CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 60

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a60S60SsyntcCtcT781170020.89642825570-25572
ORF3a60S60SsyntcCtcA78117840.10037125570-25572
ORF3a60S60SsyntcCtcG7811250.0032006125570-25572
ORF3a60S60FnonsyntCctTc42814281125570-25572
ORF3a60S60PnonsynTccCcc7327210.98497325570-25572
ORF3a60S60PnonsynTcCCcA73290.012295125570-25572
ORF3a60S60PnonsynTcCCcG73210.0013661225570-25572
ORF3a60S60PnonsynTcCCcT73210.0013661225570-25572
ORF3a60S60YnonsyntCctAc602602125570-25572
ORF3a60S60TnonsynTccAcc414414125570-25572
ORF3a60S60CnonsyntCctGc51500.98039225570-25572
ORF3a60S60CnonsyntCCtGT5110.019607825570-25572
ORF3a60S60AnonsynTccGcc49470.95918425570-25572
ORF3a60S60AnonsynTcCGcA4920.040816325570-25572
ORF3a60S60deldelTCC---4242125570-25572
ORF3a60S60LnonsynTCcCTc1190.81818225570-25572
ORF3a60S60LnonsynTCCCTG1110.090909125570-25572
ORF3a60S60LnonsyntCCtTA1110.090909125570-25572
ORF3a60S60NnonsynTCcAAc66125570-25572
ORF3a60S60InonsynTCcATc55125570-25572
ORF3a60S60del1deltCct-c320.66666725570-25572
ORF3a60S60del1deltcCtc-310.33333325570-25572
ORF3a60S60HnonsynTCcCAc22125570-25572
ORF3a60S60DnonsynTCcGAc22125570-25572
ORF3a60S60RnonsynTCCCGT210.525570-25572
ORF3a60S60RnonsynTCCCGG210.525570-25572
ORF3a60S60WnonsyntCCtGG11125570-25572
ORF3a60S60del2delTCc--c11125570-25572
ORF3a60S60VnonsynTCcGTc11125570-25572

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a60S60StcCtcT70027811All0.001339
ORF3a60S60StcCtcA7847811All0.00015
ORF3a60S60StcCtcG257811All0.000005
ORF3a60S60FtCctTc42814281All0.000819
ORF3a60S60StcCtcT25752677B.1.1.70.002305
ORF3a60S60StcCtcA852677B.1.1.70.000076
ORF3a60S60StcCtcG172677B.1.1.70.000015
ORF3a60S60FtCctTc16601660B.1.1.70.001486
ORF3a60S60PTccCcc721732All0.000138
ORF3a60S60PTcCCcA9732All0.000002
ORF3a60S60PTcCCcG1732All0
ORF3a60S60PTcCCcT1732All0
ORF3a60S60StcCtcT648712B.1.617.20.00244
ORF3a60S60StcCtcA64712B.1.617.20.000241
ORF3a60S60YtCctAc602602All0.000115
ORF3a60S60TTccAcc414414All0.000079
ORF3a60S60StcCtcT385399AY.430.001706
ORF3a60S60StcCtcA13399AY.430.000058
ORF3a60S60StcCtcG1399AY.430.000004
ORF3a60S60StcCtcT392392AY.5.20.965517
ORF3a60S60StcCtcT376376AY.480.174884
ORF3a60S60FtCctTc342342AY.460.035595
ORF3a60S60StcCtcT274314B.1.4290.006447
ORF3a60S60StcCtcA40314B.1.4290.000941
ORF3a60S60TTccAcc313313B.1.1.2220.063851
ORF3a60S60StcCtcA292294AY.610.030595
ORF3a60S60StcCtcT2294AY.610.00021
ORF3a60S60FtCctTc289289B.1.1.5190.011476
ORF3a60S60FtCctTc272272AY.40.000423
ORF3a60S60FtCctTc230230B.1.617.20.000866
ORF3a60S60StcCtcT192220AY.40.000299
ORF3a60S60StcCtcA27220AY.40.000042
ORF3a60S60StcCtcG1220AY.40.000002
ORF3a60S60YtCctAc206206B.1.1.1860.707904
ORF3a60S60StcCtcT172173B.1.1600.005364
ORF3a60S60StcCtcA1173B.1.1600.000031
ORF3a60S60YtCctAc170170AY.40.000265
ORF3a60S60PTccCcc145152B.1.1.70.00013
ORF3a60S60PTcCCcA7152B.1.1.70.000006
ORF3a60S60FtCctTc147147AY.440.000895
ORF3a60S60StcCtcT143144B.1.1770.001883
ORF3a60S60StcCtcA1144B.1.1770.000013
ORF3a60S60FtCctTc142142B.1.2340.018736
ORF3a60S60StcCtcA100137AY.1030.000621
ORF3a60S60StcCtcT36137AY.1030.000224
ORF3a60S60StcCtcG1137AY.1030.000006
ORF3a60S60StcCtcT125125B.350.976562
ORF3a60S60FtCctTc116116AY.1000.005337
ORF3a60S60StcCtcT116116B.1.3381
ORF3a60S60PTccCcc112112B.1.617.20.000422
ORF3a60S60PTccCcc110110AY.1020.002917
ORF3a60S60YtCctAc9696B.1.1.70.000086
ORF3a60S60FtCctTc9494B.1.1770.001238
ORF3a60S60StcCtcT9092AY.39.10.003565
ORF3a60S60StcCtcA292AY.39.10.000079
ORF3a60S60StcCtcT8484AH.30.319392
ORF3a60S60StcCtcT7079AY.440.000426
ORF3a60S60StcCtcA979AY.440.000055
ORF3a60S60StcCtcT6177B.1.20.000537
ORF3a60S60StcCtcA1677B.1.20.000141
ORF3a60S60FtCctTc7575P.10.001182
ORF3a60S60PTccCcc6868AY.1200.002528
ORF3a60S60StcCtcT6161B.1.2430.004245
ORF3a60S60FtCctTc5656AY.1030.000348
ORF3a60S60StcCtcT4654B.10.000421
ORF3a60S60StcCtcA854B.10.000073
ORF3a60S60FtCctTc5252B.1.1600.001622
ORF3a60S60StcCtcT4952P.10.000772
ORF3a60S60StcCtcA352P.10.000047
ORF3a60S60CtCctGc5051All0.00001
ORF3a60S60CtCCtGT151All0
ORF3a60S60FtCctTc5151B.1.20.000449
ORF3a60S60StcCtcT5050B.1.177.860.009173
ORF3a60S60ATccGcc4749All0.000009
ORF3a60S60ATcCGcA249All0
ORF3a60S60StcCtcT4246AY.250.000253
ORF3a60S60StcCtcA446AY.250.000024
ORF3a60S60FtCctTc4646AY.610.00482
ORF3a60S60FtCctTc4444AY.250.000265
ORF3a60S60StcCtcT4343B.1.36.290.022245
ORF3a60S60delTCC---4242All0.000008
ORF3a60S60FtCctTc4242B.10.000385
ORF3a60S60StcCtcT3740B.1.10.000671
ORF3a60S60StcCtcA340B.1.10.000054
ORF3a60S60StcCtcT3538AY.1020.000928
ORF3a60S60StcCtcA338AY.1020.00008
ORF3a60S60StcCtcT3838B.1.1.3110.01361
ORF3a60S60StcCtcT3436B.1.2210.002415
ORF3a60S60StcCtcA236B.1.2210.000142
ORF3a60S60StcCtcT3535B.1.564.10.055205
ORF3a60S60TTccAcc3434B.1.1.70.00003
ORF3a60S60StcCtcT3132AY.320.016507
ORF3a60S60StcCtcA132AY.320.000532
ORF3a60S60PTccCcc3232P.10.000504
ORF3a60S60FtCctTc3030AY.290.000473
ORF3a60S60FtCctTc3030B.1.2580.001996
ORF3a60S60StcCtcT2729AY.390.000667
ORF3a60S60StcCtcA229AY.390.000049
ORF3a60S60PTccCcc2727B.1.4060.163636
ORF3a60S60FtCctTc2727B.1.4290.000635
ORF3a60S60StcCtcT2426B.1.3510.000713
ORF3a60S60StcCtcA226B.1.3510.000059
ORF3a60S60StcCtcT2525B.1.438.10.002682
ORF3a60S60FtCctTc2424AY.200.000933
ORF3a60S60FtCctTc2424B.1.177.620.028605
ORF3a60S60StcCtcT2023AY.200.000777
ORF3a60S60StcCtcA323AY.200.000117
ORF3a60S60ATccGcc2323AY.40.000036
ORF3a60S60CtCctGc2222B.1.177.410.055
ORF3a60S60StcCtcT2021B.1.2580.001331
ORF3a60S60StcCtcA121B.1.2580.000067
ORF3a60S60FtCctTc2020AY.260.000566
ORF3a60S60StcCtcT2020B.1.1.4870.111732
ORF3a60S60PTccCcc2020B.1.1770.000263
ORF3a60S60FtCctTc1919AY.430.000084
ORF3a60S60FtCctTc1919B.1.10.000345
ORF3a60S60StcCtcT1519B.1.5260.000353
ORF3a60S60StcCtcA419B.1.5260.000094
ORF3a60S60PTccCcc1717AY.440.000103
ORF3a60S60StcCtcT1717B.1.2400.003665
ORF3a60S60StcCtcT1617B.1.6210.001416
ORF3a60S60StcCtcA117B.1.6210.000089
ORF3a60S60StcCtcT1216AY.30.000119
ORF3a60S60StcCtcA416AY.30.00004
ORF3a60S60FtCctTc1616AY.3.10.001364
ORF3a60S60StcCtcT1216AY.470.000373
ORF3a60S60StcCtcA416AY.470.000124
ORF3a60S60StcCtcT1016AY.630.003868
ORF3a60S60StcCtcA616AY.630.002321
ORF3a60S60CtCctGc1616B.1.1.70.000014
ORF3a60S60FtCctTc1616R.10.00144
ORF3a60S60FtCctTc1515AY.1200.000558
ORF3a60S60FtCctTc1515AY.30.000149
ORF3a60S60FtCctTc1515AY.390.000371
ORF3a60S60StcCtcT1515C.360.013661
ORF3a60S60StcCtcT1214AY.260.00034
ORF3a60S60StcCtcA214AY.260.000057
ORF3a60S60PTccCcc1414B.1.20.000123
ORF3a60S60FtCctTc1414B.1.3510.000416
ORF3a60S60StcCtcT1414B.1.5610.005558
ORF3a60S60FtCctTc1313B.1.1.2040.039514
ORF3a60S60YtCctAc1313B.1.617.20.000049
ORF3a60S60StcCtcT1213B.1.6370.000877
ORF3a60S60StcCtcA113B.1.6370.000073
ORF3a60S60StcCtcT1113C.370.001277
ORF3a60S60StcCtcA213C.370.000232
ORF3a60S60PTccCcc1212AY.390.000297
ORF3a60S60FtCctTc1212AY.410.003527
ORF3a60S60PTccCcc1212B.1.36.390.026608
ORF3a60S60StcCtcT1112B.1.4270.000555
ORF3a60S60StcCtcA112B.1.4270.00005
ORF3a60S60LTCcCTc911All0.000002
ORF3a60S60LtCCtTA111All0
ORF3a60S60LTCCCTG111All0
ORF3a60S60TTccAcc1111B.1.10.0002
ORF3a60S60PTccCcc1111B.1.1.5190.000437
ORF3a60S60YtCctAc1111B.1.20.000097
ORF3a60S60StcCtcT811B.1.360.001167
ORF3a60S60StcCtcA311B.1.360.000438
ORF3a60S60PTccCcc1010AY.330.000668
ORF3a60S60StcCtcA610AY.350.001398
ORF3a60S60StcCtcT410AY.350.000932
ORF3a60S60PTccCcc1010AY.430.000044
ORF3a60S60FtCctTc1010B.1.258.170.00104
ORF3a60S60FtCctTc1010C.370.001161
ORF3a60S60StcCtcT910D.20.000675
ORF3a60S60StcCtcA110D.20.000075
ORF3a60S60StcCtcA910N.50.015901
ORF3a60S60StcCtcT110N.50.001767
ORF3a60S60StcCtcT99AY.230.000628
ORF3a60S60StcCtcT79AY.290.00011
ORF3a60S60StcCtcA29AY.290.000032
ORF3a60S60PTccCcc99AY.30.00009
ORF3a60S60PTccCcc99AY.40.000014
ORF3a60S60TTccAcc99AY.430.00004
ORF3a60S60StcCtcT99AY.570.005906
ORF3a60S60delTCC---99B.1.1.70.000008
ORF3a60S60PTccCcc99B.1.2400.00194
ORF3a60S60StcCtcT99B.1.36.210.019438
ORF3a60S60YtCctAc99B.1.4290.000212
ORF3a60S60StcCtcT89B.1.5250.000905
ORF3a60S60StcCtcA19B.1.5250.000113
ORF3a60S60FtCctTc99B.1.6210.000797
ORF3a60S60PTccCcc88AY.39.10.000317
ORF3a60S60YtCctAc88AY.430.000035
ORF3a60S60StcCtcT88AY.460.000833
ORF3a60S60StcCtcT88AY.46.60.000578
ORF3a60S60StcCtcT88AY.620.003486
ORF3a60S60StcCtcT88AY.750.000448
ORF3a60S60PTccCcc88B.10.000073
ORF3a60S60StcCtcT88B.1.1.5190.000318
ORF3a60S60StcCtcT88B.1.351.20.002421
ORF3a60S60StcCtcA88B.1.4000.003432
ORF3a60S60YtCctAc88B.1.4530.02589
ORF3a60S60StcCtcT88B.1.5680.008889
ORF3a60S60StcCtcT88B.1.5950.002088
ORF3a60S60StcCtcT88B.1.6280.002819
ORF3a60S60FtCctTc77AY.1190.000247
ORF3a60S60FtCctTc77AY.620.00305
ORF3a60S60LTCcCTc77B.1.1.70.000006
ORF3a60S60FtCctTc77B.1.2430.000487
ORF3a60S60FtCctTc77B.1.4270.000353
ORF3a60S60FtCctTc77B.1.4970.002203
ORF3a60S60StcCtcT77B.1.5880.006369
ORF3a60S60StcCtcT77Q.80.001154
ORF3a60S60NTCcAAc66All0.000001
ORF3a60S60FtCctTc66AY.1020.000159
ORF3a60S60FtCctTc66AY.1180.000376
ORF3a60S60PTccCcc66AY.1190.000212
ORF3a60S60FtCctTc66AY.4.20.00013
ORF3a60S60StcCtcT56AY.4.20.000108
ORF3a60S60StcCtcA16AY.4.20.000022
ORF3a60S60PTccCcc66AY.950.004566
ORF3a60S60StcCtcT66B.1.440.05
ORF3a60S60FtCctTc66B.1.619.10.003849
ORF3a60S60PTccCcc66C.370.000696
ORF3a60S60StcCtcA55A.2.5.10.024038
ORF3a60S60ITCcATc55All0.000001
ORF3a60S60StcCtcT55AY.1000.00023
ORF3a60S60StcCtcT55AY.1170.000423
ORF3a60S60StcCtcT45AY.1200.000149
ORF3a60S60StcCtcA15AY.1200.000037
ORF3a60S60FtCctTc55AY.230.000349
ORF3a60S60StcCtcT45AY.330.000267
ORF3a60S60StcCtcA15AY.330.000067
ORF3a60S60StcCtcT55AY.580.004537
ORF3a60S60FtCctTc55AY.9.20.000184
ORF3a60S60FtCctTc55AY.980.000395
ORF3a60S60StcCtcA35AY.98.10.000145
ORF3a60S60StcCtcT25AY.98.10.000097
ORF3a60S60FtCctTc55AY.99.20.000461
ORF3a60S60TTccAcc55B.10.000046
ORF3a60S60StcCtcT55B.1.1.1580.060976
ORF3a60S60StcCtcT55B.1.1.2850.03268
ORF3a60S60FtCctTc55B.1.1.330.002104
ORF3a60S60YtCctAc55B.1.1770.000066
ORF3a60S60delTCC---55B.1.1770.000066
ORF3a60S60FtCctTc55B.1.177.560.003338
ORF3a60S60TTccAcc55B.1.2580.000333
ORF3a60S60FtCctTc55B.1.5600.023148
ORF3a60S60PTccCcc55B.1.6280.001762
ORF3a60S60StcCtcT55B.60.00455
ORF3a60S60ATccGcc240.111111
ORF3a60S60StcCtcA240.111111
ORF3a60S60StcCtcG240.111111
ORF3a60S60ATcCGcA240.111111
ORF3a60S60StcCtcT44AY.34.10.00204
ORF3a60S60delTCC---44AY.40.000006
ORF3a60S60FtCctTc44AY.4.50.00043
ORF3a60S60FtCctTc44AY.46.60.000289
ORF3a60S60StcCtcT44AY.5.40.001107
ORF3a60S60StcCtcT44AY.9.10.000335
ORF3a60S60FtCctTc44AY.98.10.000194
ORF3a60S60StcCtcT44AY.99.20.000369
ORF3a60S60FtCctTc44B0.000511
ORF3a60S60StcCtcT44B.1.1.1700.004988
ORF3a60S60StcCtcT44B.1.1.2140.000222
ORF3a60S60FtCctTc44B.1.1.2160.003562
ORF3a60S60StcCtcT44B.1.1.2220.000816
ORF3a60S60TTccAcc44B.1.1.2740.020202
ORF3a60S60StcCtcT44B.1.1.280.001245
ORF3a60S60FtCctTc44B.1.1.3060.001754
ORF3a60S60ATccGcc44B.1.1.70.000004
ORF3a60S60StcCtcT44B.1.1.700.001364
ORF3a60S60StcCtcT44B.1.177.540.002426
ORF3a60S60StcCtcT44B.1.214.20.002398
ORF3a60S60StcCtcT44B.1.258.170.000416
ORF3a60S60StcCtcT34B.1.36.180.001261
ORF3a60S60StcCtcA14B.1.36.180.00042
ORF3a60S60StcCtcT44B.1.4620.028986
ORF3a60S60StcCtcT44B.1.4980.081633
ORF3a60S60FtCctTc44B.1.5230.009804
ORF3a60S60ITCcATc44B.1.5250.000453
ORF3a60S60PTccCcc44B.1.5960.000349
ORF3a60S60StcCtcT34B.1.5960.000261
ORF3a60S60StcCtcA14B.1.5960.000087
ORF3a60S60StcCtcT24B.1.617.10.000258
ORF3a60S60StcCtcG24B.1.617.10.000258
ORF3a60S60StcCtcT44C.140.017316
ORF3a60S60StcCtcA44C.380.032258
ORF3a60S60StcCtcT44P.1.70.001277
ORF3a60S60FtCctTc44P.20.000747
ORF3a60S60FtCctTc44Q.30.00058
ORF3a60S60StcCtcT44W.40.005405
ORF3a60S60FtCctTc330.166667
ORF3a60S60FtCctTc33A0.001161
ORF3a60S60StcCtcT33A.290.015957
ORF3a60S60StcCtcT33AL.10.038961
ORF3a60S60del1tCct-c23All0
ORF3a60S60del1tcCtc-13All0
ORF3a60S60StcCtcA23AY.1050.001286
ORF3a60S60StcCtcT13AY.1050.000643
ORF3a60S60YtCctAc33AY.1160.00086
ORF3a60S60StcCtcA23AY.140.000176
ORF3a60S60StcCtcT13AY.140.000088
ORF3a60S60YtCctAc33AY.30.00003
ORF3a60S60StcCtcA33AY.300.001187
ORF3a60S60FtCctTc33AY.380.001498
ORF3a60S60ATccGcc33AY.390.000074
ORF3a60S60TTccAcc33AY.40.000005
ORF3a60S60YtCctAc33AY.4.20.000065
ORF3a60S60delTCC---33AY.4.50.000322
ORF3a60S60PTccCcc33AY.460.000312
ORF3a60S60YtCctAc33AY.470.000093
ORF3a60S60PTccCcc33AY.480.001395
ORF3a60S60FtCctTc33AY.50.000062
ORF3a60S60StcCtcT23AY.50.000041
ORF3a60S60StcCtcA13AY.50.000021
ORF3a60S60YtCctAc33AY.740.000347
ORF3a60S60StcCtcT33AY.840.001312
ORF3a60S60YtCctAc33B.10.000027
ORF3a60S60StcCtcT33B.1.1.10.00098
ORF3a60S60FtCctTc33B.1.1.1870.026549
ORF3a60S60StcCtcT33B.1.1.2160.002671
ORF3a60S60StcCtcT33B.1.1.330.001263
ORF3a60S60CtCctGc33B.1.1770.00004
ORF3a60S60StcCtcA33B.1.177.330.004934
ORF3a60S60FtCctTc33B.1.177.440.001557
ORF3a60S60StcCtcT23B.1.177.810.000379
ORF3a60S60StcCtcA13B.1.177.810.000189
ORF3a60S60FtCctTc33B.1.2210.000213
ORF3a60S60FtCctTc33B.1.351.30.002629
ORF3a60S60FtCctTc33B.1.36.10.003421
ORF3a60S60StcCtcT33B.1.3670.002377
ORF3a60S60FtCctTc33B.1.5750.00091
ORF3a60S60FtCctTc33B.1.5820.001472
ORF3a60S60YtCctAc33B.1.6090.001438
ORF3a60S60TTccAcc33B.1.617.20.000011
ORF3a60S60StcCtcT33B.1.6200.002838
ORF3a60S60YtCctAc33C.370.000348
ORF3a60S60StcCtcT23P.1.120.000968
ORF3a60S60StcCtcA13P.1.120.000484
ORF3a60S60PTccCcc33P.1.140.000143
ORF3a60S60StcCtcT33Q.30.000435
ORF3a60S60delTCC---33U.30.011583
ORF3a60S60PTcCCcA220.111111
ORF3a60S60YtCctAc22AL.10.025974
ORF3a60S60DTCcGAc22All0
ORF3a60S60HTCcCAc22All0
ORF3a60S60RTCCCGT12All0
ORF3a60S60RTCCCGG12All0
ORF3a60S60YtCctAc22AY.1030.000012
ORF3a60S60TTccAcc22AY.1030.000012
ORF3a60S60FtCctTc22AY.1090.001479
ORF3a60S60StcCtcT22AY.1100.000225
ORF3a60S60FtCctTc22AY.1130.000285
ORF3a60S60StcCtcT22AY.1130.000285
ORF3a60S60StcCtcT22AY.1160.000574
ORF3a60S60FtCctTc22AY.1170.000169
ORF3a60S60FtCctTc22AY.120.10.000642
ORF3a60S60YtCctAc22AY.1210.000271
ORF3a60S60StcCtcT22AY.160.000759
ORF3a60S60StcCtcT22AY.240.000862
ORF3a60S60PTccCcc22AY.250.000012
ORF3a60S60YtCctAc22AY.260.000057
ORF3a60S60YtCctAc22AY.290.000032
ORF3a60S60FtCctTc22AY.360.000296
ORF3a60S60StcCtcT12AY.380.000499
ORF3a60S60StcCtcA12AY.380.000499
ORF3a60S60FtCctTc22AY.4.2.10.000298
ORF3a60S60PTccCcc22AY.4.30.001684
ORF3a60S60FtCctTc22AY.420.00008
ORF3a60S60ATccGcc22AY.440.000012
ORF3a60S60PTccCcc22AY.450.000243
ORF3a60S60StcCtcT22AY.450.000243
ORF3a60S60StcCtcT22AY.46.50.000397
ORF3a60S60StcCtcT22AY.5.30.000675
ORF3a60S60StcCtcT22AY.540.000191
ORF3a60S60FtCctTc22AY.550.001835
ORF3a60S60StcCtcT22AY.650.001066
ORF3a60S60FtCctTc22AY.70.000392
ORF3a60S60FtCctTc22AY.7.10.000225
ORF3a60S60StcCtcA12AY.740.000116
ORF3a60S60StcCtcT12AY.740.000116
ORF3a60S60StcCtcT22AY.75.10.000361
ORF3a60S60FtCctTc22AY.75.10.000361
ORF3a60S60HTCcCAc22AY.810.003984
ORF3a60S60StcCtcT22AY.910.001461
ORF3a60S60StcCtcT22AY.930.000546
ORF3a60S60FtCctTc22AY.960.004149
ORF3a60S60StcCtcT22AY.980.000158
ORF3a60S60YtCctAc22AY.98.10.000097
ORF3a60S60RTCCCGT12AY.990.001049
ORF3a60S60PTcCCcG12AY.990.001049
ORF3a60S60PTcCCcT12AY.990.001049
ORF3a60S60StcCtcT12AY.990.001049
ORF3a60S60StcCtcG12AY.990.001049
ORF3a60S60RTCCCGG12AY.990.001049
ORF3a60S60YtCctAc22AY.99.20.000184
ORF3a60S60StcCtcT22AZ.50.007018
ORF3a60S60StcCtcT22B0.000256
ORF3a60S60delTCC---22B.10.000018
ORF3a60S60YtCctAc22B.1.10.000036
ORF3a60S60FtCctTc22B.1.1.2200.003717
ORF3a60S60YtCctAc22B.1.1.2270.008696
ORF3a60S60FtCctTc22B.1.1.3170.000823
ORF3a60S60TTccAcc22B.1.1.3480.001592
ORF3a60S60StcCtcT22B.1.1.4340.000697
ORF3a60S60StcCtcT22B.1.1.500.001358
ORF3a60S60TTccAcc22B.1.1.5170.013605
ORF3a60S60StcCtcT22B.1.1.890.012121
ORF3a60S60TTccAcc22B.1.1600.000062
ORF3a60S60StcCtcT22B.1.177.40.000422
ORF3a60S60FtCctTc22B.1.177.550.004662
ORF3a60S60CtCctGc22B.1.177.770.001452
ORF3a60S60StcCtcT22B.1.1990.008264
ORF3a60S60ATccGcc22B.1.20.000018
ORF3a60S60TTccAcc22B.1.20.000018
ORF3a60S60FtCctTc22B.1.2180.010309
ORF3a60S60StcCtcT22B.1.2320.001075
ORF3a60S60NTCcAAc22B.1.2340.000264
ORF3a60S60TTccAcc22B.1.2340.000264
ORF3a60S60YtCctAc22B.1.2340.000264
ORF3a60S60StcCtcT22B.1.3050.004301
ORF3a60S60StcCtcT22B.1.3110.000549
ORF3a60S60FtCctTc22B.1.360.000292
ORF3a60S60FtCctTc22B.1.36.240.012346
ORF3a60S60YtCctAc22B.1.3990.003868
ORF3a60S60StcCtcT22B.1.4160.002538
ORF3a60S60FtCctTc22B.1.416.10.003125
ORF3a60S60StcCtcT22B.1.4970.00063
ORF3a60S60StcCtcT22B.1.4990.002101
ORF3a60S60StcCtcT22B.1.5750.000607
ORF3a60S60FtCctTc22B.1.5960.000174
ORF3a60S60ATccGcc22B.1.617.20.000008
ORF3a60S60delTCC---22B.1.617.20.000008
ORF3a60S60FtCctTc22B.1.6230.001073
ORF3a60S60StcCtcT12C.36.10.004149
ORF3a60S60StcCtcA12C.36.10.004149
ORF3a60S60FtCctTc22D.20.00015
ORF3a60S60FtCctTc22N.90.011905
ORF3a60S60YtCctAc22P.10.000032
ORF3a60S60TTccAcc22P.10.000032
ORF3a60S60StcCtcA12P.1.140.000048
ORF3a60S60StcCtcT12P.1.140.000048
ORF3a60S60FtCctTc22P.1.170.000324
ORF3a60S60StcCtcT22P.1.40.001953
ORF3a60S60StcCtcT22P.20.000373
ORF3a60S60PTccCcc22R.10.00018
ORF3a60S60CtCctGc110.055556
ORF3a60S60CtCctGc11A0.000387
ORF3a60S60StcCtcT11A0.000387
ORF3a60S60ATccGcc11A.190.009434
ORF3a60S60StcCtcT11A.20.000662
ORF3a60S60StcCtcT11A.2.20.001689
ORF3a60S60StcCtcT11A.2.5.20.001572
ORF3a60S60FtCctTc11A.90.045455
ORF3a60S60delTCC---11AH.30.003802
ORF3a60S60WtCCtGG11All0
ORF3a60S60VTCcGTc11All0
ORF3a60S60del2TCc--c11All0
ORF3a60S60FtCctTc11AU.20.002421
ORF3a60S60YtCctAc11AY.1000.000046
ORF3a60S60ATccGcc11AY.1020.000027
ORF3a60S60YtCctAc11AY.1020.000027
ORF3a60S60PTccCcc11AY.1030.000006
ORF3a60S60CtCctGc11AY.1030.000006
ORF3a60S60PTccCcc11AY.1050.000643
ORF3a60S60StcCtcT11AY.1090.00074
ORF3a60S60delTCC---11AY.1110.000183
ORF3a60S60StcCtcT11AY.1110.000183
ORF3a60S60FtCctTc11AY.1110.000183
ORF3a60S60PTccCcc11AY.1160.000287
ORF3a60S60PTccCcc11AY.1170.000085
ORF3a60S60StcCtcT11AY.1180.000063
ORF3a60S60StcCtcT11AY.1190.000035
ORF3a60S60YtCctAc11AY.1190.000035
ORF3a60S60delTCC---11AY.1200.000037
ORF3a60S60YtCctAc11AY.1200.000037
ORF3a60S60StcCtcT11AY.120.10.000321
ORF3a60S60StcCtcT11AY.130.000161
ORF3a60S60FtCctTc11AY.160.00038
ORF3a60S60FtCctTc11AY.16.10.00047
ORF3a60S60FtCctTc11AY.20.000356
ORF3a60S60PTccCcc11AY.200.000039
ORF3a60S60TTccAcc11AY.230.00007
ORF3a60S60delTCC---11AY.230.00007
ORF3a60S60CtCctGc11AY.250.000006
ORF3a60S60YtCctAc11AY.250.000006
ORF3a60S60PTccCcc11AY.260.000028
ORF3a60S60TTccAcc11AY.260.000028
ORF3a60S60FtCctTc11AY.270.000065
ORF3a60S60StcCtcT11AY.270.000065
ORF3a60S60ATccGcc11AY.280.00189
ORF3a60S60FtCctTc11AY.280.00189
ORF3a60S60PTccCcc11AY.290.000016
ORF3a60S60ATccGcc11AY.30.00001
ORF3a60S60TTccAcc11AY.30.00001
ORF3a60S60FtCctTc11AY.320.000532
ORF3a60S60StcCtcT11AY.340.000097
ORF3a60S60PTccCcc11AY.34.10.00051
ORF3a60S60YtCctAc11AY.360.000148
ORF3a60S60PTccCcc11AY.360.000148
ORF3a60S60StcCtcT11AY.370.000316
ORF3a60S60YtCctAc11AY.390.000025
ORF3a60S60delTCC---11AY.390.000025
ORF3a60S60TTccAcc11AY.39.10.00004
ORF3a60S60StcCtcT11AY.39.20.001541
ORF3a60S60ATccGcc11AY.4.20.000022
ORF3a60S60StcCtcT11AY.4.2.10.000149
ORF3a60S60StcCtcT11AY.4.50.000107
ORF3a60S60StcCtcT11AY.400.000964
ORF3a60S60StcCtcT11AY.410.000294
ORF3a60S60StcCtcT11AY.420.00004
ORF3a60S60ATccGcc11AY.430.000004
ORF3a60S60delTCC---11AY.430.000004
ORF3a60S60del1tcCtc-11AY.440.000006
ORF3a60S60YtCctAc11AY.440.000006
ORF3a60S60delTCC---11AY.440.000006
ORF3a60S60FtCctTc11AY.46.40.000165
ORF3a60S60PTccCcc11AY.46.60.000072
ORF3a60S60YtCctAc11AY.46.60.000072
ORF3a60S60PTccCcc11AY.470.000031
ORF3a60S60YtCctAc11AY.50.000021
ORF3a60S60PTccCcc11AY.5.40.000277
ORF3a60S60StcCtcT11AY.510.000909
ORF3a60S60StcCtcT11AY.530.000288
ORF3a60S60FtCctTc11AY.540.000095
ORF3a60S60FtCctTc11AY.570.000656
ORF3a60S60YtCctAc11AY.570.000656
ORF3a60S60PTccCcc11AY.580.000907
ORF3a60S60FtCctTc11AY.590.00053
ORF3a60S60PTccCcc11AY.60.000041
ORF3a60S60FtCctTc11AY.60.000041
ORF3a60S60LtCCtTA11AY.610.000105
ORF3a60S60YtCctAc11AY.610.000105
ORF3a60S60TTccAcc11AY.610.000105
ORF3a60S60FtCctTc11AY.650.000533
ORF3a60S60StcCtcT11AY.670.000464
ORF3a60S60FtCctTc11AY.670.000464
ORF3a60S60YtCctAc11AY.680.000274
ORF3a60S60StcCtcT11AY.690.000187
ORF3a60S60YtCctAc11AY.7.10.000113
ORF3a60S60FtCctTc11AY.710.000475
ORF3a60S60TTccAcc11AY.730.000665
ORF3a60S60FtCctTc11AY.750.000056
ORF3a60S60YtCctAc11AY.75.10.00018
ORF3a60S60FtCctTc11AY.790.001211
ORF3a60S60FtCctTc11AY.80.000606
ORF3a60S60StcCtcT11AY.800.001129
ORF3a60S60FtCctTc11AY.830.001724
ORF3a60S60FtCctTc11AY.840.000437
ORF3a60S60TTccAcc11AY.850.000427
ORF3a60S60PTccCcc11AY.880.000884
ORF3a60S60FtCctTc11AY.9.10.000084
ORF3a60S60PTccCcc11AY.9.20.000037
ORF3a60S60StcCtcT11AY.9.20.000037
ORF3a60S60YtCctAc11AY.9.20.000037
ORF3a60S60delTCC---11AY.9.20.000037
ORF3a60S60StcCtcT11AY.950.000761
ORF3a60S60CtCCtGT11AY.990.001049
ORF3a60S60WtCCtGG11AY.990.001049
ORF3a60S60StcCtcT11AY.99.10.001553
ORF3a60S60StcCtcT11AZ.10.000867
ORF3a60S60StcCtcT11AZ.20.000821
ORF3a60S60StcCtcT11AZ.30.00152
ORF3a60S60PTccCcc11B.1.10.000018
ORF3a60S60FtCctTc11B.1.1.10.000327
ORF3a60S60StcCtcT11B.1.1.100.001115
ORF3a60S60StcCtcA11B.1.1.1210.002427
ORF3a60S60StcCtcT11B.1.1.1330.008475
ORF3a60S60StcCtcT11B.1.1.1360.021277
ORF3a60S60LTCCCTG11B.1.1.1390.022727
ORF3a60S60FtCctTc11B.1.1.1410.002012
ORF3a60S60StcCtcT11B.1.1.1480.008772
ORF3a60S60StcCtcT11B.1.1.1520.04
ORF3a60S60StcCtcT11B.1.1.1890.001513
ORF3a60S60FtCctTc11B.1.1.1890.001513
ORF3a60S60StcCtcT11B.1.1.2040.00304
ORF3a60S60StcCtcT11B.1.1.2070.001182
ORF3a60S60FtCctTc11B.1.1.2070.001182
ORF3a60S60FtCctTc11B.1.1.2140.000055
ORF3a60S60StcCtcT11B.1.1.2200.001859
ORF3a60S60PTccCcc11B.1.1.2220.000204
ORF3a60S60FtCctTc11B.1.1.2220.000204
ORF3a60S60YtCctAc11B.1.1.2310.003096
ORF3a60S60StcCtcT11B.1.1.2410.00207
ORF3a60S60FtCctTc11B.1.1.250.000569
ORF3a60S60StcCtcT11B.1.1.250.000569
ORF3a60S60FtCctTc11B.1.1.2540.011236
ORF3a60S60FtCctTc11B.1.1.270.00565
ORF3a60S60FtCctTc11B.1.1.2720.005208
ORF3a60S60StcCtcT11B.1.1.2770.000759
ORF3a60S60FtCctTc11B.1.1.2790.001121
ORF3a60S60FtCctTc11B.1.1.2840.000107
ORF3a60S60FtCctTc11B.1.1.290.010309
ORF3a60S60StcCtcT11B.1.1.2940.001266
ORF3a60S60StcCtcT11B.1.1.2980.000862
ORF3a60S60PTccCcc11B.1.1.3010.001179
ORF3a60S60StcCtcT11B.1.1.3060.000438
ORF3a60S60StcCtcA11B.1.1.3170.000412
ORF3a60S60StcCtcT11B.1.1.3180.000302
ORF3a60S60StcCtcT11B.1.1.3280.016949
ORF3a60S60FtCctTc11B.1.1.3290.003846
ORF3a60S60StcCtcT11B.1.1.3320.03125
ORF3a60S60StcCtcA11B.1.1.3690.000446
ORF3a60S60StcCtcT11B.1.1.3720.000689
ORF3a60S60StcCtcT11B.1.1.3730.02381
ORF3a60S60StcCtcT11B.1.1.390.00051
ORF3a60S60FtCctTc11B.1.1.3980.003226
ORF3a60S60FtCctTc11B.1.1.4090.002833
ORF3a60S60delTCC---11B.1.1.4090.002833
ORF3a60S60YtCctAc11B.1.1.4090.002833
ORF3a60S60FtCctTc11B.1.1.4220.045455
ORF3a60S60StcCtcT11B.1.1.4350.034483
ORF3a60S60StcCtcT11B.1.1.4480.002033
ORF3a60S60StcCtcT11B.1.1.470.005348
ORF3a60S60TTccAcc11B.1.1.5190.00004
ORF3a60S60YtCctAc11B.1.1.5190.00004
ORF3a60S60StcCtcT11B.1.1.630.000386
ORF3a60S60del2TCc--c11B.1.1.70.000001
ORF3a60S60YtCctAc11B.1.1.700.000341
ORF3a60S60PTccCcc11B.1.1110.001175
ORF3a60S60FtCctTc11B.1.1280.000635
ORF3a60S60YtCctAc11B.1.1600.000031
ORF3a60S60PTccCcc11B.1.1600.000031
ORF3a60S60delTCC---11B.1.160.70.002079
ORF3a60S60StcCtcT11B.1.1620.005025
ORF3a60S60TTccAcc11B.1.1770.000013
ORF3a60S60ATccGcc11B.1.1770.000013
ORF3a60S60DTCcGAc11B.1.1770.000013
ORF3a60S60StcCtcT11B.1.177.100.000878
ORF3a60S60StcCtcT11B.1.177.120.000152
ORF3a60S60CtCctGc11B.1.177.200.001517
ORF3a60S60YtCctAc11B.1.177.210.000076
ORF3a60S60PTccCcc11B.1.177.230.003236
ORF3a60S60PTccCcc11B.1.177.240.001295
ORF3a60S60FtCctTc11B.1.177.350.000691
ORF3a60S60StcCtcT11B.1.177.420.000894
ORF3a60S60StcCtcT11B.1.177.50.001242
ORF3a60S60StcCtcT11B.1.177.550.002331
ORF3a60S60StcCtcA11B.1.177.560.000668
ORF3a60S60PTccCcc11B.1.177.560.000668
ORF3a60S60StcCtcT11B.1.177.570.000281
ORF3a60S60PTccCcc11B.1.177.600.000218
ORF3a60S60YtCctAc11B.1.177.650.000665
ORF3a60S60StcCtcA11B.1.177.670.007634
ORF3a60S60StcCtcT11B.1.177.70.000165
ORF3a60S60StcCtcT11B.1.177.720.00339
ORF3a60S60FtCctTc11B.1.177.730.000566
ORF3a60S60StcCtcT11B.1.177.770.000726
ORF3a60S60StcCtcT11B.1.177.790.002342
ORF3a60S60FtCctTc11B.1.177.80.000752
ORF3a60S60FtCctTc11B.1.177.800.001912
ORF3a60S60FtCctTc11B.1.177.810.000189
ORF3a60S60PTccCcc11B.1.1820.007246
ORF3a60S60CtCctGc11B.1.20.000009
ORF3a60S60NTCcAAc11B.1.20.000009
ORF3a60S60FtCctTc11B.1.214.30.007143
ORF3a60S60del1tCct-c11B.1.2210.000071
ORF3a60S60YtCctAc11B.1.2210.000071
ORF3a60S60DTCcGAc11B.1.2340.000132
ORF3a60S60ATccGcc11B.1.2340.000132
ORF3a60S60ITCcATc11B.1.2340.000132
ORF3a60S60VTCcGTc11B.1.2340.000132
ORF3a60S60FtCctTc11B.1.2370.004975
ORF3a60S60FtCctTc11B.1.2400.000216
ORF3a60S60FtCctTc11B.1.2410.000812
ORF3a60S60StcCtcT11B.1.2410.000812
ORF3a60S60TTccAcc11B.1.2430.00007
ORF3a60S60NTCcAAc11B.1.2430.00007
ORF3a60S60YtCctAc11B.1.2430.00007
ORF3a60S60FtCctTc11B.1.2470.014925
ORF3a60S60PTccCcc11B.1.2580.000067
ORF3a60S60PTccCcc11B.1.258.100.011364
ORF3a60S60StcCtcT11B.1.258.110.000396
ORF3a60S60FtCctTc11B.1.2650.001271
ORF3a60S60StcCtcT11B.1.3460.001311
ORF3a60S60StcCtcT11B.1.3490.000715
ORF3a60S60delTCC---11B.1.3510.00003
ORF3a60S60PTccCcc11B.1.3510.00003
ORF3a60S60PTccCcc11B.1.351.30.000876
ORF3a60S60StcCtcT11B.1.351.30.000876
ORF3a60S60LTCcCTc11B.1.360.000146
ORF3a60S60StcCtcA11B.1.36.100.004785
ORF3a60S60StcCtcT11B.1.36.120.009615
ORF3a60S60FtCctTc11B.1.36.200.016949
ORF3a60S60del1tCct-c11B.1.36.290.000517
ORF3a60S60StcCtcT11B.1.36.310.001751
ORF3a60S60StcCtcT11B.1.3610.001289
ORF3a60S60YtCctAc11B.1.3690.000285
ORF3a60S60FtCctTc11B.1.3690.000285
ORF3a60S60TTccAcc11B.1.3690.000285
ORF3a60S60NTCcAAc11B.1.3690.000285
ORF3a60S60StcCtcT11B.1.3690.000285
ORF3a60S60FtCctTc11B.1.3750.00082
ORF3a60S60StcCtcT11B.1.3960.000706
ORF3a60S60StcCtcA11B.1.3980.002976
ORF3a60S60StcCtcT11B.1.3990.001934
ORF3a60S60FtCctTc11B.1.4040.001302
ORF3a60S60TTccAcc11B.1.4290.000024
ORF3a60S60PTccCcc11B.1.4290.000024
ORF3a60S60StcCtcT11B.1.4320.011236
ORF3a60S60StcCtcA11B.1.4500.011364
ORF3a60S60StcCtcT11B.1.4590.004082
ORF3a60S60FtCctTc11B.1.4650.003802
ORF3a60S60StcCtcT11B.1.466.20.000391
ORF3a60S60FtCctTc11B.1.4990.00105
ORF3a60S60FtCctTc11B.1.5170.000427
ORF3a60S60PTccCcc11B.1.5250.000113
ORF3a60S60PTccCcc11B.1.5260.000024
ORF3a60S60FtCctTc11B.1.5260.000024
ORF3a60S60ATccGcc11B.1.5510.00129
ORF3a60S60FtCctTc11B.1.5610.000397
ORF3a60S60StcCtcT11B.1.5640.000426
ORF3a60S60FtCctTc11B.1.5680.001111
ORF3a60S60StcCtcT11B.1.5930.01087
ORF3a60S60StcCtcT11B.1.6090.000479
ORF3a60S60NTCcAAc11B.1.617.10.000129
ORF3a60S60PTccCcc11B.1.621.10.000506
ORF3a60S60FtCctTc11B.1.621.10.000506
ORF3a60S60CtCctGc11B.1.6370.000073
ORF3a60S60delTCC---11B.1.6380.052632
ORF3a60S60StcCtcT11B.1.90.006173
ORF3a60S60StcCtcA11B.100.008264
ORF3a60S60delTCC---11B.400.000364
ORF3a60S60StcCtcT11B.400.000364
ORF3a60S60TTccAcc11B.460.020833
ORF3a60S60FtCctTc11B.6.30.026316
ORF3a60S60StcCtcA11B.600.015873
ORF3a60S60FtCctTc11C.10.002392
ORF3a60S60StcCtcT11C.160.00106
ORF3a60S60FtCctTc11C.260.007353
ORF3a60S60StcCtcT11C.30.10.006711
ORF3a60S60FtCctTc11C.36.30.000567
ORF3a60S60FtCctTc11C.80.004464
ORF3a60S60FtCctTc11N.50.001767
ORF3a60S60StcCtcT11P.1.100.000269
ORF3a60S60FtCctTc11P.1.120.000484
ORF3a60S60FtCctTc11P.1.130.000898
ORF3a60S60delTCC---11P.1.150.000232
ORF3a60S60FtCctTc11P.1.150.000232
ORF3a60S60YtCctAc11P.1.60.001946
ORF3a60S60FtCctTc11P.40.003802
ORF3a60S60FtCctTc11Q.10.000126
ORF3a60S60StcCtcT11Q.10.000126
ORF3a60S60StcCtcA11Q.40.000455
ORF3a60S60LTCcCTc11Q.80.000165
ORF3a60S60YtCctAc11Q.80.000165
ORF3a60S60StcCtcT11R.10.00009