CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 52 | L52F | nonsyn | Ctt | Ttt | 6170 | 6170 | 1 | 25546-25548 | |
ORF3a | 52 | L52L | syn | ctT | ctG | 616 | 295 | 0.478896 | 25546-25548 | |
ORF3a | 52 | L52L | syn | ctT | ctC | 616 | 255 | 0.413961 | 25546-25548 | |
ORF3a | 52 | L52L | syn | ctT | ctA | 616 | 66 | 0.107143 | 25546-25548 | |
ORF3a | 52 | L52I | nonsyn | Ctt | Att | 279 | 277 | 0.992832 | 25546-25548 | |
ORF3a | 52 | L52I | nonsyn | CtT | AtC | 279 | 2 | 0.00716846 | 25546-25548 | |
ORF3a | 52 | L52P | nonsyn | cTt | cCt | 163 | 160 | 0.981595 | 25546-25548 | |
ORF3a | 52 | L52P | nonsyn | cTT | cCA | 163 | 3 | 0.0184049 | 25546-25548 | |
ORF3a | 52 | L52del | del | CTT | --- | 129 | 129 | 1 | 25546-25548 | |
ORF3a | 52 | L52del1 | del | cTt | c-t | 83 | 83 | 1 | 25546-25548 | |
ORF3a | 52 | L52V | nonsyn | Ctt | Gtt | 44 | 44 | 1 | 25546-25548 | |
ORF3a | 52 | L52H | nonsyn | cTt | cAt | 32 | 28 | 0.875 | 25546-25548 | |
ORF3a | 52 | L52H | nonsyn | cTT | cAC | 32 | 4 | 0.125 | 25546-25548 | |
ORF3a | 52 | L52del2 | del | cTT | c-- | 13 | 11 | 0.846154 | 25546-25548 | |
ORF3a | 52 | L52del2 | del | CTT | --N | 13 | 1 | 0.0769231 | 25546-25548 | |
ORF3a | 52 | L52del2 | del | CTt | --t | 13 | 1 | 0.0769231 | 25546-25548 | |
ORF3a | 52 | L52R | nonsyn | cTt | cGt | 4 | 4 | 1 | 25546-25548 | |
ORF3a | 52 | L52N | nonsyn | CTt | AAt | 4 | 2 | 0.5 | 25546-25548 | |
ORF3a | 52 | L52N | nonsyn | CTT | AAC | 4 | 2 | 0.5 | 25546-25548 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 52 | L52F | Ctt | Ttt | 6170 | 6170 | All | 0.00118 |
ORF3a | 52 | L52F | Ctt | Ttt | 1498 | 1498 | B.1.351 | 0.04453 |
ORF3a | 52 | L52F | Ctt | Ttt | 1041 | 1041 | AY.4 | 0.00162 |
ORF3a | 52 | L52F | Ctt | Ttt | 813 | 813 | B.1.1.7 | 0.000728 |
ORF3a | 52 | L52L | ctT | ctG | 295 | 616 | All | 0.000056 |
ORF3a | 52 | L52L | ctT | ctC | 255 | 616 | All | 0.000049 |
ORF3a | 52 | L52L | ctT | ctA | 66 | 616 | All | 0.000013 |
ORF3a | 52 | L52F | Ctt | Ttt | 412 | 412 | AY.33 | 0.027513 |
ORF3a | 52 | L52I | Ctt | Att | 277 | 279 | All | 0.000053 |
ORF3a | 52 | L52I | CtT | AtC | 2 | 279 | All | 0 |
ORF3a | 52 | L52L | ctT | ctG | 269 | 270 | B.1.2 | 0.002369 |
ORF3a | 52 | L52L | ctT | ctA | 1 | 270 | B.1.2 | 0.000009 |
ORF3a | 52 | L52F | Ctt | Ttt | 212 | 212 | B.1.362.2 | 1 |
ORF3a | 52 | L52P | cTt | cCt | 160 | 163 | All | 0.000031 |
ORF3a | 52 | L52P | cTT | cCA | 3 | 163 | All | 0.000001 |
ORF3a | 52 | L52F | Ctt | Ttt | 151 | 151 | AY.39 | 0.003731 |
ORF3a | 52 | L52F | Ctt | Ttt | 146 | 146 | B.1.617.2 | 0.00055 |
ORF3a | 52 | L52del | CTT | --- | 129 | 129 | All | 0.000025 |
ORF3a | 52 | L52F | Ctt | Ttt | 125 | 125 | AY.43 | 0.000554 |
ORF3a | 52 | L52F | Ctt | Ttt | 103 | 103 | AY.103 | 0.00064 |
ORF3a | 52 | L52del1 | cTt | c-t | 83 | 83 | All | 0.000016 |
ORF3a | 52 | L52F | Ctt | Ttt | 82 | 82 | AY.44 | 0.000499 |
ORF3a | 52 | L52F | Ctt | Ttt | 80 | 80 | B.1.2 | 0.000704 |
ORF3a | 52 | L52F | Ctt | Ttt | 77 | 77 | AY.85 | 0.032892 |
ORF3a | 52 | L52L | ctT | ctC | 65 | 72 | B.1.1.7 | 0.000058 |
ORF3a | 52 | L52L | ctT | ctG | 5 | 72 | B.1.1.7 | 0.000004 |
ORF3a | 52 | L52L | ctT | ctA | 2 | 72 | B.1.1.7 | 0.000002 |
ORF3a | 52 | L52F | Ctt | Ttt | 71 | 71 | B.1.177 | 0.000935 |
ORF3a | 52 | L52F | Ctt | Ttt | 69 | 69 | B.1 | 0.000632 |
ORF3a | 52 | L52del1 | cTt | c-t | 67 | 67 | B.1.1.7 | 0.00006 |
ORF3a | 52 | L52F | Ctt | Ttt | 66 | 66 | B.1.429 | 0.001553 |
ORF3a | 52 | L52F | Ctt | Ttt | 59 | 59 | AY.25 | 0.000355 |
ORF3a | 52 | L52L | ctT | ctA | 55 | 58 | AY.4.2 | 0.001193 |
ORF3a | 52 | L52L | ctT | ctC | 3 | 58 | AY.4.2 | 0.000065 |
ORF3a | 52 | L52I | Ctt | Att | 48 | 48 | B.1.1 | 0.000871 |
ORF3a | 52 | L52I | Ctt | Att | 46 | 46 | B.1.1.7 | 0.000041 |
ORF3a | 52 | L52F | Ctt | Ttt | 45 | 45 | B.1.427 | 0.002272 |
ORF3a | 52 | L52V | Ctt | Gtt | 44 | 44 | All | 0.000008 |
ORF3a | 52 | L52F | Ctt | Ttt | 41 | 41 | AY.6 | 0.001686 |
ORF3a | 52 | L52I | Ctt | Att | 41 | 41 | B.1.1.434 | 0.014291 |
ORF3a | 52 | L52P | cTt | cCt | 41 | 41 | B.1.177.4 | 0.008653 |
ORF3a | 52 | L52F | Ctt | Ttt | 41 | 41 | B.1.478 | 0.482353 |
ORF3a | 52 | L52F | Ctt | Ttt | 38 | 38 | B.1.590 | 0.172727 |
ORF3a | 52 | L52F | Ctt | Ttt | 37 | 37 | B.1.1 | 0.000671 |
ORF3a | 52 | L52F | Ctt | Ttt | 36 | 36 | AY.119 | 0.001271 |
ORF3a | 52 | L52P | cTt | cCt | 35 | 35 | AY.94 | 0.015494 |
ORF3a | 52 | L52F | Ctt | Ttt | 34 | 34 | AY.102 | 0.000901 |
ORF3a | 52 | L52H | cTt | cAt | 28 | 32 | All | 0.000005 |
ORF3a | 52 | L52H | cTT | cAC | 4 | 32 | All | 0.000001 |
ORF3a | 52 | L52L | ctT | ctC | 32 | 32 | B.1.438.1 | 0.003432 |
ORF3a | 52 | L52F | Ctt | Ttt | 32 | 32 | B.1.526 | 0.000752 |
ORF3a | 52 | L52F | Ctt | Ttt | 29 | 29 | AY.71 | 0.013777 |
ORF3a | 52 | L52F | Ctt | Ttt | 27 | 27 | AY.3 | 0.000269 |
ORF3a | 52 | L52F | Ctt | Ttt | 23 | 23 | AY.100 | 0.001058 |
ORF3a | 52 | L52F | Ctt | Ttt | 23 | 23 | AY.99.2 | 0.00212 |
ORF3a | 52 | L52F | Ctt | Ttt | 23 | 23 | P.1 | 0.000362 |
ORF3a | 52 | L52F | Ctt | Ttt | 22 | 22 | AY.39.1 | 0.000871 |
ORF3a | 52 | L52F | Ctt | Ttt | 21 | 21 | B.1.564.1 | 0.033123 |
ORF3a | 52 | L52del | CTT | --- | 20 | 20 | AY.4 | 0.000031 |
ORF3a | 52 | L52L | ctT | ctC | 20 | 20 | AY.47 | 0.000622 |
ORF3a | 52 | L52F | Ctt | Ttt | 19 | 19 | B.1.1.216 | 0.016919 |
ORF3a | 52 | L52F | Ctt | Ttt | 19 | 19 | B.6.6 | 0.016889 |
ORF3a | 52 | L52F | Ctt | Ttt | 18 | 18 | B.1.1.519 | 0.000715 |
ORF3a | 52 | L52F | Ctt | Ttt | 18 | 18 | B.1.416.1 | 0.028125 |
ORF3a | 52 | L52L | ctT | ctC | 16 | 17 | AY.25 | 0.000096 |
ORF3a | 52 | L52L | ctT | ctG | 1 | 17 | AY.25 | 0.000006 |
ORF3a | 52 | L52I | Ctt | Att | 17 | 17 | AY.43 | 0.000075 |
ORF3a | 52 | L52P | cTt | cCt | 17 | 17 | B.1.258 | 0.001131 |
ORF3a | 52 | L52H | cTt | cAt | 17 | 17 | B.1.572 | 0.425 |
ORF3a | 52 | L52F | Ctt | Ttt | 16 | 16 | AY.42 | 0.000644 |
ORF3a | 52 | L52F | Ctt | Ttt | 15 | 15 | A.2.5.2 | 0.023585 |
ORF3a | 52 | L52del | CTT | --- | 15 | 15 | B.1.1.7 | 0.000013 |
ORF3a | 52 | L52I | Ctt | Att | 14 | 14 | AY.103 | 0.000087 |
ORF3a | 52 | L52F | Ctt | Ttt | 14 | 14 | AY.5 | 0.000289 |
ORF3a | 52 | L52F | Ctt | Ttt | 14 | 14 | B.1.621 | 0.001239 |
ORF3a | 52 | L52F | Ctt | Ttt | 14 | 14 | P.1.17 | 0.002265 |
ORF3a | 52 | L52del2 | cTT | c-- | 11 | 13 | All | 0.000002 |
ORF3a | 52 | L52del2 | CTT | --N | 1 | 13 | All | 0 |
ORF3a | 52 | L52del2 | CTt | --t | 1 | 13 | All | 0 |
ORF3a | 52 | L52L | ctT | ctG | 6 | 13 | B.1 | 0.000055 |
ORF3a | 52 | L52L | ctT | ctC | 5 | 13 | B.1 | 0.000046 |
ORF3a | 52 | L52L | ctT | ctA | 2 | 13 | B.1 | 0.000018 |
ORF3a | 52 | L52V | Ctt | Gtt | 13 | 13 | B.1.1.7 | 0.000012 |
ORF3a | 52 | L52F | Ctt | Ttt | 13 | 13 | B.1.160 | 0.000405 |
ORF3a | 52 | L52F | Ctt | Ttt | 13 | 13 | B.1.634 | 0.044521 |
ORF3a | 52 | L52F | Ctt | Ttt | 12 | 12 | AY.29 | 0.000189 |
ORF3a | 52 | L52I | Ctt | Att | 12 | 12 | B.1 | 0.00011 |
ORF3a | 52 | L52L | ctT | ctC | 12 | 12 | B.1.324 | 0.019262 |
ORF3a | 52 | L52F | Ctt | Ttt | 12 | 12 | B.1.377 | 0.054795 |
ORF3a | 52 | L52L | ctT | ctC | 7 | 12 | B.1.617.2 | 0.000026 |
ORF3a | 52 | L52L | ctT | ctG | 3 | 12 | B.1.617.2 | 0.000011 |
ORF3a | 52 | L52L | ctT | ctA | 2 | 12 | B.1.617.2 | 0.000008 |
ORF3a | 52 | L52F | Ctt | Ttt | 11 | 11 | AY.16 | 0.004176 |
ORF3a | 52 | L52I | Ctt | Att | 11 | 11 | AY.25 | 0.000066 |
ORF3a | 52 | L52F | Ctt | Ttt | 11 | 11 | AY.9.2 | 0.000404 |
ORF3a | 52 | L52L | ctT | ctC | 10 | 11 | B.1.177.33 | 0.016447 |
ORF3a | 52 | L52L | ctT | ctA | 1 | 11 | B.1.177.33 | 0.001645 |
ORF3a | 52 | L52F | Ctt | Ttt | 10 | 10 | AY.24 | 0.00431 |
ORF3a | 52 | L52del | CTT | --- | 10 | 10 | AY.3 | 0.000099 |
ORF3a | 52 | L52F | Ctt | Ttt | 10 | 10 | P.1.15 | 0.002323 |
ORF3a | 52 | L52F | Ctt | Ttt | 8 | 8 | AD.2 | 0.001752 |
ORF3a | 52 | L52L | ctT | ctC | 8 | 8 | AY.4 | 0.000012 |
ORF3a | 52 | L52I | Ctt | Att | 8 | 8 | AY.4 | 0.000012 |
ORF3a | 52 | L52del | CTT | --- | 8 | 8 | AY.43 | 0.000035 |
ORF3a | 52 | L52del | CTT | --- | 8 | 8 | AY.44 | 0.000049 |
ORF3a | 52 | L52F | Ctt | Ttt | 8 | 8 | AY.47 | 0.000249 |
ORF3a | 52 | L52F | Ctt | Ttt | 8 | 8 | AY.54 | 0.000763 |
ORF3a | 52 | L52F | Ctt | Ttt | 8 | 8 | B.1.499 | 0.008403 |
ORF3a | 52 | L52F | Ctt | Ttt | 8 | 8 | B.1.617.1 | 0.001032 |
ORF3a | 52 | L52I | Ctt | Att | 8 | 8 | B.1.617.2 | 0.00003 |
ORF3a | 52 | L52P | cTt | cCt | 7 | 7 | AY.4 | 0.000011 |
ORF3a | 52 | L52F | Ctt | Ttt | 7 | 7 | AY.4.5 | 0.000752 |
ORF3a | 52 | L52P | cTt | cCt | 7 | 7 | B.1.1.7 | 0.000006 |
ORF3a | 52 | L52F | Ctt | Ttt | 7 | 7 | B.1.258 | 0.000466 |
ORF3a | 52 | L52F | Ctt | Ttt | 7 | 7 | B.1.258.24 | 0.075269 |
ORF3a | 52 | L52F | Ctt | Ttt | 7 | 7 | B.1.524 | 0.009845 |
ORF3a | 52 | L52F | Ctt | Ttt | 7 | 7 | B.40 | 0.00255 |
ORF3a | 52 | L52I | Ctt | Att | 7 | 7 | B.6 | 0.006369 |
ORF3a | 52 | L52L | ctT | ctC | 2 | 6 | 0.111111 | |
ORF3a | 52 | L52L | ctT | ctA | 2 | 6 | 0.111111 | |
ORF3a | 52 | L52L | ctT | ctG | 2 | 6 | 0.111111 | |
ORF3a | 52 | L52I | Ctt | Att | 6 | 6 | AY.119 | 0.000212 |
ORF3a | 52 | L52F | Ctt | Ttt | 6 | 6 | AY.120 | 0.000223 |
ORF3a | 52 | L52F | Ctt | Ttt | 6 | 6 | AY.26 | 0.00017 |
ORF3a | 52 | L52L | ctT | ctC | 6 | 6 | AY.42 | 0.000241 |
ORF3a | 52 | L52I | Ctt | Att | 6 | 6 | AY.44 | 0.000037 |
ORF3a | 52 | L52F | Ctt | Ttt | 6 | 6 | AY.98 | 0.000474 |
ORF3a | 52 | L52F | Ctt | Ttt | 6 | 6 | AY.99 | 0.006296 |
ORF3a | 52 | L52P | cTt | cCt | 6 | 6 | B.1 | 0.000055 |
ORF3a | 52 | L52F | Ctt | Ttt | 6 | 6 | B.1.110.3 | 0.00431 |
ORF3a | 52 | L52F | Ctt | Ttt | 6 | 6 | B.1.111 | 0.007051 |
ORF3a | 52 | L52F | Ctt | Ttt | 6 | 6 | B.1.36.29 | 0.003104 |
ORF3a | 52 | L52F | Ctt | Ttt | 6 | 6 | B.1.466.2 | 0.002347 |
ORF3a | 52 | L52P | cTt | cCt | 6 | 6 | B.1.617.2 | 0.000023 |
ORF3a | 52 | L52L | ctT | ctC | 6 | 6 | P.1.14 | 0.000287 |
ORF3a | 52 | L52F | Ctt | Ttt | 6 | 6 | P.2 | 0.00112 |
ORF3a | 52 | L52F | Ctt | Ttt | 6 | 6 | Q.8 | 0.000989 |
ORF3a | 52 | L52I | Ctt | Att | 5 | 5 | AY.102 | 0.000133 |
ORF3a | 52 | L52F | Ctt | Ttt | 5 | 5 | AY.106 | 0.001674 |
ORF3a | 52 | L52P | cTt | cCt | 5 | 5 | AY.25 | 0.00003 |
ORF3a | 52 | L52F | Ctt | Ttt | 5 | 5 | AY.27 | 0.000324 |
ORF3a | 52 | L52I | Ctt | Att | 5 | 5 | AY.4.2 | 0.000108 |
ORF3a | 52 | L52F | Ctt | Ttt | 5 | 5 | AY.4.2 | 0.000108 |
ORF3a | 52 | L52V | Ctt | Gtt | 5 | 5 | AY.68 | 0.001369 |
ORF3a | 52 | L52P | cTt | cCt | 5 | 5 | B.1.1 | 0.000091 |
ORF3a | 52 | L52F | Ctt | Ttt | 5 | 5 | B.1.221 | 0.000355 |
ORF3a | 52 | L52F | Ctt | Ttt | 5 | 5 | B.1.237 | 0.024876 |
ORF3a | 52 | L52F | Ctt | Ttt | 5 | 5 | B.1.243 | 0.000348 |
ORF3a | 52 | L52F | Ctt | Ttt | 5 | 5 | B.1.356 | 0.008636 |
ORF3a | 52 | L52F | Ctt | Ttt | 5 | 5 | B.1.361 | 0.006443 |
ORF3a | 52 | L52V | Ctt | Gtt | 5 | 5 | B.1.577 | 0.003436 |
ORF3a | 52 | L52F | Ctt | Ttt | 5 | 5 | C.16 | 0.005302 |
ORF3a | 52 | L52F | Ctt | Ttt | 5 | 5 | D.2 | 0.000375 |
ORF3a | 52 | L52F | Ctt | Ttt | 5 | 5 | P.1.14 | 0.000239 |
ORF3a | 52 | L52P | cTT | cCA | 2 | 4 | 0.111111 | |
ORF3a | 52 | L52H | cTt | cAt | 2 | 4 | 0.111111 | |
ORF3a | 52 | L52N | CTT | AAC | 2 | 4 | 0.111111 | |
ORF3a | 52 | L52P | cTt | cCt | 2 | 4 | 0.111111 | |
ORF3a | 52 | L52H | cTT | cAC | 2 | 4 | 0.111111 | |
ORF3a | 52 | L52I | Ctt | Att | 2 | 4 | 0.111111 | |
ORF3a | 52 | L52I | CtT | AtC | 2 | 4 | 0.111111 | |
ORF3a | 52 | L52N | CTt | AAt | 2 | 4 | 0.111111 | |
ORF3a | 52 | L52R | cTt | cGt | 4 | 4 | All | 0.000001 |
ORF3a | 52 | L52N | CTt | AAt | 2 | 4 | All | 0 |
ORF3a | 52 | L52N | CTT | AAC | 2 | 4 | All | 0 |
ORF3a | 52 | L52L | ctT | ctG | 3 | 4 | AY.102 | 0.00008 |
ORF3a | 52 | L52L | ctT | ctC | 1 | 4 | AY.102 | 0.000027 |
ORF3a | 52 | L52F | Ctt | Ttt | 4 | 4 | AY.121 | 0.000541 |
ORF3a | 52 | L52F | Ctt | Ttt | 4 | 4 | AY.36 | 0.000593 |
ORF3a | 52 | L52V | Ctt | Gtt | 4 | 4 | AY.39 | 0.000099 |
ORF3a | 52 | L52del | CTT | --- | 4 | 4 | AY.4.5 | 0.00043 |
ORF3a | 52 | L52P | cTt | cCt | 4 | 4 | AY.44 | 0.000024 |
ORF3a | 52 | L52L | ctT | ctC | 3 | 4 | AY.44 | 0.000018 |
ORF3a | 52 | L52L | ctT | ctG | 1 | 4 | AY.44 | 0.000006 |
ORF3a | 52 | L52F | Ctt | Ttt | 4 | 4 | AY.61 | 0.000419 |
ORF3a | 52 | L52F | Ctt | Ttt | 4 | 4 | AY.77 | 0.00451 |
ORF3a | 52 | L52F | Ctt | Ttt | 4 | 4 | AY.98.1 | 0.000194 |
ORF3a | 52 | L52F | Ctt | Ttt | 4 | 4 | B.1.1.306 | 0.001754 |
ORF3a | 52 | L52L | ctT | ctC | 2 | 4 | B.1.1.519 | 0.000079 |
ORF3a | 52 | L52L | ctT | ctG | 2 | 4 | B.1.1.519 | 0.000079 |
ORF3a | 52 | L52F | Ctt | Ttt | 4 | 4 | B.1.1.63 | 0.001543 |
ORF3a | 52 | L52del | CTT | --- | 4 | 4 | B.1.177 | 0.000053 |
ORF3a | 52 | L52F | Ctt | Ttt | 4 | 4 | B.1.177.56 | 0.00267 |
ORF3a | 52 | L52F | Ctt | Ttt | 4 | 4 | B.1.177.81 | 0.000757 |
ORF3a | 52 | L52F | Ctt | Ttt | 4 | 4 | B.1.470 | 0.005618 |
ORF3a | 52 | L52del | CTT | --- | 4 | 4 | B.1.617.2 | 0.000015 |
ORF3a | 52 | L52F | Ctt | Ttt | 4 | 4 | P.1.10 | 0.001078 |
ORF3a | 52 | L52F | Ctt | Ttt | 4 | 4 | Q.3 | 0.00058 |
ORF3a | 52 | L52F | Ctt | Ttt | 3 | 3 | A.2.5.1 | 0.014423 |
ORF3a | 52 | L52P | cTt | cCt | 3 | 3 | AY.100 | 0.000138 |
ORF3a | 52 | L52L | ctT | ctC | 3 | 3 | AY.103 | 0.000019 |
ORF3a | 52 | L52P | cTt | cCt | 3 | 3 | AY.103 | 0.000019 |
ORF3a | 52 | L52F | Ctt | Ttt | 3 | 3 | AY.117 | 0.000254 |
ORF3a | 52 | L52F | Ctt | Ttt | 3 | 3 | AY.118 | 0.000188 |
ORF3a | 52 | L52I | Ctt | Att | 3 | 3 | AY.23 | 0.000209 |
ORF3a | 52 | L52F | Ctt | Ttt | 3 | 3 | AY.29.1 | 0.000662 |
ORF3a | 52 | L52F | Ctt | Ttt | 3 | 3 | AY.37 | 0.000948 |
ORF3a | 52 | L52del2 | cTT | c-- | 3 | 3 | AY.4 | 0.000005 |
ORF3a | 52 | L52L | ctT | ctC | 3 | 3 | AY.4.4 | 0.001227 |
ORF3a | 52 | L52F | Ctt | Ttt | 3 | 3 | AY.55 | 0.002752 |
ORF3a | 52 | L52del2 | cTT | c-- | 3 | 3 | AY.58 | 0.002722 |
ORF3a | 52 | L52F | Ctt | Ttt | 3 | 3 | AY.64 | 0.001786 |
ORF3a | 52 | L52F | Ctt | Ttt | 3 | 3 | AY.7 | 0.000588 |
ORF3a | 52 | L52F | Ctt | Ttt | 3 | 3 | AY.90 | 0.002053 |
ORF3a | 52 | L52P | cTt | cCt | 3 | 3 | AY.98.1 | 0.000145 |
ORF3a | 52 | L52del | CTT | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF3a | 52 | L52F | Ctt | Ttt | 3 | 3 | B.1.1.214 | 0.000166 |
ORF3a | 52 | L52F | Ctt | Ttt | 3 | 3 | B.1.1.257 | 0.029126 |
ORF3a | 52 | L52F | Ctt | Ttt | 3 | 3 | B.1.1.301 | 0.003538 |
ORF3a | 52 | L52F | Ctt | Ttt | 3 | 3 | B.1.1.328 | 0.050847 |
ORF3a | 52 | L52F | Ctt | Ttt | 3 | 3 | B.1.1.389 | 0.018182 |
ORF3a | 52 | L52F | Ctt | Ttt | 3 | 3 | B.1.1.54 | 0.009063 |
ORF3a | 52 | L52L | ctT | ctC | 3 | 3 | B.1.160 | 0.000094 |
ORF3a | 52 | L52I | Ctt | Att | 3 | 3 | B.1.177 | 0.00004 |
ORF3a | 52 | L52L | ctT | ctC | 3 | 3 | B.1.177.44 | 0.001557 |
ORF3a | 52 | L52F | Ctt | Ttt | 3 | 3 | B.1.177.53 | 0.007177 |
ORF3a | 52 | L52F | Ctt | Ttt | 3 | 3 | B.1.177.8 | 0.002257 |
ORF3a | 52 | L52del1 | cTt | c-t | 3 | 3 | B.1.177.82 | 0.001432 |
ORF3a | 52 | L52P | cTt | cCt | 2 | 3 | B.1.2 | 0.000018 |
ORF3a | 52 | L52P | cTT | cCA | 1 | 3 | B.1.2 | 0.000009 |
ORF3a | 52 | L52F | Ctt | Ttt | 3 | 3 | B.1.258.17 | 0.000312 |
ORF3a | 52 | L52del1 | cTt | c-t | 3 | 3 | B.1.351 | 0.000089 |
ORF3a | 52 | L52F | Ctt | Ttt | 3 | 3 | B.1.36 | 0.000438 |
ORF3a | 52 | L52F | Ctt | Ttt | 3 | 3 | B.1.595 | 0.000783 |
ORF3a | 52 | L52del2 | cTT | c-- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF3a | 52 | L52F | Ctt | Ttt | 3 | 3 | C.37 | 0.000348 |
ORF3a | 52 | L52F | Ctt | Ttt | 2 | 2 | A | 0.000774 |
ORF3a | 52 | L52F | Ctt | Ttt | 2 | 2 | A.2.5 | 0.000998 |
ORF3a | 52 | L52V | Ctt | Gtt | 2 | 2 | AY.102 | 0.000053 |
ORF3a | 52 | L52del | CTT | --- | 2 | 2 | AY.103 | 0.000012 |
ORF3a | 52 | L52H | cTt | cAt | 2 | 2 | AY.103 | 0.000012 |
ORF3a | 52 | L52del | CTT | --- | 2 | 2 | AY.113 | 0.000285 |
ORF3a | 52 | L52F | Ctt | Ttt | 2 | 2 | AY.113 | 0.000285 |
ORF3a | 52 | L52L | ctT | ctC | 2 | 2 | AY.119 | 0.000071 |
ORF3a | 52 | L52F | Ctt | Ttt | 2 | 2 | AY.20 | 0.000078 |
ORF3a | 52 | L52F | Ctt | Ttt | 2 | 2 | AY.23 | 0.000139 |
ORF3a | 52 | L52del | CTT | --- | 2 | 2 | AY.25 | 0.000012 |
ORF3a | 52 | L52I | Ctt | Att | 2 | 2 | AY.29 | 0.000032 |
ORF3a | 52 | L52L | ctT | ctC | 2 | 2 | AY.3 | 0.00002 |
ORF3a | 52 | L52P | cTt | cCt | 2 | 2 | AY.3 | 0.00002 |
ORF3a | 52 | L52I | Ctt | Att | 2 | 2 | AY.3.1 | 0.000171 |
ORF3a | 52 | L52F | Ctt | Ttt | 2 | 2 | AY.3.1 | 0.000171 |
ORF3a | 52 | L52F | Ctt | Ttt | 2 | 2 | AY.34.1 | 0.00102 |
ORF3a | 52 | L52del | CTT | --- | 2 | 2 | AY.39.1 | 0.000079 |
ORF3a | 52 | L52F | Ctt | Ttt | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF3a | 52 | L52F | Ctt | Ttt | 2 | 2 | AY.46 | 0.000208 |
ORF3a | 52 | L52del | CTT | --- | 2 | 2 | AY.46.2 | 0.001271 |
ORF3a | 52 | L52del | CTT | --- | 2 | 2 | AY.5 | 0.000041 |
ORF3a | 52 | L52del1 | cTt | c-t | 2 | 2 | AY.52 | 0.001629 |
ORF3a | 52 | L52F | Ctt | Ttt | 2 | 2 | AY.66 | 0.002139 |
ORF3a | 52 | L52F | Ctt | Ttt | 2 | 2 | AY.69 | 0.000373 |
ORF3a | 52 | L52F | Ctt | Ttt | 2 | 2 | AY.70 | 0.000417 |
ORF3a | 52 | L52F | Ctt | Ttt | 2 | 2 | AY.74 | 0.000231 |
ORF3a | 52 | L52del | CTT | --- | 2 | 2 | AY.81 | 0.003984 |
ORF3a | 52 | L52F | Ctt | Ttt | 2 | 2 | AY.82 | 0.002714 |
ORF3a | 52 | L52I | Ctt | Att | 2 | 2 | AY.84 | 0.000875 |
ORF3a | 52 | L52F | Ctt | Ttt | 2 | 2 | AY.9.1 | 0.000167 |
ORF3a | 52 | L52P | cTt | cCt | 2 | 2 | AY.99.2 | 0.000184 |
ORF3a | 52 | L52V | Ctt | Gtt | 2 | 2 | B.1 | 0.000018 |
ORF3a | 52 | L52H | cTt | cAt | 2 | 2 | B.1 | 0.000018 |
ORF3a | 52 | L52F | Ctt | Ttt | 2 | 2 | B.1.1.222 | 0.000408 |
ORF3a | 52 | L52F | Ctt | Ttt | 2 | 2 | B.1.1.304 | 0.005618 |
ORF3a | 52 | L52F | Ctt | Ttt | 2 | 2 | B.1.1.316 | 0.00185 |
ORF3a | 52 | L52P | cTt | cCt | 2 | 2 | B.1.1.482 | 0.046512 |
ORF3a | 52 | L52F | Ctt | Ttt | 2 | 2 | B.1.1.517 | 0.013605 |
ORF3a | 52 | L52del2 | cTT | c-- | 1 | 2 | B.1.1.7 | 0.000001 |
ORF3a | 52 | L52del2 | CTT | --N | 1 | 2 | B.1.1.7 | 0.000001 |
ORF3a | 52 | L52F | Ctt | Ttt | 2 | 2 | B.1.146 | 0.008475 |
ORF3a | 52 | L52del1 | cTt | c-t | 2 | 2 | B.1.160 | 0.000062 |
ORF3a | 52 | L52P | cTt | cCt | 2 | 2 | B.1.177 | 0.000026 |
ORF3a | 52 | L52F | Ctt | Ttt | 2 | 2 | B.1.177.73 | 0.001133 |
ORF3a | 52 | L52F | Ctt | Ttt | 2 | 2 | B.1.177.86 | 0.000367 |
ORF3a | 52 | L52del | CTT | --- | 2 | 2 | B.1.241 | 0.001623 |
ORF3a | 52 | L52F | Ctt | Ttt | 2 | 2 | B.1.258.14 | 0.001961 |
ORF3a | 52 | L52L | ctT | ctC | 2 | 2 | B.1.351 | 0.000059 |
ORF3a | 52 | L52F | Ctt | Ttt | 2 | 2 | B.1.351.5 | 0.001199 |
ORF3a | 52 | L52L | ctT | ctC | 2 | 2 | B.1.36 | 0.000292 |
ORF3a | 52 | L52F | Ctt | Ttt | 2 | 2 | B.1.36.8 | 0.002 |
ORF3a | 52 | L52F | Ctt | Ttt | 2 | 2 | B.1.362 | 0.003082 |
ORF3a | 52 | L52L | ctT | ctC | 2 | 2 | B.1.425 | 0.005988 |
ORF3a | 52 | L52F | Ctt | Ttt | 2 | 2 | B.1.432 | 0.022472 |
ORF3a | 52 | L52F | Ctt | Ttt | 2 | 2 | B.1.517 | 0.000854 |
ORF3a | 52 | L52F | Ctt | Ttt | 2 | 2 | B.1.544 | 0.012048 |
ORF3a | 52 | L52I | Ctt | Att | 2 | 2 | B.1.576 | 0.001813 |
ORF3a | 52 | L52F | Ctt | Ttt | 2 | 2 | B.1.596 | 0.000174 |
ORF3a | 52 | L52L | ctT | ctG | 2 | 2 | B.1.596 | 0.000174 |
ORF3a | 52 | L52V | Ctt | Gtt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF3a | 52 | L52F | Ctt | Ttt | 2 | 2 | B.1.617.3 | 0.00597 |
ORF3a | 52 | L52L | ctT | ctC | 2 | 2 | B.1.620 | 0.001892 |
ORF3a | 52 | L52del1 | cTt | c-t | 2 | 2 | B.1.627 | 0.00404 |
ORF3a | 52 | L52V | Ctt | Gtt | 2 | 2 | B.1.637 | 0.000146 |
ORF3a | 52 | L52L | ctT | ctC | 2 | 2 | B.40 | 0.000729 |
ORF3a | 52 | L52I | Ctt | Att | 2 | 2 | C.35 | 0.001548 |
ORF3a | 52 | L52del | CTT | --- | 2 | 2 | P.1 | 0.000032 |
ORF3a | 52 | L52L | ctT | ctC | 1 | 2 | P.1 | 0.000016 |
ORF3a | 52 | L52L | ctT | ctG | 1 | 2 | P.1 | 0.000016 |
ORF3a | 52 | L52F | Ctt | Ttt | 2 | 2 | P.1.12 | 0.000968 |
ORF3a | 52 | L52I | Ctt | Att | 2 | 2 | P.1.14 | 0.000096 |
ORF3a | 52 | L52F | Ctt | Ttt | 2 | 2 | R.1 | 0.00018 |
ORF3a | 52 | L52del | CTT | --- | 2 | 2 | U.3 | 0.007722 |
ORF3a | 52 | L52I | Ctt | Att | 1 | 1 | A.1 | 0.000282 |
ORF3a | 52 | L52L | ctT | ctC | 1 | 1 | A.2.2 | 0.001689 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | AD.1 | 0.004115 |
ORF3a | 52 | L52del | CTT | --- | 1 | 1 | AH.3 | 0.003802 |
ORF3a | 52 | L52H | cTT | cAC | 1 | 1 | AU.1 | 0.001266 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | AY.1 | 0.000396 |
ORF3a | 52 | L52I | Ctt | Att | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | AY.101 | 0.00049 |
ORF3a | 52 | L52H | cTt | cAt | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 52 | L52V | Ctt | Gtt | 1 | 1 | AY.103 | 0.000006 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | AY.105 | 0.000643 |
ORF3a | 52 | L52del | CTT | --- | 1 | 1 | AY.105 | 0.000643 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | AY.107 | 0.000466 |
ORF3a | 52 | L52del | CTT | --- | 1 | 1 | AY.107 | 0.000466 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | AY.110 | 0.000113 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 52 | L52del | CTT | --- | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 52 | L52L | ctT | ctC | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 52 | L52P | cTt | cCt | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 52 | L52del | CTT | --- | 1 | 1 | AY.114 | 0.000231 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | AY.114 | 0.000231 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | AY.116 | 0.000287 |
ORF3a | 52 | L52I | Ctt | Att | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 52 | L52del | CTT | --- | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 52 | L52L | ctT | ctC | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 52 | L52del | CTT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | AY.120.2 | 0.001285 |
ORF3a | 52 | L52L | ctT | ctC | 1 | 1 | AY.121 | 0.000135 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | AY.13 | 0.000161 |
ORF3a | 52 | L52del | CTT | --- | 1 | 1 | AY.14 | 0.000088 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | AY.14 | 0.000088 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | AY.16.1 | 0.00047 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | AY.19 | 0.00114 |
ORF3a | 52 | L52I | Ctt | Att | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 52 | L52L | ctT | ctC | 1 | 1 | AY.21 | 0.001898 |
ORF3a | 52 | L52del | CTT | --- | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 52 | L52L | ctT | ctC | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 52 | L52H | cTt | cAt | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | AY.28 | 0.00189 |
ORF3a | 52 | L52L | ctT | ctC | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 52 | L52del | CTT | --- | 1 | 1 | AY.29.1 | 0.000221 |
ORF3a | 52 | L52I | Ctt | Att | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 52 | L52del | CTT | --- | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 52 | L52V | Ctt | Gtt | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | AY.32 | 0.000532 |
ORF3a | 52 | L52L | ctT | ctC | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 52 | L52I | Ctt | Att | 1 | 1 | AY.34 | 0.000097 |
ORF3a | 52 | L52L | ctT | ctC | 1 | 1 | AY.35 | 0.000233 |
ORF3a | 52 | L52I | Ctt | Att | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 52 | L52L | ctT | ctC | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 52 | L52del | CTT | --- | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 52 | L52P | cTt | cCt | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 52 | L52V | Ctt | Gtt | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 52 | L52del | CTT | --- | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | AY.4.4 | 0.000409 |
ORF3a | 52 | L52P | cTt | cCt | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 52 | L52I | Ctt | Att | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 52 | L52L | ctT | ctC | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 52 | L52R | cTt | cGt | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 52 | L52H | cTT | cAC | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 52 | L52del2 | cTT | c-- | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 52 | L52I | Ctt | Att | 1 | 1 | AY.45 | 0.000122 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | AY.45 | 0.000122 |
ORF3a | 52 | L52L | ctT | ctC | 1 | 1 | AY.45 | 0.000122 |
ORF3a | 52 | L52L | ctT | ctC | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 52 | L52L | ctT | ctC | 1 | 1 | AY.46.4 | 0.000165 |
ORF3a | 52 | L52V | Ctt | Gtt | 1 | 1 | AY.47 | 0.000031 |
ORF3a | 52 | L52del | CTT | --- | 1 | 1 | AY.47 | 0.000031 |
ORF3a | 52 | L52I | Ctt | Att | 1 | 1 | AY.48 | 0.000465 |
ORF3a | 52 | L52L | ctT | ctC | 1 | 1 | AY.5 | 0.000021 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | AY.5.3 | 0.000337 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | AY.5.4 | 0.000277 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | AY.50 | 0.000799 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | AY.53 | 0.000288 |
ORF3a | 52 | L52I | Ctt | Att | 1 | 1 | AY.55 | 0.000917 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | AY.58 | 0.000907 |
ORF3a | 52 | L52L | ctT | ctC | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 52 | L52L | ctT | ctC | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 52 | L52H | cTt | cAt | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | AY.72 | 0.001361 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | AY.75 | 0.000056 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | AY.75.1 | 0.00018 |
ORF3a | 52 | L52L | ctT | ctC | 1 | 1 | AY.77 | 0.001127 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | AY.84 | 0.000437 |
ORF3a | 52 | L52I | Ctt | Att | 1 | 1 | AY.86 | 0.00083 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | AY.86 | 0.00083 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | AY.9 | 0.000068 |
ORF3a | 52 | L52del | CTT | --- | 1 | 1 | AY.9 | 0.000068 |
ORF3a | 52 | L52del | CTT | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF3a | 52 | L52V | Ctt | Gtt | 1 | 1 | AY.9.2 | 0.000037 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | AY.93 | 0.000273 |
ORF3a | 52 | L52L | ctT | ctC | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 52 | L52del | CTT | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 52 | L52del | CTT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF3a | 52 | L52del | CTT | --- | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 52 | L52del | CTT | --- | 1 | 1 | B | 0.000128 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B | 0.000128 |
ORF3a | 52 | L52del | CTT | --- | 1 | 1 | B.1 | 0.000009 |
ORF3a | 52 | L52del1 | cTt | c-t | 1 | 1 | B.1 | 0.000009 |
ORF3a | 52 | L52R | cTt | cGt | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.1.101 | 0.01 |
ORF3a | 52 | L52del | CTT | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.1.141 | 0.002012 |
ORF3a | 52 | L52I | Ctt | Att | 1 | 1 | B.1.1.159 | 0.004673 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.1.161 | 0.003534 |
ORF3a | 52 | L52L | ctT | ctC | 1 | 1 | B.1.1.176 | 0.000439 |
ORF3a | 52 | L52H | cTt | cAt | 1 | 1 | B.1.1.194 | 0.00495 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF3a | 52 | L52L | ctT | ctA | 1 | 1 | B.1.1.284 | 0.000107 |
ORF3a | 52 | L52I | Ctt | Att | 1 | 1 | B.1.1.291 | 0.000742 |
ORF3a | 52 | L52R | cTt | cGt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.1.317 | 0.000412 |
ORF3a | 52 | L52L | ctT | ctC | 1 | 1 | B.1.1.318 | 0.000302 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.1.318 | 0.000302 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.1.319 | 0.017544 |
ORF3a | 52 | L52L | ctT | ctC | 1 | 1 | B.1.1.322 | 0.008772 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.1.326 | 0.001761 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF3a | 52 | L52L | ctT | ctC | 1 | 1 | B.1.1.346 | 0.029412 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.1.353 | 0.020833 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.1.396 | 0.045455 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.1.398 | 0.003226 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 52 | L52del | CTT | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.1.432 | 0.001266 |
ORF3a | 52 | L52I | Ctt | Att | 1 | 1 | B.1.1.446 | 0.076923 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.1.448 | 0.002033 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.1.486 | 0.001577 |
ORF3a | 52 | L52del | CTT | --- | 1 | 1 | B.1.1.50 | 0.000679 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.1.57 | 0.011494 |
ORF3a | 52 | L52L | ctT | ctC | 1 | 1 | B.1.1.63 | 0.000386 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.1.71 | 0.006061 |
ORF3a | 52 | L52I | Ctt | Att | 1 | 1 | B.1.1.98 | 0.018519 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.103 | 0.019231 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.160.25 | 0.011111 |
ORF3a | 52 | L52del | CTT | --- | 1 | 1 | B.1.160.33 | 0.004425 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.160.7 | 0.002079 |
ORF3a | 52 | L52L | ctT | ctC | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 52 | L52del2 | CTt | --t | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.177.12 | 0.000152 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.177.15 | 0.000631 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.177.18 | 0.00116 |
ORF3a | 52 | L52del | CTT | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF3a | 52 | L52del1 | cTt | c-t | 1 | 1 | B.1.177.6 | 0.000977 |
ORF3a | 52 | L52L | ctT | ctC | 1 | 1 | B.1.177.60 | 0.000218 |
ORF3a | 52 | L52I | Ctt | Att | 1 | 1 | B.1.177.7 | 0.000165 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.177.82 | 0.000477 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.189 | 0.004292 |
ORF3a | 52 | L52P | cTt | cCt | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 52 | L52del | CTT | --- | 1 | 1 | B.1.221.1 | 0.002907 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.222 | 0.001692 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.232 | 0.000537 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.234 | 0.000132 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.240 | 0.000216 |
ORF3a | 52 | L52L | ctT | ctC | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 52 | L52P | cTt | cCt | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 52 | L52L | ctT | ctC | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.311 | 0.000275 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.336 | 0.002439 |
ORF3a | 52 | L52del | CTT | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 52 | L52H | cTt | cAt | 1 | 1 | B.1.36 | 0.000146 |
ORF3a | 52 | L52I | Ctt | Att | 1 | 1 | B.1.36 | 0.000146 |
ORF3a | 52 | L52del1 | cTt | c-t | 1 | 1 | B.1.36.1 | 0.00114 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.36.1 | 0.00114 |
ORF3a | 52 | L52R | cTt | cGt | 1 | 1 | B.1.36.17 | 0.000494 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.36.18 | 0.00042 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.367 | 0.000792 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.369 | 0.000285 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.389 | 0.001002 |
ORF3a | 52 | L52del | CTT | --- | 1 | 1 | B.1.422 | 0.000812 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.423 | 0.010204 |
ORF3a | 52 | L52I | Ctt | Att | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 52 | L52V | Ctt | Gtt | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 52 | L52L | ctT | ctC | 1 | 1 | B.1.456 | 0.003268 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.468 | 0.005714 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.560 | 0.00463 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.561 | 0.000397 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.576 | 0.000907 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.577 | 0.000687 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.582 | 0.000491 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.1.587 | 0.001898 |
ORF3a | 52 | L52P | cTt | cCt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 52 | L52V | Ctt | Gtt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 52 | L52I | Ctt | Att | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 52 | L52del | CTT | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | B.29 | 0.003509 |
ORF3a | 52 | L52L | ctT | ctC | 1 | 1 | C.2 | 0.016129 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | C.23 | 0.005814 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | C.36 | 0.000911 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | C.36.3 | 0.000567 |
ORF3a | 52 | L52V | Ctt | Gtt | 1 | 1 | C.37 | 0.000116 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | C.4 | 0.01 |
ORF3a | 52 | L52del | CTT | --- | 1 | 1 | D.2 | 0.000075 |
ORF3a | 52 | L52V | Ctt | Gtt | 1 | 1 | P.1 | 0.000016 |
ORF3a | 52 | L52I | Ctt | Att | 1 | 1 | P.1 | 0.000016 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | P.1.13 | 0.000898 |
ORF3a | 52 | L52del | CTT | --- | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 52 | L52I | Ctt | Att | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 52 | L52del | CTT | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | P.4 | 0.003802 |
ORF3a | 52 | L52I | Ctt | Att | 1 | 1 | Q.1 | 0.000126 |
ORF3a | 52 | L52del1 | cTt | c-t | 1 | 1 | R.1 | 0.00009 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | W.2 | 0.004831 |
ORF3a | 52 | L52F | Ctt | Ttt | 1 | 1 | Z.1 | 0.00289 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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