CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 42 | P42L | nonsyn | cCt | cTt | 64133 | 64111 | 0.999657 | 25516-25518 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 42 | P42L | cCt | cTt | 64111 | 64133 | All | 0.012262 |
ORF3a | 42 | P42L | cCt | cTt | 41835 | 41852 | B.1.526 | 0.983312 |
ORF3a | 42 | P42L | cCt | cTt | 13412 | 13417 | B.1.637 | 0.980051 |
ORF3a | 42 | P42L | cCt | cTt | 2121 | 2121 | AY.103 | 0.013169 |
ORF3a | 42 | P42L | cCt | cTt | 1214 | 1214 | B.1 | 0.01112 |
ORF3a | 42 | P42L | cCt | cTt | 1060 | 1060 | AY.4 | 0.00165 |
ORF3a | 42 | P42L | cCt | cTt | 924 | 924 | B.1.1.7 | 0.000827 |
ORF3a | 42 | P42L | cCt | cTt | 316 | 316 | AY.25 | 0.001901 |
ORF3a | 42 | P42L | cCt | cTt | 224 | 224 | B.1.617.2 | 0.000843 |
ORF3a | 42 | P42L | cCt | cTt | 214 | 214 | AY.120 | 0.007956 |
ORF3a | 42 | P42L | cCt | cTt | 194 | 194 | AY.9.2 | 0.007126 |
ORF3a | 42 | P42L | cCt | cTt | 150 | 150 | B.1.1 | 0.002721 |
ORF3a | 42 | P42L | cCt | cTt | 144 | 144 | AY.3 | 0.001432 |
ORF3a | 42 | P42L | cCt | cTt | 118 | 118 | AY.26 | 0.003341 |
ORF3a | 42 | P42L | cCt | cTt | 107 | 107 | AY.43 | 0.000474 |
ORF3a | 42 | P42L | cCt | cTt | 99 | 99 | B.1.177 | 0.001304 |
ORF3a | 42 | P42L | cCt | cTt | 95 | 95 | AY.109 | 0.070266 |
ORF3a | 42 | P42L | cCt | cTt | 93 | 93 | AY.39 | 0.002298 |
ORF3a | 42 | P42L | cCt | cTt | 90 | 90 | AY.6 | 0.003702 |
ORF3a | 42 | P42L | cCt | cTt | 89 | 89 | B.1.2 | 0.000784 |
ORF3a | 42 | P42L | cCt | cTt | 88 | 88 | AY.29 | 0.001388 |
ORF3a | 42 | P42L | cCt | cTt | 73 | 73 | P.1 | 0.00115 |
ORF3a | 42 | P42L | cCt | cTt | 71 | 71 | B.1.561 | 0.028186 |
ORF3a | 42 | P42L | cCt | cTt | 50 | 50 | AY.119 | 0.001765 |
ORF3a | 42 | P42L | cCt | cTt | 46 | 46 | B.1.351 | 0.001367 |
ORF3a | 42 | P42L | cCt | cTt | 40 | 40 | A | 0.01548 |
ORF3a | 42 | P42L | cCt | cTt | 40 | 40 | AY.44 | 0.000243 |
ORF3a | 42 | P42L | cCt | cTt | 39 | 39 | B.1.623 | 0.020923 |
ORF3a | 42 | P42L | cCt | cTt | 38 | 38 | AY.99.2 | 0.003502 |
ORF3a | 42 | P42L | cCt | cTt | 36 | 36 | AY.20 | 0.001399 |
ORF3a | 42 | P42L | cCt | cTt | 36 | 36 | P.1.7 | 0.011494 |
ORF3a | 42 | P42L | cCt | cTt | 33 | 33 | AY.117 | 0.002789 |
ORF3a | 42 | P42L | cCt | cTt | 33 | 33 | B.1.346 | 0.04325 |
ORF3a | 42 | P42L | cCt | cTt | 27 | 27 | AY.101 | 0.013242 |
ORF3a | 42 | P42L | cCt | cTt | 27 | 27 | B.1.160 | 0.000842 |
ORF3a | 42 | P42L | cCt | cTt | 26 | 26 | AY.45 | 0.003164 |
ORF3a | 42 | P42L | cCt | cTt | 26 | 26 | B.1.177.32 | 0.035088 |
ORF3a | 42 | P42L | cCt | cTt | 25 | 25 | AY.4.2 | 0.000542 |
ORF3a | 42 | P42L | cCt | cTt | 25 | 25 | B | 0.003195 |
ORF3a | 42 | P42L | cCt | cTt | 25 | 25 | B.1.402 | 0.245098 |
ORF3a | 42 | P42L | cCt | cTt | 24 | 24 | B.1.177.73 | 0.01359 |
ORF3a | 42 | P42L | cCt | cTt | 22 | 22 | B.1.177.7 | 0.003627 |
ORF3a | 42 | P42L | cCt | cTt | 22 | 22 | B.1.429 | 0.000518 |
ORF3a | 42 | P42L | cCt | cTt | 21 | 21 | AY.34 | 0.002036 |
ORF3a | 42 | P42L | cCt | cTt | 21 | 21 | B.1.1.312 | 0.040153 |
ORF3a | 42 | P42L | cCt | cTt | 21 | 21 | B.1.264.1 | 1 |
ORF3a | 42 | P42L | cCt | cTt | 19 | 19 | B.1.1.507 | 0.165217 |
ORF3a | 42 | P42L | cCt | cTt | 18 | 18 | AY.35 | 0.004195 |
ORF3a | 42 | P42L | cCt | cTt | 16 | 16 | AY.116.1 | 0.004983 |
ORF3a | 42 | P42L | cCt | cTt | 15 | 15 | B.1.596 | 0.001307 |
ORF3a | 42 | P42L | cCt | cTt | 15 | 15 | P.1.17 | 0.002426 |
ORF3a | 42 | P42L | cCt | cTt | 14 | 14 | B.1.1.10 | 0.015608 |
ORF3a | 42 | P42L | cCt | cTt | 14 | 14 | B.1.240 | 0.003018 |
ORF3a | 42 | P42L | cCt | cTt | 14 | 14 | Q.1 | 0.001769 |
ORF3a | 42 | P42L | cCt | cTt | 13 | 13 | AY.100 | 0.000598 |
ORF3a | 42 | P42L | cCt | cTt | 13 | 13 | AY.47 | 0.000404 |
ORF3a | 42 | P42L | cCt | cTt | 12 | 12 | AY.102 | 0.000318 |
ORF3a | 42 | P42L | cCt | cTt | 12 | 12 | B.1.1.519 | 0.000477 |
ORF3a | 42 | P42L | cCt | cTt | 12 | 12 | B.1.466.2 | 0.004695 |
ORF3a | 42 | P42L | cCt | cTt | 11 | 11 | B.1.399 | 0.021277 |
ORF3a | 42 | P42L | cCt | cTt | 10 | 10 | AY.14 | 0.00088 |
ORF3a | 42 | P42L | cCt | cTt | 10 | 10 | AY.39.1 | 0.000396 |
ORF3a | 42 | P42L | cCt | cTt | 10 | 10 | AY.5.4 | 0.002767 |
ORF3a | 42 | P42L | cCt | cTt | 10 | 10 | C.37 | 0.001161 |
ORF3a | 42 | P42L | cCt | cTt | 10 | 10 | P.1.10 | 0.002695 |
ORF3a | 42 | P42L | cCt | cTt | 9 | 9 | AY.46.5 | 0.001786 |
ORF3a | 42 | P42L | cCt | cTt | 9 | 9 | AY.5 | 0.000186 |
ORF3a | 42 | P42L | cCt | cTt | 8 | 8 | B.1.110.3 | 0.005747 |
ORF3a | 42 | P42L | cCt | cTt | 8 | 8 | B.1.214.2 | 0.004796 |
ORF3a | 42 | P42L | cCt | cTt | 8 | 8 | B.1.621 | 0.000708 |
ORF3a | 42 | P42L | cCt | cTt | 8 | 8 | P.1.14 | 0.000382 |
ORF3a | 42 | P42L | cCt | cTt | 7 | 7 | AY.46 | 0.000729 |
ORF3a | 42 | P42L | cCt | cTt | 7 | 7 | B.1.1.39 | 0.003568 |
ORF3a | 42 | P42L | cCt | cTt | 7 | 7 | B.1.554 | 0.030837 |
ORF3a | 42 | P42L | cCt | cTt | 7 | 7 | B.1.617.1 | 0.000903 |
ORF3a | 42 | P42L | cCt | cTt | 6 | 6 | AY.62 | 0.002614 |
ORF3a | 42 | P42L | cCt | cTt | 6 | 6 | B.1.243 | 0.000418 |
ORF3a | 42 | P42L | cCt | cTt | 6 | 6 | B.1.625 | 0.014118 |
ORF3a | 42 | P42L | cCt | cTt | 6 | 6 | B.1.636 | 0.040268 |
ORF3a | 42 | P42L | cCt | cTt | 5 | 5 | AY.110 | 0.000563 |
ORF3a | 42 | P42L | cCt | cTt | 5 | 5 | AY.33 | 0.000334 |
ORF3a | 42 | P42L | cCt | cTt | 5 | 5 | B.1.1.220 | 0.009294 |
ORF3a | 42 | P42L | cCt | cTt | 5 | 5 | B.1.221 | 0.000355 |
ORF3a | 42 | P42L | cCt | cTt | 5 | 5 | B.1.427 | 0.000252 |
ORF3a | 42 | P42L | cCt | cTt | 5 | 5 | B.1.544 | 0.03012 |
ORF3a | 42 | P42L | cCt | cTt | 5 | 5 | P.2 | 0.000933 |
ORF3a | 42 | P42L | cCt | cTt | 5 | 5 | Q.8 | 0.000825 |
ORF3a | 42 | P42L | cCt | cTt | 4 | 4 | AD.2 | 0.000876 |
ORF3a | 42 | P42L | cCt | cTt | 4 | 4 | AY.118 | 0.000251 |
ORF3a | 42 | P42L | cCt | cTt | 4 | 4 | AY.121 | 0.000541 |
ORF3a | 42 | P42L | cCt | cTt | 4 | 4 | AY.23 | 0.000279 |
ORF3a | 42 | P42L | cCt | cTt | 4 | 4 | AY.55 | 0.00367 |
ORF3a | 42 | P42L | cCt | cTt | 4 | 4 | AY.75 | 0.000224 |
ORF3a | 42 | P42L | cCt | cTt | 4 | 4 | AY.85 | 0.001709 |
ORF3a | 42 | P42L | cCt | cTt | 4 | 4 | AY.98.1 | 0.000194 |
ORF3a | 42 | P42L | cCt | cTt | 4 | 4 | B.1.1.416 | 0.00362 |
ORF3a | 42 | P42L | cCt | cTt | 4 | 4 | B.1.177.42 | 0.003578 |
ORF3a | 42 | P42L | cCt | cTt | 4 | 4 | B.1.258.17 | 0.000416 |
ORF3a | 42 | P42L | cCt | cTt | 4 | 4 | B.1.36.7 | 0.016 |
ORF3a | 42 | P42L | cCt | cTt | 4 | 4 | B.1.618 | 0.016129 |
ORF3a | 42 | P42L | cCt | cTt | 4 | 4 | D.2 | 0.0003 |
ORF3a | 42 | P42L | cCt | cTt | 4 | 4 | N.6 | 0.028369 |
ORF3a | 42 | P42L | cCt | cTt | 4 | 4 | P.1.1 | 0.001271 |
ORF3a | 42 | P42L | cCt | cTt | 3 | 3 | AY.27 | 0.000194 |
ORF3a | 42 | P42L | cCt | cTt | 3 | 3 | AY.32 | 0.001597 |
ORF3a | 42 | P42L | cCt | cTt | 3 | 3 | AY.42 | 0.000121 |
ORF3a | 42 | P42L | cCt | cTt | 3 | 3 | AY.60 | 0.002814 |
ORF3a | 42 | P42L | cCt | cTt | 3 | 3 | AY.61 | 0.000314 |
ORF3a | 42 | P42L | cCt | cTt | 3 | 3 | B.1.1.316 | 0.002775 |
ORF3a | 42 | P42L | cCt | cTt | 3 | 3 | B.1.1.317 | 0.001235 |
ORF3a | 42 | P42L | cCt | cTt | 3 | 3 | B.1.1.63 | 0.001157 |
ORF3a | 42 | P42L | cCt | cTt | 3 | 3 | B.1.324 | 0.004815 |
ORF3a | 42 | P42L | cCt | cTt | 3 | 3 | B.1.533 | 0.028846 |
ORF3a | 42 | P42L | cCt | cTt | 3 | 3 | B.1.549 | 0.021583 |
ORF3a | 42 | P42L | cCt | cTt | 3 | 3 | B.1.575 | 0.00091 |
ORF3a | 42 | P42L | cCt | cTt | 3 | 3 | B.1.628 | 0.001057 |
ORF3a | 42 | P42L | cCt | cTt | 3 | 3 | B.40 | 0.001093 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | A.23.1 | 0.001408 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | AY.113 | 0.000285 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | AY.13 | 0.000322 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | AY.16.1 | 0.00094 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | AY.28 | 0.003781 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | AY.30 | 0.000791 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | AY.48 | 0.00093 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | AY.53 | 0.000575 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | AY.69 | 0.000373 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | AY.74 | 0.000231 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | AY.75.1 | 0.000361 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | AY.88 | 0.001768 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | AY.90 | 0.001369 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | AY.91 | 0.001461 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | AY.96 | 0.004149 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | AY.98 | 0.000158 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.1.222 | 0.000408 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.1.25 | 0.001137 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.1.273 | 0.013514 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.1.277 | 0.001517 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.1.307 | 0.005063 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.1.318 | 0.000604 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.1.369 | 0.000892 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.1.528 | 0.009615 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.214 | 0.007326 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.234 | 0.000264 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.235 | 0.005038 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.243.1 | 0.044444 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.280 | 0.014286 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.311 | 0.000549 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.336 | 0.004878 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.356 | 0.003454 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.36.18 | 0.00084 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.367 | 0.001585 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.369 | 0.00057 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.375 | 0.001639 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.413 | 0.008511 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.438.1 | 0.000215 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.576 | 0.001813 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.577 | 0.001375 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.635 | 0.035088 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.3.1 | 0.003317 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | P.1.15 | 0.000465 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AP.1 | 0.001502 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AT.1 | 0.005128 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.1 | 0.000396 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.10 | 0.00053 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.104 | 0.001984 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.105 | 0.000643 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.108 | 0.001103 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.114 | 0.000231 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.120.2 | 0.001285 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.16 | 0.00038 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.29.1 | 0.000221 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.3.1 | 0.000085 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.37 | 0.000316 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.46.2 | 0.000635 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.46.4 | 0.000165 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.46.6 | 0.000072 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.50 | 0.000799 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.54 | 0.000095 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.56 | 0.001605 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.73 | 0.000665 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.76 | 0.004831 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.78 | 0.001541 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.82 | 0.001357 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.89 | 0.004902 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.9 | 0.000068 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.9.1 | 0.000084 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.92 | 0.000287 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.95 | 0.000761 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.141 | 0.002012 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.176 | 0.000439 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.243 | 0.004082 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.266 | 0.012195 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.27 | 0.00565 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.279 | 0.001121 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.294 | 0.001266 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.301 | 0.001179 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.305 | 0.003861 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.308 | 0.011765 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.34 | 0.013158 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.354 | 0.004386 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.434 | 0.000349 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.44 | 0.00241 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.50 | 0.000679 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.523 | 0.001563 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.524 | 0.020833 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.89 | 0.006061 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.110 | 0.004525 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.128 | 0.000635 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.157 | 0.002985 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.160.23 | 0.004831 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.177.35 | 0.000691 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.177.57 | 0.000281 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.190 | 0.01 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.195 | 0.005025 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.237 | 0.004975 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.293 | 0.0125 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.320 | 0.001245 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.338 | 0.008621 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.350 | 0.002933 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.36 | 0.000146 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.36.38 | 0.001642 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.428 | 0.00102 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.436 | 0.001029 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.470 | 0.001404 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.497 | 0.000315 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.499 | 0.00105 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.524 | 0.001406 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.550 | 0.013699 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.551 | 0.00129 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.558 | 0.004566 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.565 | 0.00081 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.567 | 0.003333 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.568 | 0.001111 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.574 | 0.002151 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.580 | 0.004065 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.595 | 0.000261 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.638 | 0.052632 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.9 | 0.006173 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.4 | 0.002208 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.53 | 0.011765 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.55 | 0.00295 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | C.36.3 | 0.000567 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | P.1.12 | 0.000484 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | P.1.13 | 0.000898 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | P.1.4 | 0.000977 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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