CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 42 | P42L | nonsyn | cCt | cTt | 64133 | 64111 | 0.999657 | 25516-25518 | |
ORF3a | 42 | P42L | nonsyn | cCT | cTC | 64133 | 21 | 0.000327445 | 25516-25518 | |
ORF3a | 42 | P42L | nonsyn | cCT | cTA | 64133 | 1 | 0.0000155926 | 25516-25518 | |
ORF3a | 42 | P42H | nonsyn | cCt | cAt | 5056 | 5056 | 1 | 25516-25518 | |
ORF3a | 42 | P42P | syn | ccT | ccC | 4974 | 4683 | 0.941496 | 25516-25518 | |
ORF3a | 42 | P42P | syn | ccT | ccG | 4974 | 212 | 0.0426216 | 25516-25518 | |
ORF3a | 42 | P42P | syn | ccT | ccA | 4974 | 79 | 0.0158826 | 25516-25518 | |
ORF3a | 42 | P42S | nonsyn | Cct | Tct | 4964 | 4964 | 1 | 25516-25518 | |
ORF3a | 42 | P42del | del | CCT | --- | 997 | 997 | 1 | 25516-25518 | |
ORF3a | 42 | P42R | nonsyn | cCt | cGt | 220 | 220 | 1 | 25516-25518 | |
ORF3a | 42 | P42del1 | del | ccT | cc- | 180 | 179 | 0.994444 | 25516-25518 | |
ORF3a | 42 | P42del1 | del | Cct | -ct | 180 | 1 | 0.00555556 | 25516-25518 | |
ORF3a | 42 | P42T | nonsyn | Cct | Act | 75 | 75 | 1 | 25516-25518 | |
ORF3a | 42 | P42A | nonsyn | Cct | Gct | 54 | 54 | 1 | 25516-25518 | |
ORF3a | 42 | P42F | nonsyn | CCt | TTt | 12 | 12 | 1 | 25516-25518 | |
ORF3a | 42 | P42del2 | del | cCT | c-- | 6 | 5 | 0.833333 | 25516-25518 | |
ORF3a | 42 | P42del2 | del | CCT | --N | 6 | 1 | 0.166667 | 25516-25518 | |
ORF3a | 42 | P42Y | nonsyn | CCt | TAt | 1 | 1 | 1 | 25516-25518 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 42 | P42L | cCt | cTt | 64111 | 64133 | All | 0.012262 |
ORF3a | 42 | P42L | cCT | cTC | 21 | 64133 | All | 0.000004 |
ORF3a | 42 | P42L | cCT | cTA | 1 | 64133 | All | 0 |
ORF3a | 42 | P42L | cCt | cTt | 41835 | 41852 | B.1.526 | 0.983312 |
ORF3a | 42 | P42L | cCT | cTC | 16 | 41852 | B.1.526 | 0.000376 |
ORF3a | 42 | P42L | cCT | cTA | 1 | 41852 | B.1.526 | 0.000024 |
ORF3a | 42 | P42L | cCt | cTt | 13412 | 13417 | B.1.637 | 0.980051 |
ORF3a | 42 | P42L | cCT | cTC | 5 | 13417 | B.1.637 | 0.000365 |
ORF3a | 42 | P42H | cCt | cAt | 5056 | 5056 | All | 0.000967 |
ORF3a | 42 | P42P | ccT | ccC | 4683 | 4974 | All | 0.000896 |
ORF3a | 42 | P42P | ccT | ccG | 212 | 4974 | All | 0.000041 |
ORF3a | 42 | P42P | ccT | ccA | 79 | 4974 | All | 0.000015 |
ORF3a | 42 | P42S | Cct | Tct | 4964 | 4964 | All | 0.000949 |
ORF3a | 42 | P42H | cCt | cAt | 4630 | 4630 | B.1.1.7 | 0.004145 |
ORF3a | 42 | P42S | Cct | Tct | 2813 | 2813 | AY.12 | 0.889064 |
ORF3a | 42 | P42P | ccT | ccC | 2738 | 2742 | B.1.617.2 | 0.01031 |
ORF3a | 42 | P42P | ccT | ccG | 4 | 2742 | B.1.617.2 | 0.000015 |
ORF3a | 42 | P42L | cCt | cTt | 2121 | 2121 | AY.103 | 0.013169 |
ORF3a | 42 | P42L | cCt | cTt | 1214 | 1214 | B.1 | 0.01112 |
ORF3a | 42 | P42L | cCt | cTt | 1060 | 1060 | AY.4 | 0.00165 |
ORF3a | 42 | P42del | CCT | --- | 997 | 997 | All | 0.000191 |
ORF3a | 42 | P42L | cCt | cTt | 924 | 924 | B.1.1.7 | 0.000827 |
ORF3a | 42 | P42P | ccT | ccC | 785 | 785 | AY.102 | 0.020813 |
ORF3a | 42 | P42S | Cct | Tct | 600 | 600 | B.1.1.7 | 0.000537 |
ORF3a | 42 | P42L | cCt | cTt | 316 | 316 | AY.25 | 0.001901 |
ORF3a | 42 | P42P | ccT | ccC | 232 | 242 | B.1.1.7 | 0.000208 |
ORF3a | 42 | P42P | ccT | ccG | 5 | 242 | B.1.1.7 | 0.000004 |
ORF3a | 42 | P42P | ccT | ccA | 5 | 242 | B.1.1.7 | 0.000004 |
ORF3a | 42 | P42S | Cct | Tct | 234 | 234 | AY.4 | 0.000364 |
ORF3a | 42 | P42L | cCt | cTt | 224 | 224 | B.1.617.2 | 0.000843 |
ORF3a | 42 | P42R | cCt | cGt | 220 | 220 | All | 0.000042 |
ORF3a | 42 | P42L | cCt | cTt | 214 | 214 | AY.120 | 0.007956 |
ORF3a | 42 | P42L | cCt | cTt | 194 | 194 | AY.9.2 | 0.007126 |
ORF3a | 42 | P42del | CCT | --- | 192 | 192 | AY.26 | 0.005436 |
ORF3a | 42 | P42del1 | ccT | cc- | 179 | 180 | All | 0.000034 |
ORF3a | 42 | P42del1 | Cct | -ct | 1 | 180 | All | 0 |
ORF3a | 42 | P42del | CCT | --- | 153 | 153 | B.1.630 | 0.801047 |
ORF3a | 42 | P42L | cCt | cTt | 150 | 150 | B.1.1 | 0.002721 |
ORF3a | 42 | P42L | cCt | cTt | 144 | 144 | AY.3 | 0.001432 |
ORF3a | 42 | P42S | Cct | Tct | 135 | 135 | AY.43 | 0.000598 |
ORF3a | 42 | P42P | ccT | ccC | 71 | 131 | AY.44 | 0.000432 |
ORF3a | 42 | P42P | ccT | ccG | 58 | 131 | AY.44 | 0.000353 |
ORF3a | 42 | P42P | ccT | ccA | 2 | 131 | AY.44 | 0.000012 |
ORF3a | 42 | P42P | ccT | ccC | 124 | 124 | AY.39 | 0.003064 |
ORF3a | 42 | P42L | cCt | cTt | 118 | 118 | AY.26 | 0.003341 |
ORF3a | 42 | P42S | Cct | Tct | 117 | 117 | B.1.617.2 | 0.000441 |
ORF3a | 42 | P42del1 | ccT | cc- | 109 | 109 | B.1.617.3 | 0.325373 |
ORF3a | 42 | P42L | cCt | cTt | 107 | 107 | AY.43 | 0.000474 |
ORF3a | 42 | P42R | cCt | cGt | 106 | 106 | AY.4 | 0.000165 |
ORF3a | 42 | P42P | ccT | ccC | 99 | 102 | AY.43 | 0.000439 |
ORF3a | 42 | P42P | ccT | ccA | 2 | 102 | AY.43 | 0.000009 |
ORF3a | 42 | P42P | ccT | ccG | 1 | 102 | AY.43 | 0.000004 |
ORF3a | 42 | P42L | cCt | cTt | 99 | 99 | B.1.177 | 0.001304 |
ORF3a | 42 | P42L | cCt | cTt | 95 | 95 | AY.109 | 0.070266 |
ORF3a | 42 | P42H | cCt | cAt | 95 | 95 | B.1.1.528 | 0.456731 |
ORF3a | 42 | P42L | cCt | cTt | 93 | 93 | AY.39 | 0.002298 |
ORF3a | 42 | P42L | cCt | cTt | 90 | 90 | AY.6 | 0.003702 |
ORF3a | 42 | P42L | cCt | cTt | 89 | 89 | B.1.2 | 0.000784 |
ORF3a | 42 | P42L | cCt | cTt | 88 | 88 | AY.29 | 0.001388 |
ORF3a | 42 | P42H | cCt | cAt | 87 | 87 | AY.4 | 0.000135 |
ORF3a | 42 | P42del | CCT | --- | 87 | 87 | B.1.2 | 0.000766 |
ORF3a | 42 | P42S | Cct | Tct | 76 | 76 | AY.44 | 0.000463 |
ORF3a | 42 | P42T | Cct | Act | 75 | 75 | All | 0.000014 |
ORF3a | 42 | P42L | cCt | cTt | 73 | 73 | P.1 | 0.00115 |
ORF3a | 42 | P42L | cCt | cTt | 71 | 71 | B.1.561 | 0.028186 |
ORF3a | 42 | P42del | CCT | --- | 68 | 68 | AY.43 | 0.000301 |
ORF3a | 42 | P42S | Cct | Tct | 66 | 66 | AY.25 | 0.000397 |
ORF3a | 42 | P42R | cCt | cGt | 66 | 66 | B.1.177 | 0.000869 |
ORF3a | 42 | P42S | Cct | Tct | 61 | 61 | AY.103 | 0.000379 |
ORF3a | 42 | P42del | CCT | --- | 61 | 61 | B.1.1.7 | 0.000055 |
ORF3a | 42 | P42P | ccT | ccC | 59 | 59 | AY.106 | 0.019759 |
ORF3a | 42 | P42P | ccT | ccC | 58 | 58 | AY.117 | 0.004902 |
ORF3a | 42 | P42P | ccT | ccC | 58 | 58 | AY.34.1 | 0.029577 |
ORF3a | 42 | P42P | ccT | ccG | 51 | 57 | B.1 | 0.000467 |
ORF3a | 42 | P42P | ccT | ccC | 5 | 57 | B.1 | 0.000046 |
ORF3a | 42 | P42P | ccT | ccA | 1 | 57 | B.1 | 0.000009 |
ORF3a | 42 | P42S | Cct | Tct | 57 | 57 | B.1.427 | 0.002878 |
ORF3a | 42 | P42S | Cct | Tct | 55 | 55 | B.1.177 | 0.000724 |
ORF3a | 42 | P42A | Cct | Gct | 54 | 54 | All | 0.00001 |
ORF3a | 42 | P42del | CCT | --- | 54 | 54 | B.1.177.82 | 0.025776 |
ORF3a | 42 | P42L | cCt | cTt | 50 | 50 | AY.119 | 0.001765 |
ORF3a | 42 | P42P | ccT | ccG | 37 | 49 | AY.4 | 0.000058 |
ORF3a | 42 | P42P | ccT | ccC | 12 | 49 | AY.4 | 0.000019 |
ORF3a | 42 | P42S | Cct | Tct | 49 | 49 | B.1.2 | 0.000431 |
ORF3a | 42 | P42S | Cct | Tct | 47 | 47 | B.1 | 0.00043 |
ORF3a | 42 | P42H | cCt | cAt | 47 | 47 | B.1.177.35 | 0.032481 |
ORF3a | 42 | P42L | cCt | cTt | 46 | 46 | B.1.351 | 0.001367 |
ORF3a | 42 | P42S | Cct | Tct | 42 | 42 | AY.3 | 0.000418 |
ORF3a | 42 | P42del | CCT | --- | 42 | 42 | AY.42 | 0.00169 |
ORF3a | 42 | P42S | Cct | Tct | 42 | 42 | B.1.429 | 0.000988 |
ORF3a | 42 | P42L | cCt | cTt | 40 | 40 | A | 0.01548 |
ORF3a | 42 | P42L | cCt | cTt | 40 | 40 | AY.44 | 0.000243 |
ORF3a | 42 | P42L | cCt | cTt | 39 | 39 | B.1.623 | 0.020923 |
ORF3a | 42 | P42L | cCt | cTt | 38 | 38 | AY.99.2 | 0.003502 |
ORF3a | 42 | P42A | Cct | Gct | 37 | 37 | B.1.617.2 | 0.000139 |
ORF3a | 42 | P42L | cCt | cTt | 36 | 36 | AY.20 | 0.001399 |
ORF3a | 42 | P42del | CCT | --- | 36 | 36 | B.1.177 | 0.000474 |
ORF3a | 42 | P42L | cCt | cTt | 36 | 36 | P.1.7 | 0.011494 |
ORF3a | 42 | P42P | ccT | ccA | 35 | 35 | B.1.1.519 | 0.00139 |
ORF3a | 42 | P42P | ccT | ccC | 35 | 35 | B.1.258.11 | 0.013872 |
ORF3a | 42 | P42del | CCT | --- | 34 | 34 | AY.4 | 0.000053 |
ORF3a | 42 | P42L | cCt | cTt | 33 | 33 | AY.117 | 0.002789 |
ORF3a | 42 | P42S | Cct | Tct | 33 | 33 | AY.39 | 0.000815 |
ORF3a | 42 | P42S | Cct | Tct | 33 | 33 | AY.84 | 0.014436 |
ORF3a | 42 | P42L | cCt | cTt | 33 | 33 | B.1.346 | 0.04325 |
ORF3a | 42 | P42P | ccT | ccC | 32 | 32 | B.1.177 | 0.000421 |
ORF3a | 42 | P42S | Cct | Tct | 29 | 29 | B.1.160 | 0.000904 |
ORF3a | 42 | P42P | ccT | ccG | 29 | 29 | B.1.601 | 0.878788 |
ORF3a | 42 | P42L | cCt | cTt | 27 | 27 | AY.101 | 0.013242 |
ORF3a | 42 | P42L | cCt | cTt | 27 | 27 | B.1.160 | 0.000842 |
ORF3a | 42 | P42L | cCt | cTt | 26 | 26 | AY.45 | 0.003164 |
ORF3a | 42 | P42S | Cct | Tct | 26 | 26 | AY.61 | 0.002724 |
ORF3a | 42 | P42L | cCt | cTt | 26 | 26 | B.1.177.32 | 0.035088 |
ORF3a | 42 | P42del | CCT | --- | 26 | 26 | B.1.617.2 | 0.000098 |
ORF3a | 42 | P42L | cCt | cTt | 25 | 25 | AY.4.2 | 0.000542 |
ORF3a | 42 | P42L | cCt | cTt | 25 | 25 | B | 0.003195 |
ORF3a | 42 | P42L | cCt | cTt | 25 | 25 | B.1.402 | 0.245098 |
ORF3a | 42 | P42S | Cct | Tct | 25 | 25 | P.1 | 0.000394 |
ORF3a | 42 | P42S | Cct | Tct | 24 | 24 | AY.46.6 | 0.001733 |
ORF3a | 42 | P42T | Cct | Act | 24 | 24 | AY.9.1 | 0.002009 |
ORF3a | 42 | P42del | CCT | --- | 24 | 24 | B.1.1 | 0.000435 |
ORF3a | 42 | P42L | cCt | cTt | 24 | 24 | B.1.177.73 | 0.01359 |
ORF3a | 42 | P42S | Cct | Tct | 24 | 24 | B.1.221 | 0.001705 |
ORF3a | 42 | P42P | ccT | ccC | 23 | 23 | AY.120 | 0.000855 |
ORF3a | 42 | P42S | Cct | Tct | 22 | 22 | AY.5.3 | 0.007422 |
ORF3a | 42 | P42L | cCt | cTt | 22 | 22 | B.1.177.7 | 0.003627 |
ORF3a | 42 | P42L | cCt | cTt | 22 | 22 | B.1.429 | 0.000518 |
ORF3a | 42 | P42H | cCt | cAt | 21 | 21 | AY.25 | 0.000126 |
ORF3a | 42 | P42L | cCt | cTt | 21 | 21 | AY.34 | 0.002036 |
ORF3a | 42 | P42L | cCt | cTt | 21 | 21 | B.1.1.312 | 0.040153 |
ORF3a | 42 | P42L | cCt | cTt | 21 | 21 | B.1.264.1 | 1 |
ORF3a | 42 | P42S | Cct | Tct | 21 | 21 | B.1.621 | 0.001859 |
ORF3a | 42 | P42P | ccT | ccC | 17 | 20 | AY.103 | 0.000106 |
ORF3a | 42 | P42P | ccT | ccA | 3 | 20 | AY.103 | 0.000019 |
ORF3a | 42 | P42H | cCt | cAt | 20 | 20 | B.1.2 | 0.000176 |
ORF3a | 42 | P42del | CCT | --- | 19 | 19 | AY.25 | 0.000114 |
ORF3a | 42 | P42P | ccT | ccA | 14 | 19 | AY.25 | 0.000084 |
ORF3a | 42 | P42P | ccT | ccC | 4 | 19 | AY.25 | 0.000024 |
ORF3a | 42 | P42P | ccT | ccG | 1 | 19 | AY.25 | 0.000006 |
ORF3a | 42 | P42L | cCt | cTt | 19 | 19 | B.1.1.507 | 0.165217 |
ORF3a | 42 | P42L | cCt | cTt | 18 | 18 | AY.35 | 0.004195 |
ORF3a | 42 | P42P | ccT | ccC | 17 | 17 | AY.46 | 0.001769 |
ORF3a | 42 | P42L | cCt | cTt | 16 | 16 | AY.116.1 | 0.004983 |
ORF3a | 42 | P42S | Cct | Tct | 16 | 16 | AY.26 | 0.000453 |
ORF3a | 42 | P42P | ccT | ccC | 16 | 16 | AY.59 | 0.008475 |
ORF3a | 42 | P42H | cCt | cAt | 16 | 16 | B.1.617.2 | 0.00006 |
ORF3a | 42 | P42P | ccT | ccC | 15 | 15 | AY.77 | 0.016911 |
ORF3a | 42 | P42L | cCt | cTt | 15 | 15 | B.1.596 | 0.001307 |
ORF3a | 42 | P42del | CCT | --- | 15 | 15 | B.1.637 | 0.001096 |
ORF3a | 42 | P42del | CCT | --- | 15 | 15 | P.1 | 0.000236 |
ORF3a | 42 | P42L | cCt | cTt | 15 | 15 | P.1.17 | 0.002426 |
ORF3a | 42 | P42S | Cct | Tct | 14 | 14 | AY.119 | 0.000494 |
ORF3a | 42 | P42P | ccT | ccC | 14 | 14 | AY.45 | 0.001704 |
ORF3a | 42 | P42P | ccT | ccC | 14 | 14 | AY.73 | 0.009315 |
ORF3a | 42 | P42L | cCt | cTt | 14 | 14 | B.1.1.10 | 0.015608 |
ORF3a | 42 | P42H | cCt | cAt | 14 | 14 | B.1.177 | 0.000184 |
ORF3a | 42 | P42P | ccT | ccC | 13 | 14 | B.1.2 | 0.000114 |
ORF3a | 42 | P42P | ccT | ccG | 1 | 14 | B.1.2 | 0.000009 |
ORF3a | 42 | P42L | cCt | cTt | 14 | 14 | B.1.240 | 0.003018 |
ORF3a | 42 | P42S | Cct | Tct | 14 | 14 | B.1.409 | 0.010937 |
ORF3a | 42 | P42L | cCt | cTt | 14 | 14 | Q.1 | 0.001769 |
ORF3a | 42 | P42L | cCt | cTt | 13 | 13 | AY.100 | 0.000598 |
ORF3a | 42 | P42S | Cct | Tct | 13 | 13 | AY.102 | 0.000345 |
ORF3a | 42 | P42P | ccT | ccC | 13 | 13 | AY.23 | 0.000907 |
ORF3a | 42 | P42P | ccT | ccC | 13 | 13 | AY.33 | 0.000868 |
ORF3a | 42 | P42S | Cct | Tct | 13 | 13 | AY.39.1 | 0.000515 |
ORF3a | 42 | P42L | cCt | cTt | 13 | 13 | AY.47 | 0.000404 |
ORF3a | 42 | P42del | CCT | --- | 13 | 13 | AY.98.1 | 0.00063 |
ORF3a | 42 | P42S | Cct | Tct | 13 | 13 | B.1.621.1 | 0.006576 |
ORF3a | 42 | P42F | CCt | TTt | 12 | 12 | All | 0.000002 |
ORF3a | 42 | P42L | cCt | cTt | 12 | 12 | AY.102 | 0.000318 |
ORF3a | 42 | P42P | ccT | ccC | 12 | 12 | AY.111 | 0.002198 |
ORF3a | 42 | P42P | ccT | ccC | 12 | 12 | AY.116 | 0.003441 |
ORF3a | 42 | P42P | ccT | ccG | 12 | 12 | B.1.1.33 | 0.005051 |
ORF3a | 42 | P42L | cCt | cTt | 12 | 12 | B.1.1.519 | 0.000477 |
ORF3a | 42 | P42L | cCt | cTt | 12 | 12 | B.1.466.2 | 0.004695 |
ORF3a | 42 | P42del1 | ccT | cc- | 11 | 11 | AY.4 | 0.000017 |
ORF3a | 42 | P42P | ccT | ccC | 11 | 11 | AY.98 | 0.000869 |
ORF3a | 42 | P42H | cCt | cAt | 11 | 11 | AY.99.2 | 0.001014 |
ORF3a | 42 | P42L | cCt | cTt | 11 | 11 | B.1.399 | 0.021277 |
ORF3a | 42 | P42R | cCt | cGt | 11 | 11 | B.1.637 | 0.000804 |
ORF3a | 42 | P42L | cCt | cTt | 10 | 10 | AY.14 | 0.00088 |
ORF3a | 42 | P42del | CCT | --- | 10 | 10 | AY.3 | 0.000099 |
ORF3a | 42 | P42L | cCt | cTt | 10 | 10 | AY.39.1 | 0.000396 |
ORF3a | 42 | P42P | ccT | ccC | 10 | 10 | AY.5 | 0.000206 |
ORF3a | 42 | P42L | cCt | cTt | 10 | 10 | AY.5.4 | 0.002767 |
ORF3a | 42 | P42H | cCt | cAt | 10 | 10 | B.1.258.17 | 0.00104 |
ORF3a | 42 | P42L | cCt | cTt | 10 | 10 | C.37 | 0.001161 |
ORF3a | 42 | P42L | cCt | cTt | 10 | 10 | P.1.10 | 0.002695 |
ORF3a | 42 | P42R | cCt | cGt | 9 | 9 | AY.117 | 0.000761 |
ORF3a | 42 | P42S | Cct | Tct | 9 | 9 | AY.34 | 0.000873 |
ORF3a | 42 | P42L | cCt | cTt | 9 | 9 | AY.46.5 | 0.001786 |
ORF3a | 42 | P42L | cCt | cTt | 9 | 9 | AY.5 | 0.000186 |
ORF3a | 42 | P42del | CCT | --- | 9 | 9 | B.1.258 | 0.000599 |
ORF3a | 42 | P42del1 | ccT | cc- | 9 | 9 | P.1.1 | 0.002859 |
ORF3a | 42 | P42P | ccT | ccC | 8 | 8 | AY.120.1 | 0.002568 |
ORF3a | 42 | P42P | ccT | ccC | 8 | 8 | AY.6 | 0.000329 |
ORF3a | 42 | P42L | cCt | cTt | 8 | 8 | B.1.110.3 | 0.005747 |
ORF3a | 42 | P42H | cCt | cAt | 8 | 8 | B.1.160 | 0.00025 |
ORF3a | 42 | P42L | cCt | cTt | 8 | 8 | B.1.214.2 | 0.004796 |
ORF3a | 42 | P42S | Cct | Tct | 8 | 8 | B.1.258.17 | 0.000832 |
ORF3a | 42 | P42S | Cct | Tct | 8 | 8 | B.1.36.1 | 0.009122 |
ORF3a | 42 | P42S | Cct | Tct | 8 | 8 | B.1.36.8 | 0.008 |
ORF3a | 42 | P42F | CCt | TTt | 8 | 8 | B.1.526 | 0.000188 |
ORF3a | 42 | P42L | cCt | cTt | 8 | 8 | B.1.621 | 0.000708 |
ORF3a | 42 | P42L | cCt | cTt | 8 | 8 | P.1.14 | 0.000382 |
ORF3a | 42 | P42del | CCT | --- | 7 | 7 | AY.103 | 0.000043 |
ORF3a | 42 | P42del | CCT | --- | 7 | 7 | AY.39 | 0.000173 |
ORF3a | 42 | P42T | Cct | Act | 7 | 7 | AY.43 | 0.000031 |
ORF3a | 42 | P42L | cCt | cTt | 7 | 7 | AY.46 | 0.000729 |
ORF3a | 42 | P42H | cCt | cAt | 7 | 7 | AY.47 | 0.000218 |
ORF3a | 42 | P42P | ccT | ccC | 7 | 7 | AY.84 | 0.003062 |
ORF3a | 42 | P42L | cCt | cTt | 7 | 7 | B.1.1.39 | 0.003568 |
ORF3a | 42 | P42P | ccT | ccC | 7 | 7 | B.1.177.75 | 0.007284 |
ORF3a | 42 | P42L | cCt | cTt | 7 | 7 | B.1.554 | 0.030837 |
ORF3a | 42 | P42L | cCt | cTt | 7 | 7 | B.1.617.1 | 0.000903 |
ORF3a | 42 | P42S | Cct | Tct | 7 | 7 | B.1.617.1 | 0.000903 |
ORF3a | 42 | P42del2 | cCT | c-- | 5 | 6 | All | 0.000001 |
ORF3a | 42 | P42del2 | CCT | --N | 1 | 6 | All | 0 |
ORF3a | 42 | P42S | Cct | Tct | 6 | 6 | AY.120 | 0.000223 |
ORF3a | 42 | P42H | cCt | cAt | 6 | 6 | AY.39 | 0.000148 |
ORF3a | 42 | P42H | cCt | cAt | 6 | 6 | AY.4.2.1 | 0.000894 |
ORF3a | 42 | P42S | Cct | Tct | 6 | 6 | AY.4.5 | 0.000645 |
ORF3a | 42 | P42H | cCt | cAt | 6 | 6 | AY.43 | 0.000027 |
ORF3a | 42 | P42H | cCt | cAt | 6 | 6 | AY.44 | 0.000037 |
ORF3a | 42 | P42del | CCT | --- | 6 | 6 | AY.44 | 0.000037 |
ORF3a | 42 | P42L | cCt | cTt | 6 | 6 | AY.62 | 0.002614 |
ORF3a | 42 | P42S | Cct | Tct | 6 | 6 | AY.74 | 0.000694 |
ORF3a | 42 | P42H | cCt | cAt | 6 | 6 | B.1 | 0.000055 |
ORF3a | 42 | P42P | ccT | ccC | 6 | 6 | B.1.1.222 | 0.001224 |
ORF3a | 42 | P42L | cCt | cTt | 6 | 6 | B.1.243 | 0.000418 |
ORF3a | 42 | P42L | cCt | cTt | 6 | 6 | B.1.625 | 0.014118 |
ORF3a | 42 | P42L | cCt | cTt | 6 | 6 | B.1.636 | 0.040268 |
ORF3a | 42 | P42L | cCt | cTt | 5 | 5 | AY.110 | 0.000563 |
ORF3a | 42 | P42S | Cct | Tct | 5 | 5 | AY.117 | 0.000423 |
ORF3a | 42 | P42H | cCt | cAt | 5 | 5 | AY.118 | 0.000313 |
ORF3a | 42 | P42S | Cct | Tct | 5 | 5 | AY.29 | 0.000079 |
ORF3a | 42 | P42L | cCt | cTt | 5 | 5 | AY.33 | 0.000334 |
ORF3a | 42 | P42S | Cct | Tct | 5 | 5 | AY.33 | 0.000334 |
ORF3a | 42 | P42P | ccT | ccG | 3 | 5 | AY.4.2 | 0.000065 |
ORF3a | 42 | P42P | ccT | ccA | 2 | 5 | AY.4.2 | 0.000043 |
ORF3a | 42 | P42S | Cct | Tct | 5 | 5 | AY.46 | 0.00052 |
ORF3a | 42 | P42P | ccT | ccC | 5 | 5 | AY.46.4 | 0.000823 |
ORF3a | 42 | P42del1 | ccT | cc- | 5 | 5 | AY.5 | 0.000103 |
ORF3a | 42 | P42P | ccT | ccC | 5 | 5 | AY.53 | 0.001438 |
ORF3a | 42 | P42S | Cct | Tct | 5 | 5 | AY.8 | 0.00303 |
ORF3a | 42 | P42del | CCT | --- | 5 | 5 | B.1 | 0.000046 |
ORF3a | 42 | P42P | ccT | ccC | 3 | 5 | B.1.1 | 0.000054 |
ORF3a | 42 | P42P | ccT | ccA | 1 | 5 | B.1.1 | 0.000018 |
ORF3a | 42 | P42P | ccT | ccG | 1 | 5 | B.1.1 | 0.000018 |
ORF3a | 42 | P42L | cCt | cTt | 5 | 5 | B.1.1.220 | 0.009294 |
ORF3a | 42 | P42T | Cct | Act | 5 | 5 | B.1.1.7 | 0.000004 |
ORF3a | 42 | P42R | cCt | cGt | 5 | 5 | B.1.2 | 0.000044 |
ORF3a | 42 | P42L | cCt | cTt | 5 | 5 | B.1.221 | 0.000355 |
ORF3a | 42 | P42P | ccT | ccA | 5 | 5 | B.1.234 | 0.00066 |
ORF3a | 42 | P42L | cCt | cTt | 5 | 5 | B.1.427 | 0.000252 |
ORF3a | 42 | P42del | CCT | --- | 5 | 5 | B.1.438.1 | 0.000536 |
ORF3a | 42 | P42L | cCt | cTt | 5 | 5 | B.1.544 | 0.03012 |
ORF3a | 42 | P42S | Cct | Tct | 5 | 5 | P.1.13 | 0.004492 |
ORF3a | 42 | P42L | cCt | cTt | 5 | 5 | P.2 | 0.000933 |
ORF3a | 42 | P42L | cCt | cTt | 5 | 5 | Q.8 | 0.000825 |
ORF3a | 42 | P42S | Cct | Tct | 4 | 4 | 0.222222 | |
ORF3a | 42 | P42L | cCt | cTt | 4 | 4 | AD.2 | 0.000876 |
ORF3a | 42 | P42P | ccT | ccC | 4 | 4 | AY.118 | 0.000251 |
ORF3a | 42 | P42L | cCt | cTt | 4 | 4 | AY.118 | 0.000251 |
ORF3a | 42 | P42P | ccT | ccC | 4 | 4 | AY.119 | 0.000141 |
ORF3a | 42 | P42L | cCt | cTt | 4 | 4 | AY.121 | 0.000541 |
ORF3a | 42 | P42S | Cct | Tct | 4 | 4 | AY.20 | 0.000155 |
ORF3a | 42 | P42T | Cct | Act | 4 | 4 | AY.20 | 0.000155 |
ORF3a | 42 | P42L | cCt | cTt | 4 | 4 | AY.23 | 0.000279 |
ORF3a | 42 | P42del1 | ccT | cc- | 3 | 4 | AY.25 | 0.000018 |
ORF3a | 42 | P42del1 | Cct | -ct | 1 | 4 | AY.25 | 0.000006 |
ORF3a | 42 | P42P | ccT | ccC | 4 | 4 | AY.36 | 0.000593 |
ORF3a | 42 | P42del | CCT | --- | 4 | 4 | AY.4.2 | 0.000087 |
ORF3a | 42 | P42H | cCt | cAt | 4 | 4 | AY.5 | 0.000083 |
ORF3a | 42 | P42S | Cct | Tct | 4 | 4 | AY.52 | 0.003257 |
ORF3a | 42 | P42L | cCt | cTt | 4 | 4 | AY.55 | 0.00367 |
ORF3a | 42 | P42L | cCt | cTt | 4 | 4 | AY.75 | 0.000224 |
ORF3a | 42 | P42S | Cct | Tct | 4 | 4 | AY.75 | 0.000224 |
ORF3a | 42 | P42L | cCt | cTt | 4 | 4 | AY.85 | 0.001709 |
ORF3a | 42 | P42L | cCt | cTt | 4 | 4 | AY.98.1 | 0.000194 |
ORF3a | 42 | P42R | cCt | cGt | 4 | 4 | B.1 | 0.000037 |
ORF3a | 42 | P42H | cCt | cAt | 4 | 4 | B.1.1 | 0.000073 |
ORF3a | 42 | P42L | cCt | cTt | 4 | 4 | B.1.1.416 | 0.00362 |
ORF3a | 42 | P42S | Cct | Tct | 4 | 4 | B.1.1.63 | 0.001543 |
ORF3a | 42 | P42del1 | ccT | cc- | 4 | 4 | B.1.1.7 | 0.000004 |
ORF3a | 42 | P42L | cCt | cTt | 4 | 4 | B.1.177.42 | 0.003578 |
ORF3a | 42 | P42P | ccT | ccC | 4 | 4 | B.1.221 | 0.000284 |
ORF3a | 42 | P42L | cCt | cTt | 4 | 4 | B.1.258.17 | 0.000416 |
ORF3a | 42 | P42A | Cct | Gct | 4 | 4 | B.1.351 | 0.000119 |
ORF3a | 42 | P42L | cCt | cTt | 4 | 4 | B.1.36.7 | 0.016 |
ORF3a | 42 | P42S | Cct | Tct | 4 | 4 | B.1.369 | 0.001141 |
ORF3a | 42 | P42P | ccT | ccC | 4 | 4 | B.1.617.1 | 0.000516 |
ORF3a | 42 | P42del1 | ccT | cc- | 4 | 4 | B.1.617.2 | 0.000015 |
ORF3a | 42 | P42T | Cct | Act | 4 | 4 | B.1.617.2 | 0.000015 |
ORF3a | 42 | P42L | cCt | cTt | 4 | 4 | B.1.618 | 0.016129 |
ORF3a | 42 | P42L | cCt | cTt | 4 | 4 | D.2 | 0.0003 |
ORF3a | 42 | P42L | cCt | cTt | 4 | 4 | N.6 | 0.028369 |
ORF3a | 42 | P42L | cCt | cTt | 4 | 4 | P.1.1 | 0.001271 |
ORF3a | 42 | P42del | CCT | --- | 4 | 4 | P.1.9 | 0.019231 |
ORF3a | 42 | P42S | Cct | Tct | 3 | 3 | AY.106 | 0.001005 |
ORF3a | 42 | P42P | ccT | ccC | 3 | 3 | AY.110 | 0.000338 |
ORF3a | 42 | P42S | Cct | Tct | 3 | 3 | AY.113 | 0.000427 |
ORF3a | 42 | P42S | Cct | Tct | 3 | 3 | AY.116 | 0.00086 |
ORF3a | 42 | P42del1 | ccT | cc- | 3 | 3 | AY.118 | 0.000188 |
ORF3a | 42 | P42H | cCt | cAt | 3 | 3 | AY.119 | 0.000106 |
ORF3a | 42 | P42del | CCT | --- | 3 | 3 | AY.120 | 0.000112 |
ORF3a | 42 | P42S | Cct | Tct | 3 | 3 | AY.14 | 0.000264 |
ORF3a | 42 | P42del | CCT | --- | 3 | 3 | AY.20 | 0.000117 |
ORF3a | 42 | P42L | cCt | cTt | 3 | 3 | AY.27 | 0.000194 |
ORF3a | 42 | P42T | Cct | Act | 3 | 3 | AY.29 | 0.000047 |
ORF3a | 42 | P42T | Cct | Act | 3 | 3 | AY.3 | 0.00003 |
ORF3a | 42 | P42del1 | ccT | cc- | 3 | 3 | AY.3 | 0.00003 |
ORF3a | 42 | P42L | cCt | cTt | 3 | 3 | AY.32 | 0.001597 |
ORF3a | 42 | P42del | CCT | --- | 3 | 3 | AY.39.1 | 0.000119 |
ORF3a | 42 | P42del | CCT | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF3a | 42 | P42P | ccT | ccC | 3 | 3 | AY.4.5 | 0.000322 |
ORF3a | 42 | P42del | CCT | --- | 3 | 3 | AY.40 | 0.002893 |
ORF3a | 42 | P42P | ccT | ccC | 3 | 3 | AY.41 | 0.000882 |
ORF3a | 42 | P42L | cCt | cTt | 3 | 3 | AY.42 | 0.000121 |
ORF3a | 42 | P42del1 | ccT | cc- | 3 | 3 | AY.44 | 0.000018 |
ORF3a | 42 | P42del | CCT | --- | 3 | 3 | AY.45 | 0.000365 |
ORF3a | 42 | P42H | cCt | cAt | 3 | 3 | AY.5.3 | 0.001012 |
ORF3a | 42 | P42P | ccT | ccC | 3 | 3 | AY.5.4 | 0.00083 |
ORF3a | 42 | P42L | cCt | cTt | 3 | 3 | AY.60 | 0.002814 |
ORF3a | 42 | P42L | cCt | cTt | 3 | 3 | AY.61 | 0.000314 |
ORF3a | 42 | P42P | ccT | ccC | 2 | 3 | AY.74 | 0.000231 |
ORF3a | 42 | P42P | ccT | ccA | 1 | 3 | AY.74 | 0.000116 |
ORF3a | 42 | P42del | CCT | --- | 3 | 3 | AY.75 | 0.000168 |
ORF3a | 42 | P42P | ccT | ccC | 3 | 3 | AY.87 | 0.002498 |
ORF3a | 42 | P42H | cCt | cAt | 3 | 3 | AY.88 | 0.002653 |
ORF3a | 42 | P42P | ccT | ccC | 3 | 3 | AY.9.2 | 0.00011 |
ORF3a | 42 | P42T | Cct | Act | 3 | 3 | AY.9.2 | 0.00011 |
ORF3a | 42 | P42P | ccT | ccC | 3 | 3 | AY.93 | 0.000819 |
ORF3a | 42 | P42S | Cct | Tct | 3 | 3 | AY.95 | 0.002283 |
ORF3a | 42 | P42del | CCT | --- | 3 | 3 | AY.98 | 0.000237 |
ORF3a | 42 | P42S | Cct | Tct | 3 | 3 | AY.98.1 | 0.000145 |
ORF3a | 42 | P42del1 | ccT | cc- | 3 | 3 | B.1.1 | 0.000054 |
ORF3a | 42 | P42S | Cct | Tct | 3 | 3 | B.1.1 | 0.000054 |
ORF3a | 42 | P42P | ccT | ccC | 3 | 3 | B.1.1.115 | 0.026786 |
ORF3a | 42 | P42P | ccT | ccG | 3 | 3 | B.1.1.258 | 0.009772 |
ORF3a | 42 | P42S | Cct | Tct | 3 | 3 | B.1.1.28 | 0.000934 |
ORF3a | 42 | P42L | cCt | cTt | 3 | 3 | B.1.1.316 | 0.002775 |
ORF3a | 42 | P42L | cCt | cTt | 3 | 3 | B.1.1.317 | 0.001235 |
ORF3a | 42 | P42L | cCt | cTt | 3 | 3 | B.1.1.63 | 0.001157 |
ORF3a | 42 | P42del | CCT | --- | 3 | 3 | B.1.160.24 | 0.013274 |
ORF3a | 42 | P42S | Cct | Tct | 3 | 3 | B.1.177.7 | 0.000495 |
ORF3a | 42 | P42T | Cct | Act | 3 | 3 | B.1.2 | 0.000026 |
ORF3a | 42 | P42del1 | ccT | cc- | 3 | 3 | B.1.2 | 0.000026 |
ORF3a | 42 | P42S | Cct | Tct | 3 | 3 | B.1.258 | 0.0002 |
ORF3a | 42 | P42L | cCt | cTt | 3 | 3 | B.1.324 | 0.004815 |
ORF3a | 42 | P42H | cCt | cAt | 3 | 3 | B.1.351 | 0.000089 |
ORF3a | 42 | P42S | Cct | Tct | 3 | 3 | B.1.351 | 0.000089 |
ORF3a | 42 | P42del | CCT | --- | 3 | 3 | B.1.427 | 0.000151 |
ORF3a | 42 | P42L | cCt | cTt | 3 | 3 | B.1.533 | 0.028846 |
ORF3a | 42 | P42L | cCt | cTt | 3 | 3 | B.1.549 | 0.021583 |
ORF3a | 42 | P42L | cCt | cTt | 3 | 3 | B.1.575 | 0.00091 |
ORF3a | 42 | P42R | cCt | cGt | 3 | 3 | B.1.617.2 | 0.000011 |
ORF3a | 42 | P42L | cCt | cTt | 3 | 3 | B.1.628 | 0.001057 |
ORF3a | 42 | P42L | cCt | cTt | 3 | 3 | B.40 | 0.001093 |
ORF3a | 42 | P42P | ccT | ccA | 3 | 3 | D.2 | 0.000225 |
ORF3a | 42 | P42P | ccT | ccC | 3 | 3 | P.1 | 0.000047 |
ORF3a | 42 | P42P | ccT | ccG | 2 | 3 | P.2 | 0.000373 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 3 | P.2 | 0.000187 |
ORF3a | 42 | P42P | ccT | ccC | 3 | 3 | Q.8 | 0.000495 |
ORF3a | 42 | P42del | CCT | --- | 3 | 3 | U.3 | 0.011583 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | A.23.1 | 0.001408 |
ORF3a | 42 | P42A | Cct | Gct | 2 | 2 | A.25 | 0.036364 |
ORF3a | 42 | P42P | ccT | ccC | 2 | 2 | AY.1 | 0.000791 |
ORF3a | 42 | P42del1 | ccT | cc- | 2 | 2 | AY.100 | 0.000092 |
ORF3a | 42 | P42del1 | ccT | cc- | 2 | 2 | AY.103 | 0.000012 |
ORF3a | 42 | P42P | ccT | ccC | 2 | 2 | AY.105 | 0.001286 |
ORF3a | 42 | P42S | Cct | Tct | 2 | 2 | AY.107 | 0.000932 |
ORF3a | 42 | P42S | Cct | Tct | 2 | 2 | AY.111 | 0.000366 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | AY.113 | 0.000285 |
ORF3a | 42 | P42F | CCt | TTt | 2 | 2 | AY.12 | 0.000632 |
ORF3a | 42 | P42P | ccT | ccC | 2 | 2 | AY.121 | 0.000271 |
ORF3a | 42 | P42del | CCT | --- | 2 | 2 | AY.13 | 0.000322 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | AY.13 | 0.000322 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | AY.16.1 | 0.00094 |
ORF3a | 42 | P42S | Cct | Tct | 2 | 2 | AY.23 | 0.000139 |
ORF3a | 42 | P42S | Cct | Tct | 2 | 2 | AY.27 | 0.000129 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 2 | AY.27 | 0.000065 |
ORF3a | 42 | P42P | ccT | ccG | 1 | 2 | AY.27 | 0.000065 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | AY.28 | 0.003781 |
ORF3a | 42 | P42del | CCT | --- | 2 | 2 | AY.29 | 0.000032 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | AY.30 | 0.000791 |
ORF3a | 42 | P42H | cCt | cAt | 2 | 2 | AY.33 | 0.000134 |
ORF3a | 42 | P42P | ccT | ccC | 2 | 2 | AY.34 | 0.000194 |
ORF3a | 42 | P42T | Cct | Act | 2 | 2 | AY.39 | 0.000049 |
ORF3a | 42 | P42del1 | ccT | cc- | 2 | 2 | AY.39.1 | 0.000079 |
ORF3a | 42 | P42T | Cct | Act | 2 | 2 | AY.4 | 0.000003 |
ORF3a | 42 | P42H | cCt | cAt | 2 | 2 | AY.4.2 | 0.000043 |
ORF3a | 42 | P42S | Cct | Tct | 2 | 2 | AY.4.4 | 0.000818 |
ORF3a | 42 | P42S | Cct | Tct | 2 | 2 | AY.40 | 0.001929 |
ORF3a | 42 | P42H | cCt | cAt | 2 | 2 | AY.42 | 0.00008 |
ORF3a | 42 | P42del1 | ccT | cc- | 2 | 2 | AY.43 | 0.000009 |
ORF3a | 42 | P42R | cCt | cGt | 2 | 2 | AY.44 | 0.000012 |
ORF3a | 42 | P42del | CCT | --- | 2 | 2 | AY.46 | 0.000208 |
ORF3a | 42 | P42P | ccT | ccC | 2 | 2 | AY.46.1 | 0.002053 |
ORF3a | 42 | P42del | CCT | --- | 2 | 2 | AY.46.2 | 0.001271 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | AY.48 | 0.00093 |
ORF3a | 42 | P42P | ccT | ccC | 2 | 2 | AY.5.3 | 0.000675 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | AY.53 | 0.000575 |
ORF3a | 42 | P42del | CCT | --- | 2 | 2 | AY.6 | 0.000082 |
ORF3a | 42 | P42S | Cct | Tct | 2 | 2 | AY.62 | 0.000871 |
ORF3a | 42 | P42S | Cct | Tct | 2 | 2 | AY.63 | 0.000774 |
ORF3a | 42 | P42del | CCT | --- | 2 | 2 | AY.67 | 0.000929 |
ORF3a | 42 | P42P | ccT | ccC | 2 | 2 | AY.68 | 0.000547 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | AY.69 | 0.000373 |
ORF3a | 42 | P42P | ccT | ccC | 2 | 2 | AY.70 | 0.000417 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | AY.74 | 0.000231 |
ORF3a | 42 | P42P | ccT | ccC | 2 | 2 | AY.75 | 0.000112 |
ORF3a | 42 | P42del2 | cCT | c-- | 2 | 2 | AY.75 | 0.000112 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | AY.75.1 | 0.000361 |
ORF3a | 42 | P42S | Cct | Tct | 2 | 2 | AY.75.1 | 0.000361 |
ORF3a | 42 | P42P | ccT | ccC | 2 | 2 | AY.75.1 | 0.000361 |
ORF3a | 42 | P42P | ccT | ccC | 2 | 2 | AY.78 | 0.003082 |
ORF3a | 42 | P42del | CCT | --- | 2 | 2 | AY.81 | 0.003984 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | AY.88 | 0.001768 |
ORF3a | 42 | P42S | Cct | Tct | 2 | 2 | AY.9.1 | 0.000167 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | AY.90 | 0.001369 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | AY.91 | 0.001461 |
ORF3a | 42 | P42S | Cct | Tct | 2 | 2 | AY.92 | 0.000575 |
ORF3a | 42 | P42P | ccT | ccC | 2 | 2 | AY.96 | 0.004149 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | AY.96 | 0.004149 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | AY.98 | 0.000158 |
ORF3a | 42 | P42S | Cct | Tct | 2 | 2 | AY.98 | 0.000158 |
ORF3a | 42 | P42S | Cct | Tct | 2 | 2 | B | 0.000256 |
ORF3a | 42 | P42del1 | ccT | cc- | 2 | 2 | B.1 | 0.000018 |
ORF3a | 42 | P42T | Cct | Act | 2 | 2 | B.1 | 0.000018 |
ORF3a | 42 | P42S | Cct | Tct | 2 | 2 | B.1.1.207 | 0.002364 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.1.222 | 0.000408 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.1.25 | 0.001137 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.1.273 | 0.013514 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.1.277 | 0.001517 |
ORF3a | 42 | P42P | ccT | ccC | 2 | 2 | B.1.1.288 | 0.003831 |
ORF3a | 42 | P42S | Cct | Tct | 2 | 2 | B.1.1.305 | 0.007722 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.1.307 | 0.005063 |
ORF3a | 42 | P42S | Cct | Tct | 2 | 2 | B.1.1.317 | 0.000823 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.1.318 | 0.000604 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.1.369 | 0.000892 |
ORF3a | 42 | P42S | Cct | Tct | 2 | 2 | B.1.1.37 | 0.000386 |
ORF3a | 42 | P42del | CCT | --- | 2 | 2 | B.1.1.519 | 0.000079 |
ORF3a | 42 | P42S | Cct | Tct | 2 | 2 | B.1.1.519 | 0.000079 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.1.528 | 0.009615 |
ORF3a | 42 | P42R | cCt | cGt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF3a | 42 | P42A | Cct | Gct | 2 | 2 | B.1.1.7 | 0.000002 |
ORF3a | 42 | P42S | Cct | Tct | 2 | 2 | B.1.160.16 | 0.001859 |
ORF3a | 42 | P42del | CCT | --- | 2 | 2 | B.1.160.33 | 0.00885 |
ORF3a | 42 | P42P | ccT | ccC | 2 | 2 | B.1.177.21 | 0.000153 |
ORF3a | 42 | P42T | Cct | Act | 2 | 2 | B.1.177.32 | 0.002699 |
ORF3a | 42 | P42P | ccT | ccC | 2 | 2 | B.1.177.41 | 0.005 |
ORF3a | 42 | P42del | CCT | --- | 2 | 2 | B.1.177.60 | 0.000437 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.214 | 0.007326 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.234 | 0.000264 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.235 | 0.005038 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.243.1 | 0.044444 |
ORF3a | 42 | P42R | cCt | cGt | 2 | 2 | B.1.247 | 0.029851 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.280 | 0.014286 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.311 | 0.000549 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.336 | 0.004878 |
ORF3a | 42 | P42P | ccT | ccC | 2 | 2 | B.1.351 | 0.000059 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.356 | 0.003454 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.36.18 | 0.00084 |
ORF3a | 42 | P42T | Cct | Act | 2 | 2 | B.1.36.36 | 0.001204 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.367 | 0.001585 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.369 | 0.00057 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.375 | 0.001639 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.413 | 0.008511 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.438.1 | 0.000215 |
ORF3a | 42 | P42H | cCt | cAt | 2 | 2 | B.1.462 | 0.014493 |
ORF3a | 42 | P42del | CCT | --- | 2 | 2 | B.1.471 | 0.005464 |
ORF3a | 42 | P42del | CCT | --- | 2 | 2 | B.1.525 | 0.000226 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.576 | 0.001813 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.577 | 0.001375 |
ORF3a | 42 | P42del | CCT | --- | 2 | 2 | B.1.621 | 0.000177 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.1.635 | 0.035088 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | B.3.1 | 0.003317 |
ORF3a | 42 | P42del | CCT | --- | 2 | 2 | D.2 | 0.00015 |
ORF3a | 42 | P42S | Cct | Tct | 2 | 2 | D.2 | 0.00015 |
ORF3a | 42 | P42R | cCt | cGt | 2 | 2 | P.1 | 0.000032 |
ORF3a | 42 | P42L | cCt | cTt | 2 | 2 | P.1.15 | 0.000465 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | A.11 | 0.058824 |
ORF3a | 42 | P42P | ccT | ccG | 1 | 1 | A.2 | 0.000662 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | A.2.3 | 0.004739 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | A.2.5 | 0.000499 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | A.27 | 0.001656 |
ORF3a | 42 | P42A | Cct | Gct | 1 | 1 | AA.4 | 0.009091 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | AH.3 | 0.003802 |
ORF3a | 42 | P42Y | CCt | TAt | 1 | 1 | All | 0 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AP.1 | 0.001502 |
ORF3a | 42 | P42del1 | ccT | cc- | 1 | 1 | AP.1 | 0.001502 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AT.1 | 0.005128 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.1 | 0.000396 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.10 | 0.00053 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 42 | P42R | cCt | cGt | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 42 | P42H | cCt | cAt | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 42 | P42del2 | CCT | --N | 1 | 1 | AY.103 | 0.000006 |
ORF3a | 42 | P42A | Cct | Gct | 1 | 1 | AY.103 | 0.000006 |
ORF3a | 42 | P42H | cCt | cAt | 1 | 1 | AY.103 | 0.000006 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.104 | 0.001984 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.105 | 0.000643 |
ORF3a | 42 | P42P | ccT | ccA | 1 | 1 | AY.107 | 0.000466 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.108 | 0.001103 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | AY.109 | 0.00074 |
ORF3a | 42 | P42H | cCt | cAt | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | AY.114 | 0.000231 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.114 | 0.000231 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | AY.114 | 0.000231 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | AY.116.1 | 0.000311 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 42 | P42del1 | ccT | cc- | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 42 | P42A | Cct | Gct | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.120.2 | 0.001285 |
ORF3a | 42 | P42A | Cct | Gct | 1 | 1 | AY.121 | 0.000135 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | AY.13 | 0.000161 |
ORF3a | 42 | P42del1 | ccT | cc- | 1 | 1 | AY.14 | 0.000088 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | AY.16 | 0.00038 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.16 | 0.00038 |
ORF3a | 42 | P42H | cCt | cAt | 1 | 1 | AY.16 | 0.00038 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | AY.19 | 0.00114 |
ORF3a | 42 | P42H | cCt | cAt | 1 | 1 | AY.2 | 0.000356 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | AY.22 | 0.002092 |
ORF3a | 42 | P42H | cCt | cAt | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 42 | P42del2 | cCT | c-- | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | AY.23.1 | 0.000417 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 42 | P42H | cCt | cAt | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 42 | P42H | cCt | cAt | 1 | 1 | AY.27 | 0.000065 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | AY.28 | 0.00189 |
ORF3a | 42 | P42H | cCt | cAt | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | AY.29.1 | 0.000221 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.29.1 | 0.000221 |
ORF3a | 42 | P42H | cCt | cAt | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.3.1 | 0.000085 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.37 | 0.000316 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | AY.38 | 0.000499 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | AY.38 | 0.000499 |
ORF3a | 42 | P42A | Cct | Gct | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 42 | P42H | cCt | cAt | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | AY.39.1.1 | 0.000725 |
ORF3a | 42 | P42A | Cct | Gct | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 42 | P42R | cCt | cGt | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | AY.41 | 0.000294 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 42 | P42T | Cct | Act | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | AY.45 | 0.000122 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.46.2 | 0.000635 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | AY.46.2 | 0.000635 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | AY.46.3 | 0.000934 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.46.4 | 0.000165 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | AY.46.4 | 0.000165 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.46.6 | 0.000072 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | AY.46.6 | 0.000072 |
ORF3a | 42 | P42P | ccT | ccG | 1 | 1 | AY.47 | 0.000031 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | AY.48 | 0.000465 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | AY.49 | 0.003195 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | AY.5 | 0.000021 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | AY.5 | 0.000021 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | AY.5.4 | 0.000277 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | AY.50 | 0.000799 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.50 | 0.000799 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | AY.54 | 0.000095 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.54 | 0.000095 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | AY.55 | 0.000917 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.56 | 0.001605 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | AY.57 | 0.000656 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | AY.58 | 0.000907 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 42 | P42R | cCt | cGt | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | AY.65 | 0.000533 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | AY.7 | 0.000196 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | AY.71 | 0.000475 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.73 | 0.000665 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.76 | 0.004831 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.78 | 0.001541 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.82 | 0.001357 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | AY.84 | 0.000437 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | AY.89 | 0.004902 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.89 | 0.004902 |
ORF3a | 42 | P42del1 | ccT | cc- | 1 | 1 | AY.9 | 0.000068 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | AY.9 | 0.000068 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.9 | 0.000068 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.9.1 | 0.000084 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | AY.90 | 0.000684 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | AY.91 | 0.00073 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | AY.91 | 0.00073 |
ORF3a | 42 | P42H | cCt | cAt | 1 | 1 | AY.91 | 0.00073 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | AY.92 | 0.000287 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.92 | 0.000287 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | AY.93 | 0.000273 |
ORF3a | 42 | P42P | ccT | ccG | 1 | 1 | AY.94 | 0.000443 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | AY.95 | 0.000761 |
ORF3a | 42 | P42del1 | ccT | cc- | 1 | 1 | AY.98 | 0.000079 |
ORF3a | 42 | P42Y | CCt | TAt | 1 | 1 | AY.99 | 0.001049 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | AY.99 | 0.001049 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | AY.99 | 0.001049 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 42 | P42P | ccT | ccA | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | AZ.1 | 0.000867 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | B | 0.000128 |
ORF3a | 42 | P42P | ccT | ccA | 1 | 1 | B | 0.000128 |
ORF3a | 42 | P42T | Cct | Act | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 42 | P42del2 | cCT | c-- | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 42 | P42H | cCt | cAt | 1 | 1 | B.1.1.101 | 0.01 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.1.1.117 | 0.009709 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.1.1.139 | 0.022727 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.141 | 0.002012 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.1.1.159 | 0.004673 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.176 | 0.000439 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | B.1.1.192 | 0.002309 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.1.1.192 | 0.002309 |
ORF3a | 42 | P42del1 | ccT | cc- | 1 | 1 | B.1.1.214 | 0.000055 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | B.1.1.225 | 0.007194 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.243 | 0.004082 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.266 | 0.012195 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.27 | 0.00565 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.279 | 0.001121 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | B.1.1.28 | 0.000311 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.294 | 0.001266 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.301 | 0.001179 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.305 | 0.003861 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.1.1.306 | 0.000438 |
ORF3a | 42 | P42H | cCt | cAt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.308 | 0.011765 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.1.1.311 | 0.000358 |
ORF3a | 42 | P42H | cCt | cAt | 1 | 1 | B.1.1.318 | 0.000302 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.34 | 0.013158 |
ORF3a | 42 | P42H | cCt | cAt | 1 | 1 | B.1.1.34 | 0.013158 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.354 | 0.004386 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | B.1.1.355 | 0.015385 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | B.1.1.369 | 0.000446 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | B.1.1.371 | 0.010417 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | B.1.1.388 | 0.045455 |
ORF3a | 42 | P42R | cCt | cGt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | B.1.1.39 | 0.00051 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.434 | 0.000349 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.44 | 0.00241 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.1.1.448 | 0.002033 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.1.1.464 | 0.001473 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.50 | 0.000679 |
ORF3a | 42 | P42F | CCt | TTt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.523 | 0.001563 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.1.1.524 | 0.020833 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.524 | 0.020833 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.1.89 | 0.006061 |
ORF3a | 42 | P42H | cCt | cAt | 1 | 1 | B.1.1.89 | 0.006061 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.110 | 0.004525 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.128 | 0.000635 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.157 | 0.002985 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.160.23 | 0.004831 |
ORF3a | 42 | P42P | ccT | ccA | 1 | 1 | B.1.177.10 | 0.000878 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.1.177.11 | 0.001698 |
ORF3a | 42 | P42del1 | ccT | cc- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF3a | 42 | P42R | cCt | cGt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.177.35 | 0.000691 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.1.177.4 | 0.000211 |
ORF3a | 42 | P42H | cCt | cAt | 1 | 1 | B.1.177.42 | 0.000894 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.1.177.44 | 0.000519 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.177.57 | 0.000281 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.1.177.73 | 0.000566 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | B.1.177.81 | 0.000189 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.190 | 0.01 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.195 | 0.005025 |
ORF3a | 42 | P42F | CCt | TTt | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | B.1.210 | 0.002132 |
ORF3a | 42 | P42T | Cct | Act | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 42 | P42T | Cct | Act | 1 | 1 | B.1.234 | 0.000132 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.237 | 0.004975 |
ORF3a | 42 | P42H | cCt | cAt | 1 | 1 | B.1.239 | 0.001221 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.1.240 | 0.000216 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | B.1.241 | 0.000812 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 42 | P42H | cCt | cAt | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.293 | 0.0125 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.320 | 0.001245 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.338 | 0.008621 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.1.346 | 0.001311 |
ORF3a | 42 | P42A | Cct | Gct | 1 | 1 | B.1.349 | 0.000715 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.1.350 | 0.002933 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.350 | 0.002933 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.36 | 0.000146 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.1.36 | 0.000146 |
ORF3a | 42 | P42T | Cct | Act | 1 | 1 | B.1.36 | 0.000146 |
ORF3a | 42 | P42R | cCt | cGt | 1 | 1 | B.1.36.1 | 0.00114 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.1.36.16 | 0.001425 |
ORF3a | 42 | P42H | cCt | cAt | 1 | 1 | B.1.36.18 | 0.00042 |
ORF3a | 42 | P42del2 | cCT | c-- | 1 | 1 | B.1.36.24 | 0.006173 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.1.36.36 | 0.000602 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.36.38 | 0.001642 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | B.1.36.39 | 0.002217 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | B.1.367 | 0.000792 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.1.396 | 0.000706 |
ORF3a | 42 | P42A | Cct | Gct | 1 | 1 | B.1.398 | 0.002976 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.1.399 | 0.001934 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.1.413 | 0.004255 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.428 | 0.00102 |
ORF3a | 42 | P42del1 | ccT | cc- | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.436 | 0.001029 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.1.438.1 | 0.000107 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.1.456 | 0.003268 |
ORF3a | 42 | P42T | Cct | Act | 1 | 1 | B.1.466.2 | 0.000391 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.470 | 0.001404 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.1.470 | 0.001404 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.497 | 0.000315 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.499 | 0.00105 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.1.499.1 | 0.111111 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.1.509 | 0.000866 |
ORF3a | 42 | P42T | Cct | Act | 1 | 1 | B.1.517 | 0.000427 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.524 | 0.001406 |
ORF3a | 42 | P42H | cCt | cAt | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.1.548 | 0.035714 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.550 | 0.013699 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.551 | 0.00129 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.558 | 0.004566 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.1.560 | 0.00463 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | B.1.563 | 0.016949 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.565 | 0.00081 |
ORF3a | 42 | P42H | cCt | cAt | 1 | 1 | B.1.566 | 0.019231 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.567 | 0.003333 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.568 | 0.001111 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.574 | 0.002151 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.580 | 0.004065 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.1.587 | 0.001898 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.1.595 | 0.000261 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.595 | 0.000261 |
ORF3a | 42 | P42del1 | ccT | cc- | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 42 | P42H | cCt | cAt | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 42 | P42H | cCt | cAt | 1 | 1 | B.1.599 | 0.00365 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.1.605 | 0.005952 |
ORF3a | 42 | P42P | ccT | ccA | 1 | 1 | B.1.621 | 0.000089 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.1.628 | 0.000352 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.638 | 0.052632 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF3a | 42 | P42R | cCt | cGt | 1 | 1 | B.1.9 | 0.006173 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.1.9 | 0.006173 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.4 | 0.002208 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.53 | 0.011765 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | B.55 | 0.00295 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | B.55 | 0.00295 |
ORF3a | 42 | P42T | Cct | Act | 1 | 1 | B.6 | 0.00091 |
ORF3a | 42 | P42H | cCt | cAt | 1 | 1 | B.6 | 0.00091 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | C.2.1 | 0.006667 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | C.36.3 | 0.000567 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | C.37 | 0.000116 |
ORF3a | 42 | P42P | ccT | ccC | 1 | 1 | C.37 | 0.000116 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | N.5 | 0.001767 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | P.1.12 | 0.000484 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | P.1.13 | 0.000898 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 42 | P42R | cCt | cGt | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | P.1.16 | 0.000374 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | P.1.4 | 0.000977 |
ORF3a | 42 | P42del | CCT | --- | 1 | 1 | P.1.6 | 0.001946 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | Q.1 | 0.000126 |
ORF3a | 42 | P42A | Cct | Gct | 1 | 1 | Q.1 | 0.000126 |
ORF3a | 42 | P42T | Cct | Act | 1 | 1 | Q.3 | 0.000145 |
ORF3a | 42 | P42H | cCt | cAt | 1 | 1 | Q.8 | 0.000165 |
ORF3a | 42 | P42L | cCt | cTt | 1 | 1 | R.1 | 0.00009 |
ORF3a | 42 | P42S | Cct | Tct | 1 | 1 | W.3 | 0.005263 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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