CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 42

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a42P42LnonsyncCtcTt64133641110.99965725516-25518
ORF3a42P42LnonsyncCTcTC64133210.00032744525516-25518
ORF3a42P42LnonsyncCTcTA6413310.000015592625516-25518
ORF3a42P42HnonsyncCtcAt50565056125516-25518
ORF3a42P42PsynccTccC497446830.94149625516-25518
ORF3a42P42PsynccTccG49742120.042621625516-25518
ORF3a42P42PsynccTccA4974790.015882625516-25518
ORF3a42P42SnonsynCctTct49644964125516-25518
ORF3a42P42deldelCCT---997997125516-25518
ORF3a42P42RnonsyncCtcGt220220125516-25518
ORF3a42P42del1delccTcc-1801790.99444425516-25518
ORF3a42P42del1delCct-ct18010.0055555625516-25518
ORF3a42P42TnonsynCctAct7575125516-25518
ORF3a42P42AnonsynCctGct5454125516-25518
ORF3a42P42FnonsynCCtTTt1212125516-25518
ORF3a42P42del2delcCTc--650.83333325516-25518
ORF3a42P42del2delCCT--N610.16666725516-25518
ORF3a42P42YnonsynCCtTAt11125516-25518

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a42P42LcCtcTt6411164133All0.012262
ORF3a42P42LcCTcTC2164133All0.000004
ORF3a42P42LcCTcTA164133All0
ORF3a42P42LcCtcTt4183541852B.1.5260.983312
ORF3a42P42LcCTcTC1641852B.1.5260.000376
ORF3a42P42LcCTcTA141852B.1.5260.000024
ORF3a42P42LcCtcTt1341213417B.1.6370.980051
ORF3a42P42LcCTcTC513417B.1.6370.000365
ORF3a42P42HcCtcAt50565056All0.000967
ORF3a42P42PccTccC46834974All0.000896
ORF3a42P42PccTccG2124974All0.000041
ORF3a42P42PccTccA794974All0.000015
ORF3a42P42SCctTct49644964All0.000949
ORF3a42P42HcCtcAt46304630B.1.1.70.004145
ORF3a42P42SCctTct28132813AY.120.889064
ORF3a42P42PccTccC27382742B.1.617.20.01031
ORF3a42P42PccTccG42742B.1.617.20.000015
ORF3a42P42LcCtcTt21212121AY.1030.013169
ORF3a42P42LcCtcTt12141214B.10.01112
ORF3a42P42LcCtcTt10601060AY.40.00165
ORF3a42P42delCCT---997997All0.000191
ORF3a42P42LcCtcTt924924B.1.1.70.000827
ORF3a42P42PccTccC785785AY.1020.020813
ORF3a42P42SCctTct600600B.1.1.70.000537
ORF3a42P42LcCtcTt316316AY.250.001901
ORF3a42P42PccTccC232242B.1.1.70.000208
ORF3a42P42PccTccG5242B.1.1.70.000004
ORF3a42P42PccTccA5242B.1.1.70.000004
ORF3a42P42SCctTct234234AY.40.000364
ORF3a42P42LcCtcTt224224B.1.617.20.000843
ORF3a42P42RcCtcGt220220All0.000042
ORF3a42P42LcCtcTt214214AY.1200.007956
ORF3a42P42LcCtcTt194194AY.9.20.007126
ORF3a42P42delCCT---192192AY.260.005436
ORF3a42P42del1ccTcc-179180All0.000034
ORF3a42P42del1Cct-ct1180All0
ORF3a42P42delCCT---153153B.1.6300.801047
ORF3a42P42LcCtcTt150150B.1.10.002721
ORF3a42P42LcCtcTt144144AY.30.001432
ORF3a42P42SCctTct135135AY.430.000598
ORF3a42P42PccTccC71131AY.440.000432
ORF3a42P42PccTccG58131AY.440.000353
ORF3a42P42PccTccA2131AY.440.000012
ORF3a42P42PccTccC124124AY.390.003064
ORF3a42P42LcCtcTt118118AY.260.003341
ORF3a42P42SCctTct117117B.1.617.20.000441
ORF3a42P42del1ccTcc-109109B.1.617.30.325373
ORF3a42P42LcCtcTt107107AY.430.000474
ORF3a42P42RcCtcGt106106AY.40.000165
ORF3a42P42PccTccC99102AY.430.000439
ORF3a42P42PccTccA2102AY.430.000009
ORF3a42P42PccTccG1102AY.430.000004
ORF3a42P42LcCtcTt9999B.1.1770.001304
ORF3a42P42LcCtcTt9595AY.1090.070266
ORF3a42P42HcCtcAt9595B.1.1.5280.456731
ORF3a42P42LcCtcTt9393AY.390.002298
ORF3a42P42LcCtcTt9090AY.60.003702
ORF3a42P42LcCtcTt8989B.1.20.000784
ORF3a42P42LcCtcTt8888AY.290.001388
ORF3a42P42HcCtcAt8787AY.40.000135
ORF3a42P42delCCT---8787B.1.20.000766
ORF3a42P42SCctTct7676AY.440.000463
ORF3a42P42TCctAct7575All0.000014
ORF3a42P42LcCtcTt7373P.10.00115
ORF3a42P42LcCtcTt7171B.1.5610.028186
ORF3a42P42delCCT---6868AY.430.000301
ORF3a42P42SCctTct6666AY.250.000397
ORF3a42P42RcCtcGt6666B.1.1770.000869
ORF3a42P42SCctTct6161AY.1030.000379
ORF3a42P42delCCT---6161B.1.1.70.000055
ORF3a42P42PccTccC5959AY.1060.019759
ORF3a42P42PccTccC5858AY.1170.004902
ORF3a42P42PccTccC5858AY.34.10.029577
ORF3a42P42PccTccG5157B.10.000467
ORF3a42P42PccTccC557B.10.000046
ORF3a42P42PccTccA157B.10.000009
ORF3a42P42SCctTct5757B.1.4270.002878
ORF3a42P42SCctTct5555B.1.1770.000724
ORF3a42P42ACctGct5454All0.00001
ORF3a42P42delCCT---5454B.1.177.820.025776
ORF3a42P42LcCtcTt5050AY.1190.001765
ORF3a42P42PccTccG3749AY.40.000058
ORF3a42P42PccTccC1249AY.40.000019
ORF3a42P42SCctTct4949B.1.20.000431
ORF3a42P42SCctTct4747B.10.00043
ORF3a42P42HcCtcAt4747B.1.177.350.032481
ORF3a42P42LcCtcTt4646B.1.3510.001367
ORF3a42P42SCctTct4242AY.30.000418
ORF3a42P42delCCT---4242AY.420.00169
ORF3a42P42SCctTct4242B.1.4290.000988
ORF3a42P42LcCtcTt4040A0.01548
ORF3a42P42LcCtcTt4040AY.440.000243
ORF3a42P42LcCtcTt3939B.1.6230.020923
ORF3a42P42LcCtcTt3838AY.99.20.003502
ORF3a42P42ACctGct3737B.1.617.20.000139
ORF3a42P42LcCtcTt3636AY.200.001399
ORF3a42P42delCCT---3636B.1.1770.000474
ORF3a42P42LcCtcTt3636P.1.70.011494
ORF3a42P42PccTccA3535B.1.1.5190.00139
ORF3a42P42PccTccC3535B.1.258.110.013872
ORF3a42P42delCCT---3434AY.40.000053
ORF3a42P42LcCtcTt3333AY.1170.002789
ORF3a42P42SCctTct3333AY.390.000815
ORF3a42P42SCctTct3333AY.840.014436
ORF3a42P42LcCtcTt3333B.1.3460.04325
ORF3a42P42PccTccC3232B.1.1770.000421
ORF3a42P42SCctTct2929B.1.1600.000904
ORF3a42P42PccTccG2929B.1.6010.878788
ORF3a42P42LcCtcTt2727AY.1010.013242
ORF3a42P42LcCtcTt2727B.1.1600.000842
ORF3a42P42LcCtcTt2626AY.450.003164
ORF3a42P42SCctTct2626AY.610.002724
ORF3a42P42LcCtcTt2626B.1.177.320.035088
ORF3a42P42delCCT---2626B.1.617.20.000098
ORF3a42P42LcCtcTt2525AY.4.20.000542
ORF3a42P42LcCtcTt2525B0.003195
ORF3a42P42LcCtcTt2525B.1.4020.245098
ORF3a42P42SCctTct2525P.10.000394
ORF3a42P42SCctTct2424AY.46.60.001733
ORF3a42P42TCctAct2424AY.9.10.002009
ORF3a42P42delCCT---2424B.1.10.000435
ORF3a42P42LcCtcTt2424B.1.177.730.01359
ORF3a42P42SCctTct2424B.1.2210.001705
ORF3a42P42PccTccC2323AY.1200.000855
ORF3a42P42SCctTct2222AY.5.30.007422
ORF3a42P42LcCtcTt2222B.1.177.70.003627
ORF3a42P42LcCtcTt2222B.1.4290.000518
ORF3a42P42HcCtcAt2121AY.250.000126
ORF3a42P42LcCtcTt2121AY.340.002036
ORF3a42P42LcCtcTt2121B.1.1.3120.040153
ORF3a42P42LcCtcTt2121B.1.264.11
ORF3a42P42SCctTct2121B.1.6210.001859
ORF3a42P42PccTccC1720AY.1030.000106
ORF3a42P42PccTccA320AY.1030.000019
ORF3a42P42HcCtcAt2020B.1.20.000176
ORF3a42P42delCCT---1919AY.250.000114
ORF3a42P42PccTccA1419AY.250.000084
ORF3a42P42PccTccC419AY.250.000024
ORF3a42P42PccTccG119AY.250.000006
ORF3a42P42LcCtcTt1919B.1.1.5070.165217
ORF3a42P42LcCtcTt1818AY.350.004195
ORF3a42P42PccTccC1717AY.460.001769
ORF3a42P42LcCtcTt1616AY.116.10.004983
ORF3a42P42SCctTct1616AY.260.000453
ORF3a42P42PccTccC1616AY.590.008475
ORF3a42P42HcCtcAt1616B.1.617.20.00006
ORF3a42P42PccTccC1515AY.770.016911
ORF3a42P42LcCtcTt1515B.1.5960.001307
ORF3a42P42delCCT---1515B.1.6370.001096
ORF3a42P42delCCT---1515P.10.000236
ORF3a42P42LcCtcTt1515P.1.170.002426
ORF3a42P42SCctTct1414AY.1190.000494
ORF3a42P42PccTccC1414AY.450.001704
ORF3a42P42PccTccC1414AY.730.009315
ORF3a42P42LcCtcTt1414B.1.1.100.015608
ORF3a42P42HcCtcAt1414B.1.1770.000184
ORF3a42P42PccTccC1314B.1.20.000114
ORF3a42P42PccTccG114B.1.20.000009
ORF3a42P42LcCtcTt1414B.1.2400.003018
ORF3a42P42SCctTct1414B.1.4090.010937
ORF3a42P42LcCtcTt1414Q.10.001769
ORF3a42P42LcCtcTt1313AY.1000.000598
ORF3a42P42SCctTct1313AY.1020.000345
ORF3a42P42PccTccC1313AY.230.000907
ORF3a42P42PccTccC1313AY.330.000868
ORF3a42P42SCctTct1313AY.39.10.000515
ORF3a42P42LcCtcTt1313AY.470.000404
ORF3a42P42delCCT---1313AY.98.10.00063
ORF3a42P42SCctTct1313B.1.621.10.006576
ORF3a42P42FCCtTTt1212All0.000002
ORF3a42P42LcCtcTt1212AY.1020.000318
ORF3a42P42PccTccC1212AY.1110.002198
ORF3a42P42PccTccC1212AY.1160.003441
ORF3a42P42PccTccG1212B.1.1.330.005051
ORF3a42P42LcCtcTt1212B.1.1.5190.000477
ORF3a42P42LcCtcTt1212B.1.466.20.004695
ORF3a42P42del1ccTcc-1111AY.40.000017
ORF3a42P42PccTccC1111AY.980.000869
ORF3a42P42HcCtcAt1111AY.99.20.001014
ORF3a42P42LcCtcTt1111B.1.3990.021277
ORF3a42P42RcCtcGt1111B.1.6370.000804
ORF3a42P42LcCtcTt1010AY.140.00088
ORF3a42P42delCCT---1010AY.30.000099
ORF3a42P42LcCtcTt1010AY.39.10.000396
ORF3a42P42PccTccC1010AY.50.000206
ORF3a42P42LcCtcTt1010AY.5.40.002767
ORF3a42P42HcCtcAt1010B.1.258.170.00104
ORF3a42P42LcCtcTt1010C.370.001161
ORF3a42P42LcCtcTt1010P.1.100.002695
ORF3a42P42RcCtcGt99AY.1170.000761
ORF3a42P42SCctTct99AY.340.000873
ORF3a42P42LcCtcTt99AY.46.50.001786
ORF3a42P42LcCtcTt99AY.50.000186
ORF3a42P42delCCT---99B.1.2580.000599
ORF3a42P42del1ccTcc-99P.1.10.002859
ORF3a42P42PccTccC88AY.120.10.002568
ORF3a42P42PccTccC88AY.60.000329
ORF3a42P42LcCtcTt88B.1.110.30.005747
ORF3a42P42HcCtcAt88B.1.1600.00025
ORF3a42P42LcCtcTt88B.1.214.20.004796
ORF3a42P42SCctTct88B.1.258.170.000832
ORF3a42P42SCctTct88B.1.36.10.009122
ORF3a42P42SCctTct88B.1.36.80.008
ORF3a42P42FCCtTTt88B.1.5260.000188
ORF3a42P42LcCtcTt88B.1.6210.000708
ORF3a42P42LcCtcTt88P.1.140.000382
ORF3a42P42delCCT---77AY.1030.000043
ORF3a42P42delCCT---77AY.390.000173
ORF3a42P42TCctAct77AY.430.000031
ORF3a42P42LcCtcTt77AY.460.000729
ORF3a42P42HcCtcAt77AY.470.000218
ORF3a42P42PccTccC77AY.840.003062
ORF3a42P42LcCtcTt77B.1.1.390.003568
ORF3a42P42PccTccC77B.1.177.750.007284
ORF3a42P42LcCtcTt77B.1.5540.030837
ORF3a42P42LcCtcTt77B.1.617.10.000903
ORF3a42P42SCctTct77B.1.617.10.000903
ORF3a42P42del2cCTc--56All0.000001
ORF3a42P42del2CCT--N16All0
ORF3a42P42SCctTct66AY.1200.000223
ORF3a42P42HcCtcAt66AY.390.000148
ORF3a42P42HcCtcAt66AY.4.2.10.000894
ORF3a42P42SCctTct66AY.4.50.000645
ORF3a42P42HcCtcAt66AY.430.000027
ORF3a42P42HcCtcAt66AY.440.000037
ORF3a42P42delCCT---66AY.440.000037
ORF3a42P42LcCtcTt66AY.620.002614
ORF3a42P42SCctTct66AY.740.000694
ORF3a42P42HcCtcAt66B.10.000055
ORF3a42P42PccTccC66B.1.1.2220.001224
ORF3a42P42LcCtcTt66B.1.2430.000418
ORF3a42P42LcCtcTt66B.1.6250.014118
ORF3a42P42LcCtcTt66B.1.6360.040268
ORF3a42P42LcCtcTt55AY.1100.000563
ORF3a42P42SCctTct55AY.1170.000423
ORF3a42P42HcCtcAt55AY.1180.000313
ORF3a42P42SCctTct55AY.290.000079
ORF3a42P42LcCtcTt55AY.330.000334
ORF3a42P42SCctTct55AY.330.000334
ORF3a42P42PccTccG35AY.4.20.000065
ORF3a42P42PccTccA25AY.4.20.000043
ORF3a42P42SCctTct55AY.460.00052
ORF3a42P42PccTccC55AY.46.40.000823
ORF3a42P42del1ccTcc-55AY.50.000103
ORF3a42P42PccTccC55AY.530.001438
ORF3a42P42SCctTct55AY.80.00303
ORF3a42P42delCCT---55B.10.000046
ORF3a42P42PccTccC35B.1.10.000054
ORF3a42P42PccTccA15B.1.10.000018
ORF3a42P42PccTccG15B.1.10.000018
ORF3a42P42LcCtcTt55B.1.1.2200.009294
ORF3a42P42TCctAct55B.1.1.70.000004
ORF3a42P42RcCtcGt55B.1.20.000044
ORF3a42P42LcCtcTt55B.1.2210.000355
ORF3a42P42PccTccA55B.1.2340.00066
ORF3a42P42LcCtcTt55B.1.4270.000252
ORF3a42P42delCCT---55B.1.438.10.000536
ORF3a42P42LcCtcTt55B.1.5440.03012
ORF3a42P42SCctTct55P.1.130.004492
ORF3a42P42LcCtcTt55P.20.000933
ORF3a42P42LcCtcTt55Q.80.000825
ORF3a42P42SCctTct440.222222
ORF3a42P42LcCtcTt44AD.20.000876
ORF3a42P42PccTccC44AY.1180.000251
ORF3a42P42LcCtcTt44AY.1180.000251
ORF3a42P42PccTccC44AY.1190.000141
ORF3a42P42LcCtcTt44AY.1210.000541
ORF3a42P42SCctTct44AY.200.000155
ORF3a42P42TCctAct44AY.200.000155
ORF3a42P42LcCtcTt44AY.230.000279
ORF3a42P42del1ccTcc-34AY.250.000018
ORF3a42P42del1Cct-ct14AY.250.000006
ORF3a42P42PccTccC44AY.360.000593
ORF3a42P42delCCT---44AY.4.20.000087
ORF3a42P42HcCtcAt44AY.50.000083
ORF3a42P42SCctTct44AY.520.003257
ORF3a42P42LcCtcTt44AY.550.00367
ORF3a42P42LcCtcTt44AY.750.000224
ORF3a42P42SCctTct44AY.750.000224
ORF3a42P42LcCtcTt44AY.850.001709
ORF3a42P42LcCtcTt44AY.98.10.000194
ORF3a42P42RcCtcGt44B.10.000037
ORF3a42P42HcCtcAt44B.1.10.000073
ORF3a42P42LcCtcTt44B.1.1.4160.00362
ORF3a42P42SCctTct44B.1.1.630.001543
ORF3a42P42del1ccTcc-44B.1.1.70.000004
ORF3a42P42LcCtcTt44B.1.177.420.003578
ORF3a42P42PccTccC44B.1.2210.000284
ORF3a42P42LcCtcTt44B.1.258.170.000416
ORF3a42P42ACctGct44B.1.3510.000119
ORF3a42P42LcCtcTt44B.1.36.70.016
ORF3a42P42SCctTct44B.1.3690.001141
ORF3a42P42PccTccC44B.1.617.10.000516
ORF3a42P42del1ccTcc-44B.1.617.20.000015
ORF3a42P42TCctAct44B.1.617.20.000015
ORF3a42P42LcCtcTt44B.1.6180.016129
ORF3a42P42LcCtcTt44D.20.0003
ORF3a42P42LcCtcTt44N.60.028369
ORF3a42P42LcCtcTt44P.1.10.001271
ORF3a42P42delCCT---44P.1.90.019231
ORF3a42P42SCctTct33AY.1060.001005
ORF3a42P42PccTccC33AY.1100.000338
ORF3a42P42SCctTct33AY.1130.000427
ORF3a42P42SCctTct33AY.1160.00086
ORF3a42P42del1ccTcc-33AY.1180.000188
ORF3a42P42HcCtcAt33AY.1190.000106
ORF3a42P42delCCT---33AY.1200.000112
ORF3a42P42SCctTct33AY.140.000264
ORF3a42P42delCCT---33AY.200.000117
ORF3a42P42LcCtcTt33AY.270.000194
ORF3a42P42TCctAct33AY.290.000047
ORF3a42P42TCctAct33AY.30.00003
ORF3a42P42del1ccTcc-33AY.30.00003
ORF3a42P42LcCtcTt33AY.320.001597
ORF3a42P42delCCT---33AY.39.10.000119
ORF3a42P42delCCT---33AY.4.50.000322
ORF3a42P42PccTccC33AY.4.50.000322
ORF3a42P42delCCT---33AY.400.002893
ORF3a42P42PccTccC33AY.410.000882
ORF3a42P42LcCtcTt33AY.420.000121
ORF3a42P42del1ccTcc-33AY.440.000018
ORF3a42P42delCCT---33AY.450.000365
ORF3a42P42HcCtcAt33AY.5.30.001012
ORF3a42P42PccTccC33AY.5.40.00083
ORF3a42P42LcCtcTt33AY.600.002814
ORF3a42P42LcCtcTt33AY.610.000314
ORF3a42P42PccTccC23AY.740.000231
ORF3a42P42PccTccA13AY.740.000116
ORF3a42P42delCCT---33AY.750.000168
ORF3a42P42PccTccC33AY.870.002498
ORF3a42P42HcCtcAt33AY.880.002653
ORF3a42P42PccTccC33AY.9.20.00011
ORF3a42P42TCctAct33AY.9.20.00011
ORF3a42P42PccTccC33AY.930.000819
ORF3a42P42SCctTct33AY.950.002283
ORF3a42P42delCCT---33AY.980.000237
ORF3a42P42SCctTct33AY.98.10.000145
ORF3a42P42del1ccTcc-33B.1.10.000054
ORF3a42P42SCctTct33B.1.10.000054
ORF3a42P42PccTccC33B.1.1.1150.026786
ORF3a42P42PccTccG33B.1.1.2580.009772
ORF3a42P42SCctTct33B.1.1.280.000934
ORF3a42P42LcCtcTt33B.1.1.3160.002775
ORF3a42P42LcCtcTt33B.1.1.3170.001235
ORF3a42P42LcCtcTt33B.1.1.630.001157
ORF3a42P42delCCT---33B.1.160.240.013274
ORF3a42P42SCctTct33B.1.177.70.000495
ORF3a42P42TCctAct33B.1.20.000026
ORF3a42P42del1ccTcc-33B.1.20.000026
ORF3a42P42SCctTct33B.1.2580.0002
ORF3a42P42LcCtcTt33B.1.3240.004815
ORF3a42P42HcCtcAt33B.1.3510.000089
ORF3a42P42SCctTct33B.1.3510.000089
ORF3a42P42delCCT---33B.1.4270.000151
ORF3a42P42LcCtcTt33B.1.5330.028846
ORF3a42P42LcCtcTt33B.1.5490.021583
ORF3a42P42LcCtcTt33B.1.5750.00091
ORF3a42P42RcCtcGt33B.1.617.20.000011
ORF3a42P42LcCtcTt33B.1.6280.001057
ORF3a42P42LcCtcTt33B.400.001093
ORF3a42P42PccTccA33D.20.000225
ORF3a42P42PccTccC33P.10.000047
ORF3a42P42PccTccG23P.20.000373
ORF3a42P42PccTccC13P.20.000187
ORF3a42P42PccTccC33Q.80.000495
ORF3a42P42delCCT---33U.30.011583
ORF3a42P42LcCtcTt22A.23.10.001408
ORF3a42P42ACctGct22A.250.036364
ORF3a42P42PccTccC22AY.10.000791
ORF3a42P42del1ccTcc-22AY.1000.000092
ORF3a42P42del1ccTcc-22AY.1030.000012
ORF3a42P42PccTccC22AY.1050.001286
ORF3a42P42SCctTct22AY.1070.000932
ORF3a42P42SCctTct22AY.1110.000366
ORF3a42P42LcCtcTt22AY.1130.000285
ORF3a42P42FCCtTTt22AY.120.000632
ORF3a42P42PccTccC22AY.1210.000271
ORF3a42P42delCCT---22AY.130.000322
ORF3a42P42LcCtcTt22AY.130.000322
ORF3a42P42LcCtcTt22AY.16.10.00094
ORF3a42P42SCctTct22AY.230.000139
ORF3a42P42SCctTct22AY.270.000129
ORF3a42P42PccTccC12AY.270.000065
ORF3a42P42PccTccG12AY.270.000065
ORF3a42P42LcCtcTt22AY.280.003781
ORF3a42P42delCCT---22AY.290.000032
ORF3a42P42LcCtcTt22AY.300.000791
ORF3a42P42HcCtcAt22AY.330.000134
ORF3a42P42PccTccC22AY.340.000194
ORF3a42P42TCctAct22AY.390.000049
ORF3a42P42del1ccTcc-22AY.39.10.000079
ORF3a42P42TCctAct22AY.40.000003
ORF3a42P42HcCtcAt22AY.4.20.000043
ORF3a42P42SCctTct22AY.4.40.000818
ORF3a42P42SCctTct22AY.400.001929
ORF3a42P42HcCtcAt22AY.420.00008
ORF3a42P42del1ccTcc-22AY.430.000009
ORF3a42P42RcCtcGt22AY.440.000012
ORF3a42P42delCCT---22AY.460.000208
ORF3a42P42PccTccC22AY.46.10.002053
ORF3a42P42delCCT---22AY.46.20.001271
ORF3a42P42LcCtcTt22AY.480.00093
ORF3a42P42PccTccC22AY.5.30.000675
ORF3a42P42LcCtcTt22AY.530.000575
ORF3a42P42delCCT---22AY.60.000082
ORF3a42P42SCctTct22AY.620.000871
ORF3a42P42SCctTct22AY.630.000774
ORF3a42P42delCCT---22AY.670.000929
ORF3a42P42PccTccC22AY.680.000547
ORF3a42P42LcCtcTt22AY.690.000373
ORF3a42P42PccTccC22AY.700.000417
ORF3a42P42LcCtcTt22AY.740.000231
ORF3a42P42PccTccC22AY.750.000112
ORF3a42P42del2cCTc--22AY.750.000112
ORF3a42P42LcCtcTt22AY.75.10.000361
ORF3a42P42SCctTct22AY.75.10.000361
ORF3a42P42PccTccC22AY.75.10.000361
ORF3a42P42PccTccC22AY.780.003082
ORF3a42P42delCCT---22AY.810.003984
ORF3a42P42LcCtcTt22AY.880.001768
ORF3a42P42SCctTct22AY.9.10.000167
ORF3a42P42LcCtcTt22AY.900.001369
ORF3a42P42LcCtcTt22AY.910.001461
ORF3a42P42SCctTct22AY.920.000575
ORF3a42P42PccTccC22AY.960.004149
ORF3a42P42LcCtcTt22AY.960.004149
ORF3a42P42LcCtcTt22AY.980.000158
ORF3a42P42SCctTct22AY.980.000158
ORF3a42P42SCctTct22B0.000256
ORF3a42P42del1ccTcc-22B.10.000018
ORF3a42P42TCctAct22B.10.000018
ORF3a42P42SCctTct22B.1.1.2070.002364
ORF3a42P42LcCtcTt22B.1.1.2220.000408
ORF3a42P42LcCtcTt22B.1.1.250.001137
ORF3a42P42LcCtcTt22B.1.1.2730.013514
ORF3a42P42LcCtcTt22B.1.1.2770.001517
ORF3a42P42PccTccC22B.1.1.2880.003831
ORF3a42P42SCctTct22B.1.1.3050.007722
ORF3a42P42LcCtcTt22B.1.1.3070.005063
ORF3a42P42SCctTct22B.1.1.3170.000823
ORF3a42P42LcCtcTt22B.1.1.3180.000604
ORF3a42P42LcCtcTt22B.1.1.3690.000892
ORF3a42P42SCctTct22B.1.1.370.000386
ORF3a42P42delCCT---22B.1.1.5190.000079
ORF3a42P42SCctTct22B.1.1.5190.000079
ORF3a42P42LcCtcTt22B.1.1.5280.009615
ORF3a42P42RcCtcGt22B.1.1.70.000002
ORF3a42P42ACctGct22B.1.1.70.000002
ORF3a42P42SCctTct22B.1.160.160.001859
ORF3a42P42delCCT---22B.1.160.330.00885
ORF3a42P42PccTccC22B.1.177.210.000153
ORF3a42P42TCctAct22B.1.177.320.002699
ORF3a42P42PccTccC22B.1.177.410.005
ORF3a42P42delCCT---22B.1.177.600.000437
ORF3a42P42LcCtcTt22B.1.2140.007326
ORF3a42P42LcCtcTt22B.1.2340.000264
ORF3a42P42LcCtcTt22B.1.2350.005038
ORF3a42P42LcCtcTt22B.1.243.10.044444
ORF3a42P42RcCtcGt22B.1.2470.029851
ORF3a42P42LcCtcTt22B.1.2800.014286
ORF3a42P42LcCtcTt22B.1.3110.000549
ORF3a42P42LcCtcTt22B.1.3360.004878
ORF3a42P42PccTccC22B.1.3510.000059
ORF3a42P42LcCtcTt22B.1.3560.003454
ORF3a42P42LcCtcTt22B.1.36.180.00084
ORF3a42P42TCctAct22B.1.36.360.001204
ORF3a42P42LcCtcTt22B.1.3670.001585
ORF3a42P42LcCtcTt22B.1.3690.00057
ORF3a42P42LcCtcTt22B.1.3750.001639
ORF3a42P42LcCtcTt22B.1.4130.008511
ORF3a42P42LcCtcTt22B.1.438.10.000215
ORF3a42P42HcCtcAt22B.1.4620.014493
ORF3a42P42delCCT---22B.1.4710.005464
ORF3a42P42delCCT---22B.1.5250.000226
ORF3a42P42LcCtcTt22B.1.5760.001813
ORF3a42P42LcCtcTt22B.1.5770.001375
ORF3a42P42delCCT---22B.1.6210.000177
ORF3a42P42LcCtcTt22B.1.6350.035088
ORF3a42P42LcCtcTt22B.3.10.003317
ORF3a42P42delCCT---22D.20.00015
ORF3a42P42SCctTct22D.20.00015
ORF3a42P42RcCtcGt22P.10.000032
ORF3a42P42LcCtcTt22P.1.150.000465
ORF3a42P42SCctTct11A.110.058824
ORF3a42P42PccTccG11A.20.000662
ORF3a42P42delCCT---11A.2.30.004739
ORF3a42P42SCctTct11A.2.50.000499
ORF3a42P42PccTccC11A.270.001656
ORF3a42P42ACctGct11AA.40.009091
ORF3a42P42delCCT---11AH.30.003802
ORF3a42P42YCCtTAt11All0
ORF3a42P42LcCtcTt11AP.10.001502
ORF3a42P42del1ccTcc-11AP.10.001502
ORF3a42P42LcCtcTt11AT.10.005128
ORF3a42P42LcCtcTt11AY.10.000396
ORF3a42P42LcCtcTt11AY.100.00053
ORF3a42P42SCctTct11AY.1000.000046
ORF3a42P42PccTccC11AY.1000.000046
ORF3a42P42RcCtcGt11AY.1000.000046
ORF3a42P42delCCT---11AY.1020.000027
ORF3a42P42HcCtcAt11AY.1020.000027
ORF3a42P42del2CCT--N11AY.1030.000006
ORF3a42P42ACctGct11AY.1030.000006
ORF3a42P42HcCtcAt11AY.1030.000006
ORF3a42P42LcCtcTt11AY.1040.001984
ORF3a42P42LcCtcTt11AY.1050.000643
ORF3a42P42PccTccA11AY.1070.000466
ORF3a42P42LcCtcTt11AY.1080.001103
ORF3a42P42SCctTct11AY.1090.00074
ORF3a42P42HcCtcAt11AY.1110.000183
ORF3a42P42delCCT---11AY.1110.000183
ORF3a42P42delCCT---11AY.1130.000142
ORF3a42P42PccTccC11AY.1140.000231
ORF3a42P42LcCtcTt11AY.1140.000231
ORF3a42P42delCCT---11AY.1140.000231
ORF3a42P42SCctTct11AY.116.10.000311
ORF3a42P42delCCT---11AY.1170.000085
ORF3a42P42SCctTct11AY.1180.000063
ORF3a42P42delCCT---11AY.1180.000063
ORF3a42P42del1ccTcc-11AY.1190.000035
ORF3a42P42ACctGct11AY.1190.000035
ORF3a42P42LcCtcTt11AY.120.20.001285
ORF3a42P42ACctGct11AY.1210.000135
ORF3a42P42SCctTct11AY.130.000161
ORF3a42P42del1ccTcc-11AY.140.000088
ORF3a42P42PccTccC11AY.160.00038
ORF3a42P42LcCtcTt11AY.160.00038
ORF3a42P42HcCtcAt11AY.160.00038
ORF3a42P42PccTccC11AY.190.00114
ORF3a42P42HcCtcAt11AY.20.000356
ORF3a42P42SCctTct11AY.220.002092
ORF3a42P42HcCtcAt11AY.230.00007
ORF3a42P42delCCT---11AY.230.00007
ORF3a42P42del2cCTc--11AY.230.00007
ORF3a42P42SCctTct11AY.23.10.000417
ORF3a42P42PccTccC11AY.260.000028
ORF3a42P42HcCtcAt11AY.260.000028
ORF3a42P42HcCtcAt11AY.270.000065
ORF3a42P42delCCT---11AY.280.00189
ORF3a42P42HcCtcAt11AY.290.000016
ORF3a42P42PccTccC11AY.290.000016
ORF3a42P42delCCT---11AY.29.10.000221
ORF3a42P42LcCtcTt11AY.29.10.000221
ORF3a42P42HcCtcAt11AY.30.00001
ORF3a42P42LcCtcTt11AY.3.10.000085
ORF3a42P42delCCT---11AY.330.000067
ORF3a42P42LcCtcTt11AY.370.000316
ORF3a42P42delCCT---11AY.380.000499
ORF3a42P42SCctTct11AY.380.000499
ORF3a42P42ACctGct11AY.390.000025
ORF3a42P42HcCtcAt11AY.39.10.00004
ORF3a42P42SCctTct11AY.39.1.10.000725
ORF3a42P42ACctGct11AY.40.000002
ORF3a42P42SCctTct11AY.4.20.000022
ORF3a42P42LcCtcTt11AY.4.50.000107
ORF3a42P42RcCtcGt11AY.4.50.000107
ORF3a42P42SCctTct11AY.410.000294
ORF3a42P42PccTccC11AY.420.00004
ORF3a42P42TCctAct11AY.440.000006
ORF3a42P42SCctTct11AY.450.000122
ORF3a42P42LcCtcTt11AY.46.20.000635
ORF3a42P42PccTccC11AY.46.20.000635
ORF3a42P42SCctTct11AY.46.30.000934
ORF3a42P42LcCtcTt11AY.46.40.000165
ORF3a42P42SCctTct11AY.46.40.000165
ORF3a42P42LcCtcTt11AY.46.60.000072
ORF3a42P42PccTccC11AY.46.60.000072
ORF3a42P42PccTccG11AY.470.000031
ORF3a42P42PccTccC11AY.480.000465
ORF3a42P42PccTccC11AY.490.003195
ORF3a42P42SCctTct11AY.50.000021
ORF3a42P42delCCT---11AY.50.000021
ORF3a42P42SCctTct11AY.5.40.000277
ORF3a42P42PccTccC11AY.500.000799
ORF3a42P42LcCtcTt11AY.500.000799
ORF3a42P42SCctTct11AY.540.000095
ORF3a42P42LcCtcTt11AY.540.000095
ORF3a42P42PccTccC11AY.550.000917
ORF3a42P42LcCtcTt11AY.560.001605
ORF3a42P42PccTccC11AY.570.000656
ORF3a42P42PccTccC11AY.580.000907
ORF3a42P42delCCT---11AY.590.00053
ORF3a42P42RcCtcGt11AY.60.000041
ORF3a42P42SCctTct11AY.60.000041
ORF3a42P42PccTccC11AY.610.000105
ORF3a42P42delCCT---11AY.650.000533
ORF3a42P42LcCtcTt11AY.670.000464
ORF3a42P42PccTccC11AY.670.000464
ORF3a42P42SCctTct11AY.680.000274
ORF3a42P42delCCT---11AY.70.000196
ORF3a42P42PccTccC11AY.710.000475
ORF3a42P42LcCtcTt11AY.730.000665
ORF3a42P42delCCT---11AY.75.10.00018
ORF3a42P42LcCtcTt11AY.760.004831
ORF3a42P42LcCtcTt11AY.780.001541
ORF3a42P42LcCtcTt11AY.820.001357
ORF3a42P42delCCT---11AY.840.000437
ORF3a42P42PccTccC11AY.890.004902
ORF3a42P42LcCtcTt11AY.890.004902
ORF3a42P42del1ccTcc-11AY.90.000068
ORF3a42P42SCctTct11AY.90.000068
ORF3a42P42LcCtcTt11AY.90.000068
ORF3a42P42LcCtcTt11AY.9.10.000084
ORF3a42P42delCCT---11AY.9.20.000037
ORF3a42P42delCCT---11AY.900.000684
ORF3a42P42delCCT---11AY.910.00073
ORF3a42P42SCctTct11AY.910.00073
ORF3a42P42HcCtcAt11AY.910.00073
ORF3a42P42PccTccC11AY.920.000287
ORF3a42P42LcCtcTt11AY.920.000287
ORF3a42P42delCCT---11AY.930.000273
ORF3a42P42PccTccG11AY.940.000443
ORF3a42P42LcCtcTt11AY.950.000761
ORF3a42P42del1ccTcc-11AY.980.000079
ORF3a42P42YCCtTAt11AY.990.001049
ORF3a42P42SCctTct11AY.990.001049
ORF3a42P42PccTccC11AY.990.001049
ORF3a42P42delCCT---11AY.99.20.000092
ORF3a42P42PccTccA11AY.99.20.000092
ORF3a42P42SCctTct11AZ.10.000867
ORF3a42P42delCCT---11B0.000128
ORF3a42P42PccTccA11B0.000128
ORF3a42P42TCctAct11B.1.10.000018
ORF3a42P42del2cCTc--11B.1.10.000018
ORF3a42P42HcCtcAt11B.1.1.1010.01
ORF3a42P42SCctTct11B.1.1.1170.009709
ORF3a42P42SCctTct11B.1.1.1390.022727
ORF3a42P42LcCtcTt11B.1.1.1410.002012
ORF3a42P42SCctTct11B.1.1.1590.004673
ORF3a42P42LcCtcTt11B.1.1.1760.000439
ORF3a42P42PccTccC11B.1.1.1920.002309
ORF3a42P42SCctTct11B.1.1.1920.002309
ORF3a42P42del1ccTcc-11B.1.1.2140.000055
ORF3a42P42delCCT---11B.1.1.2250.007194
ORF3a42P42LcCtcTt11B.1.1.2430.004082
ORF3a42P42LcCtcTt11B.1.1.2660.012195
ORF3a42P42LcCtcTt11B.1.1.270.00565
ORF3a42P42LcCtcTt11B.1.1.2790.001121
ORF3a42P42delCCT---11B.1.1.280.000311
ORF3a42P42LcCtcTt11B.1.1.2940.001266
ORF3a42P42LcCtcTt11B.1.1.3010.001179
ORF3a42P42LcCtcTt11B.1.1.3050.003861
ORF3a42P42LcCtcTt11B.1.1.3060.000438
ORF3a42P42SCctTct11B.1.1.3060.000438
ORF3a42P42HcCtcAt11B.1.1.3060.000438
ORF3a42P42LcCtcTt11B.1.1.3080.011765
ORF3a42P42SCctTct11B.1.1.3110.000358
ORF3a42P42HcCtcAt11B.1.1.3180.000302
ORF3a42P42delCCT---11B.1.1.330.000421
ORF3a42P42LcCtcTt11B.1.1.330.000421
ORF3a42P42LcCtcTt11B.1.1.340.013158
ORF3a42P42HcCtcAt11B.1.1.340.013158
ORF3a42P42LcCtcTt11B.1.1.3540.004386
ORF3a42P42PccTccC11B.1.1.3550.015385
ORF3a42P42PccTccC11B.1.1.3690.000446
ORF3a42P42PccTccC11B.1.1.3710.010417
ORF3a42P42LcCtcTt11B.1.1.3720.000689
ORF3a42P42PccTccC11B.1.1.3880.045455
ORF3a42P42RcCtcGt11B.1.1.390.00051
ORF3a42P42PccTccC11B.1.1.390.00051
ORF3a42P42delCCT---11B.1.1.4090.002833
ORF3a42P42LcCtcTt11B.1.1.4340.000349
ORF3a42P42LcCtcTt11B.1.1.440.00241
ORF3a42P42SCctTct11B.1.1.4480.002033
ORF3a42P42SCctTct11B.1.1.4640.001473
ORF3a42P42LcCtcTt11B.1.1.500.000679
ORF3a42P42FCCtTTt11B.1.1.5190.00004
ORF3a42P42LcCtcTt11B.1.1.5230.001563
ORF3a42P42SCctTct11B.1.1.5240.020833
ORF3a42P42LcCtcTt11B.1.1.5240.020833
ORF3a42P42LcCtcTt11B.1.1.700.000341
ORF3a42P42LcCtcTt11B.1.1.890.006061
ORF3a42P42HcCtcAt11B.1.1.890.006061
ORF3a42P42LcCtcTt11B.1.1100.004525
ORF3a42P42LcCtcTt11B.1.1280.000635
ORF3a42P42LcCtcTt11B.1.1570.002985
ORF3a42P42delCCT---11B.1.1600.000031
ORF3a42P42PccTccC11B.1.1600.000031
ORF3a42P42LcCtcTt11B.1.160.230.004831
ORF3a42P42PccTccA11B.1.177.100.000878
ORF3a42P42SCctTct11B.1.177.110.001698
ORF3a42P42del1ccTcc-11B.1.177.210.000076
ORF3a42P42RcCtcGt11B.1.177.210.000076
ORF3a42P42LcCtcTt11B.1.177.350.000691
ORF3a42P42SCctTct11B.1.177.40.000211
ORF3a42P42HcCtcAt11B.1.177.420.000894
ORF3a42P42SCctTct11B.1.177.440.000519
ORF3a42P42LcCtcTt11B.1.177.570.000281
ORF3a42P42delCCT---11B.1.177.60.000977
ORF3a42P42SCctTct11B.1.177.730.000566
ORF3a42P42PccTccC11B.1.177.810.000189
ORF3a42P42LcCtcTt11B.1.1900.01
ORF3a42P42LcCtcTt11B.1.1950.005025
ORF3a42P42FCCtTTt11B.1.20.000009
ORF3a42P42PccTccC11B.1.2100.002132
ORF3a42P42TCctAct11B.1.2210.000071
ORF3a42P42delCCT---11B.1.2210.000071
ORF3a42P42TCctAct11B.1.2340.000132
ORF3a42P42LcCtcTt11B.1.2370.004975
ORF3a42P42HcCtcAt11B.1.2390.001221
ORF3a42P42SCctTct11B.1.2400.000216
ORF3a42P42delCCT---11B.1.2410.000812
ORF3a42P42SCctTct11B.1.2430.00007
ORF3a42P42HcCtcAt11B.1.2580.000067
ORF3a42P42LcCtcTt11B.1.2580.000067
ORF3a42P42LcCtcTt11B.1.2930.0125
ORF3a42P42LcCtcTt11B.1.3200.001245
ORF3a42P42LcCtcTt11B.1.3380.008621
ORF3a42P42SCctTct11B.1.3460.001311
ORF3a42P42ACctGct11B.1.3490.000715
ORF3a42P42SCctTct11B.1.3500.002933
ORF3a42P42LcCtcTt11B.1.3500.002933
ORF3a42P42LcCtcTt11B.1.351.20.000303
ORF3a42P42LcCtcTt11B.1.360.000146
ORF3a42P42SCctTct11B.1.360.000146
ORF3a42P42TCctAct11B.1.360.000146
ORF3a42P42RcCtcGt11B.1.36.10.00114
ORF3a42P42SCctTct11B.1.36.160.001425
ORF3a42P42HcCtcAt11B.1.36.180.00042
ORF3a42P42del2cCTc--11B.1.36.240.006173
ORF3a42P42SCctTct11B.1.36.360.000602
ORF3a42P42LcCtcTt11B.1.36.380.001642
ORF3a42P42PccTccC11B.1.36.390.002217
ORF3a42P42PccTccC11B.1.3670.000792
ORF3a42P42SCctTct11B.1.3960.000706
ORF3a42P42ACctGct11B.1.3980.002976
ORF3a42P42SCctTct11B.1.3990.001934
ORF3a42P42SCctTct11B.1.4130.004255
ORF3a42P42LcCtcTt11B.1.4280.00102
ORF3a42P42del1ccTcc-11B.1.4290.000024
ORF3a42P42LcCtcTt11B.1.4360.001029
ORF3a42P42SCctTct11B.1.438.10.000107
ORF3a42P42SCctTct11B.1.4560.003268
ORF3a42P42TCctAct11B.1.466.20.000391
ORF3a42P42LcCtcTt11B.1.4700.001404
ORF3a42P42SCctTct11B.1.4700.001404
ORF3a42P42LcCtcTt11B.1.4970.000315
ORF3a42P42LcCtcTt11B.1.4990.00105
ORF3a42P42SCctTct11B.1.499.10.111111
ORF3a42P42SCctTct11B.1.5090.000866
ORF3a42P42TCctAct11B.1.5170.000427
ORF3a42P42LcCtcTt11B.1.5240.001406
ORF3a42P42HcCtcAt11B.1.5250.000113
ORF3a42P42LcCtcTt11B.1.5250.000113
ORF3a42P42SCctTct11B.1.5480.035714
ORF3a42P42LcCtcTt11B.1.5500.013699
ORF3a42P42LcCtcTt11B.1.5510.00129
ORF3a42P42LcCtcTt11B.1.5580.004566
ORF3a42P42SCctTct11B.1.5600.00463
ORF3a42P42delCCT---11B.1.5630.016949
ORF3a42P42LcCtcTt11B.1.5650.00081
ORF3a42P42HcCtcAt11B.1.5660.019231
ORF3a42P42LcCtcTt11B.1.5670.003333
ORF3a42P42LcCtcTt11B.1.5680.001111
ORF3a42P42LcCtcTt11B.1.5740.002151
ORF3a42P42LcCtcTt11B.1.5800.004065
ORF3a42P42SCctTct11B.1.5870.001898
ORF3a42P42SCctTct11B.1.5950.000261
ORF3a42P42LcCtcTt11B.1.5950.000261
ORF3a42P42del1ccTcc-11B.1.5960.000087
ORF3a42P42SCctTct11B.1.5960.000087
ORF3a42P42HcCtcAt11B.1.5960.000087
ORF3a42P42PccTccC11B.1.5960.000087
ORF3a42P42HcCtcAt11B.1.5990.00365
ORF3a42P42SCctTct11B.1.6050.005952
ORF3a42P42PccTccA11B.1.6210.000089
ORF3a42P42SCctTct11B.1.6280.000352
ORF3a42P42LcCtcTt11B.1.6380.052632
ORF3a42P42delCCT---11B.1.6380.052632
ORF3a42P42RcCtcGt11B.1.90.006173
ORF3a42P42LcCtcTt11B.1.90.006173
ORF3a42P42LcCtcTt11B.40.002208
ORF3a42P42LcCtcTt11B.530.011765
ORF3a42P42SCctTct11B.550.00295
ORF3a42P42LcCtcTt11B.550.00295
ORF3a42P42TCctAct11B.60.00091
ORF3a42P42HcCtcAt11B.60.00091
ORF3a42P42PccTccC11C.2.10.006667
ORF3a42P42LcCtcTt11C.36.30.000567
ORF3a42P42delCCT---11C.370.000116
ORF3a42P42PccTccC11C.370.000116
ORF3a42P42SCctTct11N.50.001767
ORF3a42P42LcCtcTt11P.1.120.000484
ORF3a42P42LcCtcTt11P.1.130.000898
ORF3a42P42SCctTct11P.1.140.000048
ORF3a42P42delCCT---11P.1.140.000048
ORF3a42P42delCCT---11P.1.150.000232
ORF3a42P42RcCtcGt11P.1.150.000232
ORF3a42P42delCCT---11P.1.160.000374
ORF3a42P42LcCtcTt11P.1.40.000977
ORF3a42P42delCCT---11P.1.60.001946
ORF3a42P42SCctTct11Q.10.000126
ORF3a42P42ACctGct11Q.10.000126
ORF3a42P42TCctAct11Q.30.000145
ORF3a42P42HcCtcAt11Q.80.000165
ORF3a42P42LcCtcTt11R.10.00009
ORF3a42P42SCctTct11W.30.005263