CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 57 & Codon = caC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a57Q57HnonsyncaGcaC51589617570.0034057325561-25563

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a57Q57HcaGcaC1757515896All0.000336
ORF3a57Q57HcaGcaC2112571B.1.20.000018
ORF3a57Q57HcaGcaC4353227B.10.000394
ORF3a57Q57HcaGcaC442312B.1.4290.000094
ORF3a57Q57HcaGcaC132707B.1.3510.00003
ORF3a57Q57HcaGcaC230132B.1.1600.000062
ORF3a57Q57HcaGcaC311248B.1.6210.000266
ORF3a57Q57HcaGcaC310710B.1.5960.000261
ORF3a57Q57HcaGcaC16777B.1.360.000146
ORF3a57Q57HcaGcaC23170B.1.4970.00063
ORF3a57Q57HcaGcaC21993B.1.5820.000981
ORF3a57Q57HcaGcaC31972B.1.621.10.001517
ORF3a57Q57HcaGcaC11796B.1.6230.000536
ORF3a57Q57HcaGcaC7551493B.1.1.70.000676
ORF3a57Q57HcaGcaC351118P.10.000551
ORF3a57Q57HcaGcaC321011AY.40.00005
ORF3a57Q57HcaGcaC39804B.1.10.000707
ORF3a57Q57HcaGcaC1773B.1.2650.001271
ORF3a57Q57HcaGcaC49749AY.430.000217
ORF3a57Q57HcaGcaC13323AY.440.000079
ORF3a57Q57HcaGcaC1301B.1.4330.003195
ORF3a57Q57HcaGcaC42266B.1.617.20.000158
ORF3a57Q57HcaGcaC179182AY.420.007201
ORF3a57Q57HcaGcaC68157AY.1030.000422
ORF3a57Q57HcaGcaC27150B.1.1770.000356
ORF3a57Q57HcaGcaC1132B.1.6320.006711
ORF3a57Q57HcaGcaC16114B.1.2580.001065
ORF3a57Q57HcaGcaC695B.1.2430.000418
ORF3a57Q57HcaGcaC1182B.1.2210.000781
ORF3a57Q57HcaGcaC2169AY.250.000126
ORF3a57Q57HcaGcaC266B.1.1.2200.003717
ORF3a57Q57HcaGcaC2258AY.260.000623
ORF3a57Q57HcaGcaC458B.1.1.5190.000159
ORF3a57Q57HcaGcaC258B.1.2340.000264
ORF3a57Q57HcaGcaC953AY.230.000628
ORF3a57Q57HcaGcaC1551AY.1020.000398
ORF3a57Q57HcaGcaC4343B.1.1.2831
ORF3a57Q57HcaGcaC2643B.1.1.4320.032911
ORF3a57Q57HcaGcaC342AY.390.000074
ORF3a57Q57HcaGcaC141B.1.177.70.000165
ORF3a57Q57HcaGcaC139AY.4.50.000107
ORF3a57Q57HcaGcaC139B.1.3960.000706
ORF3a57Q57HcaGcaC938AY.30.00009
ORF3a57Q57HcaGcaC331B.1.2390.003663
ORF3a57Q57HcaGcaC626AY.4.20.00013
ORF3a57Q57HcaGcaC126AY.50.000021
ORF3a57Q57HcaGcaC823B.1.2400.001725
ORF3a57Q57HcaGcaC422B.1.1.700.001364
ORF3a57Q57HcaGcaC1820AY.880.015915
ORF3a57Q57HcaGcaC418AY.200.000155
ORF3a57Q57HcaGcaC1018C.370.001161
ORF3a57Q57HcaGcaC518Q.80.000825
ORF3a57Q57HcaGcaC717AY.1000.000322
ORF3a57Q57HcaGcaC117B.1.1.4160.000905
ORF3a57Q57HcaGcaC1717B.1.1.4200.017103
ORF3a57Q57HcaGcaC217P.1.140.000096
ORF3a57Q57HcaGcaC1416B.1.1.3060.006138
ORF3a57Q57HcaGcaC615AY.290.000095
ORF3a57Q57HcaGcaC315B.1.1.2630.004673
ORF3a57Q57HcaGcaC714AY.470.000218
ORF3a57Q57HcaGcaC714B.1.1.2140.000388
ORF3a57Q57HcaGcaC114B.1.1.2220.000204
ORF3a57Q57HcaGcaC514B.1.617.10.000645
ORF3a57Q57HcaGcaC212AY.330.000134
ORF3a57Q57HcaGcaC612AY.610.000629
ORF3a57Q57HcaGcaC112R.10.00009
ORF3a57Q57HcaGcaC911AY.46.40.001481
ORF3a57Q57HcaGcaC210AY.1200.000074
ORF3a57Q57HcaGcaC210B.1.1.2160.001781
ORF3a57Q57HcaGcaC39AY.450.000365
ORF3a57Q57HcaGcaC29B.1.177.810.000379
ORF3a57Q57HcaGcaC39B.1.5250.000339
ORF3a57Q57HcaGcaC28AY.60.000082
ORF3a57Q57HcaGcaC17AY.540.000095
ORF3a57Q57HcaGcaC77AY.7.10.000789
ORF3a57Q57HcaGcaC67B.1.177.820.002864
ORF3a57Q57HcaGcaC37B.1.2410.002435
ORF3a57Q57HcaGcaC17B.1.80.001972
ORF3a57Q57HcaGcaC26AY.1160.000574
ORF3a57Q57HcaGcaC16AY.1210.000135
ORF3a57Q57HcaGcaC16AY.300.000396
ORF3a57Q57HcaGcaC16AY.340.000097
ORF3a57Q57HcaGcaC26AY.9.20.000073
ORF3a57Q57HcaGcaC16B.1.6280.000352
ORF3a57Q57HcaGcaC16C.160.00106
ORF3a57Q57HcaGcaC15B.1.1.3720.000689
ORF3a57Q57HcaGcaC15B.1.1030.019231
ORF3a57Q57HcaGcaC45B.1.177.570.001124
ORF3a57Q57HcaGcaC35B.1.6200.002838
ORF3a57Q57HcaGcaC15B.1.940.027027
ORF3a57Q57HcaGcaC15Q.10.000126
ORF3a57Q57HcaGcaC14AY.1190.000035
ORF3a57Q57HcaGcaC14AY.90.000068
ORF3a57Q57HcaGcaC14B.1.1890.004292
ORF3a57Q57HcaGcaC14B.1.2100.002132
ORF3a57Q57HcaGcaC44P.1.20.004624
ORF3a57Q57HcaGcaC13AY.1060.000335
ORF3a57Q57HcaGcaC23AY.130.000322
ORF3a57Q57HcaGcaC13AY.240.000431
ORF3a57Q57HcaGcaC33AY.270.000194
ORF3a57Q57HcaGcaC13AY.320.000532
ORF3a57Q57HcaGcaC23AY.46.60.000144
ORF3a57Q57HcaGcaC33AY.99.20.000276
ORF3a57Q57HcaGcaC33B.1.1.1760.001318
ORF3a57Q57HcaGcaC33B.1.177.40.000633
ORF3a57Q57HcaGcaC23B.1.177.420.001789
ORF3a57Q57HcaGcaC13Q.70.001111
ORF3a57Q57HcaGcaC12AY.120.000316
ORF3a57Q57HcaGcaC12AY.350.000233
ORF3a57Q57HcaGcaC12AY.480.000465
ORF3a57Q57HcaGcaC12AY.620.000436
ORF3a57Q57HcaGcaC22AY.890.009804
ORF3a57Q57HcaGcaC12AY.980.000079
ORF3a57Q57HcaGcaC22B.1.1.2400.00939
ORF3a57Q57HcaGcaC12B.1.1.250.000569
ORF3a57Q57HcaGcaC12B.1.1.3180.000302
ORF3a57Q57HcaGcaC22P.1.40.001953
ORF3a57Q57HcaGcaC11AY.120.2.10.000498
ORF3a57Q57HcaGcaC11AY.730.000665
ORF3a57Q57HcaGcaC11AY.740.000116
ORF3a57Q57HcaGcaC11AY.940.000443
ORF3a57Q57HcaGcaC11B.1.1.1740.003378
ORF3a57Q57HcaGcaC11B.1.1.4090.002833
ORF3a57Q57HcaGcaC11B.1.1.4170.002703
ORF3a57Q57HcaGcaC11B.1.1.4400.011765
ORF3a57Q57HcaGcaC11B.1.1.5160.066667
ORF3a57Q57HcaGcaC11B.1.1.590.006494
ORF3a57Q57HcaGcaC11B.1.177.850.005435
ORF3a57Q57HcaGcaC11B.1.6000.005848
ORF3a57Q57HcaGcaC11B.290.003509
ORF3a57Q57HcaGcaC11B.560.028571

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.