CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 46 | L46F | nonsyn | Ctt | Ttt | 2420 | 2420 | 1 | 25528-25530 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 46 | L46F | Ctt | Ttt | 2420 | 2420 | All | 0.000463 |
ORF3a | 46 | L46F | Ctt | Ttt | 552 | 552 | B.1.1.326 | 0.971831 |
ORF3a | 46 | L46F | Ctt | Ttt | 317 | 317 | B.1.2 | 0.002791 |
ORF3a | 46 | L46F | Ctt | Ttt | 277 | 277 | B.1.1.8 | 0.992832 |
ORF3a | 46 | L46F | Ctt | Ttt | 134 | 134 | B.1.617.2 | 0.000505 |
ORF3a | 46 | L46F | Ctt | Ttt | 130 | 130 | B.1.1.7 | 0.000116 |
ORF3a | 46 | L46F | Ctt | Ttt | 96 | 96 | AY.44 | 0.000584 |
ORF3a | 46 | L46F | Ctt | Ttt | 82 | 82 | AY.25 | 0.000493 |
ORF3a | 46 | L46F | Ctt | Ttt | 79 | 79 | AY.4 | 0.000123 |
ORF3a | 46 | L46F | Ctt | Ttt | 77 | 77 | B.1.1.519 | 0.003058 |
ORF3a | 46 | L46F | Ctt | Ttt | 50 | 50 | AY.102 | 0.001326 |
ORF3a | 46 | L46F | Ctt | Ttt | 48 | 48 | B.1.429 | 0.001129 |
ORF3a | 46 | L46F | Ctt | Ttt | 45 | 45 | P.1 | 0.000709 |
ORF3a | 46 | L46F | Ctt | Ttt | 39 | 39 | B.1.1.93 | 1 |
ORF3a | 46 | L46F | Ctt | Ttt | 39 | 39 | B.1.537 | 0.78 |
ORF3a | 46 | L46F | Ctt | Ttt | 38 | 38 | AY.43 | 0.000168 |
ORF3a | 46 | L46F | Ctt | Ttt | 35 | 35 | AY.119 | 0.001236 |
ORF3a | 46 | L46F | Ctt | Ttt | 33 | 33 | B.1.525 | 0.003734 |
ORF3a | 46 | L46F | Ctt | Ttt | 26 | 26 | B.1 | 0.000238 |
ORF3a | 46 | L46F | Ctt | Ttt | 25 | 25 | AY.3.1 | 0.002131 |
ORF3a | 46 | L46F | Ctt | Ttt | 20 | 20 | B.1.595 | 0.005219 |
ORF3a | 46 | L46F | Ctt | Ttt | 18 | 18 | AY.100 | 0.000828 |
ORF3a | 46 | L46F | Ctt | Ttt | 18 | 18 | AY.5 | 0.000372 |
ORF3a | 46 | L46F | Ctt | Ttt | 16 | 16 | AY.26 | 0.000453 |
ORF3a | 46 | L46F | Ctt | Ttt | 15 | 15 | AY.3 | 0.000149 |
ORF3a | 46 | L46F | Ctt | Ttt | 15 | 15 | AY.39 | 0.000371 |
ORF3a | 46 | L46F | Ctt | Ttt | 14 | 14 | AY.120 | 0.000521 |
ORF3a | 46 | L46F | Ctt | Ttt | 13 | 13 | AY.24 | 0.005603 |
ORF3a | 46 | L46F | Ctt | Ttt | 10 | 10 | B.1.1 | 0.000181 |
ORF3a | 46 | L46F | Ctt | Ttt | 9 | 9 | B.1.177 | 0.000119 |
ORF3a | 46 | L46F | Ctt | Ttt | 7 | 7 | AY.103 | 0.000043 |
ORF3a | 46 | L46F | Ctt | Ttt | 7 | 7 | B.1.596 | 0.00061 |
ORF3a | 46 | L46F | Ctt | Ttt | 5 | 5 | B.1.438.1 | 0.000536 |
ORF3a | 46 | L46F | Ctt | Ttt | 4 | 4 | B.1.206 | 0.003263 |
ORF3a | 46 | L46F | Ctt | Ttt | 4 | 4 | B.1.340 | 0.017167 |
ORF3a | 46 | L46F | Ctt | Ttt | 4 | 4 | B.1.36.8 | 0.004 |
ORF3a | 46 | L46F | Ctt | Ttt | 4 | 4 | B.1.526 | 0.000094 |
ORF3a | 46 | L46F | Ctt | Ttt | 4 | 4 | B.1.617.1 | 0.000516 |
ORF3a | 46 | L46F | Ctt | Ttt | 3 | 3 | AY.110 | 0.000338 |
ORF3a | 46 | L46F | Ctt | Ttt | 3 | 3 | AY.13 | 0.000483 |
ORF3a | 46 | L46F | Ctt | Ttt | 3 | 3 | AY.42 | 0.000121 |
ORF3a | 46 | L46F | Ctt | Ttt | 3 | 3 | B.1.1.222 | 0.000612 |
ORF3a | 46 | L46F | Ctt | Ttt | 3 | 3 | B.1.177.2 | 0.013636 |
ORF3a | 46 | L46F | Ctt | Ttt | 3 | 3 | B.1.234 | 0.000396 |
ORF3a | 46 | L46F | Ctt | Ttt | 3 | 3 | B.1.427 | 0.000151 |
ORF3a | 46 | L46F | Ctt | Ttt | 3 | 3 | B.1.621 | 0.000266 |
ORF3a | 46 | L46F | Ctt | Ttt | 3 | 3 | Q.3 | 0.000435 |
ORF3a | 46 | L46F | Ctt | Ttt | 2 | 2 | AY.14 | 0.000176 |
ORF3a | 46 | L46F | Ctt | Ttt | 2 | 2 | AY.29 | 0.000032 |
ORF3a | 46 | L46F | Ctt | Ttt | 2 | 2 | AY.34 | 0.000194 |
ORF3a | 46 | L46F | Ctt | Ttt | 2 | 2 | AY.38 | 0.000999 |
ORF3a | 46 | L46F | Ctt | Ttt | 2 | 2 | AY.45 | 0.000243 |
ORF3a | 46 | L46F | Ctt | Ttt | 2 | 2 | AY.46.5 | 0.000397 |
ORF3a | 46 | L46F | Ctt | Ttt | 2 | 2 | AY.73 | 0.001331 |
ORF3a | 46 | L46F | Ctt | Ttt | 2 | 2 | AY.75 | 0.000112 |
ORF3a | 46 | L46F | Ctt | Ttt | 2 | 2 | AY.9.2 | 0.000073 |
ORF3a | 46 | L46F | Ctt | Ttt | 2 | 2 | AY.93 | 0.000546 |
ORF3a | 46 | L46F | Ctt | Ttt | 2 | 2 | AY.98.1 | 0.000097 |
ORF3a | 46 | L46F | Ctt | Ttt | 2 | 2 | B.1.160 | 0.000062 |
ORF3a | 46 | L46F | Ctt | Ttt | 2 | 2 | B.1.521 | 0.00995 |
ORF3a | 46 | L46F | Ctt | Ttt | 2 | 2 | B.1.581 | 0.018868 |
ORF3a | 46 | L46F | Ctt | Ttt | 2 | 2 | B.1.609 | 0.000959 |
ORF3a | 46 | L46F | Ctt | Ttt | 2 | 2 | D.2 | 0.00015 |
ORF3a | 46 | L46F | Ctt | Ttt | 2 | 2 | P.1.14 | 0.000096 |
ORF3a | 46 | L46F | Ctt | Ttt | 2 | 2 | Q.7 | 0.002222 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | AY.1 | 0.000396 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | AY.23.1 | 0.000417 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | AY.28 | 0.00189 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | AY.46.2 | 0.000635 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | AY.65 | 0.000533 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | AY.69 | 0.000187 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | AY.74 | 0.000116 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | AY.79 | 0.001211 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | AY.82 | 0.001357 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | B.1.1.240 | 0.004695 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | B.1.1.265 | 0.003155 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | B.1.1.464 | 0.001473 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | B.1.1.50 | 0.000679 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | B.1.139 | 0.000733 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | B.1.160.17 | 0.001701 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | B.1.160.18 | 0.007299 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | B.1.177.42 | 0.000894 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | B.1.177.57 | 0.000281 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | B.1.311 | 0.000275 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | B.1.36 | 0.000146 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | B.1.391 | 0.001127 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | B.1.409 | 0.000781 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | B.1.462 | 0.007246 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | B.1.546 | 0.003704 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | B.1.564 | 0.000426 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | B.1.573 | 0.006098 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | B.1.637 | 0.000073 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | C.33 | 0.058824 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | N.5 | 0.001767 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | P.1.10 | 0.000269 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | P.1.12 | 0.000484 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | P.1.7 | 0.000319 |
ORF3a | 46 | L46F | Ctt | Ttt | 1 | 1 | Q.4 | 0.000455 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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