CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 40

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a40S40LnonsyntCatTa794979450.99949725510-25512
ORF3a40S40LnonsyntCAtTG794930.00037740625510-25512
ORF3a40S40LnonsynTCaCTa794910.00012580225510-25512
ORF3a40S40PnonsynTcaCca15001500125510-25512
ORF3a40S40deldelTCA---780780125510-25512
ORF3a40S40SsyntcAtcG3491620.46418325510-25512
ORF3a40S40SsyntcAtcC349990.28366825510-25512
ORF3a40S40SsyntcAtcT349880.25214925510-25512
ORF3a40S40AnonsynTcaGca2102090.99523825510-25512
ORF3a40S40AnonsynTcAGcC21010.004761925510-25512
ORF3a40S40TnonsynTcaAca106106125510-25512
ORF3a40S40XnonsyntCatGa19150.78947425510-25512
ORF3a40S40XnonsyntCatAa1940.21052625510-25512
ORF3a40S40del1deltcAtc-640.66666725510-25512
ORF3a40S40del1deltCat-a620.33333325510-25512
ORF3a40S40CnonsyntCAtGC22125510-25512
ORF3a40S40del2delTCA--N11125510-25512
ORF3a40S40KnonsynTCaAAa11125510-25512
ORF3a40S40InonsynTCaATa11125510-25512

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a40S40LtCatTa79457949All0.00152
ORF3a40S40LtCAtTG37949All0.000001
ORF3a40S40LTCaCTa17949All0
ORF3a40S40LtCatTa21232123B.1.1.70.001901
ORF3a40S40PTcaCca15001500All0.000287
ORF3a40S40PTcaCca836836B.1.617.20.003148
ORF3a40S40delTCA---780780All0.000149
ORF3a40S40LtCatTa746746AY.40.001161
ORF3a40S40LtCatTa594594B.10.005441
ORF3a40S40LtCatTa362362P.1.140.017304
ORF3a40S40LtCatTa357357AY.440.002173
ORF3a40S40StcAtcG162349All0.000031
ORF3a40S40StcAtcC99349All0.000019
ORF3a40S40StcAtcT88349All0.000017
ORF3a40S40LtCatTa263263AY.430.001165
ORF3a40S40LtCatTa219220B.1.617.20.000825
ORF3a40S40LTCaCTa1220B.1.617.20.000004
ORF3a40S40ATcaGca209210All0.00004
ORF3a40S40ATcAGcC1210All0
ORF3a40S40PTcaCca201201AY.50.00415
ORF3a40S40delTCA---192192AY.260.005436
ORF3a40S40LtCatTa186186B.1.20.001638
ORF3a40S40LtCatTa172172B.1.6260.982857
ORF3a40S40LtCatTa161161AY.1030.001
ORF3a40S40delTCA---153153B.1.6300.801047
ORF3a40S40LtCatTa147147B.1.1770.001936
ORF3a40S40LtCatTa133133AY.250.0008
ORF3a40S40LtCatTa121121AY.46.40.019905
ORF3a40S40ATcaGca120120B.1.1.70.000107
ORF3a40S40TTcaAca106106All0.00002
ORF3a40S40LtCatTa101101B.1.258.170.010501
ORF3a40S40LtCatTa9698B.1.4290.002259
ORF3a40S40LtCAtTG298B.1.4290.000047
ORF3a40S40LtCatTa9292B.1.5250.010411
ORF3a40S40LtCatTa8383B.1.2580.005523
ORF3a40S40LtCatTa7171AY.30.000706
ORF3a40S40LtCatTa7171P.10.001119
ORF3a40S40PTcaCca7070AY.430.00031
ORF3a40S40LtCatTa6565B.1.1.1700.081047
ORF3a40S40StcAtcG2463B.1.1.70.000021
ORF3a40S40StcAtcC2163B.1.1.70.000019
ORF3a40S40StcAtcT1863B.1.1.70.000016
ORF3a40S40LtCatTa5858C.40.58
ORF3a40S40LtCatTa5757AY.7.20.031879
ORF3a40S40PTcaCca5555AY.250.000331
ORF3a40S40delTCA---5454B.1.177.820.025776
ORF3a40S40LtCatTa5454B.1.258.140.052941
ORF3a40S40PTcaCca4949B.1.1.70.000044
ORF3a40S40LtCatTa4848B.1.10.000871
ORF3a40S40delTCA---4848B.1.1.70.000043
ORF3a40S40PTcaCca4747AY.40.000073
ORF3a40S40delTCA---4444AY.430.000195
ORF3a40S40LtCatTa4343B.1.3041
ORF3a40S40LtCatTa4141B.1.5260.000964
ORF3a40S40LtCatTa3939B.1.2430.002714
ORF3a40S40StcAtcG3838B.1.4290.000894
ORF3a40S40LtCatTa3737AY.460.003851
ORF3a40S40LtCatTa3737B.1.1.5190.001469
ORF3a40S40LtCatTa3636AY.290.000568
ORF3a40S40TTcaAca3636B.1.5160.07045
ORF3a40S40delTCA---3535B.1.1770.000461
ORF3a40S40LtCatTa3434AY.390.00084
ORF3a40S40StcAtcG1834AY.40.000028
ORF3a40S40StcAtcT1034AY.40.000016
ORF3a40S40StcAtcC634AY.40.000009
ORF3a40S40LtCatTa3434AY.450.004137
ORF3a40S40LtCatTa3333B.1.3460.04325
ORF3a40S40LtCatTa3333B.1.3510.000981
ORF3a40S40LtCatTa3131B.1.438.10.003325
ORF3a40S40LtCatTa3030AY.1020.000795
ORF3a40S40delTCA---3030AY.40.000047
ORF3a40S40LtCatTa3030B.1.1.4340.010457
ORF3a40S40LtCatTa2828B.1.1.2790.03139
ORF3a40S40LtCatTa2727AY.4.20.000586
ORF3a40S40StcAtcT1427AY.430.000062
ORF3a40S40StcAtcC1327AY.430.000058
ORF3a40S40LtCatTa2727B.1.4270.001363
ORF3a40S40LtCatTa2525B.1.1600.00078
ORF3a40S40delTCA---2323B.1.10.000417
ORF3a40S40StcAtcG2122AY.440.000128
ORF3a40S40StcAtcT122AY.440.000006
ORF3a40S40TTcaAca2121AY.40.000033
ORF3a40S40delTCA---2020AY.250.00012
ORF3a40S40LtCatTa2020AY.330.001336
ORF3a40S40PTcaCca2020AY.560.032103
ORF3a40S40LtCatTa2020P.1.150.004647
ORF3a40S40XtCatGa1519All0.000003
ORF3a40S40XtCatAa419All0.000001
ORF3a40S40ATcaGca1919AY.1130.002705
ORF3a40S40LtCatTa1818AY.470.00056
ORF3a40S40LtCatTa1818AY.610.001886
ORF3a40S40StcAtcT1618B.1.177.600.003495
ORF3a40S40StcAtcC218B.1.177.600.000437
ORF3a40S40StcAtcT1118B.1.617.20.000041
ORF3a40S40StcAtcC418B.1.617.20.000015
ORF3a40S40StcAtcG318B.1.617.20.000011
ORF3a40S40LtCatTa1818B.1.6380.947368
ORF3a40S40delTCA---1818P.10.000284
ORF3a40S40PTcaCca1818P.1.70.005747
ORF3a40S40LtCatTa1717AY.200.000661
ORF3a40S40LtCatTa1717AY.230.001186
ORF3a40S40StcAtcG1717AY.260.000481
ORF3a40S40LtCatTa1717AY.270.0011
ORF3a40S40LtCatTa1717AY.4.2.10.002533
ORF3a40S40PTcaCca1717AY.440.000103
ORF3a40S40LtCatTa1616AY.50.00033
ORF3a40S40LtCatTa1616B.1.1.980.296296
ORF3a40S40ATcaGca1616B.1.20.000141
ORF3a40S40LtCatTa1515B.1.36.180.006303
ORF3a40S40LtCatTa1515P.1.120.00726
ORF3a40S40ATcaGca1515Q.10.001895
ORF3a40S40PTcaCca1414AY.1030.000087
ORF3a40S40LtCatTa1414B.1.4250.041916
ORF3a40S40PTcaCca1414B.1.5770.009622
ORF3a40S40LtCatTa1414B.1.6210.001239
ORF3a40S40LtCatTa1313AY.1000.000598
ORF3a40S40LtCatTa1313AY.1130.001851
ORF3a40S40ATcaGca1313AY.230.000907
ORF3a40S40LtCatTa1313B.1.1.460.056769
ORF3a40S40LtCatTa1212AY.1210.001624
ORF3a40S40StcAtcC1012AY.30.000099
ORF3a40S40StcAtcG112AY.30.00001
ORF3a40S40StcAtcT112AY.30.00001
ORF3a40S40StcAtcC1212AY.98.10.000581
ORF3a40S40LtCatTa1212B0.001534
ORF3a40S40PTcaCca1212B.10.00011
ORF3a40S40LtCatTa1212B.1.1.280.003735
ORF3a40S40LtCatTa1212B.1.177.20.054545
ORF3a40S40delTCA---1212B.1.617.20.000045
ORF3a40S40PTcaCca1212C.350.009288
ORF3a40S40LtCatTa1111AY.1110.002015
ORF3a40S40PTcaCca1111AY.390.000272
ORF3a40S40LtCatTa1111B.1.1.3740.026128
ORF3a40S40LtCatTa1111P.20.002053
ORF3a40S40LtCatTa1010AY.1180.000626
ORF3a40S40TTcaAca1010B.1.1.70.000009
ORF3a40S40LtCatTa1010D.20.00075
ORF3a40S40PTcaCca1010Q.30.00145
ORF3a40S40LtCatTa99AY.540.000858
ORF3a40S40LtCatTa99AY.99.20.000829
ORF3a40S40LtCatTa99B.1.2210.000639
ORF3a40S40delTCA---99B.1.2580.000599
ORF3a40S40LtCatTa99B.1.36.290.004656
ORF3a40S40LtCatTa99B.1.5960.000784
ORF3a40S40LtCatTa99R.10.00081
ORF3a40S40delTCA---88AY.1030.00005
ORF3a40S40LtCatTa88AY.260.000226
ORF3a40S40LtCatTa88AY.4.30.006734
ORF3a40S40LtCatTa88AY.9.10.00067
ORF3a40S40LtCatTa88AY.9.20.000294
ORF3a40S40PTcaCca88B.1.10.000145
ORF3a40S40StcAtcG88B.1.160.100.064516
ORF3a40S40TTcaAca88B.1.177.620.009535
ORF3a40S40LtCatTa88B.1.214.20.004796
ORF3a40S40LtCatTa77AY.1090.005178
ORF3a40S40PTcaCca77AY.1160.002007
ORF3a40S40LtCatTa77AY.1170.000592
ORF3a40S40LtCatTa77AY.140.000616
ORF3a40S40LtCatTa77AY.360.001037
ORF3a40S40delTCA---77AY.390.000173
ORF3a40S40LtCatTa77AY.46.60.000505
ORF3a40S40StcAtcG77AY.700.00146
ORF3a40S40PTcaCca77B.1.1.4271
ORF3a40S40LtCatTa77B.1.177.410.0175
ORF3a40S40LtCatTa77B.1.177.690.010386
ORF3a40S40LtCatTa77B.1.36.10.007982
ORF3a40S40LtCatTa77B.1.4700.009831
ORF3a40S40LtCatTa77B.1.617.10.000903
ORF3a40S40LtCatTa77B.6.60.006222
ORF3a40S40LtCatTa77Q.80.001154
ORF3a40S40del1tcAtc-46All0.000001
ORF3a40S40del1tCat-a26All0
ORF3a40S40LtCatTa66AY.1200.000223
ORF3a40S40TTcaAca66AY.200.000233
ORF3a40S40LtCatTa66AY.3.10.000512
ORF3a40S40delTCA---66AY.440.000037
ORF3a40S40LtCatTa66AY.680.001642
ORF3a40S40LtCatTa66B.1.1.1210.014563
ORF3a40S40XtCatGa56B.1.1.70.000004
ORF3a40S40XtCatAa16B.1.1.70.000001
ORF3a40S40LtCatTa66B.1.177.70.000989
ORF3a40S40LtCatTa66B.1.177.810.001136
ORF3a40S40LtCatTa66B.1.3690.001711
ORF3a40S40LtCatTa66B.1.3910.006764
ORF3a40S40LtCatTa66B.1.4160.007614
ORF3a40S40XtCatGa66B.1.5250.000679
ORF3a40S40PTcaCca66B.1.6210.000531
ORF3a40S40LtCatTa66C.300.010363
ORF3a40S40StcAtcT45AY.250.000024
ORF3a40S40StcAtcG15AY.250.000006
ORF3a40S40LtCatTa55AY.620.002179
ORF3a40S40delTCA---55B.10.000046
ORF3a40S40LtCatTa55B.1.1.10.001633
ORF3a40S40StcAtcC55B.1.1.2140.000277
ORF3a40S40LtCatTa55B.1.177.210.000382
ORF3a40S40LtCatTa55B.1.177.440.002595
ORF3a40S40delTCA---55B.1.20.000044
ORF3a40S40LtCatTa55B.1.2410.004058
ORF3a40S40LtCatTa55B.1.3350.051546
ORF3a40S40LtCatTa55B.1.360.00073
ORF3a40S40delTCA---55B.1.438.10.000536
ORF3a40S40PTcaCca55B.1.5260.000118
ORF3a40S40ATcaGca55B.1.617.20.000019
ORF3a40S40LtCatTa55C.370.00058
ORF3a40S40PTcaCca55C.370.00058
ORF3a40S40LtCatTa44AY.1050.002572
ORF3a40S40LtCatTa44AY.1190.000141
ORF3a40S40delTCA---44AY.200.000155
ORF3a40S40PTcaCca44AY.200.000155
ORF3a40S40StcAtcT44AY.380.001997
ORF3a40S40LtCatTa44AY.39.10.000158
ORF3a40S40ATcaGca44AY.4.20.000087
ORF3a40S40delTCA---44AY.4.20.000087
ORF3a40S40delTCA---44AY.4.50.00043
ORF3a40S40LtCatTa44AY.46.50.000794
ORF3a40S40LtCatTa44AY.7.10.000451
ORF3a40S40LtCatTa44AY.750.000224
ORF3a40S40LtCatTa44AY.980.000316
ORF3a40S40LtCatTa44B.1.1.2160.003562
ORF3a40S40LtCatTa44B.1.1.330.001684
ORF3a40S40LtCatTa44B.1.1.3720.002755
ORF3a40S40LtCatTa44B.1.1.4560.222222
ORF3a40S40del1tcAtc-34B.1.1.70.000003
ORF3a40S40del1tCat-a14B.1.1.70.000001
ORF3a40S40LtCatTa44B.1.177.860.000734
ORF3a40S40LtCatTa44B.1.3060.022857
ORF3a40S40LtCatTa44B.1.3110.001098
ORF3a40S40LtCatTa44B.1.466.20.001565
ORF3a40S40LtCatTa44C.36.30.002269
ORF3a40S40delTCA---44P.1.90.019231
ORF3a40S40LtCatTa44Q.10.000505
ORF3a40S40delTCA---33AY.1200.000112
ORF3a40S40StcAtcG33AY.16.10.00141
ORF3a40S40LtCatTa33AY.16.10.00141
ORF3a40S40PTcaCca33AY.260.000085
ORF3a40S40LtCatTa33AY.340.000291
ORF3a40S40LtCatTa33AY.370.000948
ORF3a40S40PTcaCca33AY.4.2.10.000447
ORF3a40S40LtCatTa33AY.4.50.000322
ORF3a40S40StcAtcC33AY.400.002893
ORF3a40S40LtCatTa33AY.420.000121
ORF3a40S40delTCA---33AY.450.000365
ORF3a40S40StcAtcG33AY.470.000093
ORF3a40S40LtCatTa33AY.5.30.001012
ORF3a40S40PTcaCca33AY.610.000314
ORF3a40S40ATcaGca33AY.610.000314
ORF3a40S40PTcaCca33AY.70.000588
ORF3a40S40PTcaCca33AY.75.10.000541
ORF3a40S40LtCatTa33AY.850.001282
ORF3a40S40LtCatTa33AY.930.000819
ORF3a40S40LtCatTa33AY.960.006224
ORF3a40S40LtCatTa33AY.98.10.000145
ORF3a40S40LtCatTa33B.1.1.3480.002389
ORF3a40S40LtCatTa33B.1.1.4160.002715
ORF3a40S40delTCA---33B.1.160.240.013274
ORF3a40S40ATcaGca33B.1.1770.00004
ORF3a40S40StcAtcC33B.1.1770.00004
ORF3a40S40LtCatTa33B.1.177.200.004552
ORF3a40S40LtCatTa33B.1.3670.002377
ORF3a40S40LtCatTa33B.1.3750.002459
ORF3a40S40delTCA---33B.1.4270.000151
ORF3a40S40TTcaAca33B.1.4290.000071
ORF3a40S40StcAtcG33B.1.5260.000071
ORF3a40S40LtCatTa33B.1.5820.001472
ORF3a40S40LtCatTa33B.1.5950.000783
ORF3a40S40LtCatTa33B.1.6090.001438
ORF3a40S40TTcaAca33B.1.617.20.000011
ORF3a40S40LtCatTa33B.1.6230.001609
ORF3a40S40LtCatTa33B.1.6370.000219
ORF3a40S40LtCatTa33B.520.030303
ORF3a40S40LtCatTa33C.110.031915
ORF3a40S40StcAtcC23P.10.000032
ORF3a40S40StcAtcG13P.10.000016
ORF3a40S40LtCatTa33P.1.10.000953
ORF3a40S40delTCA---33U.30.011583
ORF3a40S40LtCatTa22A.2.20.003378
ORF3a40S40LtCatTa22A.230.021053
ORF3a40S40PTcaCca22A.60.010256
ORF3a40S40CtCAtGC22All0
ORF3a40S40LtCatTa22AY.1010.000981
ORF3a40S40StcAtcG12AY.1030.000006
ORF3a40S40StcAtcC12AY.1030.000006
ORF3a40S40LtCatTa22AY.1100.000225
ORF3a40S40LtCatTa22AY.116.10.000623
ORF3a40S40LtCatTa22AY.120.10.000642
ORF3a40S40LtCatTa22AY.130.000322
ORF3a40S40delTCA---22AY.130.000322
ORF3a40S40LtCatTa22AY.20.000712
ORF3a40S40StcAtcG22AY.200.000078
ORF3a40S40PTcaCca22AY.370.000632
ORF3a40S40StcAtcC22AY.39.10.000079
ORF3a40S40LtCatTa22AY.4.40.000818
ORF3a40S40TTcaAca22AY.410.000588
ORF3a40S40PTcaCca22AY.460.000208
ORF3a40S40StcAtcT22AY.460.000208
ORF3a40S40delTCA---22AY.46.20.001271
ORF3a40S40delTCA---22AY.50.000041
ORF3a40S40delTCA---22AY.590.001059
ORF3a40S40delTCA---22AY.60.000082
ORF3a40S40LtCatTa22AY.60.000082
ORF3a40S40LtCatTa22AY.640.00119
ORF3a40S40delTCA---22AY.670.000929
ORF3a40S40delTCA---22AY.750.000112
ORF3a40S40LtCatTa22AY.75.10.000361
ORF3a40S40LtCatTa22AY.800.002257
ORF3a40S40delTCA---22AY.810.003984
ORF3a40S40LtCatTa22AY.840.000875
ORF3a40S40PTcaCca22AY.850.000854
ORF3a40S40delTCA---22AY.9.20.000073
ORF3a40S40LtCatTa22AY.920.000575
ORF3a40S40delTCA---22AY.980.000158
ORF3a40S40StcAtcT12AY.980.000079
ORF3a40S40StcAtcC12AY.980.000079
ORF3a40S40TTcaAca22AY.99.20.000184
ORF3a40S40StcAtcG12B.10.000009
ORF3a40S40StcAtcT12B.10.000009
ORF3a40S40LtCatTa22B.1.1.1530.002191
ORF3a40S40LtCatTa22B.1.1.2310.006192
ORF3a40S40LtCatTa22B.1.1.2840.000215
ORF3a40S40LtCatTa22B.1.1.3060.000877
ORF3a40S40PTcaCca22B.1.1.3180.000604
ORF3a40S40LtCatTa22B.1.1.3180.000604
ORF3a40S40LtCatTa22B.1.1.4030.051282
ORF3a40S40LtCatTa22B.1.1.500.001358
ORF3a40S40delTCA---22B.1.1.5190.000079
ORF3a40S40LtCatTa22B.1.1.5210.010695
ORF3a40S40delTCA---22B.1.160.330.00885
ORF3a40S40PTcaCca22B.1.1770.000026
ORF3a40S40LtCatTa22B.1.177.620.002384
ORF3a40S40LtCatTa22B.1.177.750.002081
ORF3a40S40LtCatTa22B.1.2340.000264
ORF3a40S40PTcaCca22B.1.360.000292
ORF3a40S40PTcaCca22B.1.36.220.002415
ORF3a40S40StcAtcG12B.1.3960.000706
ORF3a40S40StcAtcT12B.1.3960.000706
ORF3a40S40StcAtcG22B.1.4090.001563
ORF3a40S40LtCatTa22B.1.4280.002041
ORF3a40S40LtCatTa22B.1.4690.00722
ORF3a40S40StcAtcC22B.1.4710.005464
ORF3a40S40LtCatTa22B.1.4800.004975
ORF3a40S40delTCA---22B.1.5250.000226
ORF3a40S40LtCatTa22B.1.5870.003795
ORF3a40S40PTcaCca22B.1.5960.000174
ORF3a40S40LtCatTa22B.1.5970.009259
ORF3a40S40LtCatTa22B.1.6190.001742
ORF3a40S40delTCA---22B.1.6210.000177
ORF3a40S40LtCatTa22B.1.6280.000705
ORF3a40S40LtCatTa22B.1.6390.043478
ORF3a40S40LtCatTa22B.550.0059
ORF3a40S40delTCA---22D.20.00015
ORF3a40S40LtCatTa22L.30.007092
ORF3a40S40ATcaGca22N.40.008511
ORF3a40S40PTcaCca22P.10.000032
ORF3a40S40LtCatTa22P.1.17.10.00175
ORF3a40S40LtCatTa22P.1.70.000639
ORF3a40S40LtCatTa22Q.30.00029
ORF3a40S40CtCAtGC11A0.000387
ORF3a40S40LtCatTa11A0.000387
ORF3a40S40XtCatGa11A0.000387
ORF3a40S40StcAtcC11A0.000387
ORF3a40S40LtCatTa11A.10.000282
ORF3a40S40StcAtcG11A.20.000662
ORF3a40S40delTCA---11A.2.30.004739
ORF3a40S40LtCatTa11A.2.5.20.001572
ORF3a40S40LtCatTa11A.270.001656
ORF3a40S40StcAtcC11AB.10.008197
ORF3a40S40LtCatTa11AE.80.000489
ORF3a40S40delTCA---11AH.30.003802
ORF3a40S40del2TCA--N11All0
ORF3a40S40KTCaAAa11All0
ORF3a40S40ITCaATa11All0
ORF3a40S40del1tcAtc-11AU.10.001266
ORF3a40S40TTcaAca11AW.10.003049
ORF3a40S40StcAtcG11AY.100.00053
ORF3a40S40delTCA---11AY.1020.000027
ORF3a40S40TTcaAca11AY.1030.000006
ORF3a40S40ATcaGca11AY.1030.000006
ORF3a40S40PTcaCca11AY.1040.001984
ORF3a40S40LtCatTa11AY.1070.000466
ORF3a40S40delTCA---11AY.1110.000183
ORF3a40S40delTCA---11AY.1130.000142
ORF3a40S40TTcaAca11AY.1140.000231
ORF3a40S40delTCA---11AY.1140.000231
ORF3a40S40LtCatTa11AY.1140.000231
ORF3a40S40LtCatTa11AY.1160.000287
ORF3a40S40delTCA---11AY.1170.000085
ORF3a40S40StcAtcC11AY.1180.000063
ORF3a40S40PTcaCca11AY.1180.000063
ORF3a40S40PTcaCca11AY.120.000316
ORF3a40S40PTcaCca11AY.1210.000135
ORF3a40S40ATcaGca11AY.140.000088
ORF3a40S40LtCatTa11AY.160.00038
ORF3a40S40LtCatTa11AY.210.001898
ORF3a40S40delTCA---11AY.230.00007
ORF3a40S40LtCatTa11AY.23.10.000417
ORF3a40S40LtCatTa11AY.240.000431
ORF3a40S40TTcaAca11AY.250.000006
ORF3a40S40ATcaGca11AY.260.000028
ORF3a40S40del2TCA--N11AY.260.000028
ORF3a40S40PTcaCca11AY.270.000065
ORF3a40S40delTCA---11AY.280.00189
ORF3a40S40LtCatTa11AY.280.00189
ORF3a40S40StcAtcC11AY.290.000016
ORF3a40S40delTCA---11AY.290.000016
ORF3a40S40delTCA---11AY.29.10.000221
ORF3a40S40delTCA---11AY.30.00001
ORF3a40S40PTcaCca11AY.30.00001
ORF3a40S40LtCatTa11AY.300.000396
ORF3a40S40delTCA---11AY.330.000067
ORF3a40S40LtCatTa11AY.34.10.00051
ORF3a40S40LtCatTa11AY.380.000499
ORF3a40S40TTcaAca11AY.390.000025
ORF3a40S40delTCA---11AY.39.10.00004
ORF3a40S40XtCatGa11AY.40.000002
ORF3a40S40ITCaATa11AY.40.000002
ORF3a40S40PTcaCca11AY.4.20.000022
ORF3a40S40ATcaGca11AY.4.2.10.000149
ORF3a40S40LtCatTa11AY.410.000294
ORF3a40S40XtCatAa11AY.420.00004
ORF3a40S40delTCA---11AY.420.00004
ORF3a40S40TTcaAca11AY.430.000004
ORF3a40S40KTCaAAa11AY.440.000006
ORF3a40S40PTcaCca11AY.450.000122
ORF3a40S40TTcaAca11AY.460.000104
ORF3a40S40TTcaAca11AY.46.50.000198
ORF3a40S40PTcaCca11AY.470.000031
ORF3a40S40PTcaCca11AY.5.30.000337
ORF3a40S40LtCatTa11AY.5.40.000277
ORF3a40S40LtCatTa11AY.570.000656
ORF3a40S40LtCatTa11AY.590.00053
ORF3a40S40TTcaAca11AY.60.000041
ORF3a40S40PTcaCca11AY.60.000041
ORF3a40S40PTcaCca11AY.600.000938
ORF3a40S40delTCA---11AY.600.000938
ORF3a40S40delTCA---11AY.610.000105
ORF3a40S40delTCA---11AY.650.000533
ORF3a40S40LtCatTa11AY.650.000533
ORF3a40S40PTcaCca11AY.690.000187
ORF3a40S40LtCatTa11AY.690.000187
ORF3a40S40delTCA---11AY.70.000196
ORF3a40S40LtCatTa11AY.710.000475
ORF3a40S40StcAtcC11AY.740.000116
ORF3a40S40PTcaCca11AY.740.000116
ORF3a40S40TTcaAca11AY.740.000116
ORF3a40S40delTCA---11AY.75.10.00018
ORF3a40S40ATcaGca11AY.75.10.00018
ORF3a40S40LtCatTa11AY.80.000606
ORF3a40S40StcAtcT11AY.840.000437
ORF3a40S40PTcaCca11AY.9.20.000037
ORF3a40S40LtCatTa11AY.9.2.10.001976
ORF3a40S40delTCA---11AY.900.000684
ORF3a40S40ATcaGca11AY.910.00073
ORF3a40S40delTCA---11AY.910.00073
ORF3a40S40delTCA---11AY.930.000273
ORF3a40S40StcAtcG11AY.940.000443
ORF3a40S40delTCA---11AY.98.10.000048
ORF3a40S40PTcaCca11AY.98.10.000048
ORF3a40S40delTCA---11AY.990.001049
ORF3a40S40delTCA---11AY.99.20.000092
ORF3a40S40LtCatTa11AZ.10.000867
ORF3a40S40delTCA---11B0.000128
ORF3a40S40ATcaGca11B.10.000009
ORF3a40S40XtCatAa11B.10.000009
ORF3a40S40del1tCat-a11B.10.000009
ORF3a40S40TTcaAca11B.10.000009
ORF3a40S40StcAtcT11B.1.10.000018
ORF3a40S40StcAtcG11B.1.1.10.000327
ORF3a40S40LtCatTa11B.1.1.1280.007092
ORF3a40S40LtCatTa11B.1.1.1360.021277
ORF3a40S40ATcAGcC11B.1.1.1390.022727
ORF3a40S40LtCatTa11B.1.1.1410.002012
ORF3a40S40PTcaCca11B.1.1.1570.000913
ORF3a40S40LtCatTa11B.1.1.1760.000439
ORF3a40S40LtCatTa11B.1.1.1920.002309
ORF3a40S40LtCatTa11B.1.1.2070.001182
ORF3a40S40LtCatTa11B.1.1.2140.000055
ORF3a40S40LtCatTa11B.1.1.2200.001859
ORF3a40S40delTCA---11B.1.1.2220.000204
ORF3a40S40LtCatTa11B.1.1.2220.000204
ORF3a40S40delTCA---11B.1.1.2250.007194
ORF3a40S40LtCatTa11B.1.1.2430.004082
ORF3a40S40LtCatTa11B.1.1.250.000569
ORF3a40S40LtCatTa11B.1.1.2550.00303
ORF3a40S40LtCatTa11B.1.1.2770.000759
ORF3a40S40delTCA---11B.1.1.280.000311
ORF3a40S40LtCatTa11B.1.1.2800.003086
ORF3a40S40StcAtcG11B.1.1.2840.000107
ORF3a40S40delTCA---11B.1.1.2840.000107
ORF3a40S40LtCatTa11B.1.1.2970.002237
ORF3a40S40LtCatTa11B.1.1.3010.001179
ORF3a40S40delTCA---11B.1.1.3110.000358
ORF3a40S40LtCatTa11B.1.1.3170.000412
ORF3a40S40PTcaCca11B.1.1.3510.002793
ORF3a40S40LtCatTa11B.1.1.3690.000446
ORF3a40S40ATcaGca11B.1.1.370.000193
ORF3a40S40StcAtcC11B.1.1.3720.000689
ORF3a40S40LtCatTa11B.1.1.390.00051
ORF3a40S40delTCA---11B.1.1.390.00051
ORF3a40S40delTCA---11B.1.1.4090.002833
ORF3a40S40LtCatTa11B.1.1.4320.001266
ORF3a40S40LtCatTa11B.1.1.4350.034483
ORF3a40S40LtCatTa11B.1.1.4480.002033
ORF3a40S40LtCatTa11B.1.1.540.003021
ORF3a40S40CtCAtGC11B.1.1.70.000001
ORF3a40S40LtCatTa11B.1.1.700.000341
ORF3a40S40StcAtcC11B.1.1.700.000341
ORF3a40S40LtCatTa11B.1.1110.001175
ORF3a40S40LtCatTa11B.1.1120.005181
ORF3a40S40LtCatTa11B.1.1470.000756
ORF3a40S40LtCatTa11B.1.1530.018868
ORF3a40S40LtCatTa11B.1.1580.02381
ORF3a40S40delTCA---11B.1.1600.000031
ORF3a40S40LtCatTa11B.1.160.100.008065
ORF3a40S40LtCatTa11B.1.160.280.002924
ORF3a40S40LtCatTa11B.1.160.80.001289
ORF3a40S40LtCatTa11B.1.177.100.000878
ORF3a40S40LtCatTa11B.1.177.120.000152
ORF3a40S40LtCatTa11B.1.177.160.000664
ORF3a40S40StcAtcC11B.1.177.350.000691
ORF3a40S40LtCatTa11B.1.177.40.000211
ORF3a40S40LtCatTa11B.1.177.430.001477
ORF3a40S40PTcaCca11B.1.177.440.000519
ORF3a40S40LtCatTa11B.1.177.540.000606
ORF3a40S40delTCA---11B.1.177.60.000977
ORF3a40S40LtCatTa11B.1.177.60.000977
ORF3a40S40LtCatTa11B.1.177.600.000218
ORF3a40S40LtCatTa11B.1.177.730.000566
ORF3a40S40LtCatTa11B.1.177.780.009709
ORF3a40S40LtCatTa11B.1.177.870.000728
ORF3a40S40StcAtcC11B.1.20.000009
ORF3a40S40LtCatTa11B.1.2060.000816
ORF3a40S40TTcaAca11B.1.2100.002132
ORF3a40S40delTCA---11B.1.2210.000071
ORF3a40S40PTcaCca11B.1.2340.000132
ORF3a40S40StcAtcG11B.1.2360.002053
ORF3a40S40LtCatTa11B.1.2390.001221
ORF3a40S40delTCA---11B.1.2410.000812
ORF3a40S40TTcaAca11B.1.2430.00007
ORF3a40S40delTCA---11B.1.2430.00007
ORF3a40S40LtCatTa11B.1.2470.014925
ORF3a40S40PTcaCca11B.1.2580.000067
ORF3a40S40LtCatTa11B.1.2650.001271
ORF3a40S40PTcaCca11B.1.2790.000514
ORF3a40S40LtCatTa11B.1.2840.013158
ORF3a40S40LtCatTa11B.1.3010.005917
ORF3a40S40XtCatGa11B.1.3110.000275
ORF3a40S40LtCatTa11B.1.3190.003049
ORF3a40S40LtCatTa11B.1.3400.004292
ORF3a40S40ATcaGca11B.1.3510.00003
ORF3a40S40PTcaCca11B.1.3510.00003
ORF3a40S40LtCatTa11B.1.3560.001727
ORF3a40S40LtCatTa11B.1.36.160.001425
ORF3a40S40LtCatTa11B.1.36.170.000494
ORF3a40S40LtCatTa11B.1.36.350.002604
ORF3a40S40LtCatTa11B.1.36.80.001
ORF3a40S40StcAtcC11B.1.36.80.001
ORF3a40S40PTcaCca11B.1.3670.000792
ORF3a40S40PTcaCca11B.1.3710.001122
ORF3a40S40LtCatTa11B.1.3900.010638
ORF3a40S40LtCatTa11B.1.3960.000706
ORF3a40S40PTcaCca11B.1.416.10.001563
ORF3a40S40StcAtcG11B.1.4270.00005
ORF3a40S40PTcaCca11B.1.4290.000024
ORF3a40S40XtCatGa11B.1.4290.000024
ORF3a40S40LtCatTa11B.1.4370.020833
ORF3a40S40LtCatTa11B.1.4450.011765
ORF3a40S40StcAtcC11B.1.4560.003268
ORF3a40S40LtCatTa11B.1.4620.007246
ORF3a40S40LtCatTa11B.1.4970.000315
ORF3a40S40LtCatTa11B.1.5090.000866
ORF3a40S40LtCatTa11B.1.5240.001406
ORF3a40S40TTcaAca11B.1.5260.000024
ORF3a40S40LtCatTa11B.1.5300.007143
ORF3a40S40LtCatTa11B.1.5380.008065
ORF3a40S40LtCatTa11B.1.5510.00129
ORF3a40S40LtCatTa11B.1.5610.000397
ORF3a40S40StcAtcT11B.1.5650.00081
ORF3a40S40LtCatTa11B.1.5650.00081
ORF3a40S40LtCatTa11B.1.5750.000303
ORF3a40S40PTcaCca11B.1.5750.000303
ORF3a40S40LtCatTa11B.1.5800.004065
ORF3a40S40LtCatTa11B.1.596.10.009346
ORF3a40S40LtCatTa11B.1.6030.010638
ORF3a40S40StcAtcT11B.1.6090.000479
ORF3a40S40PTcaCca11B.1.617.10.000129
ORF3a40S40XtCatAa11B.1.617.20.000004
ORF3a40S40PTcaCca11B.1.6200.000946
ORF3a40S40LtCatTa11B.1.6250.002353
ORF3a40S40LtCAtTG11B.1.6300.005236
ORF3a40S40delTCA---11B.1.6370.000073
ORF3a40S40PTcaCca11B.1.6370.000073
ORF3a40S40delTCA---11B.1.6380.052632
ORF3a40S40LtCatTa11B.1.780.008547
ORF3a40S40PTcaCca11B.280.003279
ORF3a40S40PTcaCca11B.3.10.001658
ORF3a40S40LtCatTa11B.3.10.001658
ORF3a40S40LtCatTa11B.400.000364
ORF3a40S40LtCatTa11B.530.011765
ORF3a40S40TTcaAca11B.60.00091
ORF3a40S40LtCatTa11C.10.002392
ORF3a40S40LtCatTa11C.1.20.004255
ORF3a40S40LtCatTa11C.140.004329
ORF3a40S40LtCatTa11C.360.000911
ORF3a40S40delTCA---11C.370.000116
ORF3a40S40LtCatTa11N.40.004255
ORF3a40S40delTCA---11P.1.120.000484
ORF3a40S40delTCA---11P.1.140.000048
ORF3a40S40delTCA---11P.1.150.000232
ORF3a40S40StcAtcC11P.1.160.000374
ORF3a40S40LtCatTa11P.1.160.000374
ORF3a40S40PTcaCca11P.1.160.000374
ORF3a40S40PTcaCca11P.1.20.001156
ORF3a40S40LtCatTa11P.1.20.001156
ORF3a40S40LtCatTa11P.1.40.000977
ORF3a40S40PTcaCca11P.20.000187
ORF3a40S40LtCatTa11Q.40.000455
ORF3a40S40PTcaCca11R.10.00009
ORF3a40S40LtCatTa11W.10.008696
ORF3a40S40LtCatTa11W.40.001351