CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 39 | A39A | syn | gcC | gcT | 4121 | 3747 | 0.909245 | 25507-25509 | |
ORF3a | 39 | A39A | syn | gcC | gcA | 4121 | 359 | 0.0871148 | 25507-25509 | |
ORF3a | 39 | A39A | syn | gcC | gcG | 4121 | 15 | 0.00363989 | 25507-25509 | |
ORF3a | 39 | A39T | nonsyn | Gcc | Acc | 1563 | 1563 | 1 | 25507-25509 | |
ORF3a | 39 | A39del | del | GCC | --- | 766 | 766 | 1 | 25507-25509 | |
ORF3a | 39 | A39S | nonsyn | Gcc | Tcc | 430 | 428 | 0.995349 | 25507-25509 | |
ORF3a | 39 | A39S | nonsyn | GcC | TcT | 430 | 2 | 0.00465116 | 25507-25509 | |
ORF3a | 39 | A39V | nonsyn | gCc | gTc | 160 | 157 | 0.98125 | 25507-25509 | |
ORF3a | 39 | A39V | nonsyn | gCC | gTT | 160 | 3 | 0.01875 | 25507-25509 | |
ORF3a | 39 | A39D | nonsyn | gCc | gAc | 97 | 97 | 1 | 25507-25509 | |
ORF3a | 39 | A39G | nonsyn | gCC | gGT | 8 | 5 | 0.625 | 25507-25509 | |
ORF3a | 39 | A39G | nonsyn | gCc | gGc | 8 | 2 | 0.25 | 25507-25509 | |
ORF3a | 39 | A39G | nonsyn | gCC | gGA | 8 | 1 | 0.125 | 25507-25509 | |
ORF3a | 39 | A39P | nonsyn | Gcc | Ccc | 5 | 5 | 1 | 25507-25509 | |
ORF3a | 39 | A39F | nonsyn | GCc | TTc | 2 | 2 | 1 | 25507-25509 | |
ORF3a | 39 | A39del1 | del | gCc | g-c | 2 | 2 | 1 | 25507-25509 | |
ORF3a | 39 | A39del2 | del | gCC | g-- | 2 | 1 | 0.5 | 25507-25509 | |
ORF3a | 39 | A39del2 | del | GCC | --N | 2 | 1 | 0.5 | 25507-25509 | |
ORF3a | 39 | A39E | nonsyn | gCC | gAA | 1 | 1 | 1 | 25507-25509 | |
ORF3a | 39 | A39I | nonsyn | GCc | ATc | 1 | 1 | 1 | 25507-25509 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 39 | A39A | gcC | gcT | 3747 | 4121 | All | 0.000717 |
ORF3a | 39 | A39A | gcC | gcA | 359 | 4121 | All | 0.000069 |
ORF3a | 39 | A39A | gcC | gcG | 15 | 4121 | All | 0.000003 |
ORF3a | 39 | A39T | Gcc | Acc | 1563 | 1563 | All | 0.000299 |
ORF3a | 39 | A39A | gcC | gcT | 1032 | 1033 | B.1.351 | 0.030678 |
ORF3a | 39 | A39A | gcC | gcA | 1 | 1033 | B.1.351 | 0.00003 |
ORF3a | 39 | A39A | gcC | gcT | 954 | 976 | B.1.1.7 | 0.000854 |
ORF3a | 39 | A39A | gcC | gcA | 22 | 976 | B.1.1.7 | 0.00002 |
ORF3a | 39 | A39del | GCC | --- | 766 | 766 | All | 0.000147 |
ORF3a | 39 | A39T | Gcc | Acc | 696 | 696 | B.1.637 | 0.050859 |
ORF3a | 39 | A39A | gcC | gcT | 678 | 679 | AY.3 | 0.006744 |
ORF3a | 39 | A39A | gcC | gcA | 1 | 679 | AY.3 | 0.00001 |
ORF3a | 39 | A39S | Gcc | Tcc | 428 | 430 | All | 0.000082 |
ORF3a | 39 | A39S | GcC | TcT | 2 | 430 | All | 0 |
ORF3a | 39 | A39A | gcC | gcT | 214 | 228 | AY.4 | 0.000333 |
ORF3a | 39 | A39A | gcC | gcA | 12 | 228 | AY.4 | 0.000019 |
ORF3a | 39 | A39A | gcC | gcG | 2 | 228 | AY.4 | 0.000003 |
ORF3a | 39 | A39del | GCC | --- | 193 | 193 | AY.26 | 0.005464 |
ORF3a | 39 | A39A | gcC | gcT | 139 | 164 | B.1.617.2 | 0.000523 |
ORF3a | 39 | A39A | gcC | gcA | 23 | 164 | B.1.617.2 | 0.000087 |
ORF3a | 39 | A39A | gcC | gcG | 2 | 164 | B.1.617.2 | 0.000008 |
ORF3a | 39 | A39V | gCc | gTc | 157 | 160 | All | 0.00003 |
ORF3a | 39 | A39V | gCC | gTT | 3 | 160 | All | 0.000001 |
ORF3a | 39 | A39del | GCC | --- | 153 | 153 | B.1.630 | 0.801047 |
ORF3a | 39 | A39T | Gcc | Acc | 131 | 131 | B.1.243 | 0.009116 |
ORF3a | 39 | A39A | gcC | gcT | 53 | 104 | AY.44 | 0.000323 |
ORF3a | 39 | A39A | gcC | gcA | 51 | 104 | AY.44 | 0.00031 |
ORF3a | 39 | A39D | gCc | gAc | 97 | 97 | All | 0.000019 |
ORF3a | 39 | A39T | Gcc | Acc | 93 | 93 | B.1.617.2 | 0.00035 |
ORF3a | 39 | A39T | Gcc | Acc | 92 | 92 | AY.4 | 0.000143 |
ORF3a | 39 | A39S | Gcc | Tcc | 71 | 71 | B.1.1.7 | 0.000064 |
ORF3a | 39 | A39A | gcC | gcT | 60 | 66 | C.16 | 0.063627 |
ORF3a | 39 | A39A | gcC | gcA | 6 | 66 | C.16 | 0.006363 |
ORF3a | 39 | A39S | Gcc | Tcc | 63 | 63 | AY.25 | 0.000379 |
ORF3a | 39 | A39S | Gcc | Tcc | 61 | 61 | B.1.234 | 0.008049 |
ORF3a | 39 | A39A | gcC | gcT | 44 | 55 | AY.43 | 0.000195 |
ORF3a | 39 | A39A | gcC | gcA | 10 | 55 | AY.43 | 0.000044 |
ORF3a | 39 | A39A | gcC | gcG | 1 | 55 | AY.43 | 0.000004 |
ORF3a | 39 | A39T | Gcc | Acc | 55 | 55 | B.1.1.7 | 0.000049 |
ORF3a | 39 | A39del | GCC | --- | 54 | 54 | B.1.177.82 | 0.025776 |
ORF3a | 39 | A39T | Gcc | Acc | 53 | 53 | B.1 | 0.000485 |
ORF3a | 39 | A39del | GCC | --- | 49 | 49 | B.1.1.7 | 0.000044 |
ORF3a | 39 | A39del | GCC | --- | 44 | 44 | AY.43 | 0.000195 |
ORF3a | 39 | A39A | gcC | gcA | 32 | 44 | B.1.1.28 | 0.00996 |
ORF3a | 39 | A39A | gcC | gcT | 12 | 44 | B.1.1.28 | 0.003735 |
ORF3a | 39 | A39A | gcC | gcA | 36 | 43 | AY.100 | 0.001656 |
ORF3a | 39 | A39A | gcC | gcT | 7 | 43 | AY.100 | 0.000322 |
ORF3a | 39 | A39S | Gcc | Tcc | 42 | 42 | B.1.2 | 0.00037 |
ORF3a | 39 | A39A | gcC | gcT | 24 | 42 | B.1.2 | 0.000211 |
ORF3a | 39 | A39A | gcC | gcA | 17 | 42 | B.1.2 | 0.00015 |
ORF3a | 39 | A39A | gcC | gcG | 1 | 42 | B.1.2 | 0.000009 |
ORF3a | 39 | A39A | gcC | gcT | 34 | 40 | AY.25 | 0.000205 |
ORF3a | 39 | A39A | gcC | gcA | 6 | 40 | AY.25 | 0.000036 |
ORF3a | 39 | A39T | Gcc | Acc | 38 | 38 | R.1 | 0.00342 |
ORF3a | 39 | A39del | GCC | --- | 36 | 36 | B.1.177 | 0.000474 |
ORF3a | 39 | A39A | gcC | gcT | 27 | 35 | B.1 | 0.000247 |
ORF3a | 39 | A39A | gcC | gcA | 6 | 35 | B.1 | 0.000055 |
ORF3a | 39 | A39A | gcC | gcG | 2 | 35 | B.1 | 0.000018 |
ORF3a | 39 | A39V | gCc | gTc | 34 | 34 | B.1 | 0.000311 |
ORF3a | 39 | A39T | Gcc | Acc | 33 | 33 | AY.25 | 0.000198 |
ORF3a | 39 | A39T | Gcc | Acc | 32 | 32 | B.1.177.21 | 0.002447 |
ORF3a | 39 | A39del | GCC | --- | 30 | 30 | AY.4 | 0.000047 |
ORF3a | 39 | A39A | gcC | gcA | 16 | 28 | AY.103 | 0.000099 |
ORF3a | 39 | A39A | gcC | gcT | 12 | 28 | AY.103 | 0.000075 |
ORF3a | 39 | A39A | gcC | gcT | 24 | 28 | B.1.1 | 0.000435 |
ORF3a | 39 | A39A | gcC | gcA | 4 | 28 | B.1.1 | 0.000073 |
ORF3a | 39 | A39A | gcC | gcT | 19 | 28 | P.1 | 0.000299 |
ORF3a | 39 | A39A | gcC | gcA | 9 | 28 | P.1 | 0.000142 |
ORF3a | 39 | A39V | gCc | gTc | 27 | 27 | Q.1 | 0.003411 |
ORF3a | 39 | A39S | Gcc | Tcc | 25 | 25 | B.1.177 | 0.000329 |
ORF3a | 39 | A39T | Gcc | Acc | 24 | 24 | B.1.1.519 | 0.000953 |
ORF3a | 39 | A39T | Gcc | Acc | 23 | 23 | AU.3 | 0.048523 |
ORF3a | 39 | A39del | GCC | --- | 23 | 23 | B.1.1 | 0.000417 |
ORF3a | 39 | A39T | Gcc | Acc | 23 | 23 | B.1.2 | 0.000203 |
ORF3a | 39 | A39A | gcC | gcT | 23 | 23 | B.1.400 | 0.009867 |
ORF3a | 39 | A39D | gCc | gAc | 22 | 22 | AY.25 | 0.000132 |
ORF3a | 39 | A39A | gcC | gcT | 21 | 22 | B.1.429 | 0.000494 |
ORF3a | 39 | A39A | gcC | gcA | 1 | 22 | B.1.429 | 0.000024 |
ORF3a | 39 | A39S | Gcc | Tcc | 21 | 21 | AY.117 | 0.001775 |
ORF3a | 39 | A39del | GCC | --- | 20 | 20 | AY.25 | 0.00012 |
ORF3a | 39 | A39S | Gcc | Tcc | 20 | 20 | B.1.243 | 0.001392 |
ORF3a | 39 | A39S | Gcc | Tcc | 20 | 20 | B.1.617.2 | 0.000075 |
ORF3a | 39 | A39A | gcC | gcT | 19 | 19 | AY.42 | 0.000764 |
ORF3a | 39 | A39A | gcC | gcT | 19 | 19 | AY.98.1 | 0.00092 |
ORF3a | 39 | A39T | Gcc | Acc | 19 | 19 | B.1.221.3 | 0.015833 |
ORF3a | 39 | A39V | gCc | gTc | 18 | 18 | AY.20 | 0.0007 |
ORF3a | 39 | A39T | Gcc | Acc | 18 | 18 | P.1 | 0.000284 |
ORF3a | 39 | A39T | Gcc | Acc | 17 | 17 | B.1.1.391 | 0.145299 |
ORF3a | 39 | A39A | gcC | gcT | 17 | 17 | P.1.14 | 0.000813 |
ORF3a | 39 | A39A | gcC | gcT | 17 | 17 | Q.8 | 0.002803 |
ORF3a | 39 | A39T | Gcc | Acc | 15 | 15 | AY.44 | 0.000091 |
ORF3a | 39 | A39A | gcC | gcT | 15 | 15 | AY.95 | 0.011416 |
ORF3a | 39 | A39A | gcC | gcT | 15 | 15 | B.1.258 | 0.000998 |
ORF3a | 39 | A39T | Gcc | Acc | 14 | 14 | B.1.258 | 0.000932 |
ORF3a | 39 | A39A | gcC | gcT | 13 | 13 | A.2.5 | 0.006487 |
ORF3a | 39 | A39A | gcC | gcT | 12 | 13 | AY.26 | 0.00034 |
ORF3a | 39 | A39A | gcC | gcG | 1 | 13 | AY.26 | 0.000028 |
ORF3a | 39 | A39T | Gcc | Acc | 13 | 13 | B.1.1 | 0.000236 |
ORF3a | 39 | A39A | gcC | gcA | 7 | 12 | AY.119 | 0.000247 |
ORF3a | 39 | A39A | gcC | gcT | 4 | 12 | AY.119 | 0.000141 |
ORF3a | 39 | A39A | gcC | gcG | 1 | 12 | AY.119 | 0.000035 |
ORF3a | 39 | A39A | gcC | gcA | 6 | 12 | AY.47 | 0.000187 |
ORF3a | 39 | A39A | gcC | gcT | 6 | 12 | AY.47 | 0.000187 |
ORF3a | 39 | A39S | Gcc | Tcc | 12 | 12 | B.1 | 0.00011 |
ORF3a | 39 | A39T | Gcc | Acc | 12 | 12 | B.1.126 | 0.015306 |
ORF3a | 39 | A39del | GCC | --- | 12 | 12 | B.1.617.2 | 0.000045 |
ORF3a | 39 | A39A | gcC | gcT | 10 | 11 | AY.102 | 0.000265 |
ORF3a | 39 | A39A | gcC | gcA | 1 | 11 | AY.102 | 0.000027 |
ORF3a | 39 | A39T | Gcc | Acc | 11 | 11 | AY.39 | 0.000272 |
ORF3a | 39 | A39D | gCc | gAc | 11 | 11 | B.1.1.7 | 0.00001 |
ORF3a | 39 | A39A | gcC | gcT | 11 | 11 | C.37 | 0.001277 |
ORF3a | 39 | A39V | gCc | gTc | 10 | 10 | B.1.1.7 | 0.000009 |
ORF3a | 39 | A39T | Gcc | Acc | 10 | 10 | B.1.177 | 0.000132 |
ORF3a | 39 | A39A | gcC | gcA | 10 | 10 | B.1.177.79 | 0.023419 |
ORF3a | 39 | A39A | gcC | gcT | 8 | 9 | AY.46 | 0.000833 |
ORF3a | 39 | A39A | gcC | gcA | 1 | 9 | AY.46 | 0.000104 |
ORF3a | 39 | A39A | gcC | gcA | 8 | 9 | AY.9 | 0.000541 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 9 | AY.9 | 0.000068 |
ORF3a | 39 | A39V | gCc | gTc | 9 | 9 | B.1.177 | 0.000119 |
ORF3a | 39 | A39del | GCC | --- | 9 | 9 | B.1.258 | 0.000599 |
ORF3a | 39 | A39T | Gcc | Acc | 9 | 9 | B.1.526 | 0.000212 |
ORF3a | 39 | A39A | gcC | gcT | 9 | 9 | P.1.7 | 0.002874 |
ORF3a | 39 | A39A | gcC | gcA | 9 | 9 | R.1 | 0.00081 |
ORF3a | 39 | A39G | gCC | gGT | 5 | 8 | All | 0.000001 |
ORF3a | 39 | A39G | gCc | gGc | 2 | 8 | All | 0 |
ORF3a | 39 | A39G | gCC | gGA | 1 | 8 | All | 0 |
ORF3a | 39 | A39D | gCc | gAc | 8 | 8 | AY.103 | 0.00005 |
ORF3a | 39 | A39del | GCC | --- | 8 | 8 | AY.103 | 0.00005 |
ORF3a | 39 | A39A | gcC | gcT | 7 | 8 | AY.117 | 0.000592 |
ORF3a | 39 | A39A | gcC | gcA | 1 | 8 | AY.117 | 0.000085 |
ORF3a | 39 | A39S | Gcc | Tcc | 8 | 8 | AY.3 | 0.00008 |
ORF3a | 39 | A39A | gcC | gcT | 8 | 8 | AY.54 | 0.000763 |
ORF3a | 39 | A39T | Gcc | Acc | 7 | 7 | AY.3 | 0.00007 |
ORF3a | 39 | A39del | GCC | --- | 7 | 7 | AY.39 | 0.000173 |
ORF3a | 39 | A39A | gcC | gcA | 7 | 7 | AY.4.3 | 0.005892 |
ORF3a | 39 | A39S | Gcc | Tcc | 7 | 7 | AY.44 | 0.000043 |
ORF3a | 39 | A39A | gcC | gcT | 7 | 7 | B.1.580 | 0.028455 |
ORF3a | 39 | A39A | gcC | gcT | 7 | 7 | B.1.596 | 0.00061 |
ORF3a | 39 | A39A | gcC | gcA | 6 | 6 | AY.29 | 0.000095 |
ORF3a | 39 | A39A | gcC | gcT | 5 | 6 | AY.39 | 0.000124 |
ORF3a | 39 | A39A | gcC | gcA | 1 | 6 | AY.39 | 0.000025 |
ORF3a | 39 | A39S | Gcc | Tcc | 6 | 6 | AY.4 | 0.000009 |
ORF3a | 39 | A39V | gCc | gTc | 6 | 6 | AY.4 | 0.000009 |
ORF3a | 39 | A39D | gCc | gAc | 6 | 6 | AY.4 | 0.000009 |
ORF3a | 39 | A39V | gCc | gTc | 6 | 6 | AY.4.5 | 0.000645 |
ORF3a | 39 | A39T | Gcc | Acc | 6 | 6 | AY.43 | 0.000027 |
ORF3a | 39 | A39del | GCC | --- | 6 | 6 | AY.44 | 0.000037 |
ORF3a | 39 | A39V | gCc | gTc | 6 | 6 | B.1.2 | 0.000053 |
ORF3a | 39 | A39S | Gcc | Tcc | 6 | 6 | B.1.258 | 0.000399 |
ORF3a | 39 | A39A | gcC | gcT | 6 | 6 | B.1.524 | 0.008439 |
ORF3a | 39 | A39A | gcC | gcA | 5 | 6 | B.1.526 | 0.000118 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 6 | B.1.526 | 0.000024 |
ORF3a | 39 | A39del | GCC | --- | 6 | 6 | P.1 | 0.000095 |
ORF3a | 39 | A39P | Gcc | Ccc | 5 | 5 | All | 0.000001 |
ORF3a | 39 | A39T | Gcc | Acc | 5 | 5 | AY.102 | 0.000133 |
ORF3a | 39 | A39A | gcC | gcT | 5 | 5 | AY.120 | 0.000186 |
ORF3a | 39 | A39A | gcC | gcT | 4 | 5 | AY.27 | 0.000259 |
ORF3a | 39 | A39A | gcC | gcA | 1 | 5 | AY.27 | 0.000065 |
ORF3a | 39 | A39G | gCC | gGT | 5 | 5 | AY.3 | 0.00005 |
ORF3a | 39 | A39A | gcC | gcT | 3 | 5 | AY.4.2 | 0.000065 |
ORF3a | 39 | A39A | gcC | gcA | 2 | 5 | AY.4.2 | 0.000043 |
ORF3a | 39 | A39V | gCc | gTc | 5 | 5 | AY.44 | 0.00003 |
ORF3a | 39 | A39D | gCc | gAc | 5 | 5 | AY.44 | 0.00003 |
ORF3a | 39 | A39A | gcC | gcT | 5 | 5 | AY.45 | 0.000608 |
ORF3a | 39 | A39T | Gcc | Acc | 5 | 5 | AY.5 | 0.000103 |
ORF3a | 39 | A39T | Gcc | Acc | 5 | 5 | AY.9.1 | 0.000419 |
ORF3a | 39 | A39del | GCC | --- | 5 | 5 | B.1.2 | 0.000044 |
ORF3a | 39 | A39T | Gcc | Acc | 5 | 5 | B.1.258.17 | 0.00052 |
ORF3a | 39 | A39del | GCC | --- | 5 | 5 | B.1.438.1 | 0.000536 |
ORF3a | 39 | A39D | gCc | gAc | 5 | 5 | B.1.617.2 | 0.000019 |
ORF3a | 39 | A39A | gcC | gcT | 5 | 5 | D.2 | 0.000375 |
ORF3a | 39 | A39T | Gcc | Acc | 4 | 4 | AY.119 | 0.000141 |
ORF3a | 39 | A39A | gcC | gcT | 2 | 4 | AY.20 | 0.000078 |
ORF3a | 39 | A39A | gcC | gcA | 2 | 4 | AY.20 | 0.000078 |
ORF3a | 39 | A39A | gcC | gcT | 4 | 4 | AY.23 | 0.000279 |
ORF3a | 39 | A39D | gCc | gAc | 4 | 4 | AY.26 | 0.000113 |
ORF3a | 39 | A39del | GCC | --- | 4 | 4 | AY.4.2 | 0.000087 |
ORF3a | 39 | A39del | GCC | --- | 4 | 4 | AY.4.5 | 0.00043 |
ORF3a | 39 | A39S | Gcc | Tcc | 4 | 4 | AY.43 | 0.000018 |
ORF3a | 39 | A39S | Gcc | Tcc | 4 | 4 | AY.5.4 | 0.001107 |
ORF3a | 39 | A39A | gcC | gcT | 4 | 4 | AY.62 | 0.001743 |
ORF3a | 39 | A39del | GCC | --- | 4 | 4 | B.1 | 0.000037 |
ORF3a | 39 | A39D | gCc | gAc | 4 | 4 | B.1 | 0.000037 |
ORF3a | 39 | A39A | gcC | gcT | 3 | 4 | B.1.160 | 0.000094 |
ORF3a | 39 | A39A | gcC | gcA | 1 | 4 | B.1.160 | 0.000031 |
ORF3a | 39 | A39A | gcC | gcT | 3 | 4 | B.1.177 | 0.00004 |
ORF3a | 39 | A39A | gcC | gcA | 1 | 4 | B.1.177 | 0.000013 |
ORF3a | 39 | A39S | Gcc | Tcc | 4 | 4 | B.1.351 | 0.000119 |
ORF3a | 39 | A39A | gcC | gcT | 4 | 4 | B.1.575.1 | 0.009756 |
ORF3a | 39 | A39T | Gcc | Acc | 4 | 4 | B.1.617.3 | 0.01194 |
ORF3a | 39 | A39del | GCC | --- | 4 | 4 | P.1.9 | 0.019231 |
ORF3a | 39 | A39T | Gcc | Acc | 3 | 3 | AY.1 | 0.001187 |
ORF3a | 39 | A39S | Gcc | Tcc | 3 | 3 | AY.102 | 0.00008 |
ORF3a | 39 | A39A | gcC | gcT | 3 | 3 | AY.105 | 0.001929 |
ORF3a | 39 | A39T | Gcc | Acc | 3 | 3 | AY.106 | 0.001005 |
ORF3a | 39 | A39del | GCC | --- | 3 | 3 | AY.120 | 0.000112 |
ORF3a | 39 | A39T | Gcc | Acc | 3 | 3 | AY.13 | 0.000483 |
ORF3a | 39 | A39T | Gcc | Acc | 3 | 3 | AY.14 | 0.000264 |
ORF3a | 39 | A39A | gcC | gcA | 2 | 3 | AY.24 | 0.000862 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 3 | AY.24 | 0.000431 |
ORF3a | 39 | A39T | Gcc | Acc | 3 | 3 | AY.29 | 0.000047 |
ORF3a | 39 | A39A | gcC | gcT | 3 | 3 | AY.3.1 | 0.000256 |
ORF3a | 39 | A39V | gCc | gTc | 3 | 3 | AY.39.1 | 0.000119 |
ORF3a | 39 | A39D | gCc | gAc | 3 | 3 | AY.4.2 | 0.000065 |
ORF3a | 39 | A39D | gCc | gAc | 3 | 3 | AY.43 | 0.000013 |
ORF3a | 39 | A39del | GCC | --- | 3 | 3 | AY.45 | 0.000365 |
ORF3a | 39 | A39S | Gcc | Tcc | 3 | 3 | AY.47 | 0.000093 |
ORF3a | 39 | A39D | gCc | gAc | 3 | 3 | AY.5 | 0.000062 |
ORF3a | 39 | A39S | Gcc | Tcc | 3 | 3 | AY.84 | 0.001312 |
ORF3a | 39 | A39D | gCc | gAc | 3 | 3 | AY.9 | 0.000203 |
ORF3a | 39 | A39A | gcC | gcA | 3 | 3 | AY.9.1 | 0.000251 |
ORF3a | 39 | A39V | gCc | gTc | 3 | 3 | AY.9.2 | 0.00011 |
ORF3a | 39 | A39V | gCc | gTc | 3 | 3 | AY.98.1 | 0.000145 |
ORF3a | 39 | A39A | gcC | gcT | 3 | 3 | B.1.1.222 | 0.000612 |
ORF3a | 39 | A39A | gcC | gcT | 3 | 3 | B.1.1.25 | 0.001706 |
ORF3a | 39 | A39T | Gcc | Acc | 3 | 3 | B.1.1.284 | 0.000322 |
ORF3a | 39 | A39del | GCC | --- | 3 | 3 | B.1.160.24 | 0.013274 |
ORF3a | 39 | A39S | Gcc | Tcc | 3 | 3 | B.1.221 | 0.000213 |
ORF3a | 39 | A39V | gCc | gTc | 3 | 3 | B.1.36.17 | 0.001482 |
ORF3a | 39 | A39A | gcC | gcT | 3 | 3 | B.1.424 | 0.024194 |
ORF3a | 39 | A39del | GCC | --- | 3 | 3 | B.1.427 | 0.000151 |
ORF3a | 39 | A39T | Gcc | Acc | 3 | 3 | B.1.429 | 0.000071 |
ORF3a | 39 | A39T | Gcc | Acc | 3 | 3 | B.1.497 | 0.000944 |
ORF3a | 39 | A39S | Gcc | Tcc | 3 | 3 | B.1.499 | 0.003151 |
ORF3a | 39 | A39T | Gcc | Acc | 3 | 3 | C.37 | 0.000348 |
ORF3a | 39 | A39A | gcC | gcA | 3 | 3 | P.1.15 | 0.000697 |
ORF3a | 39 | A39T | Gcc | Acc | 3 | 3 | P.1.17 | 0.000485 |
ORF3a | 39 | A39A | gcC | gcT | 3 | 3 | P.2 | 0.00056 |
ORF3a | 39 | A39A | gcC | gcT | 3 | 3 | Q.4 | 0.001364 |
ORF3a | 39 | A39del | GCC | --- | 3 | 3 | U.3 | 0.011583 |
ORF3a | 39 | A39V | gCC | gTT | 2 | 2 | 0.111111 | |
ORF3a | 39 | A39G | gCc | gGc | 1 | 2 | A | 0.000387 |
ORF3a | 39 | A39G | gCC | gGA | 1 | 2 | A | 0.000387 |
ORF3a | 39 | A39F | GCc | TTc | 2 | 2 | All | 0 |
ORF3a | 39 | A39del1 | gCc | g-c | 2 | 2 | All | 0 |
ORF3a | 39 | A39del2 | GCC | --N | 1 | 2 | All | 0 |
ORF3a | 39 | A39del2 | gCC | g-- | 1 | 2 | All | 0 |
ORF3a | 39 | A39T | Gcc | Acc | 2 | 2 | AU.1 | 0.002532 |
ORF3a | 39 | A39D | gCc | gAc | 2 | 2 | AY.102 | 0.000053 |
ORF3a | 39 | A39S | Gcc | Tcc | 2 | 2 | AY.103 | 0.000012 |
ORF3a | 39 | A39T | Gcc | Acc | 2 | 2 | AY.103 | 0.000012 |
ORF3a | 39 | A39T | Gcc | Acc | 2 | 2 | AY.108 | 0.002205 |
ORF3a | 39 | A39T | Gcc | Acc | 2 | 2 | AY.120 | 0.000074 |
ORF3a | 39 | A39del | GCC | --- | 2 | 2 | AY.13 | 0.000322 |
ORF3a | 39 | A39del | GCC | --- | 2 | 2 | AY.20 | 0.000078 |
ORF3a | 39 | A39T | Gcc | Acc | 2 | 2 | AY.26 | 0.000057 |
ORF3a | 39 | A39S | Gcc | Tcc | 2 | 2 | AY.26 | 0.000057 |
ORF3a | 39 | A39S | Gcc | Tcc | 2 | 2 | AY.28 | 0.003781 |
ORF3a | 39 | A39S | GcC | TcT | 2 | 2 | AY.33 | 0.000134 |
ORF3a | 39 | A39T | Gcc | Acc | 2 | 2 | AY.4.2 | 0.000043 |
ORF3a | 39 | A39A | gcC | gcT | 2 | 2 | AY.4.5 | 0.000215 |
ORF3a | 39 | A39del | GCC | --- | 2 | 2 | AY.46.2 | 0.001271 |
ORF3a | 39 | A39V | gCc | gTc | 2 | 2 | AY.46.6 | 0.000144 |
ORF3a | 39 | A39T | Gcc | Acc | 2 | 2 | AY.47 | 0.000062 |
ORF3a | 39 | A39del | GCC | --- | 2 | 2 | AY.5 | 0.000041 |
ORF3a | 39 | A39del | GCC | --- | 2 | 2 | AY.59 | 0.001059 |
ORF3a | 39 | A39del | GCC | --- | 2 | 2 | AY.6 | 0.000082 |
ORF3a | 39 | A39S | Gcc | Tcc | 2 | 2 | AY.6 | 0.000082 |
ORF3a | 39 | A39del | GCC | --- | 2 | 2 | AY.67 | 0.000929 |
ORF3a | 39 | A39del | GCC | --- | 2 | 2 | AY.75 | 0.000112 |
ORF3a | 39 | A39A | gcC | gcA | 1 | 2 | AY.75 | 0.000056 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 2 | AY.75 | 0.000056 |
ORF3a | 39 | A39A | gcC | gcA | 1 | 2 | AY.75.1 | 0.00018 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 2 | AY.75.1 | 0.00018 |
ORF3a | 39 | A39del | GCC | --- | 2 | 2 | AY.81 | 0.003984 |
ORF3a | 39 | A39A | gcC | gcT | 2 | 2 | AY.84 | 0.000875 |
ORF3a | 39 | A39del | GCC | --- | 2 | 2 | AY.9.2 | 0.000073 |
ORF3a | 39 | A39S | Gcc | Tcc | 2 | 2 | AY.9.2 | 0.000073 |
ORF3a | 39 | A39A | gcC | gcA | 2 | 2 | AY.9.2 | 0.000073 |
ORF3a | 39 | A39del | GCC | --- | 2 | 2 | AY.98 | 0.000158 |
ORF3a | 39 | A39D | gCc | gAc | 2 | 2 | AY.99.2 | 0.000184 |
ORF3a | 39 | A39A | gcC | gcA | 2 | 2 | AZ.1 | 0.001735 |
ORF3a | 39 | A39V | gCc | gTc | 2 | 2 | B.1.1 | 0.000036 |
ORF3a | 39 | A39T | Gcc | Acc | 2 | 2 | B.1.1.1 | 0.000653 |
ORF3a | 39 | A39A | gcC | gcT | 2 | 2 | B.1.1.1 | 0.000653 |
ORF3a | 39 | A39A | gcC | gcT | 2 | 2 | B.1.1.214 | 0.000111 |
ORF3a | 39 | A39V | gCc | gTc | 2 | 2 | B.1.1.270 | 0.020619 |
ORF3a | 39 | A39A | gcC | gcT | 2 | 2 | B.1.1.317 | 0.000823 |
ORF3a | 39 | A39S | Gcc | Tcc | 2 | 2 | B.1.1.376 | 0.011905 |
ORF3a | 39 | A39del | GCC | --- | 2 | 2 | B.1.1.519 | 0.000079 |
ORF3a | 39 | A39A | gcC | gcT | 2 | 2 | B.1.1.63 | 0.000772 |
ORF3a | 39 | A39T | Gcc | Acc | 2 | 2 | B.1.160 | 0.000062 |
ORF3a | 39 | A39S | Gcc | Tcc | 2 | 2 | B.1.160 | 0.000062 |
ORF3a | 39 | A39del | GCC | --- | 2 | 2 | B.1.160.33 | 0.00885 |
ORF3a | 39 | A39A | gcC | gcT | 2 | 2 | B.1.177.21 | 0.000153 |
ORF3a | 39 | A39A | gcC | gcT | 2 | 2 | B.1.177.86 | 0.000367 |
ORF3a | 39 | A39A | gcC | gcT | 2 | 2 | B.1.232 | 0.001075 |
ORF3a | 39 | A39A | gcC | gcT | 2 | 2 | B.1.241 | 0.001623 |
ORF3a | 39 | A39T | Gcc | Acc | 2 | 2 | B.1.332 | 0.006993 |
ORF3a | 39 | A39T | Gcc | Acc | 2 | 2 | B.1.351 | 0.000059 |
ORF3a | 39 | A39A | gcC | gcT | 2 | 2 | B.1.36.36 | 0.001204 |
ORF3a | 39 | A39A | gcC | gcT | 2 | 2 | B.1.362 | 0.003082 |
ORF3a | 39 | A39A | gcC | gcT | 2 | 2 | B.1.390 | 0.021277 |
ORF3a | 39 | A39A | gcC | gcT | 2 | 2 | B.1.427 | 0.000101 |
ORF3a | 39 | A39D | gCc | gAc | 2 | 2 | B.1.429 | 0.000047 |
ORF3a | 39 | A39A | gcC | gcT | 2 | 2 | B.1.438.1 | 0.000215 |
ORF3a | 39 | A39T | Gcc | Acc | 2 | 2 | B.1.470 | 0.002809 |
ORF3a | 39 | A39A | gcC | gcT | 2 | 2 | B.1.525 | 0.000226 |
ORF3a | 39 | A39del | GCC | --- | 2 | 2 | B.1.525 | 0.000226 |
ORF3a | 39 | A39T | Gcc | Acc | 2 | 2 | B.1.576 | 0.001813 |
ORF3a | 39 | A39V | gCc | gTc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF3a | 39 | A39del | GCC | --- | 2 | 2 | B.1.621 | 0.000177 |
ORF3a | 39 | A39A | gcC | gcT | 2 | 2 | B.6 | 0.00182 |
ORF3a | 39 | A39del | GCC | --- | 2 | 2 | D.2 | 0.00015 |
ORF3a | 39 | A39T | Gcc | Acc | 2 | 2 | P.1.12 | 0.000968 |
ORF3a | 39 | A39A | gcC | gcT | 2 | 2 | P.1.4 | 0.001953 |
ORF3a | 39 | A39A | gcC | gcA | 2 | 2 | P.6 | 0.006289 |
ORF3a | 39 | A39A | gcC | gcA | 1 | 1 | A | 0.000387 |
ORF3a | 39 | A39A | gcC | gcG | 1 | 1 | A.2 | 0.000662 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | A.2.3 | 0.004739 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | A.2.4 | 0.003367 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | AD.2 | 0.000219 |
ORF3a | 39 | A39del2 | gCC | g-- | 1 | 1 | AH.3 | 0.003802 |
ORF3a | 39 | A39I | GCc | ATc | 1 | 1 | All | 0 |
ORF3a | 39 | A39E | gCC | gAA | 1 | 1 | All | 0 |
ORF3a | 39 | A39S | Gcc | Tcc | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 39 | A39T | Gcc | Acc | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 39 | A39V | gCc | gTc | 1 | 1 | AY.103 | 0.000006 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | AY.107 | 0.000466 |
ORF3a | 39 | A39A | gcC | gcA | 1 | 1 | AY.108 | 0.001103 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | AY.11 | 0.001339 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | AY.110 | 0.000113 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 39 | A39V | gCc | gTc | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | AY.114 | 0.000231 |
ORF3a | 39 | A39S | Gcc | Tcc | 1 | 1 | AY.116 | 0.000287 |
ORF3a | 39 | A39A | gcC | gcA | 1 | 1 | AY.116 | 0.000287 |
ORF3a | 39 | A39G | gCc | gGc | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 39 | A39T | Gcc | Acc | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 39 | A39A | gcC | gcG | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 39 | A39P | Gcc | Ccc | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 39 | A39A | gcC | gcG | 1 | 1 | AY.121 | 0.000135 |
ORF3a | 39 | A39V | gCc | gTc | 1 | 1 | AY.121 | 0.000135 |
ORF3a | 39 | A39V | gCc | gTc | 1 | 1 | AY.16 | 0.00038 |
ORF3a | 39 | A39S | Gcc | Tcc | 1 | 1 | AY.16.1 | 0.00047 |
ORF3a | 39 | A39A | gcC | gcG | 1 | 1 | AY.2 | 0.000356 |
ORF3a | 39 | A39S | Gcc | Tcc | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 39 | A39T | Gcc | Acc | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 39 | A39T | Gcc | Acc | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 39 | A39V | gCc | gTc | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | AY.28 | 0.00189 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 39 | A39D | gCc | gAc | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 39 | A39A | gcC | gcA | 1 | 1 | AY.29.1 | 0.000221 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | AY.29.1 | 0.000221 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 39 | A39S | Gcc | Tcc | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 39 | A39A | gcC | gcA | 1 | 1 | AY.32 | 0.000532 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | AY.34 | 0.000097 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | AY.35 | 0.000233 |
ORF3a | 39 | A39T | Gcc | Acc | 1 | 1 | AY.36 | 0.000148 |
ORF3a | 39 | A39T | Gcc | Acc | 1 | 1 | AY.38 | 0.000499 |
ORF3a | 39 | A39S | Gcc | Tcc | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 39 | A39D | gCc | gAc | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 39 | A39T | Gcc | Acc | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 39 | A39S | Gcc | Tcc | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 39 | A39S | Gcc | Tcc | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF3a | 39 | A39T | Gcc | Acc | 1 | 1 | AY.41 | 0.000294 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 39 | A39V | gCc | gTc | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 39 | A39F | GCc | TTc | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 39 | A39E | gCC | gAA | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 39 | A39T | Gcc | Acc | 1 | 1 | AY.45 | 0.000122 |
ORF3a | 39 | A39D | gCc | gAc | 1 | 1 | AY.45 | 0.000122 |
ORF3a | 39 | A39V | gCc | gTc | 1 | 1 | AY.45 | 0.000122 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | AY.46.1 | 0.001027 |
ORF3a | 39 | A39S | Gcc | Tcc | 1 | 1 | AY.46.4 | 0.000165 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | AY.46.6 | 0.000072 |
ORF3a | 39 | A39T | Gcc | Acc | 1 | 1 | AY.46.6 | 0.000072 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | AY.48 | 0.000465 |
ORF3a | 39 | A39S | Gcc | Tcc | 1 | 1 | AY.5 | 0.000021 |
ORF3a | 39 | A39T | Gcc | Acc | 1 | 1 | AY.5.4 | 0.000277 |
ORF3a | 39 | A39T | Gcc | Acc | 1 | 1 | AY.57 | 0.000656 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | AY.58 | 0.000907 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 39 | A39A | gcC | gcA | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | AY.60 | 0.000938 |
ORF3a | 39 | A39D | gCc | gAc | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 39 | A39V | gCc | gTc | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | AY.65 | 0.000533 |
ORF3a | 39 | A39D | gCc | gAc | 1 | 1 | AY.69 | 0.000187 |
ORF3a | 39 | A39A | gcC | gcA | 1 | 1 | AY.69 | 0.000187 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | AY.7 | 0.000196 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | AY.7.1 | 0.000113 |
ORF3a | 39 | A39T | Gcc | Acc | 1 | 1 | AY.75 | 0.000056 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF3a | 39 | A39S | Gcc | Tcc | 1 | 1 | AY.75.1 | 0.00018 |
ORF3a | 39 | A39T | Gcc | Acc | 1 | 1 | AY.75.1 | 0.00018 |
ORF3a | 39 | A39T | Gcc | Acc | 1 | 1 | AY.77 | 0.001127 |
ORF3a | 39 | A39T | Gcc | Acc | 1 | 1 | AY.79 | 0.001211 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | AY.81 | 0.001992 |
ORF3a | 39 | A39A | gcC | gcA | 1 | 1 | AY.85 | 0.000427 |
ORF3a | 39 | A39S | Gcc | Tcc | 1 | 1 | AY.9 | 0.000068 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | AY.90 | 0.000684 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | AY.91 | 0.00073 |
ORF3a | 39 | A39A | gcC | gcA | 1 | 1 | AY.93 | 0.000273 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | AY.93 | 0.000273 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 39 | A39D | gCc | gAc | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | AY.99 | 0.001049 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | AY.99 | 0.001049 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | B | 0.000128 |
ORF3a | 39 | A39P | Gcc | Ccc | 1 | 1 | B.1 | 0.000009 |
ORF3a | 39 | A39S | Gcc | Tcc | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 39 | A39P | Gcc | Ccc | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 39 | A39V | gCc | gTc | 1 | 1 | B.1.1.1 | 0.000327 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | B.1.1.113 | 0.006993 |
ORF3a | 39 | A39V | gCC | gTT | 1 | 1 | B.1.1.139 | 0.022727 |
ORF3a | 39 | A39A | gcC | gcA | 1 | 1 | B.1.1.176 | 0.000439 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | B.1.1.204 | 0.00304 |
ORF3a | 39 | A39S | Gcc | Tcc | 1 | 1 | B.1.1.205 | 0.003717 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF3a | 39 | A39S | Gcc | Tcc | 1 | 1 | B.1.1.222 | 0.000204 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | B.1.1.222 | 0.000204 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | B.1.1.225 | 0.007194 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | B.1.1.269 | 0.001353 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | B.1.1.273 | 0.006757 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | B.1.1.28 | 0.000311 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | B.1.1.284 | 0.000107 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | B.1.1.316 | 0.000925 |
ORF3a | 39 | A39T | Gcc | Acc | 1 | 1 | B.1.1.326 | 0.001761 |
ORF3a | 39 | A39A | gcC | gcA | 1 | 1 | B.1.1.326 | 0.001761 |
ORF3a | 39 | A39A | gcC | gcA | 1 | 1 | B.1.1.33 | 0.000421 |
ORF3a | 39 | A39S | Gcc | Tcc | 1 | 1 | B.1.1.351 | 0.002793 |
ORF3a | 39 | A39S | Gcc | Tcc | 1 | 1 | B.1.1.354 | 0.004386 |
ORF3a | 39 | A39T | Gcc | Acc | 1 | 1 | B.1.1.354 | 0.004386 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | B.1.1.39 | 0.00051 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 39 | A39A | gcC | gcA | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | B.1.1.421 | 0.030303 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | B.1.1.432 | 0.001266 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | B.1.1.467 | 0.019231 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 39 | A39S | Gcc | Tcc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 39 | A39del1 | gCc | g-c | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 39 | A39I | GCc | ATc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 39 | A39T | Gcc | Acc | 1 | 1 | B.1.1.70 | 0.000341 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | B.1.108 | 0.005814 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | B.1.126 | 0.001276 |
ORF3a | 39 | A39D | gCc | gAc | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | B.1.160.12 | 0.00641 |
ORF3a | 39 | A39D | gCc | gAc | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 39 | A39S | Gcc | Tcc | 1 | 1 | B.1.177.17 | 0.000821 |
ORF3a | 39 | A39D | gCc | gAc | 1 | 1 | B.1.177.4 | 0.000211 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF3a | 39 | A39T | Gcc | Acc | 1 | 1 | B.1.177.76 | 0.002494 |
ORF3a | 39 | A39D | gCc | gAc | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF3a | 39 | A39T | Gcc | Acc | 1 | 1 | B.1.214.2 | 0.0006 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 39 | A39T | Gcc | Acc | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 39 | A39A | gcC | gcA | 1 | 1 | B.1.234 | 0.000132 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | B.1.241 | 0.000812 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 39 | A39V | gCc | gTc | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 39 | A39T | Gcc | Acc | 1 | 1 | B.1.258.11 | 0.000396 |
ORF3a | 39 | A39T | Gcc | Acc | 1 | 1 | B.1.258.16 | 0.001637 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF3a | 39 | A39A | gcC | gcA | 1 | 1 | B.1.258.7 | 0.001912 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | B.1.289 | 0.00266 |
ORF3a | 39 | A39A | gcC | gcA | 1 | 1 | B.1.311 | 0.000275 |
ORF3a | 39 | A39A | gcC | gcA | 1 | 1 | B.1.324 | 0.001605 |
ORF3a | 39 | A39A | gcC | gcA | 1 | 1 | B.1.329 | 0.000608 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | B.1.349 | 0.000715 |
ORF3a | 39 | A39A | gcC | gcA | 1 | 1 | B.1.358 | 0.05 |
ORF3a | 39 | A39T | Gcc | Acc | 1 | 1 | B.1.36 | 0.000146 |
ORF3a | 39 | A39S | Gcc | Tcc | 1 | 1 | B.1.36.31 | 0.001751 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | B.1.361 | 0.001289 |
ORF3a | 39 | A39V | gCc | gTc | 1 | 1 | B.1.362.2 | 0.004717 |
ORF3a | 39 | A39A | gcC | gcG | 1 | 1 | B.1.367 | 0.000792 |
ORF3a | 39 | A39S | Gcc | Tcc | 1 | 1 | B.1.369 | 0.000285 |
ORF3a | 39 | A39T | Gcc | Acc | 1 | 1 | B.1.377 | 0.004566 |
ORF3a | 39 | A39T | Gcc | Acc | 1 | 1 | B.1.427 | 0.00005 |
ORF3a | 39 | A39T | Gcc | Acc | 1 | 1 | B.1.438.1 | 0.000107 |
ORF3a | 39 | A39S | Gcc | Tcc | 1 | 1 | B.1.438.4 | 0.021277 |
ORF3a | 39 | A39T | Gcc | Acc | 1 | 1 | B.1.456 | 0.003268 |
ORF3a | 39 | A39V | gCc | gTc | 1 | 1 | B.1.466.2 | 0.000391 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | B.1.499 | 0.00105 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | B.1.506 | 0.02381 |
ORF3a | 39 | A39V | gCc | gTc | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 39 | A39D | gCc | gAc | 1 | 1 | B.1.526 | 0.000024 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | B.1.564.1 | 0.001577 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | B.1.568 | 0.001111 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | B.1.575 | 0.000303 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | B.1.586 | 0.010989 |
ORF3a | 39 | A39D | gCc | gAc | 1 | 1 | B.1.595 | 0.000261 |
ORF3a | 39 | A39P | Gcc | Ccc | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 39 | A39del1 | gCc | g-c | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 39 | A39D | gCc | gAc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 39 | A39del2 | GCC | --N | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 39 | A39T | Gcc | Acc | 1 | 1 | B.1.618 | 0.004032 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | B.1.620 | 0.000946 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | B.1.621 | 0.000089 |
ORF3a | 39 | A39T | Gcc | Acc | 1 | 1 | B.1.621.1 | 0.000506 |
ORF3a | 39 | A39A | gcC | gcA | 1 | 1 | B.1.628 | 0.000352 |
ORF3a | 39 | A39F | GCc | TTc | 1 | 1 | B.1.630 | 0.005236 |
ORF3a | 39 | A39P | Gcc | Ccc | 1 | 1 | B.1.636 | 0.006711 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | B.1.637 | 0.000073 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF3a | 39 | A39S | Gcc | Tcc | 1 | 1 | B.3 | 0.000831 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | B.38 | 0.02381 |
ORF3a | 39 | A39T | Gcc | Acc | 1 | 1 | B.51 | 0.047619 |
ORF3a | 39 | A39V | gCc | gTc | 1 | 1 | B.61 | 0.005747 |
ORF3a | 39 | A39A | gcC | gcA | 1 | 1 | C.36 | 0.000911 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | C.36.3 | 0.000567 |
ORF3a | 39 | A39S | Gcc | Tcc | 1 | 1 | C.37 | 0.000116 |
ORF3a | 39 | A39V | gCc | gTc | 1 | 1 | C.37 | 0.000116 |
ORF3a | 39 | A39S | Gcc | Tcc | 1 | 1 | P.1 | 0.000016 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | P.1.12 | 0.000484 |
ORF3a | 39 | A39V | gCc | gTc | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 39 | A39del | GCC | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | P.1.17 | 0.000162 |
ORF3a | 39 | A39D | gCc | gAc | 1 | 1 | Q.8 | 0.000165 |
ORF3a | 39 | A39T | Gcc | Acc | 1 | 1 | Q.8 | 0.000165 |
ORF3a | 39 | A39A | gcC | gcT | 1 | 1 | W.1 | 0.008696 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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