CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 46

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a46L46FnonsynCttTtt24202420125528-25530
ORF3a46L46deldelCTT---871871125528-25530
ORF3a46L46InonsynCttAtt3283270.99695125528-25530
ORF3a46L46InonsynCtTAtA32810.0030487825528-25530
ORF3a46L46LsynctTctC2282070.90789525528-25530
ORF3a46L46LsynctTctA228160.070175425528-25530
ORF3a46L46LsynctTctG22850.021929825528-25530
ORF3a46L46VnonsynCttGtt9494125528-25530
ORF3a46L46PnonsyncTtcCt65630.96923125528-25530
ORF3a46L46PnonsyncTTcCC6520.030769225528-25530
ORF3a46L46HnonsyncTtcAt5353125528-25530
ORF3a46L46RnonsyncTtcGt1414125528-25530
ORF3a46L46CnonsynCTtTGt1212125528-25530
ORF3a46L46del1delCtT-tA1040.425528-25530
ORF3a46L46del1delcTTc-N1020.225528-25530
ORF3a46L46del1delcTtc-t1020.225528-25530
ORF3a46L46del1delCTT-NN1010.125528-25530
ORF3a46L46del1delCtTTt-1010.125528-25530
ORF3a46L46del2delcTTc--620.33333325528-25530
ORF3a46L46del2delCTt--t620.33333325528-25530
ORF3a46L46del2delCTT--A610.16666725528-25530
ORF3a46L46del2delCTT--N610.16666725528-25530
ORF3a46L46NnonsynCTtAAt22125528-25530
ORF3a46L46YnonsynCTtTAt22125528-25530

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a46L46FCttTtt24202420All0.000463
ORF3a46L46delCTT---871871All0.000167
ORF3a46L46FCttTtt552552B.1.1.3260.971831
ORF3a46L46ICttAtt327328All0.000063
ORF3a46L46ICtTAtA1328All0
ORF3a46L46FCttTtt317317B.1.20.002791
ORF3a46L46FCttTtt277277B.1.1.80.992832
ORF3a46L46LctTctC207228All0.00004
ORF3a46L46LctTctA16228All0.000003
ORF3a46L46LctTctG5228All0.000001
ORF3a46L46delCTT---187187AY.260.005294
ORF3a46L46ICttAtt171171B.1.1.3970.385135
ORF3a46L46LctTctC139153B.1.1.70.000124
ORF3a46L46LctTctA12153B.1.1.70.000011
ORF3a46L46LctTctG2153B.1.1.70.000002
ORF3a46L46delCTT---153153B.1.6300.801047
ORF3a46L46FCttTtt134134B.1.617.20.000505
ORF3a46L46FCttTtt130130B.1.1.70.000116
ORF3a46L46FCttTtt9696AY.440.000584
ORF3a46L46VCttGtt9494All0.000018
ORF3a46L46ICttAtt8888AY.40.000137
ORF3a46L46FCttTtt8282AY.250.000493
ORF3a46L46FCttTtt7979AY.40.000123
ORF3a46L46delCTT---7878AY.750.00437
ORF3a46L46VCttGtt7777B.1.1.1760.033831
ORF3a46L46FCttTtt7777B.1.1.5190.003058
ORF3a46L46PcTtcCt6365All0.000012
ORF3a46L46PcTTcCC265All0
ORF3a46L46HcTtcAt5353All0.00001
ORF3a46L46FCttTtt5050AY.1020.001326
ORF3a46L46FCttTtt4848B.1.4290.001129
ORF3a46L46FCttTtt4545P.10.000709
ORF3a46L46delCTT---3939AY.40.000061
ORF3a46L46FCttTtt3939B.1.1.931
ORF3a46L46FCttTtt3939B.1.5370.78
ORF3a46L46FCttTtt3838AY.430.000168
ORF3a46L46delCTT---3838B.1.1.70.000034
ORF3a46L46HcTtcAt3737AY.30.000368
ORF3a46L46delCTT---3636B.1.1770.000474
ORF3a46L46FCttTtt3535AY.1190.001236
ORF3a46L46delCTT---3535AY.430.000155
ORF3a46L46FCttTtt3333B.1.5250.003734
ORF3a46L46delCTT---2929AY.250.000174
ORF3a46L46FCttTtt2626B.10.000238
ORF3a46L46FCttTtt2525AY.3.10.002131
ORF3a46L46delCTT---2323B.1.10.000417
ORF3a46L46delCTT---2020B.1.5260.00047
ORF3a46L46FCttTtt2020B.1.5950.005219
ORF3a46L46FCttTtt1818AY.1000.000828
ORF3a46L46FCttTtt1818AY.50.000372
ORF3a46L46delCTT---1717AY.30.000169
ORF3a46L46FCttTtt1616AY.260.000453
ORF3a46L46ICttAtt1616AY.4.50.00172
ORF3a46L46FCttTtt1515AY.30.000149
ORF3a46L46FCttTtt1515AY.390.000371
ORF3a46L46delCTT---1515B.1.617.20.000056
ORF3a46L46RcTtcGt1414All0.000003
ORF3a46L46FCttTtt1414AY.1200.000521
ORF3a46L46FCttTtt1313AY.240.005603
ORF3a46L46PcTtcCt1313B.1.1.70.000012
ORF3a46L46CCTtTGt1212All0.000002
ORF3a46L46PcTtcCt1212B.1.1.4060.077922
ORF3a46L46VCttGtt1212B.1.3690.003423
ORF3a46L46del1CtT-tA410All0.000001
ORF3a46L46del1cTtc-t210All0
ORF3a46L46del1cTTc-N210All0
ORF3a46L46del1CTT-NN110All0
ORF3a46L46del1CtTTt-110All0
ORF3a46L46delCTT---1010AY.1030.000062
ORF3a46L46delCTT---1010AY.440.000061
ORF3a46L46FCttTtt1010B.1.10.000181
ORF3a46L46LctTctC79AY.40.000011
ORF3a46L46LctTctA19AY.40.000002
ORF3a46L46LctTctG19AY.40.000002
ORF3a46L46delCTT---99B.1.1.2740.045455
ORF3a46L46FCttTtt99B.1.1770.000119
ORF3a46L46delCTT---99B.1.2580.000599
ORF3a46L46delCTT---88AY.390.000198
ORF3a46L46FCttTtt77AY.1030.000043
ORF3a46L46LctTctC77AY.430.000031
ORF3a46L46FCttTtt77B.1.5960.00061
ORF3a46L46del2CTt--t26All0
ORF3a46L46del2cTTc--26All0
ORF3a46L46del2CTT--A16All0
ORF3a46L46del2CTT--N16All0
ORF3a46L46delCTT---66AY.50.000124
ORF3a46L46delCTT---66B.10.000055
ORF3a46L46LctTctC46B.10.000037
ORF3a46L46LctTctA16B.10.000009
ORF3a46L46LctTctG16B.10.000009
ORF3a46L46delCTT---66B.1.1600.000187
ORF3a46L46HcTtcAt66B.1.258.170.000624
ORF3a46L46PcTtcCt55AY.1030.000031
ORF3a46L46del1CtT-tA45AY.260.000113
ORF3a46L46del1CTT-NN15AY.260.000028
ORF3a46L46ICttAtt55B.10.000046
ORF3a46L46PcTtcCt45B.1.1770.000053
ORF3a46L46PcTTcCC15B.1.1770.000013
ORF3a46L46LctTctC55B.1.2400.001078
ORF3a46L46delCTT---55B.1.438.10.000536
ORF3a46L46FCttTtt55B.1.438.10.000536
ORF3a46L46LctTctC44AY.260.000113
ORF3a46L46PcTtcCt44AY.40.000006
ORF3a46L46delCTT---44AY.4.50.00043
ORF3a46L46LctTctC44AY.46.60.000289
ORF3a46L46ICttAtt44AY.80.002424
ORF3a46L46ICttAtt44AY.90.00027
ORF3a46L46delCTT---44AY.9.10.000335
ORF3a46L46PcTtcCt44B.10.000037
ORF3a46L46ICttAtt44B.1.1.5190.000159
ORF3a46L46ICttAtt44B.1.1.70.000004
ORF3a46L46FCttTtt44B.1.2060.003263
ORF3a46L46PcTtcCt34B.1.2210.000213
ORF3a46L46PcTTcCC14B.1.2210.000071
ORF3a46L46FCttTtt44B.1.3400.017167
ORF3a46L46FCttTtt44B.1.36.80.004
ORF3a46L46FCttTtt44B.1.5260.000094
ORF3a46L46FCttTtt44B.1.617.10.000516
ORF3a46L46LctTctC44B.1.617.20.000015
ORF3a46L46delCTT---44P.1.90.019231
ORF3a46L46FCttTtt33AY.1100.000338
ORF3a46L46ICttAtt33AY.130.000483
ORF3a46L46FCttTtt33AY.130.000483
ORF3a46L46delCTT---33AY.39.10.000119
ORF3a46L46delCTT---33AY.4.20.000065
ORF3a46L46LctTctC33AY.420.000121
ORF3a46L46FCttTtt33AY.420.000121
ORF3a46L46delCTT---33AY.450.000365
ORF3a46L46ICttAtt33AY.690.00056
ORF3a46L46delCTT---33AY.740.000347
ORF3a46L46PcTtcCt33AY.9.20.00011
ORF3a46L46delCTT---33AY.980.000237
ORF3a46L46LctTctC33B.1.10.000054
ORF3a46L46FCttTtt33B.1.1.2220.000612
ORF3a46L46delCTT---33B.1.160.240.013274
ORF3a46L46FCttTtt33B.1.177.20.013636
ORF3a46L46FCttTtt33B.1.2340.000396
ORF3a46L46delCTT---33B.1.36.170.001482
ORF3a46L46FCttTtt33B.1.4270.000151
ORF3a46L46ICttAtt33B.1.617.20.000011
ORF3a46L46FCttTtt33B.1.6210.000266
ORF3a46L46delCTT---33B.1.6370.000219
ORF3a46L46LctTctC33P.10.000047
ORF3a46L46FCttTtt33Q.30.000435
ORF3a46L46delCTT---33U.30.011583
ORF3a46L46HcTtcAt220.111111
ORF3a46L46NCTtAAt220.111111
ORF3a46L46YCTtTAt220.111111
ORF3a46L46ICttAtt220.111111
ORF3a46L46YCTtTAt22All0
ORF3a46L46NCTtAAt22All0
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ORF3a46L46LctTctC22AY.1030.000012
ORF3a46L46HcTtcAt22AY.1030.000012
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ORF3a46L46delCTT---22AY.1180.000125
ORF3a46L46delCTT---22AY.1190.000071
ORF3a46L46delCTT---22AY.1200.000074
ORF3a46L46FCttTtt22AY.140.000176
ORF3a46L46PcTtcCt22AY.200.000078
ORF3a46L46PcTtcCt22AY.250.000012
ORF3a46L46LctTctC22AY.250.000012
ORF3a46L46delCTT---22AY.290.000032
ORF3a46L46FCttTtt22AY.290.000032
ORF3a46L46delCTT---22AY.330.000134
ORF3a46L46FCttTtt22AY.340.000194
ORF3a46L46delCTT---22AY.340.000194
ORF3a46L46FCttTtt22AY.380.000999
ORF3a46L46del2cTTc--12AY.40.000002
ORF3a46L46del2CTt--t12AY.40.000002
ORF3a46L46VCttGtt22AY.430.000009
ORF3a46L46FCttTtt22AY.450.000243
ORF3a46L46delCTT---22AY.46.20.001271
ORF3a46L46FCttTtt22AY.46.50.000397
ORF3a46L46delCTT---22AY.540.000191
ORF3a46L46delCTT---22AY.60.000082
ORF3a46L46delCTT---22AY.670.000929
ORF3a46L46FCttTtt22AY.730.001331
ORF3a46L46FCttTtt22AY.750.000112
ORF3a46L46delCTT---22AY.810.003984
ORF3a46L46LctTctC22AY.850.000854
ORF3a46L46FCttTtt22AY.9.20.000073
ORF3a46L46FCttTtt22AY.930.000546
ORF3a46L46FCttTtt22AY.98.10.000097
ORF3a46L46CCTtTGt22B.10.000018
ORF3a46L46RcTtcGt22B.10.000018
ORF3a46L46ICttAtt22B.1.1.1290.018349
ORF3a46L46CCTtTGt22B.1.1.2910.001485
ORF3a46L46RcTtcGt22B.1.1.2910.001485
ORF3a46L46ICttAtt22B.1.1.4370.020833
ORF3a46L46delCTT---22B.1.1.4640.002946
ORF3a46L46delCTT---22B.1.1.5190.000079
ORF3a46L46HcTtcAt22B.1.1.70.000002
ORF3a46L46FCttTtt22B.1.1600.000062
ORF3a46L46delCTT---22B.1.160.330.00885
ORF3a46L46CCTtTGt22B.1.1690.029851
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ORF3a46L46delCTT---22B.1.36.380.003284
ORF3a46L46delCTT---22B.1.4270.000101
ORF3a46L46delCTT---22B.1.4290.000047
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ORF3a46L46FCttTtt22B.1.5810.018868
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ORF3a46L46PcTtcCt11B.1.1.700.000341
ORF3a46L46CCTtTGt11B.1.1.80.003584
ORF3a46L46PcTtcCt11B.1.1270.002198
ORF3a46L46FCttTtt11B.1.1390.000733
ORF3a46L46FCttTtt11B.1.160.170.001701
ORF3a46L46FCttTtt11B.1.160.180.007299
ORF3a46L46RcTtcGt11B.1.1770.000013
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ORF3a46L46FCttTtt11B.1.2580.000067
ORF3a46L46PcTtcCt11B.1.2580.000067
ORF3a46L46ICttAtt11B.1.3020.013333
ORF3a46L46FCttTtt11B.1.3110.000275
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ORF3a46L46FCttTtt11B.1.3510.00003
ORF3a46L46FCttTtt11B.1.360.000146
ORF3a46L46delCTT---11B.1.36.240.006173
ORF3a46L46FCttTtt11B.1.36.290.000517
ORF3a46L46FCttTtt11B.1.3910.001127
ORF3a46L46FCttTtt11B.1.4090.000781
ORF3a46L46HcTtcAt11B.1.4270.00005
ORF3a46L46LctTctC11B.1.4290.000024
ORF3a46L46RcTtcGt11B.1.4460.02
ORF3a46L46FCttTtt11B.1.4620.007246
ORF3a46L46ICttAtt11B.1.5090.000866
ORF3a46L46FCttTtt11B.1.5460.003704
ORF3a46L46FCttTtt11B.1.5640.000426
ORF3a46L46FCttTtt11B.1.5730.006098
ORF3a46L46RcTtcGt11B.1.5740.002151
ORF3a46L46RcTtcGt11B.1.5760.000907
ORF3a46L46LctTctC11B.1.5950.000261
ORF3a46L46delCTT---11B.1.5960.000087
ORF3a46L46HcTtcAt11B.1.617.20.000004
ORF3a46L46VCttGtt11B.1.617.20.000004
ORF3a46L46PcTtcCt11B.1.617.20.000004
ORF3a46L46ICtTAtA11B.1.6300.005236
ORF3a46L46FCttTtt11B.1.6370.000073
ORF3a46L46delCTT---11B.1.6380.052632
ORF3a46L46PcTtcCt11B.550.00295
ORF3a46L46FCttTtt11C.330.058824
ORF3a46L46FCttTtt11N.50.001767
ORF3a46L46PcTtcCt11P.10.000016
ORF3a46L46ICttAtt11P.1.10.000318
ORF3a46L46VCttGtt11P.1.10.000318
ORF3a46L46FCttTtt11P.1.100.000269
ORF3a46L46FCttTtt11P.1.120.000484
ORF3a46L46LctTctC11P.1.120.000484
ORF3a46L46delCTT---11P.1.140.000048
ORF3a46L46delCTT---11P.1.150.000232
ORF3a46L46PcTtcCt11P.1.170.000162
ORF3a46L46FCttTtt11P.1.70.000319
ORF3a46L46FCttTtt11Q.40.000455