CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 49

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a49G49VnonsyngGcgTc10626106220.99962425537-25539
ORF3a49G49VnonsyngGCgTT1062640.00037643525537-25539
ORF3a49G49CnonsynGgcTgc11221122125537-25539
ORF3a49G49GsynggCggT7266060.83471125537-25539
ORF3a49G49GsynggCggA7261090.15013825537-25539
ORF3a49G49GsynggCggG726110.015151525537-25539
ORF3a49G49SnonsynGgcAgc630630125537-25539
ORF3a49G49DnonsyngGcgAc203203125537-25539
ORF3a49G49deldelGGC---107107125537-25539
ORF3a49G49InonsynGGcATc3333125537-25539
ORF3a49G49FnonsynGGcTTc2828125537-25539
ORF3a49G49AnonsyngGcgCc2121125537-25539
ORF3a49G49RnonsynGgcCgc66125537-25539
ORF3a49G49YnonsynGGcTAc44125537-25539
ORF3a49G49XnonsynGGCTAA420.525537-25539
ORF3a49G49XnonsynGgCTgA420.525537-25539
ORF3a49G49EnonsyngGCgAA22125537-25539
ORF3a49G49del1delGgc-gc22125537-25539
ORF3a49G49NnonsynGGcAAc210.525537-25539
ORF3a49G49del2delgGCg--210.525537-25539
ORF3a49G49del2delGGc--c210.525537-25539
ORF3a49G49NnonsynGGCAAT210.525537-25539
ORF3a49G49LnonsynGGcCTc11125537-25539

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a49G49VgGcgTc1062210626All0.002032
ORF3a49G49VgGCgTT410626All0.000001
ORF3a49G49VgGcgTc36453645B.1.617.20.013725
ORF3a49G49VgGcgTc12761277AY.1020.033832
ORF3a49G49VgGCgTT11277AY.1020.000027
ORF3a49G49VgGcgTc11521152AY.60.04738
ORF3a49G49CGgcTgc11221122All0.000215
ORF3a49G49VgGcgTc907907AY.40.001412
ORF3a49G49GggCggT606726All0.000116
ORF3a49G49GggCggA109726All0.000021
ORF3a49G49GggCggG11726All0.000002
ORF3a49G49SGgcAgc630630All0.00012
ORF3a49G49VgGcgTc489489B.1.1.70.000438
ORF3a49G49VgGcgTc345345AY.440.0021
ORF3a49G49VgGcgTc319319AY.430.001413
ORF3a49G49CGgcTgc293293AY.40.000456
ORF3a49G49VgGcgTc238238AY.1030.001478
ORF3a49G49SGgcAgc210210B.1.3510.006243
ORF3a49G49DgGcgAc203203All0.000039
ORF3a49G49VgGcgTc200200AY.390.004942
ORF3a49G49SGgcAgc130130AY.40.000202
ORF3a49G49CGgcTgc120120B.1.1.70.000107
ORF3a49G49GggCggT109112B.1.20.00096
ORF3a49G49GggCggA3112B.1.20.000026
ORF3a49G49VgGcgTc111111B.1.20.000977
ORF3a49G49delGGC---107107All0.00002
ORF3a49G49GggCggT97103B.1.1.70.000087
ORF3a49G49GggCggG5103B.1.1.70.000004
ORF3a49G49GggCggA1103B.1.1.70.000001
ORF3a49G49VgGcgTc9797B.1.4290.002282
ORF3a49G49VgGcgTc8383AY.120.2.10.041355
ORF3a49G49CGgcTgc8181AY.530.023289
ORF3a49G49VgGcgTc7878B.1.3510.002319
ORF3a49G49VgGcgTc7373AY.1200.002714
ORF3a49G49VgGcgTc6969AY.1170.005832
ORF3a49G49VgGcgTc6363AY.4.20.001366
ORF3a49G49CGgcTgc6262AY.430.000275
ORF3a49G49VgGcgTc6060AY.34.10.030597
ORF3a49G49GggCggT6060AY.440.000365
ORF3a49G49DgGcgAc5959B.1.1.70.000053
ORF3a49G49CGgcTgc5757B.1.1600.001778
ORF3a49G49VgGcgTc5656AY.260.001585
ORF3a49G49VgGcgTc5656AY.330.00374
ORF3a49G49VgGcgTc5555AY.250.000331
ORF3a49G49CGgcTgc5555B.1.617.20.000207
ORF3a49G49VgGcgTc5555B.1.6200.052034
ORF3a49G49CGgcTgc5252AY.390.001285
ORF3a49G49GggCggA5252B.1.1.3970.117117
ORF3a49G49VgGcgTc5050AY.230.003487
ORF3a49G49VgGcgTc4545AY.460.004684
ORF3a49G49GggCggT3840B.1.617.20.000143
ORF3a49G49GggCggA240B.1.617.20.000008
ORF3a49G49VgGcgTc3939AY.50.000805
ORF3a49G49VgGcgTc3737AY.450.004502
ORF3a49G49VgGcgTc3535AY.1130.004984
ORF3a49G49VgGcgTc3434B.1.10.000617
ORF3a49G49VgGcgTc3434B.1.1770.000448
ORF3a49G49IGGcATc3333All0.000006
ORF3a49G49VgGcgTc3333AY.920.00948
ORF3a49G49CGgcTgc3232AY.440.000195
ORF3a49G49SGgcAgc3131B.1.3340.563636
ORF3a49G49SGgcAgc3030B.1.5940.9375
ORF3a49G49SGgcAgc3030B.1.617.20.000113
ORF3a49G49VgGcgTc2929B.10.000266
ORF3a49G49SGgcAgc2929B.1.1.70.000026
ORF3a49G49FGGcTTc2828All0.000005
ORF3a49G49VgGcgTc2828AY.9.20.001028
ORF3a49G49GggCggT2628B.10.000238
ORF3a49G49GggCggG128B.10.000009
ORF3a49G49GggCggA128B.10.000009
ORF3a49G49VgGcgTc2626P.10.00041
ORF3a49G49CGgcTgc2525AY.1020.000663
ORF3a49G49GggCggA2025B.1.10.000363
ORF3a49G49GggCggT425B.1.10.000073
ORF3a49G49GggCggG125B.1.10.000018
ORF3a49G49GggCggT2424AY.260.000679
ORF3a49G49VgGcgTc2424AY.30.000239
ORF3a49G49GggCggT2324AY.40.000036
ORF3a49G49GggCggA124AY.40.000002
ORF3a49G49VgGcgTc2323AY.1160.006596
ORF3a49G49SGgcAgc2323AY.430.000102
ORF3a49G49AgGcgCc2121All0.000004
ORF3a49G49CGgcTgc2121AY.46.60.001516
ORF3a49G49VgGcgTc2121AY.980.001659
ORF3a49G49CGgcTgc2121B.1.1.1590.098131
ORF3a49G49VgGcgTc2020AY.1180.001253
ORF3a49G49VgGcgTc2020AY.840.008749
ORF3a49G49CGgcTgc1919B.10.000174
ORF3a49G49VgGcgTc1818AY.200.0007
ORF3a49G49CGgcTgc1818B.1.10.000327
ORF3a49G49CGgcTgc1717AY.1030.000106
ORF3a49G49VgGcgTc1717AY.120.10.005457
ORF3a49G49CGgcTgc1717AY.240.007328
ORF3a49G49GggCggT1517AY.430.000066
ORF3a49G49GggCggA217AY.430.000009
ORF3a49G49VgGcgTc1717AY.770.019166
ORF3a49G49GggCggT1717B.1.6090.00815
ORF3a49G49VgGcgTc1616AY.1190.000565
ORF3a49G49VgGcgTc1616AY.540.001526
ORF3a49G49SGgcAgc1616B.10.000147
ORF3a49G49delGGC---1616B.1.1.70.000014
ORF3a49G49CGgcTgc1616B.1.2580.001065
ORF3a49G49VgGcgTc1616P.1.150.003717
ORF3a49G49CGgcTgc1515AY.1000.00069
ORF3a49G49DgGcgAc1515AY.430.000066
ORF3a49G49VgGcgTc1515AY.5.30.005061
ORF3a49G49VgGcgTc1515AY.730.00998
ORF3a49G49VgGcgTc1515B.1.2210.001065
ORF3a49G49delGGC---1414AY.40.000022
ORF3a49G49GggCggT1414AY.60.000576
ORF3a49G49VgGcgTc1414AY.750.000784
ORF3a49G49VgGcgTc1414AY.950.010654
ORF3a49G49VgGcgTc1414P.30.022329
ORF3a49G49VgGcgTc1313AY.1110.002381
ORF3a49G49DgGcgAc1313AY.40.00002
ORF3a49G49VgGcgTc1313AY.420.000523
ORF3a49G49CGgcTgc1313B.1.20.000114
ORF3a49G49DgGcgAc1313B.1.2580.000865
ORF3a49G49GggCggT912AY.30.00009
ORF3a49G49GggCggA312AY.30.00003
ORF3a49G49VgGcgTc1212B.1.1.5190.000477
ORF3a49G49SGgcAgc1212B.1.3240.019262
ORF3a49G49GggCggT1212B.1.3510.000357
ORF3a49G49VgGcgTc1111AY.360.00163
ORF3a49G49VgGcgTc1111AY.98.10.000533
ORF3a49G49SGgcAgc1111B.1.20.000097
ORF3a49G49VgGcgTc1111B.1.4270.000555
ORF3a49G49CGgcTgc1111B.1.4270.000555
ORF3a49G49VgGcgTc1010AY.240.00431
ORF3a49G49CGgcTgc1010AY.250.00006
ORF3a49G49DgGcgAc1010AY.30.000099
ORF3a49G49VgGcgTc1010AY.5.40.002767
ORF3a49G49VgGcgTc1010B.1.1.2440.153846
ORF3a49G49VgGcgTc1010B.1.1600.000312
ORF3a49G49FGGcTTc1010B.1.617.20.000038
ORF3a49G49VgGcgTc99AY.1000.000414
ORF3a49G49VgGcgTc99B.1.1.2160.008014
ORF3a49G49GggCggT99B.1.1770.000119
ORF3a49G49GggCggT99B.1.4270.000454
ORF3a49G49CGgcTgc99P.10.000142
ORF3a49G49VgGcgTc99P.1.10.002859
ORF3a49G49CGgcTgc88A.20.005295
ORF3a49G49VgGcgTc88AY.160.003037
ORF3a49G49SGgcAgc88AY.250.000048
ORF3a49G49VgGcgTc88AY.3.10.000682
ORF3a49G49VgGcgTc88AY.4.50.00086
ORF3a49G49SGgcAgc88AY.440.000049
ORF3a49G49VgGcgTc88AY.550.007339
ORF3a49G49VgGcgTc58AY.75.10.000902
ORF3a49G49VgGCgTT38AY.75.10.000541
ORF3a49G49VgGcgTc88B.1.1.3180.002414
ORF3a49G49DgGcgAc88B.1.617.20.00003
ORF3a49G49VgGcgTc77AY.1100.000789
ORF3a49G49CGgcTgc77AY.290.00011
ORF3a49G49VgGcgTc77AY.290.00011
ORF3a49G49CGgcTgc77AY.30.00007
ORF3a49G49delGGC---77AY.440.000043
ORF3a49G49DgGcgAc77AY.440.000043
ORF3a49G49VgGcgTc77AY.46.40.001152
ORF3a49G49VgGcgTc77AY.590.003708
ORF3a49G49VgGcgTc77AY.610.000733
ORF3a49G49CGgcTgc77AY.750.000392
ORF3a49G49SGgcAgc77B.1.10.000127
ORF3a49G49delGGC---77B.1.1770.000092
ORF3a49G49VgGcgTc77B.1.2400.001509
ORF3a49G49VgGcgTc77Q.30.001015
ORF3a49G49RGgcCgc66All0.000001
ORF3a49G49VgGcgTc66AY.1210.000812
ORF3a49G49AgGcgCc66AY.250.000036
ORF3a49G49VgGcgTc66AY.470.000187
ORF3a49G49VgGcgTc66AY.890.029412
ORF3a49G49VgGcgTc66AY.910.004383
ORF3a49G49IGGcATc66B.10.000055
ORF3a49G49DgGcgAc66B.1.1.1860.020619
ORF3a49G49GggCggT66B.1.1.3810.24
ORF3a49G49SGgcAgc66B.1.4700.008427
ORF3a49G49VgGcgTc66B.1.6280.002114
ORF3a49G49SGgcAgc55AY.1030.000031
ORF3a49G49DgGcgAc55AY.1030.000031
ORF3a49G49GggCggT55AY.1030.000031
ORF3a49G49SGgcAgc55AY.1180.000313
ORF3a49G49GggCggT55AY.1190.000177
ORF3a49G49CGgcTgc55AY.1210.000677
ORF3a49G49VgGcgTc55AY.320.002662
ORF3a49G49SGgcAgc55AY.390.000124
ORF3a49G49delGGC---55AY.430.000022
ORF3a49G49VgGcgTc55AY.530.001438
ORF3a49G49VgGcgTc55AY.580.004537
ORF3a49G49VgGcgTc55AY.680.001369
ORF3a49G49GggCggT55AY.90.000338
ORF3a49G49VgGcgTc55AY.990.005247
ORF3a49G49DgGcgAc55B.10.000046
ORF3a49G49DgGcgAc55B.1.10.000091
ORF3a49G49GggCggT55B.1.1.2290.028736
ORF3a49G49VgGcgTc55B.1.2340.00066
ORF3a49G49VgGcgTc55C.370.00058
ORF3a49G49DgGcgAc55P.10.000079
ORF3a49G49GggCggA440.222222
ORF3a49G49XGGCTAA240.111111
ORF3a49G49XGgCTgA240.111111
ORF3a49G49YGGcTAc44All0.000001
ORF3a49G49XGgCTgA24All0
ORF3a49G49XGGCTAA24All0
ORF3a49G49VgGcgTc44AY.1140.000924
ORF3a49G49CGgcTgc44AY.1190.000141
ORF3a49G49CGgcTgc44AY.200.000155
ORF3a49G49SGgcAgc44AY.200.000155
ORF3a49G49DgGcgAc44AY.250.000024
ORF3a49G49delGGC---44AY.4.50.00043
ORF3a49G49GggCggT44AY.450.000487
ORF3a49G49VgGcgTc44AY.46.20.002541
ORF3a49G49SGgcAgc44AY.540.000381
ORF3a49G49VgGcgTc44AY.700.000834
ORF3a49G49VgGcgTc44AY.740.000463
ORF3a49G49FGGcTTc44AY.750.000224
ORF3a49G49VgGcgTc44AY.780.006163
ORF3a49G49VgGcgTc44AY.810.007968
ORF3a49G49CGgcTgc44AY.90.00027
ORF3a49G49SGgcAgc44AY.9.20.000147
ORF3a49G49GggCggA44AY.99.10.006211
ORF3a49G49SGgcAgc44B.1.1.2220.000816
ORF3a49G49IGGcATc44B.1.1.2910.00297
ORF3a49G49GggCggA44B.1.1.3700.050633
ORF3a49G49CGgcTgc44B.1.1.50.033333
ORF3a49G49DgGcgAc44B.1.1770.000053
ORF3a49G49IGGcATc44B.1.20.000035
ORF3a49G49GggCggT44B.1.2130.059701
ORF3a49G49VgGcgTc44B.1.2430.000278
ORF3a49G49GggCggT34B.1.2430.000209
ORF3a49G49GggCggA14B.1.2430.00007
ORF3a49G49SGgcAgc44B.1.3110.001098
ORF3a49G49VgGcgTc44B.1.3110.001098
ORF3a49G49CGgcTgc44B.1.3510.000119
ORF3a49G49VgGcgTc44B.1.5250.000453
ORF3a49G49GggCggT44B.1.5260.000094
ORF3a49G49VgGcgTc44C.350.003096
ORF3a49G49SGgcAgc44P.10.000063
ORF3a49G49VgGcgTc33A.10.000846
ORF3a49G49DgGcgAc33AY.1000.000138
ORF3a49G49DgGcgAc33AY.1020.00008
ORF3a49G49VgGcgTc33AY.1040.005952
ORF3a49G49VgGcgTc33AY.1050.001929
ORF3a49G49VgGcgTc33AY.1060.001005
ORF3a49G49CGgcTgc33AY.1080.003308
ORF3a49G49GggCggT33AY.1180.000188
ORF3a49G49CGgcTgc33AY.140.000264
ORF3a49G49CGgcTgc33AY.160.001139
ORF3a49G49delGGC---33AY.30.00003
ORF3a49G49SGgcAgc33AY.330.0002
ORF3a49G49CGgcTgc33AY.330.0002
ORF3a49G49VgGcgTc33AY.340.000291
ORF3a49G49GggCggT33AY.390.000074
ORF3a49G49VgGcgTc33AY.410.000882
ORF3a49G49FGGcTTc33AY.430.000013
ORF3a49G49CGgcTgc33AY.450.000365
ORF3a49G49VgGcgTc33AY.46.10.00308
ORF3a49G49VgGcgTc33AY.46.60.000217
ORF3a49G49GggCggT33AY.470.000093
ORF3a49G49GggCggT23AY.50.000041
ORF3a49G49GggCggA13AY.50.000021
ORF3a49G49VgGcgTc33AY.500.002398
ORF3a49G49VgGcgTc33AY.520.002443
ORF3a49G49CGgcTgc33AY.540.000286
ORF3a49G49FGGcTTc33AY.610.000314
ORF3a49G49CGgcTgc33AY.780.004622
ORF3a49G49VgGcgTc33AY.870.002498
ORF3a49G49CGgcTgc33AY.920.000862
ORF3a49G49VgGcgTc33AY.930.000819
ORF3a49G49delGGC---33B.1.10.000054
ORF3a49G49VgGcgTc33B.1.1.2140.000166
ORF3a49G49VgGcgTc33B.1.1.3910.025641
ORF3a49G49FGGcTTc33B.1.1770.00004
ORF3a49G49VgGcgTc33B.1.177.180.00348
ORF3a49G49VgGcgTc33B.1.258.170.000312
ORF3a49G49DgGcgAc33B.1.3510.000089
ORF3a49G49SGgcAgc33B.1.351.50.001799
ORF3a49G49VgGcgTc33B.1.3890.003006
ORF3a49G49GggCggT33B.1.4000.001287
ORF3a49G49GggCggT33B.1.4290.000071
ORF3a49G49GggCggT33B.1.438.10.000322
ORF3a49G49SGgcAgc33B.1.4460.06
ORF3a49G49GggCggG33B.1.5250.000339
ORF3a49G49CGgcTgc33B.1.5960.000261
ORF3a49G49VgGcgTc33B.1.617.10.000387
ORF3a49G49CGgcTgc33B.1.617.10.000387
ORF3a49G49delGGC---33B.1.617.20.000011
ORF3a49G49VgGcgTc33B.1.621.10.001517
ORF3a49G49GggCggT33P.30.004785
ORF3a49G49YGGcTAc220.111111
ORF3a49G49CGgcTgc220.111111
ORF3a49G49DgGcgAc220.111111
ORF3a49G49EgGCgAA220.111111
ORF3a49G49IGGcATc22A.10.000564
ORF3a49G49VgGcgTc22A.23.10.001408
ORF3a49G49del1Ggc-gc22All0
ORF3a49G49EgGCgAA22All0
ORF3a49G49NGGCAAT12All0
ORF3a49G49del2GGc--c12All0
ORF3a49G49NGGcAAc12All0
ORF3a49G49del2gGCg--12All0
ORF3a49G49VgGcgTc22AY.10.000791
ORF3a49G49GggCggT22AY.1000.000092
ORF3a49G49VgGcgTc22AY.1010.000981
ORF3a49G49GggCggT22AY.1020.000053
ORF3a49G49VgGcgTc22AY.1080.002205
ORF3a49G49GggCggT22AY.1110.000366
ORF3a49G49AgGcgCc22AY.1170.000169
ORF3a49G49CGgcTgc22AY.1200.000074
ORF3a49G49GggCggT22AY.200.000078
ORF3a49G49VgGcgTc22AY.210.003795
ORF3a49G49VgGcgTc22AY.220.004184
ORF3a49G49CGgcTgc22AY.230.000139
ORF3a49G49delGGC---22AY.250.000012
ORF3a49G49CGgcTgc22AY.260.000057
ORF3a49G49VgGcgTc22AY.270.000129
ORF3a49G49SGgcAgc22AY.30.00002
ORF3a49G49VgGcgTc22AY.350.000466
ORF3a49G49VgGcgTc22AY.39.10.000079
ORF3a49G49AgGcgCc22AY.39.10.000079
ORF3a49G49RGgcCgc22AY.40.000003
ORF3a49G49CGgcTgc22AY.4.20.000043
ORF3a49G49SGgcAgc22AY.4.20.000043
ORF3a49G49VgGcgTc22AY.4.40.000818
ORF3a49G49CGgcTgc22AY.420.00008
ORF3a49G49delGGC---22AY.46.20.001271
ORF3a49G49CGgcTgc22AY.46.50.000397
ORF3a49G49DgGcgAc22AY.470.000062
ORF3a49G49CGgcTgc22AY.470.000062
ORF3a49G49DgGcgAc22AY.50.000041
ORF3a49G49DgGcgAc22AY.5.40.000553
ORF3a49G49VgGcgTc22AY.570.001312
ORF3a49G49DgGcgAc22AY.60.000082
ORF3a49G49DgGcgAc22AY.610.00021
ORF3a49G49CGgcTgc22AY.620.000871
ORF3a49G49delGGC---22AY.810.003984
ORF3a49G49GggCggT22AY.9.20.000073
ORF3a49G49VgGcgTc22AY.960.004149
ORF3a49G49delGGC---22AY.98.10.000097
ORF3a49G49GggCggT22AY.98.10.000097
ORF3a49G49DgGcgAc22AY.99.20.000184
ORF3a49G49delGGC---22B0.000256
ORF3a49G49GggCggT22B0.000256
ORF3a49G49AgGcgCc22B.10.000018
ORF3a49G49VgGcgTc22B.1.1.100.00223
ORF3a49G49GggCggA22B.1.1.1610.007067
ORF3a49G49CGgcTgc22B.1.1.2160.001781
ORF3a49G49VgGcgTc22B.1.1.3110.000716
ORF3a49G49VgGcgTc22B.1.1.3170.000823
ORF3a49G49CGgcTgc22B.1.1.3170.000823
ORF3a49G49VgGcgTc22B.1.1.330.000842
ORF3a49G49GggCggT22B.1.1.5190.000079
ORF3a49G49YGGcTAc22B.1.1.70.000002
ORF3a49G49IGGcATc22B.1.1690.029851
ORF3a49G49GggCggT12B.1.2340.000132
ORF3a49G49GggCggA12B.1.2340.000132
ORF3a49G49GggCggT22B.1.2400.000431
ORF3a49G49IGGcATc22B.1.2400.000431
ORF3a49G49delGGC---22B.1.2410.001623
ORF3a49G49IGGcATc22B.1.2430.000139
ORF3a49G49VgGcgTc22B.1.2450.0625
ORF3a49G49CGgcTgc22B.1.258.30.00335
ORF3a49G49IGGcATc22B.1.3330.021053
ORF3a49G49GggCggA22B.1.3560.003454
ORF3a49G49VgGcgTc22B.1.36.170.000988
ORF3a49G49VgGcgTc22B.1.3750.001639
ORF3a49G49IGGcATc22B.1.4460.04
ORF3a49G49VgGcgTc22B.1.5090.001732
ORF3a49G49VgGcgTc22B.1.5260.000047
ORF3a49G49CGgcTgc22B.1.5260.000047
ORF3a49G49VgGcgTc22B.1.5650.001621
ORF3a49G49GggCggT22B.1.5950.000522
ORF3a49G49VgGcgTc22B.1.5960.000174
ORF3a49G49GggCggT22B.1.5960.000174
ORF3a49G49GggCggT22B.1.617.10.000258
ORF3a49G49CGgcTgc22B.1.6210.000177
ORF3a49G49VgGcgTc22B.1.6210.000177
ORF3a49G49VgGcgTc22B.1.6370.000146
ORF3a49G49DgGcgAc22B.30.001661
ORF3a49G49GggCggT22C.1.20.008511
ORF3a49G49SGgcAgc22C.370.000232
ORF3a49G49VgGcgTc22D.20.00015
ORF3a49G49VgGcgTc22N.30.011628
ORF3a49G49delGGC---22P.10.000032
ORF3a49G49GggCggT22P.10.000032
ORF3a49G49VgGcgTc22P.1.100.000539
ORF3a49G49CGgcTgc22P.1.140.000096
ORF3a49G49GggCggT22P.1.150.000465
ORF3a49G49VgGcgTc22P.20.000373
ORF3a49G49VgGcgTc22R.10.00018
ORF3a49G49delGGC---22U.30.007722
ORF3a49G49DgGcgAc11A0.000387
ORF3a49G49VgGcgTc11A0.000387
ORF3a49G49VgGcgTc11A.20.000662
ORF3a49G49VgGcgTc11AD.20.000219
ORF3a49G49delGGC---11AH.30.003802
ORF3a49G49LGGcCTc11All0
ORF3a49G49CGgcTgc11AY.100.00053
ORF3a49G49SGgcAgc11AY.1020.000027
ORF3a49G49AgGcgCc11AY.1030.000006
ORF3a49G49delGGC---11AY.1030.000006
ORF3a49G49delGGC---11AY.1050.000643
ORF3a49G49CGgcTgc11AY.1060.000335
ORF3a49G49DgGcgAc11AY.1080.001103
ORF3a49G49VgGcgTc11AY.1090.00074
ORF3a49G49delGGC---11AY.1110.000183
ORF3a49G49GggCggT11AY.1130.000142
ORF3a49G49CGgcTgc11AY.1130.000142
ORF3a49G49DgGcgAc11AY.1140.000231
ORF3a49G49CGgcTgc11AY.1160.000287
ORF3a49G49CGgcTgc11AY.1170.000085
ORF3a49G49AgGcgCc11AY.1180.000063
ORF3a49G49AgGcgCc11AY.1190.000035
ORF3a49G49SGgcAgc11AY.1190.000035
ORF3a49G49DgGcgAc11AY.1190.000035
ORF3a49G49VgGcgTc11AY.120.000316
ORF3a49G49CGgcTgc11AY.120.000316
ORF3a49G49GggCggT11AY.1200.000037
ORF3a49G49delGGC---11AY.1200.000037
ORF3a49G49SGgcAgc11AY.1200.000037
ORF3a49G49GggCggT11AY.120.10.000321
ORF3a49G49SGgcAgc11AY.1210.000135
ORF3a49G49VgGcgTc11AY.140.000088
ORF3a49G49delGGC---11AY.140.000088
ORF3a49G49LGGcCTc11AY.160.00038
ORF3a49G49RGgcCgc11AY.160.00038
ORF3a49G49FGGcTTc11AY.16.10.00047
ORF3a49G49VgGcgTc11AY.190.00114
ORF3a49G49CGgcTgc11AY.190.00114
ORF3a49G49FGGcTTc11AY.200.000039
ORF3a49G49delGGC---11AY.230.00007
ORF3a49G49GggCggT11AY.230.00007
ORF3a49G49DgGcgAc11AY.230.00007
ORF3a49G49SGgcAgc11AY.240.000431
ORF3a49G49del2GGc--c11AY.250.000006
ORF3a49G49FGGcTTc11AY.250.000006
ORF3a49G49GggCggT11AY.250.000006
ORF3a49G49SGgcAgc11AY.260.000028
ORF3a49G49GggCggT11AY.270.000065
ORF3a49G49CGgcTgc11AY.280.00189
ORF3a49G49delGGC---11AY.290.000016
ORF3a49G49GggCggT11AY.290.000016
ORF3a49G49delGGC---11AY.29.10.000221
ORF3a49G49GggCggT11AY.3.10.000085
ORF3a49G49delGGC---11AY.300.000396
ORF3a49G49DgGcgAc11AY.330.000067
ORF3a49G49CGgcTgc11AY.34.10.00051
ORF3a49G49GggCggT11AY.370.000316
ORF3a49G49SGgcAgc11AY.380.000499
ORF3a49G49VgGcgTc11AY.380.000499
ORF3a49G49delGGC---11AY.39.10.00004
ORF3a49G49IGGcATc11AY.40.000002
ORF3a49G49FGGcTTc11AY.40.000002
ORF3a49G49delGGC---11AY.4.20.000022
ORF3a49G49GggCggT11AY.4.2.10.000149
ORF3a49G49CGgcTgc11AY.4.2.10.000149
ORF3a49G49GggCggT11AY.4.50.000107
ORF3a49G49CGgcTgc11AY.400.000964
ORF3a49G49GggCggT11AY.420.00004
ORF3a49G49DgGcgAc11AY.420.00004
ORF3a49G49del1Ggc-gc11AY.430.000004
ORF3a49G49del2gGCg--11AY.430.000004
ORF3a49G49AgGcgCc11AY.430.000004
ORF3a49G49RGgcCgc11AY.440.000006
ORF3a49G49GggCggT11AY.46.40.000165
ORF3a49G49VgGcgTc11AY.480.000465
ORF3a49G49delGGC---11AY.50.000021
ORF3a49G49SGgcAgc11AY.50.000021
ORF3a49G49AgGcgCc11AY.5.30.000337
ORF3a49G49CGgcTgc11AY.5.40.000277
ORF3a49G49GggCggT11AY.560.001605
ORF3a49G49CGgcTgc11AY.610.000105
ORF3a49G49SGgcAgc11AY.610.000105
ORF3a49G49GggCggT11AY.610.000105
ORF3a49G49GggCggT11AY.640.000595
ORF3a49G49CGgcTgc11AY.650.000533
ORF3a49G49VgGcgTc11AY.670.000464
ORF3a49G49CGgcTgc11AY.670.000464
ORF3a49G49GggCggA11AY.670.000464
ORF3a49G49VgGcgTc11AY.690.000187
ORF3a49G49GggCggT11AY.7.10.000113
ORF3a49G49VgGcgTc11AY.710.000475
ORF3a49G49CGgcTgc11AY.720.001361
ORF3a49G49GggCggA11AY.750.000056
ORF3a49G49VgGcgTc11AY.790.001211
ORF3a49G49CGgcTgc11AY.820.001357
ORF3a49G49CGgcTgc11AY.850.000427
ORF3a49G49VgGcgTc11AY.880.000884
ORF3a49G49delGGC---11AY.90.000068
ORF3a49G49delGGC---11AY.9.20.000037
ORF3a49G49VgGcgTc11AY.900.000684
ORF3a49G49GggCggT11AY.980.000079
ORF3a49G49FGGcTTc11AY.980.000079
ORF3a49G49CGgcTgc11AY.980.000079
ORF3a49G49SGgcAgc11AY.98.10.000048
ORF3a49G49delGGC---11AY.990.001049
ORF3a49G49GggCggT11AY.990.001049
ORF3a49G49VgGcgTc11AY.99.10.001553
ORF3a49G49CGgcTgc11AY.99.20.000092
ORF3a49G49delGGC---11AY.99.20.000092
ORF3a49G49VgGcgTc11AY.99.20.000092
ORF3a49G49VgGcgTc11AZ.20.000821
ORF3a49G49VgGcgTc11B0.000128
ORF3a49G49delGGC---11B.10.000009
ORF3a49G49NGGcAAc11B.10.000009
ORF3a49G49VgGcgTc11B.1.1.10.000327
ORF3a49G49IGGcATc11B.1.1.1280.007092
ORF3a49G49delGGC---11B.1.1.1390.022727
ORF3a49G49CGgcTgc11B.1.1.1710.003676
ORF3a49G49CGgcTgc11B.1.1.1860.003436
ORF3a49G49CGgcTgc11B.1.1.1890.001513
ORF3a49G49GggCggT11B.1.1.1920.002309
ORF3a49G49GggCggT11B.1.1.1980.001468
ORF3a49G49GggCggT11B.1.1.2140.000055
ORF3a49G49DgGcgAc11B.1.1.2370.005405
ORF3a49G49VgGcgTc11B.1.1.250.000569
ORF3a49G49VgGcgTc11B.1.1.280.000311
ORF3a49G49CGgcTgc11B.1.1.2860.002899
ORF3a49G49SGgcAgc11B.1.1.3060.000438
ORF3a49G49NGGCAAT11B.1.1.3060.000438
ORF3a49G49CGgcTgc11B.1.1.3260.001761
ORF3a49G49DgGcgAc11B.1.1.330.000421
ORF3a49G49GggCggT11B.1.1.3440.010753
ORF3a49G49CGgcTgc11B.1.1.3450.043478
ORF3a49G49VgGcgTc11B.1.1.3490.010309
ORF3a49G49VgGcgTc11B.1.1.370.000193
ORF3a49G49DgGcgAc11B.1.1.390.00051
ORF3a49G49CGgcTgc11B.1.1.3980.003226
ORF3a49G49delGGC---11B.1.1.4090.002833
ORF3a49G49GggCggT11B.1.1.4160.000905
ORF3a49G49CGgcTgc11B.1.1.4200.001006
ORF3a49G49GggCggT11B.1.1.4320.001266
ORF3a49G49VgGcgTc11B.1.1.4340.000349
ORF3a49G49VgGcgTc11B.1.1.460.004367
ORF3a49G49delGGC---11B.1.1.500.000679
ORF3a49G49GggCggT11B.1.1.500.000679
ORF3a49G49CGgcTgc11B.1.1.510.001718
ORF3a49G49CGgcTgc11B.1.1.5120.028571
ORF3a49G49CGgcTgc11B.1.1.5190.00004
ORF3a49G49VgGcgTc11B.1.1.520.012195
ORF3a49G49CGgcTgc11B.1.1.5250.005464
ORF3a49G49del1Ggc-gc11B.1.1.70.000001
ORF3a49G49SGgcAgc11B.1.1.700.000341
ORF3a49G49IGGcATc11B.1.1.80.003584
ORF3a49G49DgGcgAc11B.1.1600.000031
ORF3a49G49GggCggT11B.1.1600.000031
ORF3a49G49RGgcCgc11B.1.160.120.00641
ORF3a49G49CGgcTgc11B.1.160.210.020408
ORF3a49G49delGGC---11B.1.160.240.004425
ORF3a49G49delGGC---11B.1.160.330.004425
ORF3a49G49GggCggT11B.1.1640.014925
ORF3a49G49VgGcgTc11B.1.1690.014925
ORF3a49G49SGgcAgc11B.1.1730.026316
ORF3a49G49AgGcgCc11B.1.1770.000013
ORF3a49G49CGgcTgc11B.1.1770.000013
ORF3a49G49SGgcAgc11B.1.1770.000013
ORF3a49G49GggCggT11B.1.177.170.000821
ORF3a49G49GggCggT11B.1.177.200.001517
ORF3a49G49GggCggT11B.1.177.210.000076
ORF3a49G49VgGcgTc11B.1.177.230.003236
ORF3a49G49DgGcgAc11B.1.177.570.000281
ORF3a49G49delGGC---11B.1.177.60.000977
ORF3a49G49SGgcAgc11B.1.177.70.000165
ORF3a49G49GggCggT11B.1.177.730.000566
ORF3a49G49GggCggT11B.1.177.860.000183
ORF3a49G49VgGcgTc11B.1.177.870.000728
ORF3a49G49SGgcAgc11B.1.1790.003759
ORF3a49G49IGGcATc11B.1.1880.016667
ORF3a49G49DgGcgAc11B.1.20.000009
ORF3a49G49VgGcgTc11B.1.2100.002132
ORF3a49G49SGgcAgc11B.1.2150.009615
ORF3a49G49delGGC---11B.1.221.10.002907
ORF3a49G49DgGcgAc11B.1.2340.000132
ORF3a49G49DgGcgAc11B.1.2410.000812
ORF3a49G49VgGcgTc11B.1.243.10.022222
ORF3a49G49SGgcAgc11B.1.2580.000067
ORF3a49G49VgGcgTc11B.1.2580.000067
ORF3a49G49GggCggT11B.1.2580.000067
ORF3a49G49GggCggT11B.1.258.170.000104
ORF3a49G49GggCggT11B.1.258.20.004505
ORF3a49G49CGgcTgc11B.1.2650.001271
ORF3a49G49IGGcATc11B.1.3510.00003
ORF3a49G49GggCggT11B.1.351.30.000876
ORF3a49G49GggCggT11B.1.360.000146
ORF3a49G49VgGcgTc11B.1.360.000146
ORF3a49G49VgGcgTc11B.1.36.10.00114
ORF3a49G49VgGcgTc11B.1.36.250.002208
ORF3a49G49SGgcAgc11B.1.36.80.001
ORF3a49G49GggCggT11B.1.3670.000792
ORF3a49G49VgGcgTc11B.1.3670.000792
ORF3a49G49SGgcAgc11B.1.3690.000285
ORF3a49G49GggCggT11B.1.3690.000285
ORF3a49G49VgGcgTc11B.1.3980.002976
ORF3a49G49VgGcgTc11B.1.4000.000429
ORF3a49G49CGgcTgc11B.1.4000.000429
ORF3a49G49GggCggT11B.1.4080.00369
ORF3a49G49VgGcgTc11B.1.416.10.001563
ORF3a49G49delGGC---11B.1.4220.000812
ORF3a49G49DgGcgAc11B.1.4290.000024
ORF3a49G49SGgcAgc11B.1.4290.000024
ORF3a49G49CGgcTgc11B.1.4290.000024
ORF3a49G49VgGcgTc11B.1.438.10.000107
ORF3a49G49CGgcTgc11B.1.4520.013699
ORF3a49G49VgGcgTc11B.1.4590.004082
ORF3a49G49VgGcgTc11B.1.466.20.000391
ORF3a49G49VgGcgTc11B.1.4680.005714
ORF3a49G49AgGcgCc11B.1.5250.000113
ORF3a49G49CGgcTgc11B.1.5250.000113
ORF3a49G49SGgcAgc11B.1.5260.000024
ORF3a49G49DgGcgAc11B.1.5260.000024
ORF3a49G49DgGcgAc11B.1.5440.006024
ORF3a49G49VgGcgTc11B.1.5620.018519
ORF3a49G49VgGcgTc11B.1.5740.002151
ORF3a49G49IGGcATc11B.1.5740.002151
ORF3a49G49VgGcgTc11B.1.5750.000303
ORF3a49G49VgGcgTc11B.1.5770.000687
ORF3a49G49CGgcTgc11B.1.5900.004545
ORF3a49G49VgGcgTc11B.1.5970.00463
ORF3a49G49IGGcATc11B.1.617.20.000004
ORF3a49G49AgGcgCc11B.1.617.20.000004
ORF3a49G49VgGcgTc11B.1.6190.000871
ORF3a49G49GggCggA11B.1.6190.000871
ORF3a49G49GggCggT11B.1.6210.000089
ORF3a49G49SGgcAgc11B.1.6210.000089
ORF3a49G49VgGcgTc11B.1.6290.013333
ORF3a49G49GggCggG11B.1.6360.006711
ORF3a49G49GggCggA11B.1.6370.000073
ORF3a49G49SGgcAgc11B.1.6370.000073
ORF3a49G49delGGC---11B.1.6380.052632
ORF3a49G49VgGcgTc11B.1.6390.021739
ORF3a49G49SGgcAgc11B.1.9.50.005682
ORF3a49G49GggCggT11B.40.002208
ORF3a49G49AgGcgCc11C.160.00106
ORF3a49G49CGgcTgc11C.160.00106
ORF3a49G49GggCggT11C.36.30.000567
ORF3a49G49CGgcTgc11C.370.000116
ORF3a49G49delGGC---11D.20.000075
ORF3a49G49GggCggT11D.20.000075
ORF3a49G49RGgcCgc11D.20.000075
ORF3a49G49VgGcgTc11N.90.005952
ORF3a49G49GggCggA11P.1.120.000484
ORF3a49G49VgGcgTc11P.1.120.000484
ORF3a49G49VgGcgTc11P.1.140.000048
ORF3a49G49DgGcgAc11P.1.140.000048
ORF3a49G49delGGC---11P.1.150.000232
ORF3a49G49CGgcTgc11P.1.20.001156
ORF3a49G49VgGcgTc11P.1.70.000319
ORF3a49G49CGgcTgc11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.