CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 43 | F43F | syn | ttC | ttT | 21977 | 21977 | 1 | 25519-25521 | |
ORF3a | 43 | F43L | nonsyn | Ttc | Ctc | 1516 | 1167 | 0.769789 | 25519-25521 | |
ORF3a | 43 | F43L | nonsyn | ttC | ttA | 1516 | 215 | 0.141821 | 25519-25521 | |
ORF3a | 43 | F43L | nonsyn | ttC | ttG | 1516 | 117 | 0.0771768 | 25519-25521 | |
ORF3a | 43 | F43L | nonsyn | TtC | CtT | 1516 | 17 | 0.0112137 | 25519-25521 | |
ORF3a | 43 | F43del | del | TTC | --- | 1087 | 1087 | 1 | 25519-25521 | |
ORF3a | 43 | F43S | nonsyn | tTc | tCc | 540 | 538 | 0.996296 | 25519-25521 | |
ORF3a | 43 | F43S | nonsyn | tTC | tCT | 540 | 2 | 0.0037037 | 25519-25521 | |
ORF3a | 43 | F43V | nonsyn | Ttc | Gtc | 258 | 258 | 1 | 25519-25521 | |
ORF3a | 43 | F43C | nonsyn | tTc | tGc | 121 | 121 | 1 | 25519-25521 | |
ORF3a | 43 | F43Y | nonsyn | tTc | tAc | 43 | 42 | 0.976744 | 25519-25521 | |
ORF3a | 43 | F43Y | nonsyn | tTC | tAT | 43 | 1 | 0.0232558 | 25519-25521 | |
ORF3a | 43 | F43I | nonsyn | Ttc | Atc | 29 | 26 | 0.896552 | 25519-25521 | |
ORF3a | 43 | F43I | nonsyn | TtC | AtT | 29 | 3 | 0.103448 | 25519-25521 | |
ORF3a | 43 | F43del1 | del | Ttc | -tc | 25 | 17 | 0.68 | 25519-25521 | |
ORF3a | 43 | F43del1 | del | ttC | tt- | 25 | 8 | 0.32 | 25519-25521 | |
ORF3a | 43 | F43del2 | del | tTC | t-- | 9 | 4 | 0.444444 | 25519-25521 | |
ORF3a | 43 | F43del2 | del | TTc | --c | 9 | 3 | 0.333333 | 25519-25521 | |
ORF3a | 43 | F43del2 | del | TTC | --N | 9 | 2 | 0.222222 | 25519-25521 | |
ORF3a | 43 | F43R | nonsyn | TTC | CGG | 4 | 2 | 0.5 | 25519-25521 | |
ORF3a | 43 | F43R | nonsyn | TTc | CGc | 4 | 2 | 0.5 | 25519-25521 | |
ORF3a | 43 | F43X | nonsyn | tTC | tAG | 2 | 2 | 1 | 25519-25521 | |
ORF3a | 43 | F43Q | nonsyn | TTC | CAG | 2 | 2 | 1 | 25519-25521 | |
ORF3a | 43 | F43W | nonsyn | tTC | tGG | 2 | 2 | 1 | 25519-25521 | |
ORF3a | 43 | F43H | nonsyn | TTc | CAc | 2 | 2 | 1 | 25519-25521 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 43 | F43F | ttC | ttT | 21977 | 21977 | All | 0.004203 |
ORF3a | 43 | F43F | ttC | ttT | 2979 | 2979 | B.1.1.7 | 0.002667 |
ORF3a | 43 | F43F | ttC | ttT | 2575 | 2575 | AY.4 | 0.004008 |
ORF3a | 43 | F43F | ttC | ttT | 2390 | 2390 | AY.25 | 0.014375 |
ORF3a | 43 | F43L | Ttc | Ctc | 1167 | 1516 | All | 0.000223 |
ORF3a | 43 | F43L | ttC | ttA | 215 | 1516 | All | 0.000041 |
ORF3a | 43 | F43L | ttC | ttG | 117 | 1516 | All | 0.000022 |
ORF3a | 43 | F43L | TtC | CtT | 17 | 1516 | All | 0.000003 |
ORF3a | 43 | F43F | ttC | ttT | 1230 | 1230 | B.1.1.348 | 0.979299 |
ORF3a | 43 | F43del | TTC | --- | 1087 | 1087 | All | 0.000208 |
ORF3a | 43 | F43F | ttC | ttT | 830 | 830 | B.1.617.2 | 0.003125 |
ORF3a | 43 | F43F | ttC | ttT | 643 | 643 | B.1.561 | 0.25526 |
ORF3a | 43 | F43F | ttC | ttT | 584 | 584 | AY.43 | 0.002587 |
ORF3a | 43 | F43S | tTc | tCc | 538 | 540 | All | 0.000103 |
ORF3a | 43 | F43S | tTC | tCT | 2 | 540 | All | 0 |
ORF3a | 43 | F43F | ttC | ttT | 525 | 525 | B.1.427 | 0.026511 |
ORF3a | 43 | F43F | ttC | ttT | 464 | 464 | AY.44 | 0.002824 |
ORF3a | 43 | F43F | ttC | ttT | 464 | 464 | B.1.429 | 0.010917 |
ORF3a | 43 | F43F | ttC | ttT | 442 | 442 | B.1.2 | 0.003892 |
ORF3a | 43 | F43F | ttC | ttT | 440 | 440 | AY.3 | 0.004376 |
ORF3a | 43 | F43F | ttC | ttT | 386 | 386 | AY.103 | 0.002397 |
ORF3a | 43 | F43L | Ttc | Ctc | 361 | 376 | B.1.617.2 | 0.001359 |
ORF3a | 43 | F43L | ttC | ttA | 9 | 376 | B.1.617.2 | 0.000034 |
ORF3a | 43 | F43L | ttC | ttG | 5 | 376 | B.1.617.2 | 0.000019 |
ORF3a | 43 | F43L | TtC | CtT | 1 | 376 | B.1.617.2 | 0.000004 |
ORF3a | 43 | F43F | ttC | ttT | 347 | 347 | B.1 | 0.003178 |
ORF3a | 43 | F43F | ttC | ttT | 313 | 313 | B.1.1 | 0.005678 |
ORF3a | 43 | F43F | ttC | ttT | 292 | 292 | P.1 | 0.0046 |
ORF3a | 43 | F43F | ttC | ttT | 282 | 282 | AY.39 | 0.006969 |
ORF3a | 43 | F43F | ttC | ttT | 272 | 272 | AY.26 | 0.0077 |
ORF3a | 43 | F43V | Ttc | Gtc | 258 | 258 | All | 0.000049 |
ORF3a | 43 | F43L | Ttc | Ctc | 223 | 231 | AY.43 | 0.000988 |
ORF3a | 43 | F43L | ttC | ttG | 6 | 231 | AY.43 | 0.000027 |
ORF3a | 43 | F43L | ttC | ttA | 2 | 231 | AY.43 | 0.000009 |
ORF3a | 43 | F43V | Ttc | Gtc | 220 | 220 | B.1.177.2 | 1 |
ORF3a | 43 | F43F | ttC | ttT | 213 | 213 | AY.47 | 0.006625 |
ORF3a | 43 | F43F | ttC | ttT | 206 | 206 | B.1.177 | 0.002713 |
ORF3a | 43 | F43del | TTC | --- | 192 | 192 | AY.26 | 0.005436 |
ORF3a | 43 | F43F | ttC | ttT | 192 | 192 | B.1.1.519 | 0.007624 |
ORF3a | 43 | F43F | ttC | ttT | 180 | 180 | B.1.577 | 0.123711 |
ORF3a | 43 | F43L | Ttc | Ctc | 141 | 175 | AY.4 | 0.000219 |
ORF3a | 43 | F43L | ttC | ttA | 29 | 175 | AY.4 | 0.000045 |
ORF3a | 43 | F43L | ttC | ttG | 5 | 175 | AY.4 | 0.000008 |
ORF3a | 43 | F43F | ttC | ttT | 165 | 165 | B.1.596 | 0.014378 |
ORF3a | 43 | F43del | TTC | --- | 153 | 153 | B.1.630 | 0.801047 |
ORF3a | 43 | F43F | ttC | ttT | 149 | 149 | AY.120 | 0.00554 |
ORF3a | 43 | F43F | ttC | ttT | 143 | 143 | B.1.177.26 | 1 |
ORF3a | 43 | F43F | ttC | ttT | 142 | 142 | AY.39.1 | 0.005625 |
ORF3a | 43 | F43L | Ttc | Ctc | 95 | 135 | B.1.1.7 | 0.000085 |
ORF3a | 43 | F43L | ttC | ttA | 29 | 135 | B.1.1.7 | 0.000026 |
ORF3a | 43 | F43L | ttC | ttG | 10 | 135 | B.1.1.7 | 0.000009 |
ORF3a | 43 | F43L | TtC | CtT | 1 | 135 | B.1.1.7 | 0.000001 |
ORF3a | 43 | F43C | tTc | tGc | 121 | 121 | All | 0.000023 |
ORF3a | 43 | F43F | ttC | ttT | 115 | 115 | B.1.1.368 | 0.354938 |
ORF3a | 43 | F43F | ttC | ttT | 107 | 107 | AY.33 | 0.007145 |
ORF3a | 43 | F43F | ttC | ttT | 106 | 106 | AY.23 | 0.007393 |
ORF3a | 43 | F43F | ttC | ttT | 103 | 103 | B.1.1.214 | 0.005712 |
ORF3a | 43 | F43L | ttC | ttA | 71 | 102 | AY.44 | 0.000432 |
ORF3a | 43 | F43L | Ttc | Ctc | 28 | 102 | AY.44 | 0.00017 |
ORF3a | 43 | F43L | ttC | ttG | 3 | 102 | AY.44 | 0.000018 |
ORF3a | 43 | F43F | ttC | ttT | 100 | 100 | AY.102 | 0.002651 |
ORF3a | 43 | F43F | ttC | ttT | 100 | 100 | AY.5 | 0.002065 |
ORF3a | 43 | F43S | tTc | tCc | 99 | 100 | B.1.1.7 | 0.000089 |
ORF3a | 43 | F43S | tTC | tCT | 1 | 100 | B.1.1.7 | 0.000001 |
ORF3a | 43 | F43F | ttC | ttT | 91 | 91 | AY.98.1 | 0.004407 |
ORF3a | 43 | F43F | ttC | ttT | 87 | 87 | B.1.351 | 0.002586 |
ORF3a | 43 | F43del | TTC | --- | 86 | 86 | B.1.2 | 0.000757 |
ORF3a | 43 | F43F | ttC | ttT | 85 | 85 | AY.29 | 0.001341 |
ORF3a | 43 | F43L | Ttc | Ctc | 85 | 85 | AY.39 | 0.0021 |
ORF3a | 43 | F43F | ttC | ttT | 83 | 83 | AY.20 | 0.003226 |
ORF3a | 43 | F43F | ttC | ttT | 81 | 81 | B.1.160 | 0.002526 |
ORF3a | 43 | F43del | TTC | --- | 78 | 78 | AY.75 | 0.00437 |
ORF3a | 43 | F43F | ttC | ttT | 78 | 78 | B.1.1.157 | 0.071233 |
ORF3a | 43 | F43F | ttC | ttT | 76 | 76 | AY.42 | 0.003057 |
ORF3a | 43 | F43F | ttC | ttT | 75 | 75 | B.1.1.273 | 0.506757 |
ORF3a | 43 | F43F | ttC | ttT | 75 | 75 | B.1.406 | 0.454545 |
ORF3a | 43 | F43F | ttC | ttT | 71 | 71 | Q.7 | 0.078889 |
ORF3a | 43 | F43F | ttC | ttT | 69 | 69 | B.1.621 | 0.006108 |
ORF3a | 43 | F43F | ttC | ttT | 67 | 67 | AY.4.2 | 0.001453 |
ORF3a | 43 | F43F | ttC | ttT | 65 | 65 | AY.100 | 0.00299 |
ORF3a | 43 | F43F | ttC | ttT | 65 | 65 | AY.118 | 0.004072 |
ORF3a | 43 | F43F | ttC | ttT | 65 | 65 | R.1 | 0.005851 |
ORF3a | 43 | F43F | ttC | ttT | 60 | 60 | B.1.36.16 | 0.08547 |
ORF3a | 43 | F43del | TTC | --- | 58 | 58 | AY.43 | 0.000257 |
ORF3a | 43 | F43F | ttC | ttT | 57 | 57 | B.1.526 | 0.00134 |
ORF3a | 43 | F43F | ttC | ttT | 56 | 56 | AY.119 | 0.001977 |
ORF3a | 43 | F43del | TTC | --- | 55 | 55 | B.1.1.7 | 0.000049 |
ORF3a | 43 | F43F | ttC | ttT | 55 | 55 | B.1.36.31 | 0.096322 |
ORF3a | 43 | F43del | TTC | --- | 54 | 54 | B.1.177.82 | 0.025776 |
ORF3a | 43 | F43F | ttC | ttT | 53 | 53 | B.1.243 | 0.003688 |
ORF3a | 43 | F43L | ttC | ttG | 49 | 52 | AY.47 | 0.001524 |
ORF3a | 43 | F43L | Ttc | Ctc | 3 | 52 | AY.47 | 0.000093 |
ORF3a | 43 | F43F | ttC | ttT | 50 | 50 | A.2.5 | 0.02495 |
ORF3a | 43 | F43F | ttC | ttT | 50 | 50 | C.37 | 0.005803 |
ORF3a | 43 | F43F | ttC | ttT | 49 | 49 | B.1.177.82 | 0.023389 |
ORF3a | 43 | F43F | ttC | ttT | 46 | 46 | AY.24 | 0.019828 |
ORF3a | 43 | F43F | ttC | ttT | 46 | 46 | B.1.177.21 | 0.003518 |
ORF3a | 43 | F43F | ttC | ttT | 45 | 45 | AY.75 | 0.002521 |
ORF3a | 43 | F43C | tTc | tGc | 44 | 44 | B.1.438.1 | 0.00472 |
ORF3a | 43 | F43Y | tTc | tAc | 42 | 43 | All | 0.000008 |
ORF3a | 43 | F43Y | tTC | tAT | 1 | 43 | All | 0 |
ORF3a | 43 | F43F | ttC | ttT | 42 | 42 | AY.12 | 0.013274 |
ORF3a | 43 | F43del | TTC | --- | 42 | 42 | AY.4 | 0.000065 |
ORF3a | 43 | F43del | TTC | --- | 42 | 42 | AY.42 | 0.00169 |
ORF3a | 43 | F43F | ttC | ttT | 41 | 41 | AY.109 | 0.030325 |
ORF3a | 43 | F43F | ttC | ttT | 41 | 41 | D.2 | 0.003077 |
ORF3a | 43 | F43F | ttC | ttT | 40 | 40 | B.1.221 | 0.002841 |
ORF3a | 43 | F43F | ttC | ttT | 38 | 38 | AY.6 | 0.001563 |
ORF3a | 43 | F43F | ttC | ttT | 38 | 38 | B.1.258.11 | 0.015061 |
ORF3a | 43 | F43F | ttC | ttT | 37 | 37 | AY.45 | 0.004502 |
ORF3a | 43 | F43del | TTC | --- | 36 | 36 | B.1.177 | 0.000474 |
ORF3a | 43 | F43F | ttC | ttT | 35 | 35 | AY.61 | 0.003667 |
ORF3a | 43 | F43L | Ttc | Ctc | 34 | 34 | AY.42 | 0.001368 |
ORF3a | 43 | F43S | tTc | tCc | 34 | 34 | B.1.1.207 | 0.040189 |
ORF3a | 43 | F43F | ttC | ttT | 34 | 34 | B.1.234 | 0.004486 |
ORF3a | 43 | F43S | tTc | tCc | 34 | 34 | B.1.617.2 | 0.000128 |
ORF3a | 43 | F43S | tTc | tCc | 32 | 32 | AY.4 | 0.00005 |
ORF3a | 43 | F43F | ttC | ttT | 32 | 32 | AY.51 | 0.029091 |
ORF3a | 43 | F43F | ttC | ttT | 32 | 32 | B.1.1.434 | 0.011154 |
ORF3a | 43 | F43F | ttC | ttT | 32 | 32 | B.1.105 | 0.307692 |
ORF3a | 43 | F43F | ttC | ttT | 32 | 32 | B.1.36.29 | 0.016555 |
ORF3a | 43 | F43F | ttC | ttT | 32 | 32 | B.1.617.1 | 0.004127 |
ORF3a | 43 | F43F | ttC | ttT | 31 | 31 | AY.3.1 | 0.002643 |
ORF3a | 43 | F43F | ttC | ttT | 31 | 31 | B.1.416.1 | 0.048438 |
ORF3a | 43 | F43S | tTc | tCc | 30 | 30 | A | 0.01161 |
ORF3a | 43 | F43S | tTc | tCc | 30 | 30 | AY.3 | 0.000298 |
ORF3a | 43 | F43F | ttC | ttT | 30 | 30 | AY.9.2 | 0.001102 |
ORF3a | 43 | F43F | ttC | ttT | 30 | 30 | B.1.1.153 | 0.032859 |
ORF3a | 43 | F43F | ttC | ttT | 30 | 30 | B.1.258 | 0.001996 |
ORF3a | 43 | F43F | ttC | ttT | 30 | 30 | B.1.36 | 0.004377 |
ORF3a | 43 | F43F | ttC | ttT | 30 | 30 | B.1.400 | 0.01287 |
ORF3a | 43 | F43I | Ttc | Atc | 26 | 29 | All | 0.000005 |
ORF3a | 43 | F43I | TtC | AtT | 3 | 29 | All | 0.000001 |
ORF3a | 43 | F43F | ttC | ttT | 29 | 29 | AY.113 | 0.004129 |
ORF3a | 43 | F43L | Ttc | Ctc | 22 | 29 | P.1 | 0.000347 |
ORF3a | 43 | F43L | ttC | ttG | 6 | 29 | P.1 | 0.000095 |
ORF3a | 43 | F43L | TtC | CtT | 1 | 29 | P.1 | 0.000016 |
ORF3a | 43 | F43F | ttC | ttT | 28 | 28 | P.1.14 | 0.001338 |
ORF3a | 43 | F43F | ttC | ttT | 27 | 27 | AY.9 | 0.001825 |
ORF3a | 43 | F43F | ttC | ttT | 27 | 27 | B.1.311 | 0.007414 |
ORF3a | 43 | F43F | ttC | ttT | 26 | 26 | Q.1 | 0.003284 |
ORF3a | 43 | F43del1 | Ttc | -tc | 17 | 25 | All | 0.000003 |
ORF3a | 43 | F43del1 | ttC | tt- | 8 | 25 | All | 0.000002 |
ORF3a | 43 | F43F | ttC | ttT | 25 | 25 | AY.46.4 | 0.004113 |
ORF3a | 43 | F43F | ttC | ttT | 25 | 25 | B.1.525 | 0.002829 |
ORF3a | 43 | F43L | Ttc | Ctc | 24 | 24 | AY.46 | 0.002498 |
ORF3a | 43 | F43F | ttC | ttT | 24 | 24 | AY.5.4 | 0.006641 |
ORF3a | 43 | F43F | ttC | ttT | 24 | 24 | AY.98 | 0.001896 |
ORF3a | 43 | F43del | TTC | --- | 24 | 24 | B.1.1 | 0.000435 |
ORF3a | 43 | F43F | ttC | ttT | 23 | 23 | AY.27 | 0.001489 |
ORF3a | 43 | F43F | ttC | ttT | 23 | 23 | AY.30 | 0.009102 |
ORF3a | 43 | F43F | ttC | ttT | 23 | 23 | AY.54 | 0.002193 |
ORF3a | 43 | F43L | ttC | ttA | 23 | 23 | B.1.1.8 | 0.082437 |
ORF3a | 43 | F43F | ttC | ttT | 22 | 22 | AY.117 | 0.001859 |
ORF3a | 43 | F43F | ttC | ttT | 22 | 22 | AY.13 | 0.003542 |
ORF3a | 43 | F43S | tTc | tCc | 22 | 22 | AY.43 | 0.000097 |
ORF3a | 43 | F43F | ttC | ttT | 22 | 22 | B.1.1.192 | 0.050808 |
ORF3a | 43 | F43F | ttC | ttT | 22 | 22 | B.1.1.506 | 0.814815 |
ORF3a | 43 | F43del | TTC | --- | 21 | 21 | AY.25 | 0.000126 |
ORF3a | 43 | F43F | ttC | ttT | 21 | 21 | B.1.620 | 0.019868 |
ORF3a | 43 | F43F | ttC | ttT | 20 | 20 | A.5 | 0.038462 |
ORF3a | 43 | F43F | ttC | ttT | 20 | 20 | AY.36 | 0.002964 |
ORF3a | 43 | F43S | tTc | tCc | 20 | 20 | B.1.1.519 | 0.000794 |
ORF3a | 43 | F43del | TTC | --- | 20 | 20 | B.1.617.2 | 0.000075 |
ORF3a | 43 | F43F | ttC | ttT | 19 | 19 | AY.9.1 | 0.001591 |
ORF3a | 43 | F43F | ttC | ttT | 18 | 18 | AY.121 | 0.002436 |
ORF3a | 43 | F43F | ttC | ttT | 18 | 18 | AY.46.6 | 0.0013 |
ORF3a | 43 | F43F | ttC | ttT | 18 | 18 | AY.63 | 0.006963 |
ORF3a | 43 | F43S | tTc | tCc | 18 | 18 | B.1 | 0.000165 |
ORF3a | 43 | F43C | tTc | tGc | 16 | 16 | AY.29 | 0.000252 |
ORF3a | 43 | F43F | ttC | ttT | 16 | 16 | B.1.1.28 | 0.00498 |
ORF3a | 43 | F43F | ttC | ttT | 16 | 16 | B.1.206 | 0.013051 |
ORF3a | 43 | F43F | ttC | ttT | 16 | 16 | P.1.15 | 0.003717 |
ORF3a | 43 | F43F | ttC | ttT | 16 | 16 | P.2 | 0.002986 |
ORF3a | 43 | F43del | TTC | --- | 15 | 15 | AY.103 | 0.000093 |
ORF3a | 43 | F43L | Ttc | Ctc | 9 | 15 | AY.25 | 0.000054 |
ORF3a | 43 | F43L | TtC | CtT | 3 | 15 | AY.25 | 0.000018 |
ORF3a | 43 | F43L | ttC | ttG | 3 | 15 | AY.25 | 0.000018 |
ORF3a | 43 | F43del | TTC | --- | 15 | 15 | AY.4.2 | 0.000325 |
ORF3a | 43 | F43F | ttC | ttT | 15 | 15 | B.1.595 | 0.003914 |
ORF3a | 43 | F43F | ttC | ttT | 15 | 15 | N.5 | 0.026502 |
ORF3a | 43 | F43F | ttC | ttT | 14 | 14 | AY.34 | 0.001358 |
ORF3a | 43 | F43F | ttC | ttT | 14 | 14 | B | 0.001789 |
ORF3a | 43 | F43F | ttC | ttT | 14 | 14 | B.1.1.432 | 0.017722 |
ORF3a | 43 | F43F | ttC | ttT | 14 | 14 | B.1.177.57 | 0.003934 |
ORF3a | 43 | F43F | ttC | ttT | 14 | 14 | B.1.36.8 | 0.014 |
ORF3a | 43 | F43F | ttC | ttT | 14 | 14 | B.1.369 | 0.003993 |
ORF3a | 43 | F43S | tTc | tCc | 14 | 14 | B.1.497 | 0.004407 |
ORF3a | 43 | F43F | ttC | ttT | 14 | 14 | P.1.16 | 0.005238 |
ORF3a | 43 | F43F | ttC | ttT | 14 | 14 | P.1.7 | 0.00447 |
ORF3a | 43 | F43S | tTc | tCc | 13 | 13 | AY.25 | 0.000078 |
ORF3a | 43 | F43del | TTC | --- | 13 | 13 | AY.3 | 0.000129 |
ORF3a | 43 | F43F | ttC | ttT | 13 | 13 | AY.35 | 0.00303 |
ORF3a | 43 | F43F | ttC | ttT | 13 | 13 | AY.4.4 | 0.005319 |
ORF3a | 43 | F43F | ttC | ttT | 13 | 13 | AY.4.5 | 0.001397 |
ORF3a | 43 | F43L | ttC | ttG | 13 | 13 | AY.7 | 0.002548 |
ORF3a | 43 | F43F | ttC | ttT | 13 | 13 | AY.75.1 | 0.002344 |
ORF3a | 43 | F43del | TTC | --- | 13 | 13 | AY.98.1 | 0.00063 |
ORF3a | 43 | F43F | ttC | ttT | 13 | 13 | AY.99.2 | 0.001198 |
ORF3a | 43 | F43F | ttC | ttT | 13 | 13 | B.1.1.222 | 0.002652 |
ORF3a | 43 | F43F | ttC | ttT | 13 | 13 | B.1.36.22 | 0.0157 |
ORF3a | 43 | F43F | ttC | ttT | 13 | 13 | B.1.470 | 0.018258 |
ORF3a | 43 | F43F | ttC | ttT | 13 | 13 | XA | 0.288889 |
ORF3a | 43 | F43F | ttC | ttT | 12 | 12 | B.1.1.25 | 0.006822 |
ORF3a | 43 | F43F | ttC | ttT | 12 | 12 | B.1.549 | 0.086331 |
ORF3a | 43 | F43del1 | Ttc | -tc | 12 | 12 | P.1 | 0.000189 |
ORF3a | 43 | F43L | ttC | ttA | 7 | 11 | AY.102 | 0.000186 |
ORF3a | 43 | F43L | Ttc | Ctc | 3 | 11 | AY.102 | 0.00008 |
ORF3a | 43 | F43L | ttC | ttG | 1 | 11 | AY.102 | 0.000027 |
ORF3a | 43 | F43Y | tTc | tAc | 11 | 11 | AY.41 | 0.003233 |
ORF3a | 43 | F43F | ttC | ttT | 11 | 11 | AY.53 | 0.003163 |
ORF3a | 43 | F43S | tTc | tCc | 11 | 11 | B.1.1 | 0.0002 |
ORF3a | 43 | F43L | Ttc | Ctc | 11 | 11 | B.1.1.189 | 0.016641 |
ORF3a | 43 | F43F | ttC | ttT | 11 | 11 | B.1.1.307 | 0.027848 |
ORF3a | 43 | F43F | ttC | ttT | 11 | 11 | B.1.1.311 | 0.00394 |
ORF3a | 43 | F43S | tTc | tCc | 11 | 11 | B.1.1.434 | 0.003834 |
ORF3a | 43 | F43F | ttC | ttT | 11 | 11 | B.1.433 | 0.035144 |
ORF3a | 43 | F43F | ttC | ttT | 11 | 11 | B.1.438.1 | 0.00118 |
ORF3a | 43 | F43L | TtC | CtT | 11 | 11 | B.1.637 | 0.000804 |
ORF3a | 43 | F43del | TTC | --- | 10 | 10 | AY.44 | 0.000061 |
ORF3a | 43 | F43F | ttC | ttT | 10 | 10 | AY.64 | 0.005952 |
ORF3a | 43 | F43F | ttC | ttT | 10 | 10 | AY.77 | 0.011274 |
ORF3a | 43 | F43F | ttC | ttT | 10 | 10 | B.1.1.291 | 0.007424 |
ORF3a | 43 | F43F | ttC | ttT | 10 | 10 | B.1.1.70 | 0.003411 |
ORF3a | 43 | F43S | tTc | tCc | 10 | 10 | B.1.2 | 0.000088 |
ORF3a | 43 | F43S | tTc | tCc | 10 | 10 | B.1.427 | 0.000505 |
ORF3a | 43 | F43F | ttC | ttT | 10 | 10 | C.36.3 | 0.005672 |
ORF3a | 43 | F43L | Ttc | Ctc | 10 | 10 | P.6 | 0.031447 |
ORF3a | 43 | F43del2 | tTC | t-- | 4 | 9 | All | 0.000001 |
ORF3a | 43 | F43del2 | TTc | --c | 3 | 9 | All | 0.000001 |
ORF3a | 43 | F43del2 | TTC | --N | 2 | 9 | All | 0 |
ORF3a | 43 | F43F | ttC | ttT | 9 | 9 | AY.120.1 | 0.002889 |
ORF3a | 43 | F43F | ttC | ttT | 9 | 9 | AY.14 | 0.000792 |
ORF3a | 43 | F43F | ttC | ttT | 9 | 9 | AY.16 | 0.003417 |
ORF3a | 43 | F43F | ttC | ttT | 9 | 9 | AY.19 | 0.010262 |
ORF3a | 43 | F43L | Ttc | Ctc | 4 | 9 | AY.20 | 0.000155 |
ORF3a | 43 | F43L | ttC | ttA | 4 | 9 | AY.20 | 0.000155 |
ORF3a | 43 | F43L | ttC | ttG | 1 | 9 | AY.20 | 0.000039 |
ORF3a | 43 | F43S | tTc | tCc | 9 | 9 | AY.39 | 0.000222 |
ORF3a | 43 | F43F | ttC | ttT | 9 | 9 | AY.90 | 0.00616 |
ORF3a | 43 | F43L | Ttc | Ctc | 4 | 9 | B.1 | 0.000037 |
ORF3a | 43 | F43L | ttC | ttA | 3 | 9 | B.1 | 0.000027 |
ORF3a | 43 | F43L | ttC | ttG | 2 | 9 | B.1 | 0.000018 |
ORF3a | 43 | F43F | ttC | ttT | 9 | 9 | B.1.1.274 | 0.045455 |
ORF3a | 43 | F43F | ttC | ttT | 9 | 9 | B.1.1.372 | 0.006198 |
ORF3a | 43 | F43F | ttC | ttT | 9 | 9 | B.1.177.6 | 0.008789 |
ORF3a | 43 | F43F | ttC | ttT | 9 | 9 | B.1.177.86 | 0.001651 |
ORF3a | 43 | F43del | TTC | --- | 9 | 9 | B.1.258 | 0.000599 |
ORF3a | 43 | F43F | ttC | ttT | 9 | 9 | B.1.36.38 | 0.014778 |
ORF3a | 43 | F43F | ttC | ttT | 9 | 9 | B.1.597 | 0.041667 |
ORF3a | 43 | F43I | Ttc | Atc | 9 | 9 | B.40 | 0.003279 |
ORF3a | 43 | F43F | ttC | ttT | 9 | 9 | C.16 | 0.009544 |
ORF3a | 43 | F43F | ttC | ttT | 8 | 8 | AY.110 | 0.000902 |
ORF3a | 43 | F43S | tTc | tCc | 8 | 8 | AY.44 | 0.000049 |
ORF3a | 43 | F43F | ttC | ttT | 8 | 8 | AY.59 | 0.004237 |
ORF3a | 43 | F43F | ttC | ttT | 8 | 8 | AY.69 | 0.001493 |
ORF3a | 43 | F43F | ttC | ttT | 8 | 8 | AY.7.1 | 0.000902 |
ORF3a | 43 | F43F | ttC | ttT | 8 | 8 | AY.88 | 0.007073 |
ORF3a | 43 | F43V | Ttc | Gtc | 8 | 8 | B.1.1 | 0.000145 |
ORF3a | 43 | F43F | ttC | ttT | 8 | 8 | B.1.1.1 | 0.002614 |
ORF3a | 43 | F43F | ttC | ttT | 8 | 8 | B.1.1.189 | 0.012103 |
ORF3a | 43 | F43F | ttC | ttT | 8 | 8 | B.1.1.322 | 0.070175 |
ORF3a | 43 | F43F | ttC | ttT | 8 | 8 | B.1.1.33 | 0.003367 |
ORF3a | 43 | F43F | ttC | ttT | 8 | 8 | B.1.1.63 | 0.003086 |
ORF3a | 43 | F43C | tTc | tGc | 8 | 8 | B.1.1.7 | 0.000007 |
ORF3a | 43 | F43F | ttC | ttT | 8 | 8 | B.1.36.17 | 0.003953 |
ORF3a | 43 | F43F | ttC | ttT | 8 | 8 | B.1.499 | 0.008403 |
ORF3a | 43 | F43F | ttC | ttT | 8 | 8 | Q.8 | 0.001319 |
ORF3a | 43 | F43S | tTc | tCc | 7 | 7 | AY.103 | 0.000043 |
ORF3a | 43 | F43L | Ttc | Ctc | 4 | 7 | AY.103 | 0.000025 |
ORF3a | 43 | F43L | ttC | ttA | 3 | 7 | AY.103 | 0.000019 |
ORF3a | 43 | F43F | ttC | ttT | 7 | 7 | AY.106 | 0.002344 |
ORF3a | 43 | F43F | ttC | ttT | 7 | 7 | AY.116 | 0.002007 |
ORF3a | 43 | F43F | ttC | ttT | 7 | 7 | AY.2 | 0.002493 |
ORF3a | 43 | F43del | TTC | --- | 7 | 7 | AY.39 | 0.000173 |
ORF3a | 43 | F43F | ttC | ttT | 7 | 7 | AY.4.2.1 | 0.001043 |
ORF3a | 43 | F43F | ttC | ttT | 7 | 7 | AY.55 | 0.006422 |
ORF3a | 43 | F43F | ttC | ttT | 7 | 7 | AY.7 | 0.001372 |
ORF3a | 43 | F43F | ttC | ttT | 7 | 7 | AY.74 | 0.00081 |
ORF3a | 43 | F43F | ttC | ttT | 7 | 7 | B.1.1.231 | 0.021672 |
ORF3a | 43 | F43F | ttC | ttT | 7 | 7 | B.1.1.37 | 0.00135 |
ORF3a | 43 | F43Y | tTc | tAc | 7 | 7 | B.1.1.7 | 0.000006 |
ORF3a | 43 | F43F | ttC | ttT | 7 | 7 | B.1.177.12 | 0.001062 |
ORF3a | 43 | F43C | tTc | tGc | 7 | 7 | B.1.2 | 0.000062 |
ORF3a | 43 | F43S | tTc | tCc | 7 | 7 | B.1.239 | 0.008547 |
ORF3a | 43 | F43F | ttC | ttT | 7 | 7 | B.1.239 | 0.008547 |
ORF3a | 43 | F43S | tTc | tCc | 6 | 7 | B.1.466.2 | 0.002347 |
ORF3a | 43 | F43S | tTC | tCT | 1 | 7 | B.1.466.2 | 0.000391 |
ORF3a | 43 | F43S | tTc | tCc | 7 | 7 | B.1.575 | 0.002124 |
ORF3a | 43 | F43F | ttC | ttT | 7 | 7 | B.40 | 0.00255 |
ORF3a | 43 | F43F | ttC | ttT | 6 | 6 | AY.111 | 0.001099 |
ORF3a | 43 | F43L | Ttc | Ctc | 6 | 6 | AY.26 | 0.00017 |
ORF3a | 43 | F43F | ttC | ttT | 6 | 6 | AY.29.1 | 0.001323 |
ORF3a | 43 | F43F | ttC | ttT | 6 | 6 | AY.34.1 | 0.00306 |
ORF3a | 43 | F43C | tTc | tGc | 6 | 6 | AY.4 | 0.000009 |
ORF3a | 43 | F43C | tTc | tGc | 6 | 6 | AY.43 | 0.000027 |
ORF3a | 43 | F43L | Ttc | Ctc | 6 | 6 | AY.45 | 0.00073 |
ORF3a | 43 | F43F | ttC | ttT | 6 | 6 | AY.46 | 0.000624 |
ORF3a | 43 | F43F | ttC | ttT | 6 | 6 | AY.71 | 0.00285 |
ORF3a | 43 | F43F | ttC | ttT | 6 | 6 | AY.72 | 0.008163 |
ORF3a | 43 | F43C | tTc | tGc | 6 | 6 | AY.9 | 0.000406 |
ORF3a | 43 | F43del | TTC | --- | 6 | 6 | B.1 | 0.000055 |
ORF3a | 43 | F43L | Ttc | Ctc | 6 | 6 | B.1.1 | 0.000109 |
ORF3a | 43 | F43C | tTc | tGc | 6 | 6 | B.1.1.141 | 0.012072 |
ORF3a | 43 | F43F | ttC | ttT | 6 | 6 | B.1.1.220 | 0.011152 |
ORF3a | 43 | F43F | ttC | ttT | 6 | 6 | B.1.1.306 | 0.00263 |
ORF3a | 43 | F43F | ttC | ttT | 6 | 6 | B.1.1.312 | 0.011472 |
ORF3a | 43 | F43F | ttC | ttT | 6 | 6 | B.1.1.326 | 0.010563 |
ORF3a | 43 | F43F | ttC | ttT | 6 | 6 | B.1.1.420 | 0.006036 |
ORF3a | 43 | F43S | tTc | tCc | 6 | 6 | B.1.177 | 0.000079 |
ORF3a | 43 | F43F | ttC | ttT | 6 | 6 | B.1.177.4 | 0.001266 |
ORF3a | 43 | F43F | ttC | ttT | 6 | 6 | B.1.258.17 | 0.000624 |
ORF3a | 43 | F43F | ttC | ttT | 6 | 6 | B.1.367 | 0.004754 |
ORF3a | 43 | F43F | ttC | ttT | 6 | 6 | B.1.389 | 0.006012 |
ORF3a | 43 | F43F | ttC | ttT | 6 | 6 | B.1.409 | 0.004687 |
ORF3a | 43 | F43F | ttC | ttT | 6 | 6 | B.1.411 | 0.022222 |
ORF3a | 43 | F43S | tTc | tCc | 6 | 6 | B.1.441 | 0.057692 |
ORF3a | 43 | F43F | ttC | ttT | 6 | 6 | B.1.637 | 0.000438 |
ORF3a | 43 | F43F | ttC | ttT | 6 | 6 | P.1.12 | 0.002904 |
ORF3a | 43 | F43F | ttC | ttT | 6 | 6 | P.1.2 | 0.006936 |
ORF3a | 43 | F43F | ttC | ttT | 5 | 5 | A.1 | 0.001409 |
ORF3a | 43 | F43F | ttC | ttT | 5 | 5 | A.28 | 0.013228 |
ORF3a | 43 | F43F | ttC | ttT | 5 | 5 | AY.107 | 0.00233 |
ORF3a | 43 | F43F | ttC | ttT | 5 | 5 | AY.114 | 0.001156 |
ORF3a | 43 | F43F | ttC | ttT | 5 | 5 | AY.38 | 0.002496 |
ORF3a | 43 | F43del | TTC | --- | 5 | 5 | AY.39.1 | 0.000198 |
ORF3a | 43 | F43L | ttC | ttG | 4 | 5 | AY.39.1 | 0.000158 |
ORF3a | 43 | F43L | Ttc | Ctc | 1 | 5 | AY.39.1 | 0.00004 |
ORF3a | 43 | F43del | TTC | --- | 5 | 5 | AY.5 | 0.000103 |
ORF3a | 43 | F43L | ttC | ttA | 3 | 5 | AY.5 | 0.000062 |
ORF3a | 43 | F43L | Ttc | Ctc | 2 | 5 | AY.5 | 0.000041 |
ORF3a | 43 | F43F | ttC | ttT | 5 | 5 | AY.84 | 0.002187 |
ORF3a | 43 | F43L | Ttc | Ctc | 4 | 5 | AY.98.1 | 0.000194 |
ORF3a | 43 | F43L | ttC | ttA | 1 | 5 | AY.98.1 | 0.000048 |
ORF3a | 43 | F43F | ttC | ttT | 5 | 5 | B.1.1.170 | 0.006234 |
ORF3a | 43 | F43F | ttC | ttT | 5 | 5 | B.1.1.216 | 0.004452 |
ORF3a | 43 | F43F | ttC | ttT | 5 | 5 | B.1.1.269 | 0.006766 |
ORF3a | 43 | F43F | ttC | ttT | 5 | 5 | B.1.1.284 | 0.000537 |
ORF3a | 43 | F43F | ttC | ttT | 5 | 5 | B.1.1.318 | 0.001509 |
ORF3a | 43 | F43V | Ttc | Gtc | 5 | 5 | B.1.1.7 | 0.000004 |
ORF3a | 43 | F43F | ttC | ttT | 5 | 5 | B.1.177.44 | 0.002595 |
ORF3a | 43 | F43F | ttC | ttT | 5 | 5 | B.1.177.60 | 0.001092 |
ORF3a | 43 | F43F | ttC | ttT | 5 | 5 | B.1.177.67 | 0.038168 |
ORF3a | 43 | F43F | ttC | ttT | 5 | 5 | B.1.177.7 | 0.000824 |
ORF3a | 43 | F43F | ttC | ttT | 5 | 5 | B.1.177.81 | 0.000947 |
ORF3a | 43 | F43L | Ttc | Ctc | 3 | 5 | B.1.2 | 0.000026 |
ORF3a | 43 | F43L | ttC | ttG | 1 | 5 | B.1.2 | 0.000009 |
ORF3a | 43 | F43L | ttC | ttA | 1 | 5 | B.1.2 | 0.000009 |
ORF3a | 43 | F43F | ttC | ttT | 5 | 5 | B.1.240 | 0.001078 |
ORF3a | 43 | F43F | ttC | ttT | 5 | 5 | B.1.420 | 0.052083 |
ORF3a | 43 | F43del | TTC | --- | 5 | 5 | B.1.438.1 | 0.000536 |
ORF3a | 43 | F43F | ttC | ttT | 5 | 5 | B.1.541 | 0.022124 |
ORF3a | 43 | F43F | ttC | ttT | 5 | 5 | B.1.551 | 0.006452 |
ORF3a | 43 | F43R | TTC | CGG | 2 | 4 | 0.111111 | |
ORF3a | 43 | F43R | TTc | CGc | 2 | 4 | 0.111111 | |
ORF3a | 43 | F43F | ttC | ttT | 4 | 4 | A.2 | 0.002647 |
ORF3a | 43 | F43R | TTC | CGG | 2 | 4 | All | 0 |
ORF3a | 43 | F43R | TTc | CGc | 2 | 4 | All | 0 |
ORF3a | 43 | F43S | tTc | tCc | 4 | 4 | AY.102 | 0.000106 |
ORF3a | 43 | F43L | Ttc | Ctc | 4 | 4 | AY.119 | 0.000141 |
ORF3a | 43 | F43F | ttC | ttT | 4 | 4 | AY.16.1 | 0.00188 |
ORF3a | 43 | F43L | Ttc | Ctc | 3 | 4 | AY.3 | 0.00003 |
ORF3a | 43 | F43L | ttC | ttA | 1 | 4 | AY.3 | 0.00001 |
ORF3a | 43 | F43del1 | Ttc | -tc | 3 | 4 | AY.4 | 0.000005 |
ORF3a | 43 | F43del1 | ttC | tt- | 1 | 4 | AY.4 | 0.000002 |
ORF3a | 43 | F43F | ttC | ttT | 4 | 4 | AY.41 | 0.001176 |
ORF3a | 43 | F43F | ttC | ttT | 4 | 4 | AY.46.5 | 0.000794 |
ORF3a | 43 | F43F | ttC | ttT | 4 | 4 | AY.5.3 | 0.00135 |
ORF3a | 43 | F43F | ttC | ttT | 4 | 4 | AY.65 | 0.002132 |
ORF3a | 43 | F43F | ttC | ttT | 4 | 4 | AY.70 | 0.000834 |
ORF3a | 43 | F43del | TTC | --- | 4 | 4 | AY.98 | 0.000316 |
ORF3a | 43 | F43S | tTc | tCc | 4 | 4 | B.1.1.1 | 0.001307 |
ORF3a | 43 | F43L | Ttc | Ctc | 3 | 4 | B.1.1.214 | 0.000166 |
ORF3a | 43 | F43L | ttC | ttG | 1 | 4 | B.1.1.214 | 0.000055 |
ORF3a | 43 | F43F | ttC | ttT | 4 | 4 | B.1.1.282 | 0.046512 |
ORF3a | 43 | F43F | ttC | ttT | 4 | 4 | B.1.1.317 | 0.001647 |
ORF3a | 43 | F43F | ttC | ttT | 4 | 4 | B.1.1.397 | 0.009009 |
ORF3a | 43 | F43F | ttC | ttT | 4 | 4 | B.1.1.409 | 0.011331 |
ORF3a | 43 | F43F | ttC | ttT | 4 | 4 | B.1.1.486 | 0.006309 |
ORF3a | 43 | F43I | Ttc | Atc | 4 | 4 | B.1.1.7 | 0.000004 |
ORF3a | 43 | F43F | ttC | ttT | 4 | 4 | B.1.111 | 0.0047 |
ORF3a | 43 | F43L | Ttc | Ctc | 4 | 4 | B.1.177 | 0.000053 |
ORF3a | 43 | F43F | ttC | ttT | 4 | 4 | B.1.177.35 | 0.002764 |
ORF3a | 43 | F43F | ttC | ttT | 4 | 4 | B.1.177.58 | 0.005326 |
ORF3a | 43 | F43F | ttC | ttT | 4 | 4 | B.1.177.59 | 0.064516 |
ORF3a | 43 | F43F | ttC | ttT | 4 | 4 | B.1.177.80 | 0.007648 |
ORF3a | 43 | F43F | ttC | ttT | 4 | 4 | B.1.177.87 | 0.002911 |
ORF3a | 43 | F43F | ttC | ttT | 4 | 4 | B.1.199 | 0.016529 |
ORF3a | 43 | F43L | Ttc | Ctc | 4 | 4 | B.1.258 | 0.000266 |
ORF3a | 43 | F43F | ttC | ttT | 4 | 4 | B.1.279 | 0.002054 |
ORF3a | 43 | F43F | ttC | ttT | 4 | 4 | B.1.329 | 0.00243 |
ORF3a | 43 | F43S | tTc | tCc | 4 | 4 | B.1.351 | 0.000119 |
ORF3a | 43 | F43F | ttC | ttT | 4 | 4 | B.1.36.36 | 0.002408 |
ORF3a | 43 | F43F | ttC | ttT | 4 | 4 | B.1.509 | 0.003463 |
ORF3a | 43 | F43del | TTC | --- | 4 | 4 | B.1.526 | 0.000094 |
ORF3a | 43 | F43L | ttC | ttA | 4 | 4 | B.1.526 | 0.000094 |
ORF3a | 43 | F43F | ttC | ttT | 4 | 4 | B.1.575 | 0.001214 |
ORF3a | 43 | F43F | ttC | ttT | 4 | 4 | B.1.610 | 0.014184 |
ORF3a | 43 | F43F | ttC | ttT | 4 | 4 | B.1.618 | 0.016129 |
ORF3a | 43 | F43F | ttC | ttT | 4 | 4 | B.1.619 | 0.003484 |
ORF3a | 43 | F43F | ttC | ttT | 4 | 4 | B.3.1 | 0.006633 |
ORF3a | 43 | F43F | ttC | ttT | 4 | 4 | C.30 | 0.006908 |
ORF3a | 43 | F43del | TTC | --- | 4 | 4 | P.1.9 | 0.019231 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | AD.2 | 0.000657 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | AU.2 | 0.007264 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | AY.104 | 0.005952 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | AY.108 | 0.003308 |
ORF3a | 43 | F43S | tTc | tCc | 3 | 3 | AY.110 | 0.000338 |
ORF3a | 43 | F43S | tTc | tCc | 3 | 3 | AY.118 | 0.000188 |
ORF3a | 43 | F43del | TTC | --- | 3 | 3 | AY.118 | 0.000188 |
ORF3a | 43 | F43del | TTC | --- | 3 | 3 | AY.120 | 0.000112 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | AY.120.2 | 0.003856 |
ORF3a | 43 | F43L | ttC | ttA | 3 | 3 | AY.29 | 0.000047 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | AY.32 | 0.001597 |
ORF3a | 43 | F43L | ttC | ttA | 3 | 3 | AY.34 | 0.000291 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | AY.37 | 0.000948 |
ORF3a | 43 | F43I | Ttc | Atc | 3 | 3 | AY.4 | 0.000005 |
ORF3a | 43 | F43L | Ttc | Ctc | 3 | 3 | AY.4.2 | 0.000065 |
ORF3a | 43 | F43del | TTC | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF3a | 43 | F43del | TTC | --- | 3 | 3 | AY.40 | 0.002893 |
ORF3a | 43 | F43V | Ttc | Gtc | 3 | 3 | AY.44 | 0.000018 |
ORF3a | 43 | F43Y | tTc | tAc | 3 | 3 | AY.44 | 0.000018 |
ORF3a | 43 | F43del | TTC | --- | 3 | 3 | AY.45 | 0.000365 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | AY.46.2 | 0.001906 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | AY.52 | 0.002443 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | AY.67 | 0.001393 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | AY.73 | 0.001996 |
ORF3a | 43 | F43del2 | TTC | --N | 2 | 3 | AY.75 | 0.000112 |
ORF3a | 43 | F43del2 | TTc | --c | 1 | 3 | AY.75 | 0.000056 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | AY.79 | 0.003632 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | AY.8 | 0.001818 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | AY.80 | 0.003386 |
ORF3a | 43 | F43S | tTc | tCc | 3 | 3 | AY.9 | 0.000203 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | AY.93 | 0.000819 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | AY.94 | 0.001328 |
ORF3a | 43 | F43S | tTc | tCc | 3 | 3 | AY.99.2 | 0.000276 |
ORF3a | 43 | F43L | ttC | ttA | 3 | 3 | B.1.1.1 | 0.00098 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | B.1.1.12 | 0.022388 |
ORF3a | 43 | F43L | ttC | ttA | 3 | 3 | B.1.1.159 | 0.014019 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | B.1.1.174 | 0.010135 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | B.1.1.180 | 0.032258 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | B.1.1.186 | 0.010309 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | B.1.1.198 | 0.004405 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | B.1.1.241 | 0.006211 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | B.1.1.289 | 0.00625 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | B.1.1.316 | 0.002775 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | B.1.1.39 | 0.001529 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | B.1.1.41 | 0.018987 |
ORF3a | 43 | F43I | TtC | AtT | 3 | 3 | B.1.1.429 | 0.013825 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | B.1.1.462 | 0.025862 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | B.1.1.464 | 0.004418 |
ORF3a | 43 | F43Y | tTc | tAc | 3 | 3 | B.1.110 | 0.013575 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | B.1.128 | 0.001906 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | B.1.147 | 0.002268 |
ORF3a | 43 | F43del | TTC | --- | 3 | 3 | B.1.160.24 | 0.013274 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | B.1.177.43 | 0.004431 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | B.1.177.54 | 0.001819 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | B.1.177.55 | 0.006993 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | B.1.177.56 | 0.002003 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | B.1.177.65 | 0.001996 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | B.1.177.8 | 0.002257 |
ORF3a | 43 | F43L | Ttc | Ctc | 3 | 3 | B.1.234 | 0.000396 |
ORF3a | 43 | F43L | Ttc | Ctc | 2 | 3 | B.1.243 | 0.000139 |
ORF3a | 43 | F43L | ttC | ttG | 1 | 3 | B.1.243 | 0.00007 |
ORF3a | 43 | F43S | tTc | tCc | 3 | 3 | B.1.258 | 0.0002 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | B.1.258.7 | 0.005736 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | B.1.332 | 0.01049 |
ORF3a | 43 | F43del | TTC | --- | 3 | 3 | B.1.36.17 | 0.001482 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | B.1.36.18 | 0.001261 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | B.1.396 | 0.002117 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | B.1.404 | 0.003906 |
ORF3a | 43 | F43del | TTC | --- | 3 | 3 | B.1.427 | 0.000151 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | B.1.428 | 0.003061 |
ORF3a | 43 | F43S | tTc | tCc | 3 | 3 | B.1.429 | 0.000071 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | B.1.456 | 0.009804 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | B.1.466.2 | 0.001174 |
ORF3a | 43 | F43del1 | ttC | tt- | 3 | 3 | B.1.526 | 0.000071 |
ORF3a | 43 | F43S | tTc | tCc | 3 | 3 | B.1.564 | 0.001278 |
ORF3a | 43 | F43L | Ttc | Ctc | 3 | 3 | B.1.575 | 0.00091 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | B.1.582 | 0.001472 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | B.1.609 | 0.001438 |
ORF3a | 43 | F43L | Ttc | Ctc | 3 | 3 | B.1.617.1 | 0.000387 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | B.1.625 | 0.007059 |
ORF3a | 43 | F43del | TTC | --- | 3 | 3 | B.1.637 | 0.000219 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | B.1.93 | 0.002801 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | B.3 | 0.002492 |
ORF3a | 43 | F43S | tTc | tCc | 3 | 3 | C.14 | 0.012987 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | C.17 | 0.166667 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | C.36 | 0.002732 |
ORF3a | 43 | F43I | Ttc | Atc | 3 | 3 | P.1 | 0.000047 |
ORF3a | 43 | F43S | tTc | tCc | 3 | 3 | P.1 | 0.000047 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | P.1.10 | 0.000808 |
ORF3a | 43 | F43L | Ttc | Ctc | 3 | 3 | P.1.15 | 0.000697 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | P.1.17 | 0.000485 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | Q.3 | 0.000435 |
ORF3a | 43 | F43del | TTC | --- | 3 | 3 | U.3 | 0.011583 |
ORF3a | 43 | F43F | ttC | ttT | 3 | 3 | Z.1 | 0.008671 |
ORF3a | 43 | F43H | TTc | CAc | 2 | 2 | 0.111111 | |
ORF3a | 43 | F43Y | tTc | tAc | 2 | 2 | 0.111111 | |
ORF3a | 43 | F43C | tTc | tGc | 2 | 2 | 0.111111 | |
ORF3a | 43 | F43W | tTC | tGG | 2 | 2 | 0.111111 | |
ORF3a | 43 | F43X | tTC | tAG | 2 | 2 | 0.111111 | |
ORF3a | 43 | F43Q | TTC | CAG | 2 | 2 | 0.111111 | |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | A.2.5.2 | 0.003145 |
ORF3a | 43 | F43V | Ttc | Gtc | 2 | 2 | A.23.1 | 0.001408 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | AL.1 | 0.025974 |
ORF3a | 43 | F43X | tTC | tAG | 2 | 2 | All | 0 |
ORF3a | 43 | F43Q | TTC | CAG | 2 | 2 | All | 0 |
ORF3a | 43 | F43H | TTc | CAc | 2 | 2 | All | 0 |
ORF3a | 43 | F43W | tTC | tGG | 2 | 2 | All | 0 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | AY.10 | 0.00106 |
ORF3a | 43 | F43del | TTC | --- | 2 | 2 | AY.100 | 0.000092 |
ORF3a | 43 | F43C | tTc | tGc | 2 | 2 | AY.103 | 0.000012 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | AY.105 | 0.001286 |
ORF3a | 43 | F43del | TTC | --- | 2 | 2 | AY.13 | 0.000322 |
ORF3a | 43 | F43L | Ttc | Ctc | 2 | 2 | AY.16 | 0.000759 |
ORF3a | 43 | F43del | TTC | --- | 2 | 2 | AY.23 | 0.000139 |
ORF3a | 43 | F43C | tTc | tGc | 2 | 2 | AY.25 | 0.000012 |
ORF3a | 43 | F43S | tTc | tCc | 2 | 2 | AY.26 | 0.000057 |
ORF3a | 43 | F43del | TTC | --- | 2 | 2 | AY.29 | 0.000032 |
ORF3a | 43 | F43S | tTc | tCc | 2 | 2 | AY.29 | 0.000032 |
ORF3a | 43 | F43V | Ttc | Gtc | 2 | 2 | AY.29 | 0.000032 |
ORF3a | 43 | F43del | TTC | --- | 2 | 2 | AY.33 | 0.000134 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | AY.39.2 | 0.003082 |
ORF3a | 43 | F43Y | tTc | tAc | 2 | 2 | AY.4 | 0.000003 |
ORF3a | 43 | F43del2 | TTc | --c | 1 | 2 | AY.4 | 0.000002 |
ORF3a | 43 | F43del2 | tTC | t-- | 1 | 2 | AY.4 | 0.000002 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | AY.4.1 | 0.001475 |
ORF3a | 43 | F43S | tTc | tCc | 2 | 2 | AY.4.2 | 0.000043 |
ORF3a | 43 | F43V | Ttc | Gtc | 2 | 2 | AY.4.5 | 0.000215 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | AY.40 | 0.001929 |
ORF3a | 43 | F43I | Ttc | Atc | 2 | 2 | AY.44 | 0.000012 |
ORF3a | 43 | F43S | tTc | tCc | 2 | 2 | AY.45 | 0.000243 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | AY.46.1 | 0.002053 |
ORF3a | 43 | F43del | TTC | --- | 2 | 2 | AY.46.2 | 0.001271 |
ORF3a | 43 | F43C | tTc | tGc | 2 | 2 | AY.5 | 0.000041 |
ORF3a | 43 | F43del | TTC | --- | 2 | 2 | AY.6 | 0.000082 |
ORF3a | 43 | F43del | TTC | --- | 2 | 2 | AY.67 | 0.000929 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | AY.68 | 0.000547 |
ORF3a | 43 | F43C | tTc | tGc | 2 | 2 | AY.74 | 0.000231 |
ORF3a | 43 | F43L | Ttc | Ctc | 2 | 2 | AY.75.1 | 0.000361 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | AY.78 | 0.003082 |
ORF3a | 43 | F43del | TTC | --- | 2 | 2 | AY.81 | 0.003984 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | AY.82 | 0.002714 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | AY.85 | 0.000854 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | AY.87 | 0.001665 |
ORF3a | 43 | F43del | TTC | --- | 2 | 2 | AY.9.2 | 0.000073 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | AY.91 | 0.001461 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | AY.92 | 0.000575 |
ORF3a | 43 | F43S | tTc | tCc | 2 | 2 | AY.98 | 0.000158 |
ORF3a | 43 | F43Y | tTc | tAc | 2 | 2 | B.1 | 0.000018 |
ORF3a | 43 | F43V | Ttc | Gtc | 2 | 2 | B.1 | 0.000018 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.1.10 | 0.00223 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.1.171 | 0.007353 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.1.227 | 0.008696 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.1.244 | 0.030769 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.1.294 | 0.002532 |
ORF3a | 43 | F43S | tTc | tCc | 2 | 2 | B.1.1.305 | 0.007722 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.1.305 | 0.007722 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.1.362 | 0.011236 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.1.369 | 0.000892 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.1.376 | 0.011905 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.1.388 | 0.090909 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.1.417 | 0.005405 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.1.433 | 0.002849 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.1.46 | 0.008734 |
ORF3a | 43 | F43L | Ttc | Ctc | 2 | 2 | B.1.1.50 | 0.001358 |
ORF3a | 43 | F43del | TTC | --- | 2 | 2 | B.1.1.519 | 0.000079 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.1.525 | 0.010929 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.118 | 0.013423 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.126 | 0.002551 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.157 | 0.00597 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.160.24 | 0.00885 |
ORF3a | 43 | F43del | TTC | --- | 2 | 2 | B.1.160.33 | 0.00885 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.160.8 | 0.002577 |
ORF3a | 43 | F43V | Ttc | Gtc | 2 | 2 | B.1.177 | 0.000026 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.177.11 | 0.003396 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.177.20 | 0.003035 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.177.46 | 0.001837 |
ORF3a | 43 | F43del | TTC | --- | 2 | 2 | B.1.177.60 | 0.000437 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.177.63 | 0.005405 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.177.73 | 0.001133 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.189 | 0.008584 |
ORF3a | 43 | F43L | Ttc | Ctc | 2 | 2 | B.1.199 | 0.008264 |
ORF3a | 43 | F43I | Ttc | Atc | 2 | 2 | B.1.2 | 0.000018 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.210 | 0.004264 |
ORF3a | 43 | F43del | TTC | --- | 2 | 2 | B.1.221 | 0.000142 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.223 | 0.005556 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.23 | 0.012121 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.232 | 0.001075 |
ORF3a | 43 | F43S | tTc | tCc | 2 | 2 | B.1.234 | 0.000264 |
ORF3a | 43 | F43L | ttC | ttA | 1 | 2 | B.1.240 | 0.000216 |
ORF3a | 43 | F43L | Ttc | Ctc | 1 | 2 | B.1.240 | 0.000216 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.258.22 | 0.005333 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.258.3 | 0.00335 |
ORF3a | 43 | F43del | TTC | --- | 2 | 2 | B.1.258.4 | 0.006897 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.258.4 | 0.006897 |
ORF3a | 43 | F43L | ttC | ttA | 2 | 2 | B.1.264 | 0.024691 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.349 | 0.00143 |
ORF3a | 43 | F43L | Ttc | Ctc | 2 | 2 | B.1.350 | 0.005865 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.351.3 | 0.001753 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.356 | 0.003454 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.36.27 | 0.001527 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.362.2 | 0.009434 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.391 | 0.002255 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.398 | 0.005952 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.429.1 | 0.024096 |
ORF3a | 43 | F43del | TTC | --- | 2 | 2 | B.1.471 | 0.005464 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.471 | 0.005464 |
ORF3a | 43 | F43del | TTC | --- | 2 | 2 | B.1.525 | 0.000226 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.527 | 0.007407 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.537 | 0.04 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.538 | 0.016129 |
ORF3a | 43 | F43C | tTc | tGc | 2 | 2 | B.1.561 | 0.000794 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.574 | 0.004301 |
ORF3a | 43 | F43L | ttC | ttA | 2 | 2 | B.1.580 | 0.00813 |
ORF3a | 43 | F43C | tTc | tGc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.617.3 | 0.00597 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.619.1 | 0.001283 |
ORF3a | 43 | F43S | tTc | tCc | 2 | 2 | B.1.621 | 0.000177 |
ORF3a | 43 | F43del | TTC | --- | 2 | 2 | B.1.621 | 0.000177 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.628 | 0.000705 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.636 | 0.013423 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | B.1.9 | 0.012346 |
ORF3a | 43 | F43del | TTC | --- | 2 | 2 | D.2 | 0.00015 |
ORF3a | 43 | F43del | TTC | --- | 2 | 2 | P.1 | 0.000032 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | P.1.1 | 0.000635 |
ORF3a | 43 | F43del1 | ttC | tt- | 2 | 2 | P.1.1 | 0.000635 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | P.1.4 | 0.001953 |
ORF3a | 43 | F43F | ttC | ttT | 2 | 2 | P.3 | 0.00319 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | A | 0.000387 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | A.2.3 | 0.004739 |
ORF3a | 43 | F43L | ttC | ttA | 1 | 1 | A.2.5.2 | 0.001572 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | A.2.5.3 | 0.010309 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | A.23.1 | 0.000704 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | A.27 | 0.001656 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | A.3 | 0.002096 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | AA.7 | 0.009174 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | AE.2 | 0.058824 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | AH.3 | 0.003802 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | AT.1 | 0.005128 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | AY.1 | 0.000396 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | AY.1 | 0.000396 |
ORF3a | 43 | F43Y | tTc | tAc | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 43 | F43L | Ttc | Ctc | 1 | 1 | AY.101 | 0.00049 |
ORF3a | 43 | F43C | tTc | tGc | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 43 | F43C | tTc | tGc | 1 | 1 | AY.105 | 0.000643 |
ORF3a | 43 | F43L | Ttc | Ctc | 1 | 1 | AY.105 | 0.000643 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | AY.109 | 0.00074 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 43 | F43L | ttC | ttG | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | AY.114 | 0.000231 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | AY.116.1 | 0.000311 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 43 | F43L | Ttc | Ctc | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 43 | F43I | Ttc | Atc | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 43 | F43L | Ttc | Ctc | 1 | 1 | AY.13 | 0.000161 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | AY.14 | 0.000088 |
ORF3a | 43 | F43L | ttC | ttA | 1 | 1 | AY.16.1 | 0.00047 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 43 | F43Y | tTc | tAc | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 43 | F43V | Ttc | Gtc | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | AY.23.1 | 0.000417 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | AY.24 | 0.000431 |
ORF3a | 43 | F43del1 | ttC | tt- | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 43 | F43V | Ttc | Gtc | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | AY.27 | 0.000065 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | AY.28 | 0.00189 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | AY.28 | 0.00189 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | AY.29.1 | 0.000221 |
ORF3a | 43 | F43V | Ttc | Gtc | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 43 | F43L | Ttc | Ctc | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 43 | F43Y | tTc | tAc | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 43 | F43L | Ttc | Ctc | 1 | 1 | AY.34.1 | 0.00051 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | AY.35 | 0.000233 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | AY.38 | 0.000499 |
ORF3a | 43 | F43Y | tTc | tAc | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 43 | F43L | Ttc | Ctc | 1 | 1 | AY.39.2 | 0.001541 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | AY.4.3 | 0.000842 |
ORF3a | 43 | F43Y | tTc | tAc | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 43 | F43V | Ttc | Gtc | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 43 | F43Y | tTc | tAc | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 43 | F43V | Ttc | Gtc | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | AY.46.4 | 0.000165 |
ORF3a | 43 | F43V | Ttc | Gtc | 1 | 1 | AY.5 | 0.000021 |
ORF3a | 43 | F43L | Ttc | Ctc | 1 | 1 | AY.5.4 | 0.000277 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | AY.5.4 | 0.000277 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | AY.50 | 0.000799 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | AY.53 | 0.000288 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | AY.54 | 0.000095 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | AY.54 | 0.000095 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | AY.56 | 0.001605 |
ORF3a | 43 | F43L | Ttc | Ctc | 1 | 1 | AY.57 | 0.000656 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | AY.58 | 0.000907 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 43 | F43L | ttC | ttG | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | AY.60 | 0.000938 |
ORF3a | 43 | F43C | tTc | tGc | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 43 | F43L | Ttc | Ctc | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | AY.62 | 0.000436 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | AY.65 | 0.000533 |
ORF3a | 43 | F43V | Ttc | Gtc | 1 | 1 | AY.69 | 0.000187 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | AY.7 | 0.000196 |
ORF3a | 43 | F43L | ttC | ttG | 1 | 1 | AY.7.1 | 0.000113 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | AY.7.2 | 0.000559 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | AY.75 | 0.000056 |
ORF3a | 43 | F43V | Ttc | Gtc | 1 | 1 | AY.75.1 | 0.00018 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | AY.86 | 0.00083 |
ORF3a | 43 | F43L | Ttc | Ctc | 1 | 1 | AY.9.2 | 0.000037 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | AY.90 | 0.000684 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | AY.91 | 0.00073 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | AY.93 | 0.000273 |
ORF3a | 43 | F43L | Ttc | Ctc | 1 | 1 | AY.93 | 0.000273 |
ORF3a | 43 | F43L | ttC | ttG | 1 | 1 | AY.95 | 0.000761 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | AY.95 | 0.000761 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | AY.96 | 0.002075 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | AY.99 | 0.001049 |
ORF3a | 43 | F43L | Ttc | Ctc | 1 | 1 | AY.99 | 0.001049 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | AY.99.1 | 0.001553 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | AZ.3 | 0.00152 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | AZ.5 | 0.003509 |
ORF3a | 43 | F43V | Ttc | Gtc | 1 | 1 | B | 0.000128 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | B | 0.000128 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | B | 0.000128 |
ORF3a | 43 | F43I | Ttc | Atc | 1 | 1 | B.1 | 0.000009 |
ORF3a | 43 | F43C | tTc | tGc | 1 | 1 | B.1 | 0.000009 |
ORF3a | 43 | F43del2 | TTc | --c | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.115 | 0.008929 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.125 | 0.010204 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.130 | 0.015385 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.138 | 0.006061 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.139 | 0.022727 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.161 | 0.003534 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.165 | 0.015385 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.168 | 0.026316 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | B.1.1.189 | 0.001513 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.200 | 0.007463 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.204 | 0.00304 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | B.1.1.214 | 0.000055 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | B.1.1.214 | 0.000055 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.219 | 0.005 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | B.1.1.225 | 0.007194 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.243 | 0.004082 |
ORF3a | 43 | F43L | ttC | ttG | 1 | 1 | B.1.1.243 | 0.004082 |
ORF3a | 43 | F43L | ttC | ttA | 1 | 1 | B.1.1.25 | 0.000569 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.253 | 0.002506 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.255 | 0.00303 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.261 | 0.008621 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.265 | 0.003155 |
ORF3a | 43 | F43del2 | tTC | t-- | 1 | 1 | B.1.1.279 | 0.001121 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.279 | 0.001121 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | B.1.1.279 | 0.001121 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | B.1.1.28 | 0.000311 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | B.1.1.28 | 0.000311 |
ORF3a | 43 | F43C | tTc | tGc | 1 | 1 | B.1.1.285 | 0.006536 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.286 | 0.002899 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.288 | 0.001916 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | B.1.1.291 | 0.000742 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.3 | 0.008696 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.301 | 0.001179 |
ORF3a | 43 | F43L | ttC | ttA | 1 | 1 | B.1.1.306 | 0.000438 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | B.1.1.31 | 0.066667 |
ORF3a | 43 | F43Y | tTc | tAc | 1 | 1 | B.1.1.317 | 0.000412 |
ORF3a | 43 | F43V | Ttc | Gtc | 1 | 1 | B.1.1.317 | 0.000412 |
ORF3a | 43 | F43L | Ttc | Ctc | 1 | 1 | B.1.1.326 | 0.001761 |
ORF3a | 43 | F43L | Ttc | Ctc | 1 | 1 | B.1.1.33 | 0.000421 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.344 | 0.010753 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.363 | 0.005988 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.365 | 0.005587 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | B.1.1.37 | 0.000193 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.371 | 0.010417 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.374 | 0.002375 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.377 | 0.001381 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.378 | 0.007299 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.389 | 0.006061 |
ORF3a | 43 | F43Y | tTc | tAc | 1 | 1 | B.1.1.39 | 0.00051 |
ORF3a | 43 | F43C | tTc | tGc | 1 | 1 | B.1.1.39 | 0.00051 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.4 | 0.002976 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.407 | 0.041667 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.416 | 0.000905 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.429 | 0.004608 |
ORF3a | 43 | F43L | Ttc | Ctc | 1 | 1 | B.1.1.433 | 0.001425 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.442 | 0.018519 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.461 | 0.012048 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.47 | 0.005348 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.487 | 0.005587 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.517 | 0.006803 |
ORF3a | 43 | F43L | ttC | ttA | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.52 | 0.012195 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.521 | 0.005348 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.524 | 0.020833 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.54 | 0.003021 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.55 | 0.012987 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.57 | 0.011494 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.58 | 0.005376 |
ORF3a | 43 | F43del1 | Ttc | -tc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 43 | F43del2 | tTC | t-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.83 | 0.00271 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.1.89 | 0.006061 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | B.1.1.95 | 0.019608 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.104 | 0.00369 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.110.3 | 0.000718 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.13 | 0.002375 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.151 | 0.011111 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.160.16 | 0.000929 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.160.23 | 0.004831 |
ORF3a | 43 | F43V | Ttc | Gtc | 1 | 1 | B.1.160.23 | 0.004831 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.160.32 | 0.004292 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.160.33 | 0.004425 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.164 | 0.014925 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.177.16 | 0.000664 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.177.17 | 0.000821 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | B.1.177.18 | 0.00116 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.177.19 | 0.001431 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | B.1.177.23 | 0.003236 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.177.30 | 0.002513 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.177.33 | 0.001645 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.177.45 | 0.000381 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.177.5 | 0.001242 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.177.52 | 0.001757 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | B.1.177.72 | 0.00339 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | B.1.177.8 | 0.000752 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.177.83 | 0.001481 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.195 | 0.005025 |
ORF3a | 43 | F43del1 | Ttc | -tc | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.203 | 0.0625 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.214 | 0.003663 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.215 | 0.009615 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.220 | 0.01087 |
ORF3a | 43 | F43L | Ttc | Ctc | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 43 | F43L | Ttc | Ctc | 1 | 1 | B.1.232 | 0.000537 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.235 | 0.002519 |
ORF3a | 43 | F43L | Ttc | Ctc | 1 | 1 | B.1.235 | 0.002519 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.236 | 0.002053 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.237 | 0.004975 |
ORF3a | 43 | F43L | Ttc | Ctc | 1 | 1 | B.1.239 | 0.001221 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | B.1.241 | 0.000812 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.241 | 0.000812 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.247 | 0.014925 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.258.12 | 0.007874 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.258.14 | 0.00098 |
ORF3a | 43 | F43L | Ttc | Ctc | 1 | 1 | B.1.258.17 | 0.000104 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.258.24 | 0.010753 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.258.6 | 0.019608 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.265 | 0.001271 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.281 | 0.021739 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.293 | 0.0125 |
ORF3a | 43 | F43L | Ttc | Ctc | 1 | 1 | B.1.311 | 0.000275 |
ORF3a | 43 | F43L | Ttc | Ctc | 1 | 1 | B.1.319 | 0.003049 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.320 | 0.001245 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.335 | 0.010309 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.338 | 0.008621 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | B.1.346 | 0.001311 |
ORF3a | 43 | F43Y | tTc | tAc | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 43 | F43L | Ttc | Ctc | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | B.1.351.3 | 0.000876 |
ORF3a | 43 | F43L | Ttc | Ctc | 1 | 1 | B.1.351.5 | 0.0006 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.36.24 | 0.006173 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | B.1.36.24 | 0.006173 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.36.28 | 0.005747 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.36.37 | 0.002778 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.362.1 | 0.066667 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.375 | 0.00082 |
ORF3a | 43 | F43L | ttC | ttG | 1 | 1 | B.1.375 | 0.00082 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | B.1.400 | 0.000429 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.422 | 0.000812 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.424 | 0.008065 |
ORF3a | 43 | F43L | Ttc | Ctc | 1 | 1 | B.1.427 | 0.00005 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.428.2 | 0.033333 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.428.3 | 0.012821 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.434 | 0.052632 |
ORF3a | 43 | F43L | Ttc | Ctc | 1 | 1 | B.1.438.1 | 0.000107 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.459 | 0.004082 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.462 | 0.007246 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.465 | 0.003802 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.474 | 0.001901 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.503 | 0.002488 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.508 | 0.025641 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.513 | 0.013889 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | B.1.526 | 0.000024 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.532 | 0.006211 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.535 | 0.028571 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.542 | 0.03125 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.543 | 0.01 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.546 | 0.003704 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.555 | 0.022222 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.558 | 0.004566 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.560 | 0.00463 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.564 | 0.000426 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.567 | 0.003333 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.568 | 0.001111 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.575.1 | 0.002439 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | B.1.575.1 | 0.002439 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.588 | 0.00091 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.593 | 0.01087 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 43 | F43L | ttC | ttA | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.600 | 0.005848 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.602 | 0.006536 |
ORF3a | 43 | F43C | tTc | tGc | 1 | 1 | B.1.609 | 0.000479 |
ORF3a | 43 | F43Y | tTc | tAc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 43 | F43V | Ttc | Gtc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 43 | F43del1 | ttC | tt- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.627 | 0.00202 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.631 | 0.003367 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.70 | 0.02439 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.1.8 | 0.001972 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.31 | 0.003731 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.4 | 0.002208 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.41 | 0.008 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.52 | 0.010101 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.55 | 0.00295 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.6 | 0.00091 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | B.6.6 | 0.000889 |
ORF3a | 43 | F43L | Ttc | Ctc | 1 | 1 | B.6.6 | 0.000889 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | C.18 | 0.002591 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | C.19 | 0.027027 |
ORF3a | 43 | F43I | Ttc | Atc | 1 | 1 | C.36.3 | 0.000567 |
ORF3a | 43 | F43L | Ttc | Ctc | 1 | 1 | C.37 | 0.000116 |
ORF3a | 43 | F43Y | tTC | tAT | 1 | 1 | C.37 | 0.000116 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | C.37.1 | 0.002618 |
ORF3a | 43 | F43del2 | tTC | t-- | 1 | 1 | D.2 | 0.000075 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | D.3 | 0.005917 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | K.3 | 0.006173 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | N.4 | 0.004255 |
ORF3a | 43 | F43C | tTc | tGc | 1 | 1 | P.1 | 0.000016 |
ORF3a | 43 | F43Y | tTc | tAc | 1 | 1 | P.1 | 0.000016 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | P.1.12 | 0.000484 |
ORF3a | 43 | F43L | ttC | ttA | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 43 | F43S | tTc | tCc | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 43 | F43L | ttC | ttA | 1 | 1 | P.1.16 | 0.000374 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | P.1.16 | 0.000374 |
ORF3a | 43 | F43del | TTC | --- | 1 | 1 | P.1.6 | 0.001946 |
ORF3a | 43 | F43L | Ttc | Ctc | 1 | 1 | P.2 | 0.000187 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | P.4 | 0.003802 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | P.7 | 0.004367 |
ORF3a | 43 | F43L | Ttc | Ctc | 1 | 1 | Q.4 | 0.000455 |
ORF3a | 43 | F43F | ttC | ttT | 1 | 1 | Q.4 | 0.000455 |
ORF3a | 43 | F43Y | tTc | tAc | 1 | 1 | R.1 | 0.00009 |
ORF3a | 43 | F43L | Ttc | Ctc | 1 | 1 | W.3 | 0.005263 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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