CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 53

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a53L53FnonsynCttTtt10395103920.99971125549-25551
ORF3a53L53FnonsynCtTTtC1039530.000288625549-25551
ORF3a53L53LsynctTctA10287000.68093425549-25551
ORF3a53L53LsynctTctC10282990.29085625549-25551
ORF3a53L53LsynctTctG1028260.025291825549-25551
ORF3a53L53LsynCtTTtG102820.0019455325549-25551
ORF3a53L53LsynCtTTtA102810.00097276325549-25551
ORF3a53L53InonsynCttAtt153153125549-25551
ORF3a53L53HnonsyncTtcAt143143125549-25551
ORF3a53L53deldelCTT---118118125549-25551
ORF3a53L53VnonsynCttGtt7575125549-25551
ORF3a53L53del2delcTTc--4646125549-25551
ORF3a53L53PnonsyncTtcCt1616125549-25551
ORF3a53L53RnonsyncTtcGt1313125549-25551
ORF3a53L53del1delCtt-tt1370.53846225549-25551
ORF3a53L53del1delcTtc-t1330.23076925549-25551
ORF3a53L53del1delctTct-1320.15384625549-25551
ORF3a53L53del1delCtTTt-1310.076923125549-25551
ORF3a53L53SnonsynCTtTCt22125549-25551
ORF3a53L53CnonsynCTtTGt22125549-25551
ORF3a53L53AnonsynCTtGCt11125549-25551

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a53L53FCttTtt1039210395All0.001988
ORF3a53L53FCtTTtC310395All0.000001
ORF3a53L53FCttTtt16341634AY.10.646617
ORF3a53L53FCttTtt14461446B.1.1.70.001294
ORF3a53L53LctTctA7001028All0.000134
ORF3a53L53LctTctC2991028All0.000057
ORF3a53L53LctTctG261028All0.000005
ORF3a53L53LCtTTtG21028All0
ORF3a53L53LCtTTtA11028All0
ORF3a53L53FCttTtt731731B.1.617.20.002753
ORF3a53L53FCttTtt719719AY.40.001119
ORF3a53L53FCttTtt605605B.10.005542
ORF3a53L53FCttTtt440440AY.250.002647
ORF3a53L53LctTctA347357B.1.617.20.001307
ORF3a53L53LctTctC10357B.1.617.20.000038
ORF3a53L53FCttTtt285285AY.120.090076
ORF3a53L53FCttTtt283283AY.430.001254
ORF3a53L53FCttTtt281282AY.440.00171
ORF3a53L53FCtTTtC1282AY.440.000006
ORF3a53L53FCttTtt233233AY.50.004811
ORF3a53L53FCttTtt204204AY.30.002029
ORF3a53L53FCttTtt181181B.1.20.001594
ORF3a53L53FCttTtt168168B.1.1770.002212
ORF3a53L53FCttTtt167167AY.1030.001037
ORF3a53L53FCttTtt156156AY.34.10.079551
ORF3a53L53ICttAtt153153All0.000029
ORF3a53L53FCttTtt147147AY.1020.003898
ORF3a53L53HcTtcAt143143All0.000027
ORF3a53L53HcTtcAt139139B.10.001273
ORF3a53L53delCTT---118118All0.000023
ORF3a53L53FCttTtt102102AY.360.015118
ORF3a53L53FCttTtt9898AY.99.20.009031
ORF3a53L53LctTctC9595C.370.011026
ORF3a53L53FCttTtt9494B.1.10.001705
ORF3a53L53FCttTtt9090AY.4.20.001952
ORF3a53L53LctTctA8485AY.1020.002227
ORF3a53L53LctTctC185AY.1020.000027
ORF3a53L53FCttTtt7777AY.390.001903
ORF3a53L53VCttGtt7575All0.000014
ORF3a53L53FCttTtt7575B.1.1600.002339
ORF3a53L53FCttTtt7575P.10.001182
ORF3a53L53FCttTtt6969AY.200.002682
ORF3a53L53FCttTtt6161AY.1170.005156
ORF3a53L53FCttTtt5959AY.280.111531
ORF3a53L53LctTctA5359AY.430.000235
ORF3a53L53LctTctC559AY.430.000022
ORF3a53L53LctTctG159AY.430.000004
ORF3a53L53FCttTtt5656B.1.5260.001316
ORF3a53L53FCttTtt5353AY.290.000836
ORF3a53L53FCttTtt5252B.1.3370.290503
ORF3a53L53LctTctA4547AY.390.001112
ORF3a53L53LctTctC247AY.390.000049
ORF3a53L53del2cTTc--4646All0.000009
ORF3a53L53LctTctA4546B.1.4290.001059
ORF3a53L53LCtTTtA146B.1.4290.000024
ORF3a53L53FCttTtt4545AY.690.0084
ORF3a53L53LctTctC2445B.1.1.70.000021
ORF3a53L53LctTctA1845B.1.1.70.000016
ORF3a53L53LctTctG345B.1.1.70.000003
ORF3a53L53FCttTtt4444AY.260.001246
ORF3a53L53FCttTtt4242AY.46.60.003033
ORF3a53L53FCttTtt4242AY.990.044071
ORF3a53L53FCttTtt4242B.1.110.30.030172
ORF3a53L53ICttAtt3535AY.40.000054
ORF3a53L53FCttTtt3535B.1.2430.002435
ORF3a53L53FCttTtt3131B.1.4000.013299
ORF3a53L53FCttTtt3030AY.1180.001879
ORF3a53L53FCttTtt3030AY.270.001942
ORF3a53L53LctTctC2130AY.40.000033
ORF3a53L53LctTctA830AY.40.000012
ORF3a53L53LctTctG130AY.40.000002
ORF3a53L53LctTctC2930AY.540.002765
ORF3a53L53LctTctA130AY.540.000095
ORF3a53L53FCttTtt3030B.1.1.5190.001191
ORF3a53L53FCttTtt2929AY.700.006047
ORF3a53L53LctTctG1629B.10.000147
ORF3a53L53LctTctC829B.10.000073
ORF3a53L53LctTctA529B.10.000046
ORF3a53L53FCttTtt2828B.1.2190.264151
ORF3a53L53FCttTtt2727AY.1130.003845
ORF3a53L53FCttTtt2727AY.1200.001004
ORF3a53L53FCttTtt2525AY.1000.00115
ORF3a53L53LctTctA2525AY.1200.000929
ORF3a53L53FCttTtt2424AY.1190.000847
ORF3a53L53FCttTtt2424AY.750.001345
ORF3a53L53ICttAtt2424B.1.1.2630.037383
ORF3a53L53FCttTtt2424B.1.4290.000565
ORF3a53L53LctTctA1822AY.1030.000112
ORF3a53L53LctTctC422AY.1030.000025
ORF3a53L53FCttTtt2222AY.1060.007368
ORF3a53L53FCttTtt2022B.1.2580.001331
ORF3a53L53FCtTTtC222B.1.2580.000133
ORF3a53L53FCttTtt2222C.370.002553
ORF3a53L53FCttTtt2121AY.330.001402
ORF3a53L53FCttTtt2121AY.470.000653
ORF3a53L53FCttTtt2020AY.120.20.025707
ORF3a53L53FCttTtt2020B.1.177.570.00562
ORF3a53L53LctTctC1919B.1.2580.001264
ORF3a53L53FCttTtt1818AY.640.010714
ORF3a53L53VCttGtt1717AY.250.000102
ORF3a53L53FCttTtt1717AY.460.001769
ORF3a53L53FCttTtt1717AY.980.001343
ORF3a53L53delCTT---1717B.1.1.70.000015
ORF3a53L53FCttTtt1717B.6.10.447368
ORF3a53L53PcTtcCt1616All0.000003
ORF3a53L53delCTT---1616AY.40.000025
ORF3a53L53FCttTtt1616AY.450.001947
ORF3a53L53FCttTtt1616AY.60.000658
ORF3a53L53FCttTtt1616B.1.1.3260.028169
ORF3a53L53FCttTtt1616B.1.4270.000808
ORF3a53L53FCttTtt1616B.1.6370.001169
ORF3a53L53FCttTtt1515B.1.1.4340.005228
ORF3a53L53FCttTtt1515B.1.3510.000446
ORF3a53L53FCttTtt1414AY.230.000976
ORF3a53L53LctTctA814AY.440.000049
ORF3a53L53LctTctC614AY.440.000037
ORF3a53L53RcTtcGt1313All0.000002
ORF3a53L53del1Ctt-tt713All0.000001
ORF3a53L53del1cTtc-t313All0.000001
ORF3a53L53del1ctTct-213All0
ORF3a53L53del1CtTTt-113All0
ORF3a53L53FCttTtt1313AY.1110.002381
ORF3a53L53FCttTtt1313AY.130.002093
ORF3a53L53FCttTtt1313B.1.4560.042484
ORF3a53L53FCttTtt1313C.350.010062
ORF3a53L53FCttTtt1212B.1.2210.000852
ORF3a53L53FCttTtt1212B.1.3960.008469
ORF3a53L53FCttTtt1111A.290.058511
ORF3a53L53FCttTtt1111AY.620.004793
ORF3a53L53FCttTtt1111AY.75.10.001983
ORF3a53L53FCttTtt1111AY.9.10.000921
ORF3a53L53FCttTtt1111B.1.1.2140.00061
ORF3a53L53FCttTtt1111B.1.2180.056701
ORF3a53L53FCttTtt1111P.1.60.021401
ORF3a53L53FCttTtt1010A.170.909091
ORF3a53L53FCttTtt1010AE.80.00489
ORF3a53L53FCttTtt1010AY.3.10.000853
ORF3a53L53LctTctA1010B.1.1.1700.012469
ORF3a53L53VCttGtt1010B.1.1.70.000009
ORF3a53L53FCttTtt1010B.1.360.001459
ORF3a53L53FCttTtt1010B.1.5250.001132
ORF3a53L53LctTctC1010R.10.0009
ORF3a53L53ICttAtt99AY.4.20.000195
ORF3a53L53FCttTtt99AY.530.002588
ORF3a53L53FCttTtt99AY.98.10.000436
ORF3a53L53LctTctC99B.1.1.2140.000499
ORF3a53L53FCttTtt99B.1.258.110.003567
ORF3a53L53ICttAtt99B.1.5090.007792
ORF3a53L53ICttAtt99B.1.617.20.000034
ORF3a53L53FCttTtt99B.1.6210.000797
ORF3a53L53FCttTtt99R.10.00081
ORF3a53L53FCttTtt88AY.1010.003923
ORF3a53L53del2cTTc--88AY.40.000012
ORF3a53L53FCttTtt88AY.4.2.10.001192
ORF3a53L53ICttAtt88B.1.1.70.000007
ORF3a53L53FCttTtt88B.1.438.10.000858
ORF3a53L53FCttTtt77AY.370.002212
ORF3a53L53FCttTtt77AY.39.10.000277
ORF3a53L53FCttTtt77AY.420.000282
ORF3a53L53delCTT---77AY.430.000031
ORF3a53L53delCTT---77AY.440.000043
ORF3a53L53FCttTtt77AY.740.00081
ORF3a53L53FCttTtt77AY.840.003062
ORF3a53L53FCttTtt77B0.000895
ORF3a53L53LctTctC77B.1.10.000127
ORF3a53L53FCttTtt77B.1.1.1130.048951
ORF3a53L53FCttTtt77B.1.1.2220.001428
ORF3a53L53FCttTtt77B.1.1.280.002179
ORF3a53L53FCttTtt77B.1.1.2840.000752
ORF3a53L53FCttTtt77B.1.160.320.030043
ORF3a53L53ICttAtt77B.1.2340.000924
ORF3a53L53FCttTtt77B.1.617.10.000903
ORF3a53L53FCttTtt77D.20.000525
ORF3a53L53FCttTtt77P.1.150.001626
ORF3a53L53ICttAtt66AY.1180.000376
ORF3a53L53LctTctC56AY.30.00005
ORF3a53L53LctTctA16AY.30.00001
ORF3a53L53VCttGtt66AY.430.000027
ORF3a53L53FCttTtt66AY.710.00285
ORF3a53L53FCttTtt66AY.9.20.00022
ORF3a53L53FCttTtt66AY.920.001724
ORF3a53L53FCttTtt66AY.930.001638
ORF3a53L53VCttGtt66B.10.000055
ORF3a53L53FCttTtt66B.1.1.1890.009077
ORF3a53L53del2cTTc--66B.1.1.70.000005
ORF3a53L53FCttTtt66B.1.177.430.008863
ORF3a53L53FCttTtt66B.1.2400.001293
ORF3a53L53FCttTtt66B.1.36.290.003104
ORF3a53L53FCttTtt66B.1.4090.004687
ORF3a53L53delCTT---66B.1.617.20.000023
ORF3a53L53FCttTtt66P.60.018868
ORF3a53L53FCttTtt66Q.10.000758
ORF3a53L53FCttTtt55AY.1210.000677
ORF3a53L53FCttTtt55AY.140.00044
ORF3a53L53ICttAtt55AY.200.000194
ORF3a53L53LctTctC35AY.250.000018
ORF3a53L53LctTctA25AY.250.000012
ORF3a53L53FCttTtt55AY.300.001979
ORF3a53L53FCttTtt55AY.340.000485
ORF3a53L53FCttTtt55AY.380.002496
ORF3a53L53FCttTtt55AY.400.004822
ORF3a53L53FCttTtt55AY.540.000477
ORF3a53L53FCttTtt55AY.610.000524
ORF3a53L53LctTctC55AY.9.20.000184
ORF3a53L53LctTctA55AY.98.10.000242
ORF3a53L53FCttTtt55B.1.1.3850.022321
ORF3a53L53LctTctC45B.1.1770.000053
ORF3a53L53LctTctA15B.1.1770.000013
ORF3a53L53FCttTtt55B.1.5750.001517
ORF3a53L53FCttTtt55B.1.5960.000436
ORF3a53L53FCttTtt55B.1.5970.023148
ORF3a53L53LctTctC55P.10.000079
ORF3a53L53FCttTtt55Q.30.000725
ORF3a53L53FCttTtt44AY.1100.000451
ORF3a53L53delCTT---44AY.250.000024
ORF3a53L53VCttGtt44AY.260.000113
ORF3a53L53VCttGtt44AY.30.00004
ORF3a53L53delCTT---44AY.30.00004
ORF3a53L53VCttGtt44AY.40.000006
ORF3a53L53PcTtcCt44AY.40.000006
ORF3a53L53FCttTtt44AY.4.50.00043
ORF3a53L53VCttGtt44AY.420.000161
ORF3a53L53ICttAtt44AY.430.000018
ORF3a53L53LctTctA24AY.50.000041
ORF3a53L53LCtTTtG14AY.50.000021
ORF3a53L53LctTctC14AY.50.000021
ORF3a53L53FCttTtt44AY.5.40.001107
ORF3a53L53FCttTtt44AY.7.10.000451
ORF3a53L53FCttTtt44AY.90.00027
ORF3a53L53FCttTtt44AY.99.10.006211
ORF3a53L53FCttTtt44B.1.1110.0047
ORF3a53L53delCTT---44B.1.1770.000053
ORF3a53L53LctTctA24B.1.20.000018
ORF3a53L53LctTctG14B.1.20.000009
ORF3a53L53LctTctC14B.1.20.000009
ORF3a53L53FCttTtt44B.1.36.80.004
ORF3a53L53ICttAtt44B.1.3670.00317
ORF3a53L53FCttTtt44B.1.4280.004082
ORF3a53L53FCttTtt44B.1.5580.018265
ORF3a53L53FCttTtt44B.1.6090.001918
ORF3a53L53FCttTtt44P.1.140.000191
ORF3a53L53FCttTtt330.166667
ORF3a53L53FCttTtt33A.50.005769
ORF3a53L53ICttAtt33AY.1030.000019
ORF3a53L53del2cTTc--33AY.1130.000427
ORF3a53L53FCttTtt33AY.190.003421
ORF3a53L53FCttTtt33AY.240.001293
ORF3a53L53RcTtcGt33AY.290.000047
ORF3a53L53del1cTtc-t23AY.40.000003
ORF3a53L53del1Ctt-tt13AY.40.000002
ORF3a53L53delCTT---33AY.4.50.000322
ORF3a53L53FCttTtt33AY.410.000882
ORF3a53L53VCttGtt33AY.440.000018
ORF3a53L53VCttGtt33AY.450.000365
ORF3a53L53FCttTtt33AY.46.50.000595
ORF3a53L53FCttTtt33AY.5.30.001012
ORF3a53L53FCttTtt33AY.500.002398
ORF3a53L53delCTT---33AY.580.002722
ORF3a53L53FCttTtt33AY.850.001282
ORF3a53L53FCttTtt33AY.860.00249
ORF3a53L53FCttTtt33AY.900.002053
ORF3a53L53delCTT---33B.1.10.000054
ORF3a53L53FCttTtt33B.1.1.2160.002671
ORF3a53L53FCttTtt33B.1.1.250.001706
ORF3a53L53FCttTtt33B.1.1.2750.033708
ORF3a53L53FCttTtt33B.1.1.2770.002276
ORF3a53L53FCttTtt33B.1.1.3480.002389
ORF3a53L53LctTctC33B.1.177.170.002463
ORF3a53L53FCttTtt33B.1.177.70.000495
ORF3a53L53LctTctC33B.1.177.810.000568
ORF3a53L53VCttGtt33B.1.20.000026
ORF3a53L53FCttTtt33B.1.2320.001612
ORF3a53L53LctTctC33B.1.258.110.001189
ORF3a53L53FCttTtt33B.1.3140.022556
ORF3a53L53FCttTtt33B.1.36.10.003421
ORF3a53L53FCttTtt33B.1.466.20.001174
ORF3a53L53FCttTtt33B.1.5240.004219
ORF3a53L53FCttTtt33B.1.6280.001057
ORF3a53L53FCttTtt33P.1.170.000485
ORF3a53L53FCttTtt33P.40.011407
ORF3a53L53CCTtTGt220.111111
ORF3a53L53RcTtcGt220.111111
ORF3a53L53del1Ctt-tt220.111111
ORF3a53L53FCttTtt22A.10.000564
ORF3a53L53SCTtTCt22All0
ORF3a53L53CCTtTGt22All0
ORF3a53L53LctTctC12AY.1000.000046
ORF3a53L53LctTctA12AY.1000.000046
ORF3a53L53ICttAtt22AY.1020.000053
ORF3a53L53del2cTTc--22AY.1030.000012
ORF3a53L53LctTctA22AY.1170.000169
ORF3a53L53del2cTTc--22AY.1200.000074
ORF3a53L53FCttTtt22AY.120.10.000642
ORF3a53L53del2cTTc--22AY.140.000176
ORF3a53L53FCttTtt22AY.160.000759
ORF3a53L53SCTtTCt22AY.250.000012
ORF3a53L53del2cTTc--22AY.260.000057
ORF3a53L53LctTctA22AY.350.000466
ORF3a53L53delCTT---22AY.390.000049
ORF3a53L53ICttAtt22AY.4.40.000818
ORF3a53L53LctTctA22AY.460.000208
ORF3a53L53FCttTtt22AY.46.10.002053
ORF3a53L53del2cTTc--22AY.50.000041
ORF3a53L53delCTT---22AY.50.000041
ORF3a53L53FCttTtt22AY.510.001818
ORF3a53L53FCttTtt22AY.660.002139
ORF3a53L53FCttTtt22AY.670.000929
ORF3a53L53FCttTtt22AY.680.000547
ORF3a53L53FCttTtt22AY.70.000392
ORF3a53L53VCttGtt22AY.710.00095
ORF3a53L53ICttAtt22AY.75.10.000361
ORF3a53L53FCttTtt22AY.780.003082
ORF3a53L53delCTT---22AY.810.003984
ORF3a53L53FCttTtt22AY.820.002714
ORF3a53L53FCttTtt22AY.910.001461
ORF3a53L53delCTT---22B0.000256
ORF3a53L53ICttAtt22B.10.000018
ORF3a53L53del2cTTc--22B.10.000018
ORF3a53L53PcTtcCt22B.10.000018
ORF3a53L53del1CtTTt-12B.10.000009
ORF3a53L53del1Ctt-tt12B.10.000009
ORF3a53L53FCttTtt22B.1.1.10.000653
ORF3a53L53FCttTtt22B.1.1.1200.066667
ORF3a53L53FCttTtt22B.1.1.1590.009346
ORF3a53L53FCttTtt22B.1.1.1630.015267
ORF3a53L53FCttTtt22B.1.1.2820.023256
ORF3a53L53FCttTtt22B.1.1.3060.000877
ORF3a53L53FCttTtt22B.1.1.3170.000823
ORF3a53L53FCttTtt22B.1.1.3180.000604
ORF3a53L53FCttTtt22B.1.1.330.000842
ORF3a53L53FCttTtt22B.1.1.3690.000892
ORF3a53L53FCttTtt22B.1.1.3720.001377
ORF3a53L53FCttTtt22B.1.1.4480.004065
ORF3a53L53FCttTtt22B.1.1.5170.013605
ORF3a53L53FCttTtt22B.1.1.5260.007092
ORF3a53L53FCttTtt22B.1.1.700.000682
ORF3a53L53PcTtcCt22B.1.1770.000026
ORF3a53L53FCttTtt22B.1.177.160.001329
ORF3a53L53FCttTtt22B.1.177.440.001038
ORF3a53L53FCttTtt22B.1.177.560.001335
ORF3a53L53FCttTtt22B.1.177.860.000367
ORF3a53L53FCttTtt22B.1.177.870.001456
ORF3a53L53FCttTtt22B.1.2340.000264
ORF3a53L53FCttTtt22B.1.2370.00995
ORF3a53L53delCTT---22B.1.2410.001623
ORF3a53L53ICttAtt22B.1.3490.00143
ORF3a53L53FCttTtt22B.1.3620.003082
ORF3a53L53FCttTtt22B.1.3690.00057
ORF3a53L53FCttTtt22B.1.4160.002538
ORF3a53L53FCttTtt22B.1.5110.068966
ORF3a53L53FCttTtt22B.1.5170.000854
ORF3a53L53FCttTtt22B.1.5270.007407
ORF3a53L53FCttTtt22B.1.5680.002222
ORF3a53L53FCttTtt22B.1.5950.000522
ORF3a53L53LctTctG22B.1.6060.012048
ORF3a53L53VCttGtt22B.1.617.20.000008
ORF3a53L53VCttGtt22B.1.6200.001892
ORF3a53L53FCttTtt22B.400.000729
ORF3a53L53FCttTtt22B.60.00182
ORF3a53L53FCttTtt22C.20.032258
ORF3a53L53FCttTtt22C.36.30.001134
ORF3a53L53delCTT---22D.20.00015
ORF3a53L53FCttTtt22P.1.70.000639
ORF3a53L53FCttTtt22P.20.000373
ORF3a53L53FCttTtt22P.30.00319
ORF3a53L53delCTT---22U.30.007722
ORF3a53L53FCttTtt11A.20.000662
ORF3a53L53ICttAtt11A.23.10.000704
ORF3a53L53FCttTtt11A.23.10.000704
ORF3a53L53LctTctC11AE.80.000489
ORF3a53L53delCTT---11AH.30.003802
ORF3a53L53ACTtGCt11All0
ORF3a53L53FCttTtt11AT.10.005128
ORF3a53L53FCttTtt11AU.10.001266
ORF3a53L53VCttGtt11AY.1030.000006
ORF3a53L53delCTT---11AY.1030.000006
ORF3a53L53FCttTtt11AY.1050.000643
ORF3a53L53FCttTtt11AY.1090.00074
ORF3a53L53delCTT---11AY.1110.000183
ORF3a53L53FCttTtt11AY.1140.000231
ORF3a53L53FCttTtt11AY.1160.000287
ORF3a53L53delCTT---11AY.1170.000085
ORF3a53L53LctTctA11AY.1190.000035
ORF3a53L53VCttGtt11AY.120.000316
ORF3a53L53delCTT---11AY.1200.000037
ORF3a53L53RcTtcGt11AY.120.10.000321
ORF3a53L53FCttTtt11AY.120.2.10.000498
ORF3a53L53LctTctA11AY.1210.000135
ORF3a53L53VCttGtt11AY.130.000161
ORF3a53L53delCTT---11AY.140.000088
ORF3a53L53LctTctC11AY.16.10.00047
ORF3a53L53FCttTtt11AY.220.002092
ORF3a53L53delCTT---11AY.230.00007
ORF3a53L53LctTctA11AY.230.00007
ORF3a53L53VCttGtt11AY.230.00007
ORF3a53L53FCttTtt11AY.23.10.000417
ORF3a53L53RcTtcGt11AY.250.000006
ORF3a53L53del2cTTc--11AY.250.000006
ORF3a53L53ICttAtt11AY.250.000006
ORF3a53L53PcTtcCt11AY.250.000006
ORF3a53L53LctTctC11AY.290.000016
ORF3a53L53delCTT---11AY.29.10.000221
ORF3a53L53FCttTtt11AY.29.10.000221
ORF3a53L53ICttAtt11AY.30.00001
ORF3a53L53PcTtcCt11AY.30.00001
ORF3a53L53delCTT---11AY.300.000396
ORF3a53L53FCttTtt11AY.320.000532
ORF3a53L53del2cTTc--11AY.340.000097
ORF3a53L53del2cTTc--11AY.350.000233
ORF3a53L53FCttTtt11AY.350.000233
ORF3a53L53del2cTTc--11AY.390.000025
ORF3a53L53delCTT---11AY.39.10.00004
ORF3a53L53PcTtcCt11AY.39.10.00004
ORF3a53L53FCttTtt11AY.39.1.10.000725
ORF3a53L53RcTtcGt11AY.40.000002
ORF3a53L53PcTtcCt11AY.4.20.000022
ORF3a53L53delCTT---11AY.4.20.000022
ORF3a53L53del2cTTc--11AY.4.20.000022
ORF3a53L53FCttTtt11AY.4.30.000842
ORF3a53L53del1Ctt-tt11AY.4.50.000107
ORF3a53L53PcTtcCt11AY.410.000294
ORF3a53L53LctTctC11AY.410.000294
ORF3a53L53ICttAtt11AY.440.000006
ORF3a53L53del2cTTc--11AY.440.000006
ORF3a53L53HcTtcAt11AY.440.000006
ORF3a53L53LctTctA11AY.450.000122
ORF3a53L53del1Ctt-tt11AY.46.20.000635
ORF3a53L53LctTctA11AY.46.20.000635
ORF3a53L53delCTT---11AY.46.20.000635
ORF3a53L53FCttTtt11AY.46.30.000934
ORF3a53L53LCtTTtG11AY.46.40.000165
ORF3a53L53FCttTtt11AY.46.40.000165
ORF3a53L53del2cTTc--11AY.5.40.000277
ORF3a53L53del2cTTc--11AY.540.000095
ORF3a53L53FCttTtt11AY.560.001605
ORF3a53L53LctTctC11AY.570.000656
ORF3a53L53LctTctA11AY.580.000907
ORF3a53L53FCttTtt11AY.590.00053
ORF3a53L53LctTctA11AY.610.000105
ORF3a53L53del1Ctt-tt11AY.640.000595
ORF3a53L53FCttTtt11AY.720.001361
ORF3a53L53FCttTtt11AY.730.000665
ORF3a53L53LctTctA11AY.740.000116
ORF3a53L53ICttAtt11AY.750.000056
ORF3a53L53del2cTTc--11AY.750.000056
ORF3a53L53FCttTtt11AY.800.001129
ORF3a53L53FCttTtt11AY.870.000833
ORF3a53L53FCttTtt11AY.880.000884
ORF3a53L53delCTT---11AY.90.000068
ORF3a53L53del2cTTc--11AY.90.000068
ORF3a53L53ICttAtt11AY.90.000068
ORF3a53L53del2cTTc--11AY.9.20.000037
ORF3a53L53delCTT---11AY.9.20.000037
ORF3a53L53ICttAtt11AY.920.000287
ORF3a53L53LctTctA11AY.960.002075
ORF3a53L53FCttTtt11AY.960.002075
ORF3a53L53LctTctA11AY.980.000079
ORF3a53L53delCTT---11AY.98.10.000048
ORF3a53L53PcTtcCt11AY.98.10.000048
ORF3a53L53ICttAtt11AY.98.10.000048
ORF3a53L53delCTT---11AY.990.001049
ORF3a53L53delCTT---11AY.99.20.000092
ORF3a53L53FCttTtt11AZ.60.008403
ORF3a53L53HcTtcAt11B0.000128
ORF3a53L53delCTT---11B.10.000009
ORF3a53L53ICttAtt11B.1.10.000018
ORF3a53L53FCttTtt11B.1.1.1290.009174
ORF3a53L53delCTT---11B.1.1.1390.022727
ORF3a53L53FCttTtt11B.1.1.1410.002012
ORF3a53L53FCttTtt11B.1.1.1740.003378
ORF3a53L53FCttTtt11B.1.1.1760.000439
ORF3a53L53FCttTtt11B.1.1.1780.041667
ORF3a53L53RcTtcGt11B.1.1.1940.00495
ORF3a53L53FCttTtt11B.1.1.2190.005
ORF3a53L53FCttTtt11B.1.1.2280.003049
ORF3a53L53FCttTtt11B.1.1.2540.011236
ORF3a53L53FCttTtt11B.1.1.2910.000742
ORF3a53L53FCttTtt11B.1.1.3010.001179
ORF3a53L53FCttTtt11B.1.1.3110.000358
ORF3a53L53ICttAtt11B.1.1.3160.000925
ORF3a53L53FCttTtt11B.1.1.340.013158
ORF3a53L53FCttTtt11B.1.1.370.000193
ORF3a53L53delCTT---11B.1.1.370.000193
ORF3a53L53LctTctC11B.1.1.370.000193
ORF3a53L53FCttTtt11B.1.1.3760.005952
ORF3a53L53delCTT---11B.1.1.4090.002833
ORF3a53L53FCttTtt11B.1.1.4090.002833
ORF3a53L53FCttTtt11B.1.1.4130.006897
ORF3a53L53FCttTtt11B.1.1.4670.019231
ORF3a53L53FCttTtt11B.1.1.480.002874
ORF3a53L53delCTT---11B.1.1.500.000679
ORF3a53L53RcTtcGt11B.1.1.5140.038462
ORF3a53L53FCttTtt11B.1.1.5180.006329
ORF3a53L53LctTctA11B.1.1.5190.00004
ORF3a53L53del2cTTc--11B.1.1.5190.00004
ORF3a53L53FCttTtt11B.1.1.5230.001563
ORF3a53L53ACTtGCt11B.1.1.70.000001
ORF3a53L53RcTtcGt11B.1.1.70.000001
ORF3a53L53HcTtcAt11B.1.1.700.000341
ORF3a53L53LctTctA11B.1.1.830.00271
ORF3a53L53FCttTtt11B.1.1040.00369
ORF3a53L53FCttTtt11B.1.1280.000635
ORF3a53L53FCttTtt11B.1.1390.000733
ORF3a53L53FCttTtt11B.1.1570.002985
ORF3a53L53del2cTTc--11B.1.160.140.002119
ORF3a53L53delCTT---11B.1.160.330.004425
ORF3a53L53ICttAtt11B.1.1770.000013
ORF3a53L53del2cTTc--11B.1.1770.000013
ORF3a53L53FCttTtt11B.1.177.120.000152
ORF3a53L53FCttTtt11B.1.177.150.000631
ORF3a53L53FCttTtt11B.1.177.210.000076
ORF3a53L53FCttTtt11B.1.177.420.000894
ORF3a53L53FCttTtt11B.1.177.520.001757
ORF3a53L53FCttTtt11B.1.177.530.002392
ORF3a53L53FCttTtt11B.1.177.580.001332
ORF3a53L53delCTT---11B.1.177.60.000977
ORF3a53L53FCttTtt11B.1.177.600.000218
ORF3a53L53FCttTtt11B.1.177.620.001192
ORF3a53L53FCttTtt11B.1.177.630.002703
ORF3a53L53FCttTtt11B.1.177.650.000665
ORF3a53L53FCttTtt11B.1.177.690.001484
ORF3a53L53LctTctC11B.1.177.730.000566
ORF3a53L53FCttTtt11B.1.177.730.000566
ORF3a53L53FCttTtt11B.1.177.810.000189
ORF3a53L53ICttAtt11B.1.20.000009
ORF3a53L53FCttTtt11B.1.2100.002132
ORF3a53L53FCttTtt11B.1.2140.003663
ORF3a53L53PcTtcCt11B.1.2210.000071
ORF3a53L53delCTT---11B.1.221.10.002907
ORF3a53L53LctTctG11B.1.2340.000132
ORF3a53L53FCttTtt11B.1.2360.002053
ORF3a53L53ICttAtt11B.1.2430.00007
ORF3a53L53LctTctC11B.1.2430.00007
ORF3a53L53FCttTtt11B.1.2520.006623
ORF3a53L53delCTT---11B.1.258.150.018868
ORF3a53L53FCttTtt11B.1.258.170.000104
ORF3a53L53LctTctC11B.1.258.70.001912
ORF3a53L53FCttTtt11B.1.2910.019231
ORF3a53L53FCttTtt11B.1.30.002618
ORF3a53L53FCttTtt11B.1.3200.001245
ORF3a53L53FCttTtt11B.1.3240.001605
ORF3a53L53FCttTtt11B.1.3460.001311
ORF3a53L53FCttTtt11B.1.351.30.000876
ORF3a53L53LctTctC11B.1.360.000146
ORF3a53L53FCttTtt11B.1.36.100.004785
ORF3a53L53FCttTtt11B.1.36.170.000494
ORF3a53L53FCttTtt11B.1.36.380.001642
ORF3a53L53FCttTtt11B.1.3610.001289
ORF3a53L53FCttTtt11B.1.3980.002976
ORF3a53L53del2cTTc--11B.1.4000.000429
ORF3a53L53FCttTtt11B.1.4030.003268
ORF3a53L53FCttTtt11B.1.4080.00369
ORF3a53L53FCttTtt11B.1.4110.003704
ORF3a53L53delCTT---11B.1.4220.000812
ORF3a53L53LctTctC11B.1.4270.00005
ORF3a53L53VCttGtt11B.1.4290.000024
ORF3a53L53HcTtcAt11B.1.4430.004673
ORF3a53L53FCttTtt11B.1.4620.007246
ORF3a53L53ICttAtt11B.1.466.20.000391
ORF3a53L53FCttTtt11B.1.4690.00361
ORF3a53L53RcTtcGt11B.1.5090.000866
ORF3a53L53ICttAtt11B.1.5260.000024
ORF3a53L53FCttTtt11B.1.5380.008065
ORF3a53L53FCttTtt11B.1.5390.017544
ORF3a53L53FCttTtt11B.1.5610.000397
ORF3a53L53FCttTtt11B.1.5770.000687
ORF3a53L53ICttAtt11B.1.5810.009434
ORF3a53L53FCttTtt11B.1.5820.000491
ORF3a53L53FCttTtt11B.1.5940.03125
ORF3a53L53del1cTtc-t11B.1.5960.000087
ORF3a53L53FCttTtt11B.1.6000.005848
ORF3a53L53FCttTtt11B.1.6120.002653
ORF3a53L53LctTctC11B.1.617.10.000129
ORF3a53L53del1ctTct-11B.1.617.20.000004
ORF3a53L53PcTtcCt11B.1.617.20.000004
ORF3a53L53del2cTTc--11B.1.617.20.000004
ORF3a53L53FCttTtt11B.1.6200.000946
ORF3a53L53LctTctA11B.1.6210.000089
ORF3a53L53FCttTtt11B.1.621.10.000506
ORF3a53L53FCttTtt11B.1.6230.000536
ORF3a53L53FCttTtt11B.1.6250.002353
ORF3a53L53FCttTtt11B.1.6310.003367
ORF3a53L53delCTT---11B.1.6380.052632
ORF3a53L53FCttTtt11B.1.90.006173
ORF3a53L53FCttTtt11B.1.9.50.005682
ORF3a53L53ICttAtt11B.60.00091
ORF3a53L53FCttTtt11B.6.80.008264
ORF3a53L53LctTctC11C.1.20.004255
ORF3a53L53FCttTtt11C.130.025641
ORF3a53L53FCttTtt11C.140.004329
ORF3a53L53FCttTtt11C.220.071429
ORF3a53L53ICttAtt11C.80.004464
ORF3a53L53FCttTtt11L.30.003546
ORF3a53L53FCttTtt11N.90.005952
ORF3a53L53delCTT---11P.10.000016
ORF3a53L53del2cTTc--11P.10.000016
ORF3a53L53ICttAtt11P.10.000016
ORF3a53L53FCttTtt11P.1.100.000269
ORF3a53L53RcTtcGt11P.1.100.000269
ORF3a53L53FCttTtt11P.1.120.000484
ORF3a53L53delCTT---11P.1.150.000232
ORF3a53L53LctTctC11P.20.000187
ORF3a53L53ICttAtt11P.20.000187
ORF3a53L53del1ctTct-11Q.40.000455
ORF3a53L53LctTctC11Q.70.001111
ORF3a53L53FCttTtt11Q.80.000165
ORF3a53L53LctTctG11U.30.003861
ORF3a53L53FCttTtt11W.10.008696