CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 44

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a44G44RnonsynGgaAga270823230.85782925522-25524
ORF3a44G44RnonsynGgaCga27083850.14217125522-25524
ORF3a44G44VnonsyngGagTa14381438125522-25524
ORF3a44G44GsynggAggG10056330.62985125522-25524
ORF3a44G44GsynggAggC10052870.28557225522-25524
ORF3a44G44GsynggAggT1005850.084577125522-25524
ORF3a44G44deldelGGA---904904125522-25524
ORF3a44G44EnonsyngGagAa843843125522-25524
ORF3a44G44XnonsynGgaTga3333125522-25524
ORF3a44G44AnonsyngGagCa27260.96296325522-25524
ORF3a44G44AnonsyngGAgCG2710.03703725522-25524
ORF3a44G44LnonsynGGaTTa2222125522-25524
ORF3a44G44QnonsynGGaCAa44125522-25524
ORF3a44G44WnonsynGgATgG44125522-25524
ORF3a44G44KnonsynGGaAAa33125522-25524
ORF3a44G44del1delGga-ga22125522-25524
ORF3a44G44del2delGGA--N210.525522-25524
ORF3a44G44del2delgGAg--210.525522-25524
ORF3a44G44CnonsynGgATgC11125522-25524
ORF3a44G44SnonsynGGaTCa11125522-25524

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a44G44RGgaAga23232708All0.000444
ORF3a44G44RGgaCga3852708All0.000074
ORF3a44G44VgGagTa14381438All0.000275
ORF3a44G44GggAggG6331005All0.000121
ORF3a44G44GggAggC2871005All0.000055
ORF3a44G44GggAggT851005All0.000016
ORF3a44G44delGGA---904904All0.000173
ORF3a44G44EgGagAa843843All0.000161
ORF3a44G44RGgaAga749767B.1.1.70.000671
ORF3a44G44RGgaCga18767B.1.1.70.000016
ORF3a44G44RGgaAga328328B.1.10.00595
ORF3a44G44EgGagAa242242B.1.1110.284371
ORF3a44G44GggAggG186220B.1.1.70.000167
ORF3a44G44GggAggC29220B.1.1.70.000026
ORF3a44G44GggAggT5220B.1.1.70.000004
ORF3a44G44RGgaCga213217AY.1200.007919
ORF3a44G44RGgaAga4217AY.1200.000149
ORF3a44G44VgGagTa215215B.1.4260.216953
ORF3a44G44EgGagAa202202B.1.1.70.000181
ORF3a44G44RGgaAga189194AY.40.000294
ORF3a44G44RGgaCga5194AY.40.000008
ORF3a44G44delGGA---193193AY.260.005464
ORF3a44G44GggAggC164165B.1.1.5190.006513
ORF3a44G44GggAggG1165B.1.1.5190.00004
ORF3a44G44RGgaAga158158P.20.029489
ORF3a44G44delGGA---153153B.1.6300.801047
ORF3a44G44VgGagTa126126B.1.1.70.000113
ORF3a44G44VgGagTa115115B.1.20.001013
ORF3a44G44RGgaAga103106B.1.20.000907
ORF3a44G44RGgaCga3106B.1.20.000026
ORF3a44G44VgGagTa100100AY.50.002065
ORF3a44G44delGGA---7878AY.750.00437
ORF3a44G44RGgaAga7575P.10.001182
ORF3a44G44EgGagAa7272B.1.10.001306
ORF3a44G44VgGagTa7171AY.1030.000441
ORF3a44G44VgGagTa7070AY.40.000109
ORF3a44G44RGgaAga4866AY.440.000292
ORF3a44G44RGgaCga1866AY.440.00011
ORF3a44G44GggAggG4060B.1.617.20.000151
ORF3a44G44GggAggT1360B.1.617.20.000049
ORF3a44G44GggAggC760B.1.617.20.000026
ORF3a44G44VgGagTa5858B.1.617.20.000218
ORF3a44G44RGgaAga5455AY.30.000537
ORF3a44G44RGgaCga155AY.30.00001
ORF3a44G44RGgaAga4753B.1.617.20.000177
ORF3a44G44RGgaCga653B.1.617.20.000023
ORF3a44G44GggAggG2750AY.250.000162
ORF3a44G44GggAggC2350AY.250.000138
ORF3a44G44delGGA---4747AY.430.000208
ORF3a44G44delGGA---4343AY.40.000067
ORF3a44G44RGgaCga4243B.1.2580.002795
ORF3a44G44RGgaAga143B.1.2580.000067
ORF3a44G44GggAggG3340AY.1030.000205
ORF3a44G44GggAggT540AY.1030.000031
ORF3a44G44GggAggC240AY.1030.000012
ORF3a44G44RGgaAga3939AY.1030.000242
ORF3a44G44EgGagAa3838AY.40.000059
ORF3a44G44GggAggG2838B.10.000256
ORF3a44G44GggAggT838B.10.000073
ORF3a44G44GggAggC238B.10.000018
ORF3a44G44delGGA---3737B.1.1.70.000033
ORF3a44G44GggAggG3136AY.40.000048
ORF3a44G44GggAggC336AY.40.000005
ORF3a44G44GggAggT236AY.40.000003
ORF3a44G44EgGagAa3636AY.4.20.000781
ORF3a44G44delGGA---3535B.1.1770.000461
ORF3a44G44RGgaAga3334AY.250.000198
ORF3a44G44RGgaCga134AY.250.000006
ORF3a44G44XGgaTga3333All0.000006
ORF3a44G44GggAggG3333B.1.2430.002296
ORF3a44G44EgGagAa3232B.1.1770.000421
ORF3a44G44RGgaCga2432B.1.1770.000316
ORF3a44G44RGgaAga832B.1.1770.000105
ORF3a44G44VgGagTa3131AY.430.000137
ORF3a44G44VgGagTa3131B.1.381
ORF3a44G44VgGagTa3030P.1.140.001434
ORF3a44G44VgGagTa2929AY.1020.000769
ORF3a44G44GggAggG2929AY.1200.001078
ORF3a44G44delGGA---2929AY.250.000174
ORF3a44G44VgGagTa2929B.10.000266
ORF3a44G44RGgaAga2829B.10.000256
ORF3a44G44RGgaCga129B.10.000009
ORF3a44G44VgGagTa2929P.10.000457
ORF3a44G44AgGagCa2627All0.000005
ORF3a44G44AgGAgCG127All0
ORF3a44G44VgGagTa2727B.1.1150.586957
ORF3a44G44RGgaAga2525A.290.132979
ORF3a44G44GggAggG1725B.1.20.00015
ORF3a44G44GggAggC725B.1.20.000062
ORF3a44G44GggAggT125B.1.20.000009
ORF3a44G44VgGagTa2424AY.10.009497
ORF3a44G44VgGagTa2424AY.440.000146
ORF3a44G44delGGA---2424B.1.10.000435
ORF3a44G44EgGagAa2323AY.1030.000143
ORF3a44G44VgGagTa2323AY.30.000229
ORF3a44G44LGGaTTa2222All0.000004
ORF3a44G44GggAggT1321AY.1020.000345
ORF3a44G44GggAggG721AY.1020.000186
ORF3a44G44GggAggC121AY.1020.000027
ORF3a44G44delGGA---2121B.1.5260.000494
ORF3a44G44EgGagAa2020AY.50.000413
ORF3a44G44RGgaAga2020B.1.4290.000471
ORF3a44G44GggAggG1819B.1.4290.000424
ORF3a44G44GggAggC119B.1.4290.000024
ORF3a44G44RGgaAga1818AY.3.10.001535
ORF3a44G44RGgaAga1818B.1.1460.076271
ORF3a44G44RGgaAga1818B.1.4270.000909
ORF3a44G44VgGagTa1717AY.290.000268
ORF3a44G44delGGA---1717AY.30.000169
ORF3a44G44RGgaAga1517AY.430.000066
ORF3a44G44RGgaCga217AY.430.000009
ORF3a44G44delGGA---1717B.1.617.20.000064
ORF3a44G44GggAggG1117P.10.000173
ORF3a44G44GggAggT317P.10.000047
ORF3a44G44GggAggC317P.10.000047
ORF3a44G44VgGagTa1616B.1.4970.005036
ORF3a44G44GggAggG915AY.430.00004
ORF3a44G44GggAggC615AY.430.000027
ORF3a44G44EgGagAa1515B.10.000137
ORF3a44G44RGgaAga1414AY.1000.000644
ORF3a44G44RGgaCga1014AY.50.000206
ORF3a44G44RGgaAga414AY.50.000083
ORF3a44G44VgGagTa1414B.1.10.000254
ORF3a44G44VgGagTa1414B.1.1.2530.035088
ORF3a44G44VgGagTa1313AY.250.000078
ORF3a44G44RGgaAga713AY.470.000218
ORF3a44G44RGgaCga613AY.470.000187
ORF3a44G44EgGagAa1313B.1.20.000114
ORF3a44G44GggAggG1313P.1.150.00302
ORF3a44G44RGgaAga1212AY.290.000189
ORF3a44G44VgGagTa1212B.1.1600.000374
ORF3a44G44RGgaAga1212B.1.4780.141176
ORF3a44G44GggAggG611AY.1000.000276
ORF3a44G44GggAggT511AY.1000.00023
ORF3a44G44VgGagTa1111B.1.1.5190.000437
ORF3a44G44VgGagTa1111B.1.1770.000145
ORF3a44G44delGGA---1010AY.1030.000062
ORF3a44G44RGgaAga1010AY.230.000697
ORF3a44G44VgGagTa1010AY.340.00097
ORF3a44G44delGGA---1010AY.440.000061
ORF3a44G44RGgaAga1010AY.99.20.000922
ORF3a44G44GggAggC810B.1.1770.000105
ORF3a44G44GggAggG110B.1.1770.000013
ORF3a44G44GggAggT110B.1.1770.000013
ORF3a44G44VgGagTa1010B.1.2210.00071
ORF3a44G44GggAggC910B.1.2400.00194
ORF3a44G44GggAggG110B.1.2400.000216
ORF3a44G44EgGagAa1010B.1.617.20.000038
ORF3a44G44EgGagAa99AA.10.065217
ORF3a44G44VgGagTa99AY.1140.00208
ORF3a44G44RGgaAga99AY.330.000601
ORF3a44G44RGgaAga99AY.340.000873
ORF3a44G44XGgaTga99AY.40.000014
ORF3a44G44RGgaCga79AY.540.000667
ORF3a44G44RGgaAga29AY.540.000191
ORF3a44G44AgGagCa89B.1.10.000145
ORF3a44G44AgGAgCG19B.1.10.000018
ORF3a44G44VgGagTa99B.1.1.2140.000499
ORF3a44G44delGGA---99B.1.1.2740.045455
ORF3a44G44delGGA---99B.1.2580.000599
ORF3a44G44RGgaAga99B.1.466.20.003521
ORF3a44G44EgGagAa99B.1.5750.002731
ORF3a44G44RGgaAga78AY.1020.000186
ORF3a44G44RGgaCga18AY.1020.000027
ORF3a44G44GggAggG88AY.1180.000501
ORF3a44G44delGGA---88AY.390.000198
ORF3a44G44VgGagTa88AY.460.000833
ORF3a44G44RGgaAga88AY.630.003095
ORF3a44G44RGgaAga88AY.690.001493
ORF3a44G44RGgaAga88B.1.1.3740.019002
ORF3a44G44LGGaTTa88B.1.1.70.000007
ORF3a44G44EgGagAa88B.1.4410.076923
ORF3a44G44RGgaAga88N.60.056738
ORF3a44G44EgGagAa88Q.10.001011
ORF3a44G44GggAggG77AY.290.00011
ORF3a44G44GggAggG37AY.30.00003
ORF3a44G44GggAggC27AY.30.00002
ORF3a44G44GggAggT27AY.30.00002
ORF3a44G44GggAggG57AY.390.000124
ORF3a44G44GggAggT17AY.390.000025
ORF3a44G44GggAggC17AY.390.000025
ORF3a44G44VgGagTa77AY.4.20.000152
ORF3a44G44EgGagAa77AY.610.000733
ORF3a44G44VgGagTa77AY.990.007345
ORF3a44G44delGGA---77B.10.000064
ORF3a44G44GggAggG47B.1.10.000073
ORF3a44G44GggAggC37B.1.10.000054
ORF3a44G44RGgaAga77B.1.1.2250.05036
ORF3a44G44RGgaAga77B.1.1.2650.022082
ORF3a44G44VgGagTa77B.1.1.3110.002507
ORF3a44G44RGgaAga77B.1.1600.000218
ORF3a44G44VgGagTa77B.1.5250.000792
ORF3a44G44RGgaAga77B.1.5510.009032
ORF3a44G44VgGagTa66AY.1210.000812
ORF3a44G44GggAggG66AY.230.000418
ORF3a44G44RGgaCga46AY.4.20.000087
ORF3a44G44RGgaAga26AY.4.20.000043
ORF3a44G44GggAggG46AY.440.000024
ORF3a44G44GggAggT16AY.440.000006
ORF3a44G44GggAggC16AY.440.000006
ORF3a44G44VgGagTa66AY.46.60.000433
ORF3a44G44delGGA---66AY.50.000124
ORF3a44G44VgGagTa66AY.740.000694
ORF3a44G44VgGagTa66B.1.1.2090.053571
ORF3a44G44VgGagTa66B.1.1.390.003058
ORF3a44G44VgGagTa66B.1.110.30.00431
ORF3a44G44delGGA---66B.1.1600.000187
ORF3a44G44GggAggG66B.1.5260.000141
ORF3a44G44VgGagTa55AY.1000.00023
ORF3a44G44EgGagAa55AY.1020.000133
ORF3a44G44EgGagAa55AY.1170.000423
ORF3a44G44VgGagTa55AY.1190.000177
ORF3a44G44VgGagTa55AY.420.000201
ORF3a44G44EgGagAa55AY.440.00003
ORF3a44G44GggAggT55AY.46.60.000361
ORF3a44G44RGgaAga45AY.750.000224
ORF3a44G44RGgaCga15AY.750.000056
ORF3a44G44EgGagAa55AY.9.20.000184
ORF3a44G44VgGagTa55B.1.1.2840.000537
ORF3a44G44VgGagTa55B.1.2580.000333
ORF3a44G44VgGagTa55B.1.4160.006345
ORF3a44G44delGGA---55B.1.438.10.000536
ORF3a44G44RGgaAga55B.1.5700.014706
ORF3a44G44GggAggG35B.1.5960.000261
ORF3a44G44GggAggT15B.1.5960.000087
ORF3a44G44GggAggC15B.1.5960.000087
ORF3a44G44RGgaCga440.222222
ORF3a44G44VgGagTa44A.23.10.002817
ORF3a44G44WGgATgG44All0.000001
ORF3a44G44QGGaCAa44All0.000001
ORF3a44G44VgGagTa44AY.1110.000733
ORF3a44G44RGgaCga24AY.1210.000271
ORF3a44G44RGgaAga24AY.1210.000271
ORF3a44G44GggAggG44AY.200.000155
ORF3a44G44RGgaAga44AY.200.000155
ORF3a44G44RGgaAga44AY.220.008368
ORF3a44G44delGGA---44AY.4.20.000087
ORF3a44G44VgGagTa44AY.450.000487
ORF3a44G44VgGagTa44AY.470.000124
ORF3a44G44EgGagAa44AY.540.000381
ORF3a44G44VgGagTa44AY.750.000224
ORF3a44G44GggAggT44AY.840.00175
ORF3a44G44delGGA---44AY.9.10.000335
ORF3a44G44VgGagTa44AY.940.001771
ORF3a44G44VgGagTa44AY.98.10.000194
ORF3a44G44RGgaAga44AY.98.10.000194
ORF3a44G44GggAggC44B.1.1.3060.001754
ORF3a44G44RGgaAga44B.1.1.5190.000159
ORF3a44G44EgGagAa44B.1.1600.000125
ORF3a44G44RGgaCga24B.1.360.000292
ORF3a44G44RGgaAga24B.1.360.000292
ORF3a44G44GggAggG44B.1.3670.00317
ORF3a44G44RGgaAga44B.1.438.40.085106
ORF3a44G44RGgaAga44B.1.5250.000453
ORF3a44G44RGgaAga44B.1.6210.000354
ORF3a44G44VgGagTa44B.1.6270.008081
ORF3a44G44GggAggG44C.370.000464
ORF3a44G44XGgaTga44P.1.140.000191
ORF3a44G44GggAggG44P.1.140.000191
ORF3a44G44delGGA---44P.1.90.019231
ORF3a44G44VgGagTa44P.20.000747
ORF3a44G44RGgaAga44Q.80.00066
ORF3a44G44KGGaAAa33All0.000001
ORF3a44G44RGgaAga33AY.1070.001398
ORF3a44G44RGgaAga33AY.1190.000106
ORF3a44G44EgGagAa33AY.1190.000106
ORF3a44G44EgGagAa33AY.30.00003
ORF3a44G44GggAggT23AY.360.000296
ORF3a44G44GggAggG13AY.360.000148
ORF3a44G44RGgaAga33AY.390.000074
ORF3a44G44delGGA---33AY.39.10.000119
ORF3a44G44RGgaAga33AY.4.30.002525
ORF3a44G44delGGA---33AY.4.50.000322
ORF3a44G44RGgaAga33AY.4.50.000322
ORF3a44G44delGGA---33AY.450.000365
ORF3a44G44RGgaAga23AY.450.000243
ORF3a44G44RGgaCga13AY.450.000122
ORF3a44G44GggAggG33AY.50.000062
ORF3a44G44delGGA---33AY.740.000347
ORF3a44G44GggAggG33AY.750.000168
ORF3a44G44RGgaCga23AY.75.10.000361
ORF3a44G44RGgaAga13AY.75.10.00018
ORF3a44G44GggAggG33AY.770.003382
ORF3a44G44GggAggG33AY.880.002653
ORF3a44G44GggAggG33AY.9.10.000251
ORF3a44G44VgGagTa33AY.9.20.00011
ORF3a44G44RGgaAga33AY.9.20.00011
ORF3a44G44delGGA---33AY.980.000237
ORF3a44G44XGgaTga33B.10.000027
ORF3a44G44RGgaAga33B.1.1.1330.025424
ORF3a44G44EgGagAa33B.1.1.2140.000166
ORF3a44G44RGgaAga33B.1.1.2220.000612
ORF3a44G44EgGagAa33B.1.1.3180.000905
ORF3a44G44WGgATgG33B.1.1.70.000003
ORF3a44G44AgGagCa33B.1.1.70.000003
ORF3a44G44delGGA---33B.1.160.240.013274
ORF3a44G44VgGagTa33B.1.177.810.000568
ORF3a44G44GggAggG33B.1.177.810.000568
ORF3a44G44EgGagAa33B.1.2400.000647
ORF3a44G44RGgaAga33B.1.258.200.047619
ORF3a44G44VgGagTa33B.1.3360.007317
ORF3a44G44delGGA---33B.1.36.170.001482
ORF3a44G44VgGagTa33B.1.4270.000151
ORF3a44G44delGGA---33B.1.4270.000151
ORF3a44G44EgGagAa33B.1.4290.000071
ORF3a44G44VgGagTa33B.1.4290.000071
ORF3a44G44VgGagTa33B.1.438.10.000322
ORF3a44G44RGgaAga33B.1.5090.002597
ORF3a44G44EgGagAa33B.1.5260.000071
ORF3a44G44VgGagTa33B.1.617.10.000387
ORF3a44G44delGGA---33B.1.6370.000219
ORF3a44G44VgGagTa33P.1.100.000808
ORF3a44G44RGgaAga33P.1.140.000143
ORF3a44G44delGGA---33U.30.011583
ORF3a44G44QGGaCAa220.111111
ORF3a44G44RGgaAga22AB.10.016393
ORF3a44G44RGgaAga22AE.80.000978
ORF3a44G44del1Gga-ga22All0
ORF3a44G44del2gGAg--12All0
ORF3a44G44del2GGA--N12All0
ORF3a44G44delGGA---22AY.1000.000092
ORF3a44G44VgGagTa22AY.1090.001479
ORF3a44G44delGGA---22AY.1130.000285
ORF3a44G44delGGA---22AY.1180.000125
ORF3a44G44VgGagTa22AY.1180.000125
ORF3a44G44delGGA---22AY.1190.000071
ORF3a44G44GggAggT12AY.1190.000035
ORF3a44G44GggAggG12AY.1190.000035
ORF3a44G44VgGagTa22AY.120.000632
ORF3a44G44delGGA---22AY.1200.000074
ORF3a44G44AgGagCa22AY.1200.000074
ORF3a44G44GggAggT22AY.120.20.002571
ORF3a44G44delGGA---22AY.130.000322
ORF3a44G44VgGagTa22AY.140.000176
ORF3a44G44EgGagAa22AY.140.000176
ORF3a44G44GggAggG22AY.140.000176
ORF3a44G44EgGagAa22AY.230.000139
ORF3a44G44delGGA---22AY.230.000139
ORF3a44G44VgGagTa22AY.260.000057
ORF3a44G44GggAggG22AY.260.000057
ORF3a44G44GggAggG22AY.280.003781
ORF3a44G44delGGA---22AY.290.000032
ORF3a44G44GggAggG22AY.29.10.000441
ORF3a44G44XGgaTga22AY.30.00002
ORF3a44G44LGGaTTa22AY.330.000134
ORF3a44G44delGGA---22AY.330.000134
ORF3a44G44GggAggG22AY.330.000134
ORF3a44G44delGGA---22AY.340.000194
ORF3a44G44RGgaAga22AY.360.000296
ORF3a44G44RGgaAga22AY.39.10.000079
ORF3a44G44GggAggG22AY.4.20.000043
ORF3a44G44EgGagAa22AY.430.000009
ORF3a44G44RGgaAga22AY.460.000208
ORF3a44G44EgGagAa22AY.460.000208
ORF3a44G44delGGA---22AY.46.20.001271
ORF3a44G44GggAggG22AY.46.40.000329
ORF3a44G44GggAggG22AY.480.00093
ORF3a44G44VgGagTa22AY.5.40.000553
ORF3a44G44delGGA---22AY.540.000191
ORF3a44G44RGgaAga22AY.590.001059
ORF3a44G44delGGA---22AY.60.000082
ORF3a44G44GggAggG22AY.610.00021
ORF3a44G44delGGA---22AY.670.000929
ORF3a44G44VgGagTa22AY.700.000417
ORF3a44G44delGGA---22AY.810.003984
ORF3a44G44RGgaAga22B.1.1.10.000653
ORF3a44G44RGgaAga22B.1.1.100.00223
ORF3a44G44RGgaAga22B.1.1.1610.007067
ORF3a44G44RGgaAga22B.1.1.1740.006757
ORF3a44G44GggAggT22B.1.1.2140.000111
ORF3a44G44VgGagTa22B.1.1.2200.003717
ORF3a44G44RGgaCga22B.1.1.3480.001592
ORF3a44G44VgGagTa22B.1.1.4200.002012
ORF3a44G44GggAggG22B.1.1.4320.002532
ORF3a44G44VgGagTa22B.1.1.4320.002532
ORF3a44G44delGGA---22B.1.1.4640.002946
ORF3a44G44VgGagTa22B.1.1.500.001358
ORF3a44G44EgGagAa22B.1.1.5190.000079
ORF3a44G44delGGA---22B.1.1.5190.000079
ORF3a44G44RGgaAga22B.1.1.630.000772
ORF3a44G44EgGagAa22B.1.1.630.000772
ORF3a44G44GggAggG22B.1.1600.000062
ORF3a44G44delGGA---22B.1.160.330.00885
ORF3a44G44RGgaAga22B.1.177.620.002384
ORF3a44G44VgGagTa22B.1.177.820.000955
ORF3a44G44delGGA---22B.1.20.000018
ORF3a44G44RGgaAga22B.1.2100.004264
ORF3a44G44RGgaAga22B.1.2210.000142
ORF3a44G44delGGA---22B.1.2210.000142
ORF3a44G44RGgaAga22B.1.2430.000139
ORF3a44G44VgGagTa22B.1.2430.000139
ORF3a44G44QGGaCAa22B.1.2580.000133
ORF3a44G44RGgaAga22B.1.258.220.005333
ORF3a44G44RGgaAga22B.1.3510.000059
ORF3a44G44EgGagAa22B.1.3510.000059
ORF3a44G44VgGagTa22B.1.3510.000059
ORF3a44G44GggAggG12B.1.3510.00003
ORF3a44G44GggAggC12B.1.3510.00003
ORF3a44G44delGGA---22B.1.36.240.012346
ORF3a44G44delGGA---22B.1.36.380.003284
ORF3a44G44VgGagTa22B.1.36.80.002
ORF3a44G44EgGagAa22B.1.4270.000101
ORF3a44G44LGGaTTa22B.1.4290.000047
ORF3a44G44delGGA---22B.1.4290.000047
ORF3a44G44RGgaAga22B.1.4690.00722
ORF3a44G44delGGA---22B.1.5250.000226
ORF3a44G44RGgaAga22B.1.5260.000047
ORF3a44G44delGGA---22B.1.5370.04
ORF3a44G44VgGagTa22B.1.5680.002222
ORF3a44G44RGgaAga22B.1.6090.000959
ORF3a44G44VgGagTa22B.1.6210.000177
ORF3a44G44delGGA---22B.1.6210.000177
ORF3a44G44EgGagAa22B.1.6210.000177
ORF3a44G44GggAggG12B.1.6210.000089
ORF3a44G44GggAggC12B.1.6210.000089
ORF3a44G44VgGagTa22B.1.6230.001073
ORF3a44G44VgGagTa22B.1.6370.000146
ORF3a44G44delGGA---22D.20.00015
ORF3a44G44VgGagTa22D.20.00015
ORF3a44G44RGgaAga22N.50.003534
ORF3a44G44AgGagCa22P.10.000032
ORF3a44G44delGGA---22P.10.000032
ORF3a44G44LGGaTTa22P.10.000032
ORF3a44G44EgGagAa22P.1.120.000968
ORF3a44G44AgGagCa22P.1.150.000465
ORF3a44G44EgGagAa22P.1.160.000748
ORF3a44G44GggAggC12P.1.70.000319
ORF3a44G44GggAggG12P.1.70.000319
ORF3a44G44GggAggG22P.20.000373
ORF3a44G44VgGagTa22Q.80.00033
ORF3a44G44delGGA---11A.2.30.004739
ORF3a44G44GggAggC11A.2.50.000499
ORF3a44G44RGgaAga11A.2.5.20.001572
ORF3a44G44RGgaAga11A.270.001656
ORF3a44G44RGgaAga11A.280.002646
ORF3a44G44GggAggT11AD.20.000219
ORF3a44G44delGGA---11AH.30.003802
ORF3a44G44SGGaTCa11All0
ORF3a44G44CGgATgC11All0
ORF3a44G44VgGagTa11AY.100.00053
ORF3a44G44EgGagAa11AY.100.00053
ORF3a44G44RGgaAga11AY.1010.00049
ORF3a44G44delGGA---11AY.1020.000027
ORF3a44G44GggAggG11AY.1050.000643
ORF3a44G44GggAggC11AY.1060.000335
ORF3a44G44VgGagTa11AY.1070.000466
ORF3a44G44RGgaAga11AY.1080.001103
ORF3a44G44delGGA---11AY.1100.000113
ORF3a44G44GggAggT11AY.1100.000113
ORF3a44G44VgGagTa11AY.1100.000113
ORF3a44G44delGGA---11AY.1110.000183
ORF3a44G44XGgaTga11AY.1130.000142
ORF3a44G44delGGA---11AY.1140.000231
ORF3a44G44RGgaAga11AY.116.10.000311
ORF3a44G44EgGagAa11AY.116.10.000311
ORF3a44G44delGGA---11AY.1170.000085
ORF3a44G44RGgaAga11AY.1180.000063
ORF3a44G44del2GGA--N11AY.1200.000037
ORF3a44G44VgGagTa11AY.1200.000037
ORF3a44G44RGgaCga11AY.120.20.001285
ORF3a44G44delGGA---11AY.140.000088
ORF3a44G44RGgaAga11AY.160.00038
ORF3a44G44VgGagTa11AY.160.00038
ORF3a44G44GggAggG11AY.16.10.00047
ORF3a44G44GggAggG11AY.190.00114
ORF3a44G44VgGagTa11AY.20.000356
ORF3a44G44delGGA---11AY.200.000039
ORF3a44G44LGGaTTa11AY.200.000039
ORF3a44G44GggAggG11AY.240.000431
ORF3a44G44XGgaTga11AY.250.000006
ORF3a44G44RGgaAga11AY.260.000028
ORF3a44G44GggAggG11AY.270.000065
ORF3a44G44RGgaCga11AY.270.000065
ORF3a44G44LGGaTTa11AY.270.000065
ORF3a44G44VgGagTa11AY.270.000065
ORF3a44G44EgGagAa11AY.290.000016
ORF3a44G44delGGA---11AY.29.10.000221
ORF3a44G44WGgATgG11AY.30.00001
ORF3a44G44LGGaTTa11AY.30.00001
ORF3a44G44GggAggG11AY.3.10.000085
ORF3a44G44delGGA---11AY.3.10.000085
ORF3a44G44VgGagTa11AY.330.000067
ORF3a44G44GggAggG11AY.340.000097
ORF3a44G44GggAggG11AY.34.10.00051
ORF3a44G44VgGagTa11AY.34.10.00051
ORF3a44G44VgGagTa11AY.360.000148
ORF3a44G44EgGagAa11AY.390.000025
ORF3a44G44XGgaTga11AY.39.10.00004
ORF3a44G44GggAggG11AY.39.10.00004
ORF3a44G44AgGagCa11AY.40.000002
ORF3a44G44del1Gga-ga11AY.40.000002
ORF3a44G44XGgaTga11AY.4.20.000022
ORF3a44G44VgGagTa11AY.4.2.10.000149
ORF3a44G44RGgaCga11AY.4.2.10.000149
ORF3a44G44del2gGAg--11AY.4.50.000107
ORF3a44G44RGgaAga11AY.420.00004
ORF3a44G44AgGagCa11AY.420.00004
ORF3a44G44delGGA---11AY.420.00004
ORF3a44G44XGgaTga11AY.430.000004
ORF3a44G44del1Gga-ga11AY.440.000006
ORF3a44G44CGgATgC11AY.440.000006
ORF3a44G44RGgaAga11AY.46.20.000635
ORF3a44G44delGGA---11AY.46.40.000165
ORF3a44G44RGgaAga11AY.46.40.000165
ORF3a44G44RGgaCga11AY.46.60.000072
ORF3a44G44GggAggG11AY.470.000031
ORF3a44G44GggAggG11AY.5.20.002463
ORF3a44G44GggAggG11AY.520.000814
ORF3a44G44delGGA---11AY.590.00053
ORF3a44G44EgGagAa11AY.590.00053
ORF3a44G44VgGagTa11AY.590.00053
ORF3a44G44GggAggT11AY.60.000041
ORF3a44G44RGgaCga11AY.600.000938
ORF3a44G44delGGA---11AY.650.000533
ORF3a44G44VgGagTa11AY.680.000274
ORF3a44G44VgGagTa11AY.70.000196
ORF3a44G44delGGA---11AY.70.000196
ORF3a44G44delGGA---11AY.7.10.000113
ORF3a44G44GggAggG11AY.700.000209
ORF3a44G44GggAggG11AY.720.001361
ORF3a44G44delGGA---11AY.75.10.00018
ORF3a44G44GggAggG11AY.760.004831
ORF3a44G44RGgaCga11AY.790.001211
ORF3a44G44VgGagTa11AY.80.000606
ORF3a44G44GggAggG11AY.830.001724
ORF3a44G44GggAggG11AY.850.000427
ORF3a44G44RGgaCga11AY.850.000427
ORF3a44G44EgGagAa11AY.90.000068
ORF3a44G44LGGaTTa11AY.90.000068
ORF3a44G44delGGA---11AY.90.000068
ORF3a44G44GggAggG11AY.90.000068
ORF3a44G44VgGagTa11AY.9.10.000084
ORF3a44G44delGGA---11AY.9.20.000037
ORF3a44G44delGGA---11AY.900.000684
ORF3a44G44EgGagAa11AY.910.00073
ORF3a44G44delGGA---11AY.910.00073
ORF3a44G44delGGA---11AY.930.000273
ORF3a44G44delGGA---11AY.940.000443
ORF3a44G44GggAggG11AY.98.10.000048
ORF3a44G44delGGA---11AY.98.10.000048
ORF3a44G44LGGaTTa11AY.98.10.000048
ORF3a44G44VgGagTa11AY.99.20.000092
ORF3a44G44delGGA---11AY.99.20.000092
ORF3a44G44RGgaAga11AZ.50.003509
ORF3a44G44EgGagAa11B0.000128
ORF3a44G44delGGA---11B0.000128
ORF3a44G44GggAggG11B0.000128
ORF3a44G44AgGagCa11B.10.000009
ORF3a44G44LGGaTTa11B.1.10.000018
ORF3a44G44EgGagAa11B.1.1.1170.009709
ORF3a44G44VgGagTa11B.1.1.1170.009709
ORF3a44G44XGgaTga11B.1.1.1390.022727
ORF3a44G44VgGagTa11B.1.1.1410.002012
ORF3a44G44RGgaAga11B.1.1.1710.003676
ORF3a44G44RGgaAga11B.1.1.1970.037037
ORF3a44G44RGgaAga11B.1.1.2070.001182
ORF3a44G44delGGA---11B.1.1.2140.000055
ORF3a44G44XGgaTga11B.1.1.2140.000055
ORF3a44G44LGGaTTa11B.1.1.2140.000055
ORF3a44G44GggAggT11B.1.1.2160.00089
ORF3a44G44delGGA---11B.1.1.2250.007194
ORF3a44G44RGgaAga11B.1.1.2310.003096
ORF3a44G44RGgaAga11B.1.1.250.000569
ORF3a44G44EgGagAa11B.1.1.2690.001353
ORF3a44G44RGgaAga11B.1.1.2770.000759
ORF3a44G44delGGA---11B.1.1.2790.001121
ORF3a44G44RGgaAga11B.1.1.280.000311
ORF3a44G44delGGA---11B.1.1.280.000311
ORF3a44G44GggAggG11B.1.1.2860.002899
ORF3a44G44EgGagAa11B.1.1.2940.001266
ORF3a44G44VgGagTa11B.1.1.2940.001266
ORF3a44G44VgGagTa11B.1.1.3010.001179
ORF3a44G44XGgaTga11B.1.1.3020.002075
ORF3a44G44RGgaAga11B.1.1.3040.002809
ORF3a44G44delGGA---11B.1.1.3060.000438
ORF3a44G44RGgaCga11B.1.1.3110.000358
ORF3a44G44RGgaAga11B.1.1.3290.003846
ORF3a44G44GggAggC11B.1.1.330.000421
ORF3a44G44GggAggG11B.1.1.3470.018182
ORF3a44G44GggAggG11B.1.1.3480.000796
ORF3a44G44EgGagAa11B.1.1.3510.002793
ORF3a44G44RGgaAga11B.1.1.3630.005988
ORF3a44G44VgGagTa11B.1.1.3720.000689
ORF3a44G44RGgaAga11B.1.1.390.00051
ORF3a44G44VgGagTa11B.1.1.3960.045455
ORF3a44G44RGgaAga11B.1.1.3970.002252
ORF3a44G44delGGA---11B.1.1.4090.002833
ORF3a44G44EgGagAa11B.1.1.4090.002833
ORF3a44G44VgGagTa11B.1.1.4090.002833
ORF3a44G44RGgaAga11B.1.1.410.006329
ORF3a44G44RGgaAga11B.1.1.4180.022727
ORF3a44G44VgGagTa11B.1.1.4310.016129
ORF3a44G44VgGagTa11B.1.1.4480.002033
ORF3a44G44RGgaAga11B.1.1.450.014085
ORF3a44G44EgGagAa11B.1.1.480.002874
ORF3a44G44delGGA---11B.1.1.500.000679
ORF3a44G44RGgaAga11B.1.1.5070.008696
ORF3a44G44KGGaAAa11B.1.1.70.000001
ORF3a44G44XGgaTga11B.1.1.70.000001
ORF3a44G44GggAggG11B.1.1.700.000341
ORF3a44G44VgGagTa11B.1.1.80.003584
ORF3a44G44RGgaAga11B.1.1080.005814
ORF3a44G44VgGagTa11B.1.1390.000733
ORF3a44G44EgGagAa11B.1.1580.02381
ORF3a44G44GggAggT11B.1.160.160.000929
ORF3a44G44RGgaAga11B.1.160.160.000929
ORF3a44G44AgGagCa11B.1.1770.000013
ORF3a44G44KGGaAAa11B.1.1770.000013
ORF3a44G44delGGA---11B.1.177.120.000152
ORF3a44G44GggAggT11B.1.177.120.000152
ORF3a44G44GggAggT11B.1.177.170.000821
ORF3a44G44delGGA---11B.1.177.210.000076
ORF3a44G44KGGaAAa11B.1.177.30.007634
ORF3a44G44RGgaAga11B.1.177.560.000668
ORF3a44G44RGgaAga11B.1.177.570.000281
ORF3a44G44delGGA---11B.1.177.60.000977
ORF3a44G44VgGagTa11B.1.177.600.000218
ORF3a44G44GggAggC11B.1.177.730.000566
ORF3a44G44VgGagTa11B.1.177.730.000566
ORF3a44G44XGgaTga11B.1.177.810.000189
ORF3a44G44RGgaAga11B.1.177.850.005435
ORF3a44G44XGgaTga11B.1.20.000009
ORF3a44G44GggAggG11B.1.2100.002132
ORF3a44G44GggAggC11B.1.2340.000132
ORF3a44G44VgGagTa11B.1.2360.002053
ORF3a44G44delGGA---11B.1.2410.000812
ORF3a44G44EgGagAa11B.1.2430.00007
ORF3a44G44AgGagCa11B.1.2580.000067
ORF3a44G44EgGagAa11B.1.2630.047619
ORF3a44G44VgGagTa11B.1.2790.000514
ORF3a44G44EgGagAa11B.1.2980.002114
ORF3a44G44GggAggT11B.1.3110.000275
ORF3a44G44VgGagTa11B.1.3110.000275
ORF3a44G44VgGagTa11B.1.3260.007576
ORF3a44G44VgGagTa11B.1.3330.010526
ORF3a44G44RGgaAga11B.1.351.30.000876
ORF3a44G44GggAggG11B.1.351.50.0006
ORF3a44G44EgGagAa11B.1.36.100.004785
ORF3a44G44VgGagTa11B.1.36.170.000494
ORF3a44G44VgGagTa11B.1.36.180.00042
ORF3a44G44VgGagTa11B.1.36.290.000517
ORF3a44G44RGgaAga11B.1.36.290.000517
ORF3a44G44GggAggG11B.1.36.290.000517
ORF3a44G44RGgaAga11B.1.36.310.001751
ORF3a44G44VgGagTa11B.1.36.380.001642
ORF3a44G44RGgaAga11B.1.36.80.001
ORF3a44G44VgGagTa11B.1.3620.001541
ORF3a44G44VgGagTa11B.1.3670.000792
ORF3a44G44GggAggG11B.1.3690.000285
ORF3a44G44RGgaAga11B.1.3690.000285
ORF3a44G44VgGagTa11B.1.3990.001934
ORF3a44G44VgGagTa11B.1.4000.000429
ORF3a44G44EgGagAa11B.1.4000.000429
ORF3a44G44GggAggG11B.1.4000.000429
ORF3a44G44EgGagAa11B.1.4080.00369
ORF3a44G44VgGagTa11B.1.4250.002994
ORF3a44G44GggAggG11B.1.4270.00005
ORF3a44G44XGgaTga11B.1.4290.000024
ORF3a44G44GggAggG11B.1.4380.006536
ORF3a44G44EgGagAa11B.1.438.10.000107
ORF3a44G44EgGagAa11B.1.4680.005714
ORF3a44G44VgGagTa11B.1.4700.001404
ORF3a44G44VgGagTa11B.1.5050.004386
ORF3a44G44VgGagTa11B.1.5260.000024
ORF3a44G44GggAggC11B.1.5490.007194
ORF3a44G44GggAggC11B.1.5610.000397
ORF3a44G44AgGagCa11B.1.5650.00081
ORF3a44G44VgGagTa11B.1.5670.003333
ORF3a44G44RGgaAga11B.1.5820.000491
ORF3a44G44GggAggG11B.1.5950.000261
ORF3a44G44RGgaAga11B.1.5950.000261
ORF3a44G44delGGA---11B.1.5960.000087
ORF3a44G44RGgaAga11B.1.5960.000087
ORF3a44G44RGgaAga11B.1.617.10.000129
ORF3a44G44LGGaTTa11B.1.617.20.000004
ORF3a44G44XGgaTga11B.1.617.20.000004
ORF3a44G44RGgaAga11B.1.6190.000871
ORF3a44G44SGGaTCa11B.1.6210.000089
ORF3a44G44EgGagAa11B.1.6230.000536
ORF3a44G44VgGagTa11B.1.6250.002353
ORF3a44G44RGgaAga11B.1.6280.000352
ORF3a44G44AgGagCa11B.1.6300.005236
ORF3a44G44RGgaAga11B.1.6370.000073
ORF3a44G44XGgaTga11B.1.6370.000073
ORF3a44G44delGGA---11B.1.6380.052632
ORF3a44G44RGgaAga11B.1.9.40.006135
ORF3a44G44VgGagTa11B.1.9.50.005682
ORF3a44G44EgGagAa11B.30.000831
ORF3a44G44RGgaAga11B.3.10.001658
ORF3a44G44RGgaCga11B.390.002331
ORF3a44G44VgGagTa11B.610.005747
ORF3a44G44AgGagCa11C.1.20.004255
ORF3a44G44RGgaAga11C.260.007353
ORF3a44G44RGgaAga11C.36.30.000567
ORF3a44G44RGgaAga11C.370.000116
ORF3a44G44VgGagTa11C.370.000116
ORF3a44G44EgGagAa11C.37.10.002618
ORF3a44G44XGgaTga11D.20.000075
ORF3a44G44RGgaAga11D.20.000075
ORF3a44G44EgGagAa11P.10.000016
ORF3a44G44RGgaAga11P.1.100.000269
ORF3a44G44VgGagTa11P.1.10.10.00813
ORF3a44G44GggAggG11P.1.120.000484
ORF3a44G44AgGagCa11P.1.120.000484
ORF3a44G44RGgaAga11P.1.120.000484
ORF3a44G44delGGA---11P.1.140.000048
ORF3a44G44delGGA---11P.1.150.000232
ORF3a44G44RGgaAga11P.1.160.000374
ORF3a44G44VgGagTa11P.1.170.000162
ORF3a44G44VgGagTa11Q.10.000126
ORF3a44G44EgGagAa11Q.70.001111
ORF3a44G44VgGagTa11U.30.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.