.40.000011
ORF3a64T64TacCacT144148AY.250.000866
ORF3a64T64TacCacG2148AY.250.000012
ORF3a64T64TacCacA2148AY.250.000012
ORF3a64T64NaCcaAc131131B.1.4290.003082
ORF3a64T64AAccGcc113115All0.000022
ORF3a64T64AAcCGcT2115All0
ORF3a64T64TacCacT112112B.1.5950.029228
ORF3a64T64SAccTcc102110All0.00002
ORF3a64T64SaCcaGc5110All0.000001
ORF3a64T64SAcCTcA2110All0
ORF3a64T64SAcCTcT1110All0
ORF3a64T64TacCacT53108AY.30.000527
ORF3a64T64TacCacA53108AY.30.000527
ORF3a64T64TacCacG2108AY.30.00002
ORF3a64T64TacCacT9898AY.1000.004509
ORF3a64T64TacCacT8890B.1.20.000775
ORF3a64T64TacCacG190B.1.20.000009
ORF3a64T64TacCacA190B.1.20.000009
ORF3a64T64SAccTcc8889AY.30.000875
ORF3a64T64SaCcaGc189AY.30.00001
ORF3a64T64TacCacT6886AY.1030.000422
ORF3a64T64TacCacA1786AY.1030.000106
ORF3a64T64TacCacG186AY.1030.000006
ORF3a64T64TacCacT7881AY.430.000346
ORF3a64T64TacCacG381AY.430.000013
ORF3a64T64TacCacT5376AY.440.000323
ORF3a64T64TacCacA2376AY.440.00014
ORF3a64T64IaCcaTc7474B.10.000678
ORF3a64T64IaCcaTc6666B.1.36.350.171875
ORF3a64T64IaCcaTc6464AY.470.001991
ORF3a64T64IaCcaTc6161AY.390.001507
ORF3a64T64TacCacG5461P.20.010078
ORF3a64T64TacCacT761P.20.001306
ORF3a64T64TacCacT5656B.1.5260.001316
ORF3a64T64delACC---5353All0.00001
ORF3a64T64IaCcaTc5050AY.1030.00031
ORF3a64T64TacCacT4545B.1.3050.096774
ORF3a64T64IaCcaTc4444B.1.20.000387
ORF3a64T64AAccGcc4242B.1.617.20.000158
ORF3a64T64IaCcaTc4040AY.440.000243
ORF3a64T64IaCcaTc3535AY.50.000723
ORF3a64T64TacCacT3334B.10.000302
ORF3a64T64TacCacA134B.10.000009
ORF3a64T64TacCacT3334B.1.10.000599
ORF3a64T64TacCacA134B.1.10.000018
ORF3a64T64IaCcaTc3030AY.200.001166
ORF3a64T64IaCcaTc2727B.1.1770.000356
ORF3a64T64IaCcaTc2626AY.250.000156
ORF3a64T64AAccGcc2424P.10.000378
ORF3a64T64TacCacT2223P.10.000347
ORF3a64T64TacCacG123P.10.000016
ORF3a64T64IaCcaTc1919AY.34.10.009689
ORF3a64T64IaCcaTc1919B.1.177.210.001453
ORF3a64T64IaCcaTc1717AY.260.000481
ORF3a64T64NaCcaAc1717AY.30.000169
ORF3a64T64TacCacT1717AY.370.005373
ORF3a64T64TacCacT1717B.1.2210.001208
ORF3a64T64IaCcaTc1717B.1.5090.014719
ORF3a64T64IaCcaTc1515AY.330.001002
ORF3a64T64TacCacT1414AY.1020.000371
ORF3a64T64TacCacT1414AY.390.000346
ORF3a64T64IaCcaTc1414B.1.2340.001847
ORF3a64T64TacCacT1414Q.40.006367
ORF3a64T64TacCacT1313AE.80.006357
ORF3a64T64TacCacA1313B.1.4700.018258
ORF3a64T64TacCacT1212AY.450.00146
ORF3a64T64TacCacT1212B.1.3510.000357
ORF3a64T64TacCacT1111AW.10.033537
ORF3a64T64IaCcaTc1111AY.1000.000506
ORF3a64T64IaCcaTc1111AY.1200.000409
ORF3a64T64TacCacT1111AY.360.00163
ORF3a64T64TacCacT1011AY.850.004272
ORF3a64T64TacCacG111AY.850.000427
ORF3a64T64delACC---1111B.1.1.70.00001
ORF3a64T64TacCacT1111B.1.1600.000343
ORF3a64T64IaCcaTc1111P.10.000173
ORF3a64T64IaCcaTc1010AY.290.000158
ORF3a64T64TacCacT1010AY.980.00079
ORF3a64T64AAccGcc1010B.1.1.70.000009
ORF3a64T64TacCacT1010P.1.140.000478
ORF3a64T64IaCcaTc99AY.1170.000761
ORF3a64T64IaCcaTc99AY.230.000628
ORF3a64T64IaCcaTc99AY.360.001334
ORF3a64T64IaCcaTc99AY.460.000937
ORF3a64T64IaCcaTc99AY.98.10.000436
ORF3a64T64TacCacT89B.1.2430.000557
ORF3a64T64TacCacA19B.1.2430.00007
ORF3a64T64TacCacT99B.1.4000.003861
ORF3a64T64TacCacT99B.1.617.10.001161
ORF3a64T64TacCacT480.222222
ORF3a64T64SAccTcc380.166667
ORF3a64T64SaCcaGc280.111111
ORF3a64T64TacCacG280.111111
ORF3a64T64SAcCTcA280.111111
ORF3a64T64TacCacA280.111111
ORF3a64T64SAcCTcT180.055556
ORF3a64T64TacCacT78AY.4.20.000152
ORF3a64T64TacCacA18AY.4.20.000022
ORF3a64T64IaCcaTc88AY.420.000322
ORF3a64T64TacCacT68AY.9.20.00022
ORF3a64T64TacCacA28AY.9.20.000073
ORF3a64T64TacCacT88AY.9.2.10.01581
ORF3a64T64IaCcaTc88AY.910.005844
ORF3a64T64IaCcaTc88B.1.10.000145
ORF3a64T64PAccCcc77All0.000001
ORF3a64T64TacCacT77AY.9.10.000586
ORF3a64T64TacCacT77AZ.2.10.056911
ORF3a64T64TacCacT77B.1.1770.000092
ORF3a64T64TacCacT77B.1.2580.000466
ORF3a64T64IaCcaTc77B.1.3510.000208
ORF3a64T64IaCcaTc77B.1.5260.000165
ORF3a64T64TacCacT77B.1.6210.00062
ORF3a64T64IaCcaTc66AY.450.00073
ORF3a64T64TacCacT66AY.470.000187
ORF3a64T64TacCacT66AY.610.000629
ORF3a64T64IaCcaTc66AY.930.001638
ORF3a64T64AAccGcc66AY.980.000474
ORF3a64T64IaCcaTc66B.1.1.3180.001811
ORF3a64T64TacCacT66B.1.1.3180.001811
ORF3a64T64NaCcaAc66B.1.1770.000079
ORF3a64T64IaCcaTc66B.1.6390.130435
ORF3a64T64del1aCca-c35All0.000001
ORF3a64T64del1acCac-25All0
ORF3a64T64IaCcaTc55AY.1180.000313
ORF3a64T64IaCcaTc55AY.1190.000177
ORF3a64T64TacCacT55AY.290.000079
ORF3a64T64TacCacT55AY.3.10.000426
ORF3a64T64TacCacT55AY.4.50.000537
ORF3a64T64TacCacT55AY.60.000206
ORF3a64T64IaCcaTc55AY.920.001436
ORF3a64T64TacCacT55AY.950.003805
ORF3a64T64IaCcaTc55AY.980.000395
ORF3a64T64TacCacT55B.1.1.1350.023474
ORF3a64T64TacCacT45B.1.1.280.001245
ORF3a64T64TacCacG15B.1.1.280.000311
ORF3a64T64TacCacT55B.1.1.4340.001743
ORF3a64T64TacCacT55B.1.1.630.001929
ORF3a64T64delACC---55B.1.1770.000066
ORF3a64T64IaCcaTc55B.1.4270.000252
ORF3a64T64TacCacT55B.1.4290.000118
ORF3a64T64IaCcaTc55B.1.5750.001517
ORF3a64T64IaCcaTc55B.1.6340.017123
ORF3a64T64TacCacT55P.50.068493
ORF3a64T64IaCcaTc340.166667
ORF3a64T64AAccGcc240.111111
ORF3a64T64AAcCGcT240.111111
ORF3a64T64IaCCaTT140.055556
ORF3a64T64TacCacT44AY.1210.000541
ORF3a64T64TacCacT44AY.16.10.00188
ORF3a64T64TacCacT34AY.200.000117
ORF3a64T64TacCacA14AY.200.000039
ORF3a64T64TacCacT44AY.350.000932
ORF3a64T64TacCacT44AY.39.1.10.002899
ORF3a64T64delACC---44AY.40.000006
ORF3a64T64IaCcaTc44AY.610.000419
ORF3a64T64TacCacT44AY.75.10.000721
ORF3a64T64IaCcaTc44AY.840.00175
ORF3a64T64TacCacA24AY.99.20.000184
ORF3a64T64TacCacT24AY.99.20.000184
ORF3a64T64TacCacT44B0.000511
ORF3a64T64NaCcaAc44B.10.000037
ORF3a64T64TacCacT44B.1.1.2140.000222
ORF3a64T64IaCcaTc44B.1.177.810.000757
ORF3a64T64AAccGcc44B.1.20.000035
ORF3a64T64IaCcaTc44B.1.5960.000349
ORF3a64T64IaCcaTc44P.1.100.001078
ORF3a64T64IaCcaTc44P.1.140.000191
ORF3a64T64TacCacT33A.23.10.002113
ORF3a64T64FACcTTc23All0
ORF3a64T64FACCTTT13All0
ORF3a64T64TacCacT33AU.10.003797
ORF3a64T64IaCcaTc33AY.10.001187
ORF3a64T64IaCcaTc33AY.100.00159
ORF3a64T64TacCacT33AY.1060.001005
ORF3a64T64IaCcaTc33AY.1100.000338
ORF3a64T64NaCcaAc33AY.1170.000254
ORF3a64T64TacCacT33AY.230.000209
ORF3a64T64delACC---33AY.250.000018
ORF3a64T64AAccGcc33AY.30.00003
ORF3a64T64IaCcaTc33AY.340.000291
ORF3a64T64IaCcaTc33AY.350.000699
ORF3a64T64SAccTcc33AY.40.000005
ORF3a64T64TacCacT33AY.4.2.10.000447
ORF3a64T64TacCacT33AY.46.40.000494
ORF3a64T64TacCacT33AY.46.50.000595
ORF3a64T64IaCcaTc33AY.5.40.00083
ORF3a64T64IaCcaTc33AY.7.10.000338
ORF3a64T64IaCcaTc33AY.750.000168
ORF3a64T64IaCcaTc33AY.9.20.00011
ORF3a64T64TacCacT33B.1.1.10.00098
ORF3a64T64TacCacT33B.1.1.1280.021277
ORF3a64T64TacCacT33B.1.1.3970.006757
ORF3a64T64TacCacT33B.1.1.3980.009677
ORF3a64T64IaCcaTc33B.1.1.5190.000119
ORF3a64T64NaCcaAc33B.1.1.70.000003
ORF3a64T64IaCcaTc33B.1.1460.012712
ORF3a64T64NaCcaAc33B.1.1600.000094
ORF3a64T64IaCcaTc33B.1.2210.000213
ORF3a64T64TacCacT33B.1.2390.003663
ORF3a64T64NaCcaAc33B.1.2430.000209
ORF3a64T64IaCcaTc33B.1.4290.000071
ORF3a64T64IaCcaTc33B.1.466.20.001174
ORF3a64T64IaCcaTc33B.1.5950.000783
ORF3a64T64delACC---33B.1.617.20.000011
ORF3a64T64TacCacT33C.160.003181
ORF3a64T64TacCacT33C.370.000348
ORF3a64T64IaCcaTc33C.370.000348
ORF3a64T64TacCacT33Q.80.000495
ORF3a64T64delACC---33U.30.011583
ORF3a64T64CACcTGc220.111111
ORF3a64T64XACCTGA220.111111
ORF3a64T64RaCCaGA220.111111
ORF3a64T64MaCCaTG220.111111
ORF3a64T64FACCTTT120.055556
ORF3a64T64FACcTTc120.055556
ORF3a64T64CACcTGc22All0
ORF3a64T64MaCCaTG22All0
ORF3a64T64DACCGAT22All0
ORF3a64T64RaCCaGA22All0
ORF3a64T64XACCTGA22All0
ORF3a64T64TacCacT22AY.10.000791
ORF3a64T64AAccGcc22AY.1030.000012
ORF3a64T64IaCcaTc22AY.1130.000285
ORF3a64T64IaCcaTc22AY.1160.000574
ORF3a64T64NaCcaAc22AY.1200.000074
ORF3a64T64IaCcaTc22AY.240.000862
ORF3a64T64del1acCac-22AY.250.000012
ORF3a64T64IaCcaTc22AY.280.003781
ORF3a64T64AAccGcc22AY.370.000632
ORF3a64T64IaCcaTc22AY.4.50.000215
ORF3a64T64delACC---22AY.4.50.000215
ORF3a64T64delACC---22AY.430.000009
ORF3a64T64AAccGcc22AY.430.000009
ORF3a64T64TacCacT22AY.460.000208
ORF3a64T64IaCcaTc22AY.46.10.002053
ORF3a64T64TacCacT22AY.46.20.001271
ORF3a64T64TacCacT22AY.46.60.000144
ORF3a64T64TacCacT22AY.50.000041
ORF3a64T64TacCacT22AY.5.30.000675
ORF3a64T64TacCacT22AY.540.000191
ORF3a64T64TacCacT22AY.650.001066
ORF3a64T64TacCacT22AY.690.000373
ORF3a64T64TacCacT22AY.700.000417
ORF3a64T64TacCacT22AY.710.00095
ORF3a64T64IaCcaTc22AY.75.10.000361
ORF3a64T64IaCcaTc22AY.9.10.000167
ORF3a64T64TacCacT22AY.930.000546
ORF3a64T64NaCcaAc22AY.980.000158
ORF3a64T64delACC---22B.10.000018
ORF3a64T64SaCcaGc12B.10.000009
ORF3a64T64SAccTcc12B.10.000009
ORF3a64T64AAccGcc22B.1.10.000036
ORF3a64T64NaCcaAc22B.1.10.000036
ORF3a64T64TacCacT22B.1.1.2160.001781
ORF3a64T64TacCacT22B.1.1.2940.002532
ORF3a64T64IaCcaTc22B.1.1600.000062
ORF3a64T64TacCacT22B.1.160.160.001859
ORF3a64T64AAccGcc22B.1.1770.000026
ORF3a64T64TacCacT22B.1.177.40.000422
ORF3a64T64AAccGcc22B.1.177.50.002484
ORF3a64T64TacCacT22B.1.177.810.000379
ORF3a64T64SAccTcc22B.1.20.000018
ORF3a64T64NaCcaAc22B.1.20.000018
ORF3a64T64AAccGcc22B.1.3510.000059
ORF3a64T64TacCacT22B.1.360.000292
ORF3a64T64TacCacT22B.1.3990.003868
ORF3a64T64TacCacT22B.1.5090.001732
ORF3a64T64TacCacT22B.1.5490.014388
ORF3a64T64TacCacT22B.1.5600.009259
ORF3a64T64NaCcaAc22B.1.5670.006667
ORF3a64T64TacCacT22B.1.5960.000174
ORF3a64T64IaCcaTc22B.1.617.10.000258
ORF3a64T64IaCcaTc22B.1.6210.000177
ORF3a64T64TacCacT22B.1.6370.000146
ORF3a64T64TacCacT22C.90.060606
ORF3a64T64IaCcaTc22D.20.00015
ORF3a64T64TacCacT22D.20.00015
ORF3a64T64TacCacT22P.1.170.000324
ORF3a64T64IaCcaTc22P.1.17.10.00175
ORF3a64T64TacCacT22Q.30.00029
ORF3a64T64IaCcaTc22Q.80.00033
ORF3a64T64NaCcaAc110.055556
ORF3a64T64HACcCAc110.055556
ORF3a64T64PAccCcc110.055556
ORF3a64T64IaCcaTc11A.10.000282
ORF3a64T64TacCacT11A.20.000662
ORF3a64T64TacCacT11A.280.002646
ORF3a64T64delACC---11AH.30.003802
ORF3a64T64HACcCAc11All0
ORF3a64T64del2ACC--G11All0
ORF3a64T64TacCacT11AY.1010.00049
ORF3a64T64IaCcaTc11AY.1010.00049
ORF3a64T64IaCcaTc11AY.1060.000335
ORF3a64T64IaCcaTc11AY.1070.000466
ORF3a64T64TacCacT11AY.1080.001103
ORF3a64T64IaCcaTc11AY.1110.000183
ORF3a64T64delACC---11AY.1110.000183
ORF3a64T64TacCacT11AY.1140.000231
ORF3a64T64TacCacT11AY.1170.000085
ORF3a64T64SAccTcc11AY.1170.000085
ORF3a64T64TacCacT11AY.1180.000063
ORF3a64T64AAccGcc11AY.1190.000035
ORF3a64T64TacCacT11AY.1190.000035
ORF3a64T64SAccTcc11AY.1190.000035
ORF3a64T64delACC---11AY.1200.000037
ORF3a64T64TacCacT11AY.1200.000037
ORF3a64T64IaCcaTc11AY.130.000161
ORF3a64T64TacCacT11AY.130.000161
ORF3a64T64TacCacT11AY.140.000088
ORF3a64T64TacCacT11AY.160.00038
ORF3a64T64IaCcaTc11AY.16.10.00047
ORF3a64T64delACC---11AY.230.00007
ORF3a64T64IaCcaTc11AY.23.10.000417
ORF3a64T64TacCacT11AY.240.000431
ORF3a64T64SAccTcc11AY.250.000006
ORF3a64T64AAccGcc11AY.260.000028
ORF3a64T64TacCacT11AY.270.000065
ORF3a64T64AAccGcc11AY.290.000016
ORF3a64T64NaCcaAc11AY.290.000016
ORF3a64T64TacCacT11AY.29.10.000221
ORF3a64T64IaCcaTc11AY.3.10.000085
ORF3a64T64TacCacT11AY.340.000097
ORF3a64T64TacCacT11AY.34.10.00051
ORF3a64T64NaCcaAc11AY.390.000025
ORF3a64T64delACC---11AY.390.000025
ORF3a64T64NaCcaAc11AY.40.000002
ORF3a64T64IaCcaTc11AY.4.20.000022
ORF3a64T64TacCacT11AY.420.00004
ORF3a64T64NaCcaAc11AY.430.000004
ORF3a64T64SAccTcc11AY.440.000006
ORF3a64T64delACC---11AY.440.000006
ORF3a64T64AAccGcc11AY.46.20.000635
ORF3a64T64IaCcaTc11AY.46.40.000165
ORF3a64T64NaCcaAc11AY.470.000031
ORF3a64T64TacCacT11AY.480.000465
ORF3a64T64TacCacT11AY.490.003195
ORF3a64T64IaCcaTc11AY.5.30.000337
ORF3a64T64TacCacT11AY.550.000917
ORF3a64T64IaCcaTc11AY.550.000917
ORF3a64T64TacCacT11AY.580.000907
ORF3a64T64IaCcaTc11AY.60.000041
ORF3a64T64DACCGAT11AY.670.000464
ORF3a64T64PAccCcc11AY.720.001361
ORF3a64T64IaCcaTc11AY.730.000665
ORF3a64T64IaCcaTc11AY.740.000116
ORF3a64T64TacCacT11AY.750.000056
ORF3a64T64TacCacT11AY.770.001127
ORF3a64T64IaCcaTc11AY.820.001357
ORF3a64T64IaCcaTc11AY.850.000427
ORF3a64T64TacCacT11AY.90.000068
ORF3a64T64delACC---11AY.90.000068
ORF3a64T64IaCcaTc11AY.90.000068
ORF3a64T64AAccGcc11AY.90.000068
ORF3a64T64PAccCcc11AY.9.20.000037
ORF3a64T64delACC---11AY.9.20.000037
ORF3a64T64TacCacT11AY.910.00073
ORF3a64T64TacCacT11AY.920.000287
ORF3a64T64PAccCcc11AY.980.000079
ORF3a64T64TacCacT11AY.98.10.000048
ORF3a64T64DACCGAT11AY.990.001049
ORF3a64T64TacCacT11AZ.10.000867
ORF3a64T64FACcTTc11B.10.000009
ORF3a64T64del1aCca-c11B.10.000009
ORF3a64T64AAccGcc11B.10.000009
ORF3a64T64delACC---11B.1.10.000018
ORF3a64T64IaCcaTc11B.1.1.10.000327
ORF3a64T64TacCacT11B.1.1.100.001115
ORF3a64T64del2ACC--G11B.1.1.1390.022727
ORF3a64T64TacCacT11B.1.1.1530.001095
ORF3a64T64TacCacT11B.1.1.1700.001247
ORF3a64T64TacCacT11B.1.1.2090.008929
ORF3a64T64TacCacT11B.1.1.2200.001859
ORF3a64T64IaCcaTc11B.1.1.2220.000204
ORF3a64T64IaCcaTc11B.1.1.2440.015385
ORF3a64T64IaCcaTc11B.1.1.250.000569
ORF3a64T64TacCacT11B.1.1.250.000569
ORF3a64T64IaCcaTc11B.1.1.2660.012195
ORF3a64T64IaCcaTc11B.1.1.2740.005051
ORF3a64T64IaCcaTc11B.1.1.2770.000759
ORF3a64T64IaCcaTc11B.1.1.280.000311
ORF3a64T64IaCcaTc11B.1.1.30.008696
ORF3a64T64TacCacT11B.1.1.3060.000438
ORF3a64T64TacCacT11B.1.1.3290.003846
ORF3a64T64TacCacT11B.1.1.3440.010753
ORF3a64T64TacCacT11B.1.1.3550.015385
ORF3a64T64TacCacT11B.1.1.370.000193
ORF3a64T64TacCacT11B.1.1.3720.000689
ORF3a64T64TacCacT11B.1.1.390.00051
ORF3a64T64delACC---11B.1.1.4090.002833
ORF3a64T64TacCacT11B.1.1.4180.022727
ORF3a64T64IaCcaTc11B.1.1.4200.001006
ORF3a64T64IaCcaTc11B.1.1.4640.001473
ORF3a64T64IaCcaTc11B.1.1.5070.008696
ORF3a64T64SAccTcc11B.1.1.5190.00004
ORF3a64T64NaCcaAc11B.1.1.5190.00004
ORF3a64T64TacCacA11B.1.1.710.006061
ORF3a64T64TacCacT11B.1.1110.001175
ORF3a64T64TacCacT11B.1.1430.021277
ORF3a64T64PAccCcc11B.1.160.120.00641
ORF3a64T64AAccGcc11B.1.160.160.000929
ORF3a64T64TacCacT11B.1.160.220.006757
ORF3a64T64TacCacT11B.1.160.290.004219
ORF3a64T64delACC---11B.1.160.70.002079
ORF3a64T64delACC---11B.1.1610.017241
ORF3a64T64TacCacT11B.1.177.200.001517
ORF3a64T64TacCacT11B.1.177.420.000894
ORF3a64T64TacCacT11B.1.177.440.000519
ORF3a64T64TacCacA11B.1.177.570.000281
ORF3a64T64NaCcaAc11B.1.177.600.000218
ORF3a64T64TacCacT11B.1.177.730.000566
ORF3a64T64IaCcaTc11B.1.177.730.000566
ORF3a64T64TacCacT11B.1.177.770.000726
ORF3a64T64TacCacT11B.1.1980.071429
ORF3a64T64PAccCcc11B.1.20.000009
ORF3a64T64TacCacT11B.1.2100.002132
ORF3a64T64TacCacT11B.1.221.10.002907
ORF3a64T64TacCacT11B.1.2220.001692
ORF3a64T64TacCacT11B.1.2340.000132
ORF3a64T64TacCacT11B.1.2400.000216
ORF3a64T64TacCacT11B.1.2410.000812
ORF3a64T64IaCcaTc11B.1.2430.00007
ORF3a64T64TacCacT11B.1.258.110.000396
ORF3a64T64IaCcaTc11B.1.2790.000514
ORF3a64T64IaCcaTc11B.1.2910.019231
ORF3a64T64TacCacT11B.1.3190.003049
ORF3a64T64TacCacT11B.1.351.20.000303
ORF3a64T64TacCacT11B.1.351.30.000876
ORF3a64T64IaCcaTc11B.1.360.000146
ORF3a64T64TacCacT11B.1.36.170.000494
ORF3a64T64TacCacT11B.1.36.290.000517
ORF3a64T64TacCacT11B.1.36.380.001642
ORF3a64T64IaCcaTc11B.1.3620.001541
ORF3a64T64TacCacT11B.1.3670.000792
ORF3a64T64IaCcaTc11B.1.3960.000706
ORF3a64T64IaCcaTc11B.1.4000.000429
ORF3a64T64delACC---11B.1.4150.014286
ORF3a64T64NaCcaAc11B.1.4280.00102
ORF3a64T64delACC---11B.1.4290.000024
ORF3a64T64TacCacT11B.1.438.10.000107
ORF3a64T64TacCacT11B.1.466.10.007194
ORF3a64T64TacCacT11B.1.4740.001901
ORF3a64T64del1aCca-c11B.1.5010.007353
ORF3a64T64IaCcaTc11B.1.5100.026316
ORF3a64T64del1aCca-c11B.1.5110.034483
ORF3a64T64TacCacT11B.1.5170.000427
ORF3a64T64NaCcaAc11B.1.5250.000113
ORF3a64T64TacCacT11B.1.5250.000113
ORF3a64T64delACC---11B.1.5610.000397
ORF3a64T64SaCcaGc11B.1.5610.000397
ORF3a64T64IaCcaTc11B.1.5650.00081
ORF3a64T64TacCacA11B.1.5670.003333
ORF3a64T64TacCacT11B.1.5760.000907
ORF3a64T64TacCacT11B.1.5770.000687
ORF3a64T64TacCacT11B.1.5900.004545
ORF3a64T64IaCcaTc11B.1.5990.00365
ORF3a64T64TacCacT11B.1.6090.000479
ORF3a64T64NaCcaAc11B.1.617.20.000004
ORF3a64T64TacCacT11B.1.6250.002353
ORF3a64T64IaCcaTc11B.1.6250.002353
ORF3a64T64IaCcaTc11B.1.6270.00202
ORF3a64T64TacCacT11B.1.6330.041667
ORF3a64T64TacCacT11B.1.6360.006711
ORF3a64T64delACC---11B.1.6380.052632
ORF3a64T64delACC---11B.400.000364
ORF3a64T64IaCcaTc11B.400.000364
ORF3a64T64IaCcaTc11B.60.00091
ORF3a64T64NaCcaAc11C.140.004329
ORF3a64T64IaCcaTc11C.160.00106
ORF3a64T64IaCcaTc11C.36.10.004149
ORF3a64T64PAccCcc11D.20.000075
ORF3a64T64AAccGcc11P.1.10.000318
ORF3a64T64TacCacT11P.1.130.000898
ORF3a64T64delACC---11P.1.150.000232
ORF3a64T64TacCacT11P.1.160.000374
ORF3a64T64IaCcaTc11P.1.60.001946
ORF3a64T64TacCacT11P.1.70.000319
ORF3a64T64IaCcaTc11P.20.000187
ORF3a64T64TacCacA11Q.10.000126
ORF3a64T64TacCacT11R.10.00009
ORF3a64T64IaCcaTc11R.10.00009