CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 44 | G44V | nonsyn | gGa | gTa | 1438 | 1438 | 1 | 25522-25524 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 44 | G44V | gGa | gTa | 1438 | 1438 | All | 0.000275 |
ORF3a | 44 | G44V | gGa | gTa | 215 | 215 | B.1.426 | 0.216953 |
ORF3a | 44 | G44V | gGa | gTa | 126 | 126 | B.1.1.7 | 0.000113 |
ORF3a | 44 | G44V | gGa | gTa | 115 | 115 | B.1.2 | 0.001013 |
ORF3a | 44 | G44V | gGa | gTa | 100 | 100 | AY.5 | 0.002065 |
ORF3a | 44 | G44V | gGa | gTa | 71 | 71 | AY.103 | 0.000441 |
ORF3a | 44 | G44V | gGa | gTa | 70 | 70 | AY.4 | 0.000109 |
ORF3a | 44 | G44V | gGa | gTa | 58 | 58 | B.1.617.2 | 0.000218 |
ORF3a | 44 | G44V | gGa | gTa | 31 | 31 | AY.43 | 0.000137 |
ORF3a | 44 | G44V | gGa | gTa | 31 | 31 | B.1.38 | 1 |
ORF3a | 44 | G44V | gGa | gTa | 30 | 30 | P.1.14 | 0.001434 |
ORF3a | 44 | G44V | gGa | gTa | 29 | 29 | AY.102 | 0.000769 |
ORF3a | 44 | G44V | gGa | gTa | 29 | 29 | B.1 | 0.000266 |
ORF3a | 44 | G44V | gGa | gTa | 29 | 29 | P.1 | 0.000457 |
ORF3a | 44 | G44V | gGa | gTa | 27 | 27 | B.1.115 | 0.586957 |
ORF3a | 44 | G44V | gGa | gTa | 24 | 24 | AY.1 | 0.009497 |
ORF3a | 44 | G44V | gGa | gTa | 24 | 24 | AY.44 | 0.000146 |
ORF3a | 44 | G44V | gGa | gTa | 23 | 23 | AY.3 | 0.000229 |
ORF3a | 44 | G44V | gGa | gTa | 17 | 17 | AY.29 | 0.000268 |
ORF3a | 44 | G44V | gGa | gTa | 16 | 16 | B.1.497 | 0.005036 |
ORF3a | 44 | G44V | gGa | gTa | 14 | 14 | B.1.1 | 0.000254 |
ORF3a | 44 | G44V | gGa | gTa | 14 | 14 | B.1.1.253 | 0.035088 |
ORF3a | 44 | G44V | gGa | gTa | 13 | 13 | AY.25 | 0.000078 |
ORF3a | 44 | G44V | gGa | gTa | 12 | 12 | B.1.160 | 0.000374 |
ORF3a | 44 | G44V | gGa | gTa | 11 | 11 | B.1.1.519 | 0.000437 |
ORF3a | 44 | G44V | gGa | gTa | 11 | 11 | B.1.177 | 0.000145 |
ORF3a | 44 | G44V | gGa | gTa | 10 | 10 | AY.34 | 0.00097 |
ORF3a | 44 | G44V | gGa | gTa | 10 | 10 | B.1.221 | 0.00071 |
ORF3a | 44 | G44V | gGa | gTa | 9 | 9 | AY.114 | 0.00208 |
ORF3a | 44 | G44V | gGa | gTa | 9 | 9 | B.1.1.214 | 0.000499 |
ORF3a | 44 | G44V | gGa | gTa | 8 | 8 | AY.46 | 0.000833 |
ORF3a | 44 | G44V | gGa | gTa | 7 | 7 | AY.4.2 | 0.000152 |
ORF3a | 44 | G44V | gGa | gTa | 7 | 7 | AY.99 | 0.007345 |
ORF3a | 44 | G44V | gGa | gTa | 7 | 7 | B.1.1.311 | 0.002507 |
ORF3a | 44 | G44V | gGa | gTa | 7 | 7 | B.1.525 | 0.000792 |
ORF3a | 44 | G44V | gGa | gTa | 6 | 6 | AY.121 | 0.000812 |
ORF3a | 44 | G44V | gGa | gTa | 6 | 6 | AY.46.6 | 0.000433 |
ORF3a | 44 | G44V | gGa | gTa | 6 | 6 | AY.74 | 0.000694 |
ORF3a | 44 | G44V | gGa | gTa | 6 | 6 | B.1.1.209 | 0.053571 |
ORF3a | 44 | G44V | gGa | gTa | 6 | 6 | B.1.1.39 | 0.003058 |
ORF3a | 44 | G44V | gGa | gTa | 6 | 6 | B.1.110.3 | 0.00431 |
ORF3a | 44 | G44V | gGa | gTa | 5 | 5 | AY.100 | 0.00023 |
ORF3a | 44 | G44V | gGa | gTa | 5 | 5 | AY.119 | 0.000177 |
ORF3a | 44 | G44V | gGa | gTa | 5 | 5 | AY.42 | 0.000201 |
ORF3a | 44 | G44V | gGa | gTa | 5 | 5 | B.1.1.284 | 0.000537 |
ORF3a | 44 | G44V | gGa | gTa | 5 | 5 | B.1.258 | 0.000333 |
ORF3a | 44 | G44V | gGa | gTa | 5 | 5 | B.1.416 | 0.006345 |
ORF3a | 44 | G44V | gGa | gTa | 4 | 4 | A.23.1 | 0.002817 |
ORF3a | 44 | G44V | gGa | gTa | 4 | 4 | AY.111 | 0.000733 |
ORF3a | 44 | G44V | gGa | gTa | 4 | 4 | AY.45 | 0.000487 |
ORF3a | 44 | G44V | gGa | gTa | 4 | 4 | AY.47 | 0.000124 |
ORF3a | 44 | G44V | gGa | gTa | 4 | 4 | AY.75 | 0.000224 |
ORF3a | 44 | G44V | gGa | gTa | 4 | 4 | AY.94 | 0.001771 |
ORF3a | 44 | G44V | gGa | gTa | 4 | 4 | AY.98.1 | 0.000194 |
ORF3a | 44 | G44V | gGa | gTa | 4 | 4 | B.1.627 | 0.008081 |
ORF3a | 44 | G44V | gGa | gTa | 4 | 4 | P.2 | 0.000747 |
ORF3a | 44 | G44V | gGa | gTa | 3 | 3 | AY.9.2 | 0.00011 |
ORF3a | 44 | G44V | gGa | gTa | 3 | 3 | B.1.177.81 | 0.000568 |
ORF3a | 44 | G44V | gGa | gTa | 3 | 3 | B.1.336 | 0.007317 |
ORF3a | 44 | G44V | gGa | gTa | 3 | 3 | B.1.427 | 0.000151 |
ORF3a | 44 | G44V | gGa | gTa | 3 | 3 | B.1.429 | 0.000071 |
ORF3a | 44 | G44V | gGa | gTa | 3 | 3 | B.1.438.1 | 0.000322 |
ORF3a | 44 | G44V | gGa | gTa | 3 | 3 | B.1.617.1 | 0.000387 |
ORF3a | 44 | G44V | gGa | gTa | 3 | 3 | P.1.10 | 0.000808 |
ORF3a | 44 | G44V | gGa | gTa | 2 | 2 | AY.109 | 0.001479 |
ORF3a | 44 | G44V | gGa | gTa | 2 | 2 | AY.118 | 0.000125 |
ORF3a | 44 | G44V | gGa | gTa | 2 | 2 | AY.12 | 0.000632 |
ORF3a | 44 | G44V | gGa | gTa | 2 | 2 | AY.14 | 0.000176 |
ORF3a | 44 | G44V | gGa | gTa | 2 | 2 | AY.26 | 0.000057 |
ORF3a | 44 | G44V | gGa | gTa | 2 | 2 | AY.5.4 | 0.000553 |
ORF3a | 44 | G44V | gGa | gTa | 2 | 2 | AY.70 | 0.000417 |
ORF3a | 44 | G44V | gGa | gTa | 2 | 2 | B.1.1.220 | 0.003717 |
ORF3a | 44 | G44V | gGa | gTa | 2 | 2 | B.1.1.420 | 0.002012 |
ORF3a | 44 | G44V | gGa | gTa | 2 | 2 | B.1.1.432 | 0.002532 |
ORF3a | 44 | G44V | gGa | gTa | 2 | 2 | B.1.1.50 | 0.001358 |
ORF3a | 44 | G44V | gGa | gTa | 2 | 2 | B.1.177.82 | 0.000955 |
ORF3a | 44 | G44V | gGa | gTa | 2 | 2 | B.1.243 | 0.000139 |
ORF3a | 44 | G44V | gGa | gTa | 2 | 2 | B.1.351 | 0.000059 |
ORF3a | 44 | G44V | gGa | gTa | 2 | 2 | B.1.36.8 | 0.002 |
ORF3a | 44 | G44V | gGa | gTa | 2 | 2 | B.1.568 | 0.002222 |
ORF3a | 44 | G44V | gGa | gTa | 2 | 2 | B.1.621 | 0.000177 |
ORF3a | 44 | G44V | gGa | gTa | 2 | 2 | B.1.623 | 0.001073 |
ORF3a | 44 | G44V | gGa | gTa | 2 | 2 | B.1.637 | 0.000146 |
ORF3a | 44 | G44V | gGa | gTa | 2 | 2 | D.2 | 0.00015 |
ORF3a | 44 | G44V | gGa | gTa | 2 | 2 | Q.8 | 0.00033 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | AY.10 | 0.00053 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | AY.107 | 0.000466 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | AY.110 | 0.000113 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | AY.16 | 0.00038 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | AY.2 | 0.000356 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | AY.27 | 0.000065 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | AY.34.1 | 0.00051 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | AY.36 | 0.000148 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | AY.7 | 0.000196 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | AY.8 | 0.000606 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | AY.9.1 | 0.000084 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | B.1.1.117 | 0.009709 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | B.1.1.141 | 0.002012 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | B.1.1.294 | 0.001266 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | B.1.1.301 | 0.001179 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | B.1.1.372 | 0.000689 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | B.1.1.396 | 0.045455 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | B.1.1.431 | 0.016129 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | B.1.1.448 | 0.002033 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | B.1.1.8 | 0.003584 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | B.1.139 | 0.000733 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | B.1.177.60 | 0.000218 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | B.1.177.73 | 0.000566 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | B.1.236 | 0.002053 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | B.1.279 | 0.000514 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | B.1.311 | 0.000275 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | B.1.326 | 0.007576 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | B.1.333 | 0.010526 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | B.1.36.17 | 0.000494 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | B.1.36.18 | 0.00042 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | B.1.36.29 | 0.000517 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | B.1.36.38 | 0.001642 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | B.1.362 | 0.001541 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | B.1.367 | 0.000792 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | B.1.399 | 0.001934 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | B.1.400 | 0.000429 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | B.1.425 | 0.002994 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | B.1.470 | 0.001404 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | B.1.505 | 0.004386 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | B.1.526 | 0.000024 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | B.1.567 | 0.003333 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | B.1.625 | 0.002353 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | B.1.9.5 | 0.005682 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | B.61 | 0.005747 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | C.37 | 0.000116 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | P.1.10.1 | 0.00813 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | P.1.17 | 0.000162 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | Q.1 | 0.000126 |
ORF3a | 44 | G44V | gGa | gTa | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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