CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 60 | S60S | syn | tcC | tcT | 7811 | 7002 | 0.896428 | 25570-25572 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 60 | S60S | tcC | tcT | 7002 | 7811 | All | 0.001339 |
ORF3a | 60 | S60S | tcC | tcT | 2575 | 2677 | B.1.1.7 | 0.002305 |
ORF3a | 60 | S60S | tcC | tcT | 648 | 712 | B.1.617.2 | 0.00244 |
ORF3a | 60 | S60S | tcC | tcT | 385 | 399 | AY.43 | 0.001706 |
ORF3a | 60 | S60S | tcC | tcT | 392 | 392 | AY.5.2 | 0.965517 |
ORF3a | 60 | S60S | tcC | tcT | 376 | 376 | AY.48 | 0.174884 |
ORF3a | 60 | S60S | tcC | tcT | 274 | 314 | B.1.429 | 0.006447 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 294 | AY.61 | 0.00021 |
ORF3a | 60 | S60S | tcC | tcT | 192 | 220 | AY.4 | 0.000299 |
ORF3a | 60 | S60S | tcC | tcT | 172 | 173 | B.1.160 | 0.005364 |
ORF3a | 60 | S60S | tcC | tcT | 143 | 144 | B.1.177 | 0.001883 |
ORF3a | 60 | S60S | tcC | tcT | 36 | 137 | AY.103 | 0.000224 |
ORF3a | 60 | S60S | tcC | tcT | 125 | 125 | B.35 | 0.976562 |
ORF3a | 60 | S60S | tcC | tcT | 116 | 116 | B.1.338 | 1 |
ORF3a | 60 | S60S | tcC | tcT | 90 | 92 | AY.39.1 | 0.003565 |
ORF3a | 60 | S60S | tcC | tcT | 84 | 84 | AH.3 | 0.319392 |
ORF3a | 60 | S60S | tcC | tcT | 70 | 79 | AY.44 | 0.000426 |
ORF3a | 60 | S60S | tcC | tcT | 61 | 77 | B.1.2 | 0.000537 |
ORF3a | 60 | S60S | tcC | tcT | 61 | 61 | B.1.243 | 0.004245 |
ORF3a | 60 | S60S | tcC | tcT | 46 | 54 | B.1 | 0.000421 |
ORF3a | 60 | S60S | tcC | tcT | 49 | 52 | P.1 | 0.000772 |
ORF3a | 60 | S60S | tcC | tcT | 50 | 50 | B.1.177.86 | 0.009173 |
ORF3a | 60 | S60S | tcC | tcT | 42 | 46 | AY.25 | 0.000253 |
ORF3a | 60 | S60S | tcC | tcT | 43 | 43 | B.1.36.29 | 0.022245 |
ORF3a | 60 | S60S | tcC | tcT | 37 | 40 | B.1.1 | 0.000671 |
ORF3a | 60 | S60S | tcC | tcT | 35 | 38 | AY.102 | 0.000928 |
ORF3a | 60 | S60S | tcC | tcT | 38 | 38 | B.1.1.311 | 0.01361 |
ORF3a | 60 | S60S | tcC | tcT | 34 | 36 | B.1.221 | 0.002415 |
ORF3a | 60 | S60S | tcC | tcT | 35 | 35 | B.1.564.1 | 0.055205 |
ORF3a | 60 | S60S | tcC | tcT | 31 | 32 | AY.32 | 0.016507 |
ORF3a | 60 | S60S | tcC | tcT | 27 | 29 | AY.39 | 0.000667 |
ORF3a | 60 | S60S | tcC | tcT | 24 | 26 | B.1.351 | 0.000713 |
ORF3a | 60 | S60S | tcC | tcT | 25 | 25 | B.1.438.1 | 0.002682 |
ORF3a | 60 | S60S | tcC | tcT | 20 | 23 | AY.20 | 0.000777 |
ORF3a | 60 | S60S | tcC | tcT | 20 | 21 | B.1.258 | 0.001331 |
ORF3a | 60 | S60S | tcC | tcT | 20 | 20 | B.1.1.487 | 0.111732 |
ORF3a | 60 | S60S | tcC | tcT | 15 | 19 | B.1.526 | 0.000353 |
ORF3a | 60 | S60S | tcC | tcT | 17 | 17 | B.1.240 | 0.003665 |
ORF3a | 60 | S60S | tcC | tcT | 16 | 17 | B.1.621 | 0.001416 |
ORF3a | 60 | S60S | tcC | tcT | 12 | 16 | AY.3 | 0.000119 |
ORF3a | 60 | S60S | tcC | tcT | 12 | 16 | AY.47 | 0.000373 |
ORF3a | 60 | S60S | tcC | tcT | 10 | 16 | AY.63 | 0.003868 |
ORF3a | 60 | S60S | tcC | tcT | 15 | 15 | C.36 | 0.013661 |
ORF3a | 60 | S60S | tcC | tcT | 12 | 14 | AY.26 | 0.00034 |
ORF3a | 60 | S60S | tcC | tcT | 14 | 14 | B.1.561 | 0.005558 |
ORF3a | 60 | S60S | tcC | tcT | 12 | 13 | B.1.637 | 0.000877 |
ORF3a | 60 | S60S | tcC | tcT | 11 | 13 | C.37 | 0.001277 |
ORF3a | 60 | S60S | tcC | tcT | 11 | 12 | B.1.427 | 0.000555 |
ORF3a | 60 | S60S | tcC | tcT | 8 | 11 | B.1.36 | 0.001167 |
ORF3a | 60 | S60S | tcC | tcT | 4 | 10 | AY.35 | 0.000932 |
ORF3a | 60 | S60S | tcC | tcT | 9 | 10 | D.2 | 0.000675 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 10 | N.5 | 0.001767 |
ORF3a | 60 | S60S | tcC | tcT | 9 | 9 | AY.23 | 0.000628 |
ORF3a | 60 | S60S | tcC | tcT | 7 | 9 | AY.29 | 0.00011 |
ORF3a | 60 | S60S | tcC | tcT | 9 | 9 | AY.57 | 0.005906 |
ORF3a | 60 | S60S | tcC | tcT | 9 | 9 | B.1.36.21 | 0.019438 |
ORF3a | 60 | S60S | tcC | tcT | 8 | 9 | B.1.525 | 0.000905 |
ORF3a | 60 | S60S | tcC | tcT | 8 | 8 | AY.46 | 0.000833 |
ORF3a | 60 | S60S | tcC | tcT | 8 | 8 | AY.46.6 | 0.000578 |
ORF3a | 60 | S60S | tcC | tcT | 8 | 8 | AY.62 | 0.003486 |
ORF3a | 60 | S60S | tcC | tcT | 8 | 8 | AY.75 | 0.000448 |
ORF3a | 60 | S60S | tcC | tcT | 8 | 8 | B.1.1.519 | 0.000318 |
ORF3a | 60 | S60S | tcC | tcT | 8 | 8 | B.1.351.2 | 0.002421 |
ORF3a | 60 | S60S | tcC | tcT | 8 | 8 | B.1.568 | 0.008889 |
ORF3a | 60 | S60S | tcC | tcT | 8 | 8 | B.1.595 | 0.002088 |
ORF3a | 60 | S60S | tcC | tcT | 8 | 8 | B.1.628 | 0.002819 |
ORF3a | 60 | S60S | tcC | tcT | 7 | 7 | B.1.588 | 0.006369 |
ORF3a | 60 | S60S | tcC | tcT | 7 | 7 | Q.8 | 0.001154 |
ORF3a | 60 | S60S | tcC | tcT | 5 | 6 | AY.4.2 | 0.000108 |
ORF3a | 60 | S60S | tcC | tcT | 6 | 6 | B.1.44 | 0.05 |
ORF3a | 60 | S60S | tcC | tcT | 5 | 5 | AY.100 | 0.00023 |
ORF3a | 60 | S60S | tcC | tcT | 5 | 5 | AY.117 | 0.000423 |
ORF3a | 60 | S60S | tcC | tcT | 4 | 5 | AY.120 | 0.000149 |
ORF3a | 60 | S60S | tcC | tcT | 4 | 5 | AY.33 | 0.000267 |
ORF3a | 60 | S60S | tcC | tcT | 5 | 5 | AY.58 | 0.004537 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 5 | AY.98.1 | 0.000097 |
ORF3a | 60 | S60S | tcC | tcT | 5 | 5 | B.1.1.158 | 0.060976 |
ORF3a | 60 | S60S | tcC | tcT | 5 | 5 | B.1.1.285 | 0.03268 |
ORF3a | 60 | S60S | tcC | tcT | 5 | 5 | B.6 | 0.00455 |
ORF3a | 60 | S60S | tcC | tcT | 4 | 4 | AY.34.1 | 0.00204 |
ORF3a | 60 | S60S | tcC | tcT | 4 | 4 | AY.5.4 | 0.001107 |
ORF3a | 60 | S60S | tcC | tcT | 4 | 4 | AY.9.1 | 0.000335 |
ORF3a | 60 | S60S | tcC | tcT | 4 | 4 | AY.99.2 | 0.000369 |
ORF3a | 60 | S60S | tcC | tcT | 4 | 4 | B.1.1.170 | 0.004988 |
ORF3a | 60 | S60S | tcC | tcT | 4 | 4 | B.1.1.214 | 0.000222 |
ORF3a | 60 | S60S | tcC | tcT | 4 | 4 | B.1.1.222 | 0.000816 |
ORF3a | 60 | S60S | tcC | tcT | 4 | 4 | B.1.1.28 | 0.001245 |
ORF3a | 60 | S60S | tcC | tcT | 4 | 4 | B.1.1.70 | 0.001364 |
ORF3a | 60 | S60S | tcC | tcT | 4 | 4 | B.1.177.54 | 0.002426 |
ORF3a | 60 | S60S | tcC | tcT | 4 | 4 | B.1.214.2 | 0.002398 |
ORF3a | 60 | S60S | tcC | tcT | 4 | 4 | B.1.258.17 | 0.000416 |
ORF3a | 60 | S60S | tcC | tcT | 3 | 4 | B.1.36.18 | 0.001261 |
ORF3a | 60 | S60S | tcC | tcT | 4 | 4 | B.1.462 | 0.028986 |
ORF3a | 60 | S60S | tcC | tcT | 4 | 4 | B.1.498 | 0.081633 |
ORF3a | 60 | S60S | tcC | tcT | 3 | 4 | B.1.596 | 0.000261 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 4 | B.1.617.1 | 0.000258 |
ORF3a | 60 | S60S | tcC | tcT | 4 | 4 | C.14 | 0.017316 |
ORF3a | 60 | S60S | tcC | tcT | 4 | 4 | P.1.7 | 0.001277 |
ORF3a | 60 | S60S | tcC | tcT | 4 | 4 | W.4 | 0.005405 |
ORF3a | 60 | S60S | tcC | tcT | 3 | 3 | A.29 | 0.015957 |
ORF3a | 60 | S60S | tcC | tcT | 3 | 3 | AL.1 | 0.038961 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 3 | AY.105 | 0.000643 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 3 | AY.14 | 0.000088 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 3 | AY.5 | 0.000041 |
ORF3a | 60 | S60S | tcC | tcT | 3 | 3 | AY.84 | 0.001312 |
ORF3a | 60 | S60S | tcC | tcT | 3 | 3 | B.1.1.1 | 0.00098 |
ORF3a | 60 | S60S | tcC | tcT | 3 | 3 | B.1.1.216 | 0.002671 |
ORF3a | 60 | S60S | tcC | tcT | 3 | 3 | B.1.1.33 | 0.001263 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 3 | B.1.177.81 | 0.000379 |
ORF3a | 60 | S60S | tcC | tcT | 3 | 3 | B.1.367 | 0.002377 |
ORF3a | 60 | S60S | tcC | tcT | 3 | 3 | B.1.620 | 0.002838 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 3 | P.1.12 | 0.000968 |
ORF3a | 60 | S60S | tcC | tcT | 3 | 3 | Q.3 | 0.000435 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 2 | AY.110 | 0.000225 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 2 | AY.113 | 0.000285 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 2 | AY.116 | 0.000574 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 2 | AY.16 | 0.000759 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 2 | AY.24 | 0.000862 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 2 | AY.38 | 0.000499 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 2 | AY.45 | 0.000243 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 2 | AY.46.5 | 0.000397 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 2 | AY.5.3 | 0.000675 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 2 | AY.54 | 0.000191 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 2 | AY.65 | 0.001066 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 2 | AY.74 | 0.000116 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 2 | AY.75.1 | 0.000361 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 2 | AY.91 | 0.001461 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 2 | AY.93 | 0.000546 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 2 | AY.98 | 0.000158 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 2 | AY.99 | 0.001049 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 2 | AZ.5 | 0.007018 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 2 | B | 0.000256 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 2 | B.1.1.434 | 0.000697 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 2 | B.1.1.50 | 0.001358 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 2 | B.1.1.89 | 0.012121 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 2 | B.1.177.4 | 0.000422 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 2 | B.1.199 | 0.008264 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 2 | B.1.232 | 0.001075 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 2 | B.1.305 | 0.004301 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 2 | B.1.311 | 0.000549 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 2 | B.1.416 | 0.002538 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 2 | B.1.497 | 0.00063 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 2 | B.1.499 | 0.002101 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 2 | B.1.575 | 0.000607 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 2 | C.36.1 | 0.004149 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 2 | P.1.14 | 0.000048 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 2 | P.1.4 | 0.001953 |
ORF3a | 60 | S60S | tcC | tcT | 2 | 2 | P.2 | 0.000373 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | A | 0.000387 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | A.2 | 0.000662 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | A.2.2 | 0.001689 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | A.2.5.2 | 0.001572 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | AY.109 | 0.00074 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | AY.120.1 | 0.000321 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | AY.13 | 0.000161 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | AY.27 | 0.000065 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | AY.34 | 0.000097 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | AY.37 | 0.000316 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | AY.39.2 | 0.001541 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | AY.40 | 0.000964 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | AY.41 | 0.000294 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | AY.51 | 0.000909 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | AY.53 | 0.000288 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | AY.69 | 0.000187 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | AY.80 | 0.001129 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | AY.9.2 | 0.000037 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | AY.95 | 0.000761 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | AY.99.1 | 0.001553 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | AZ.1 | 0.000867 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | AZ.2 | 0.000821 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | AZ.3 | 0.00152 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.1.133 | 0.008475 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.1.136 | 0.021277 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.1.148 | 0.008772 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.1.152 | 0.04 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.1.189 | 0.001513 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.1.204 | 0.00304 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.1.207 | 0.001182 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.1.241 | 0.00207 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.1.294 | 0.001266 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.1.298 | 0.000862 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.1.328 | 0.016949 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.1.332 | 0.03125 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.1.373 | 0.02381 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.1.435 | 0.034483 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.1.47 | 0.005348 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.162 | 0.005025 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.177.10 | 0.000878 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.177.42 | 0.000894 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.177.5 | 0.001242 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.177.55 | 0.002331 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.177.72 | 0.00339 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.177.77 | 0.000726 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.177.79 | 0.002342 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.241 | 0.000812 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.258.11 | 0.000396 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.346 | 0.001311 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.349 | 0.000715 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.36.12 | 0.009615 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.36.31 | 0.001751 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.361 | 0.001289 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.369 | 0.000285 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.396 | 0.000706 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.399 | 0.001934 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.432 | 0.011236 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.459 | 0.004082 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.564 | 0.000426 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.593 | 0.01087 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.609 | 0.000479 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.1.9 | 0.006173 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | B.40 | 0.000364 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | C.16 | 0.00106 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | C.30.1 | 0.006711 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | P.1.10 | 0.000269 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | Q.1 | 0.000126 |
ORF3a | 60 | S60S | tcC | tcT | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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