CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 38 | Q38R | nonsyn | cAa | cGa | 16292 | 16290 | 0.999877 | 25504-25506 | |
ORF3a | 38 | Q38R | nonsyn | cAA | cGG | 16292 | 2 | 0.00012276 | 25504-25506 | |
ORF3a | 38 | Q38L | nonsyn | cAa | cTa | 2549 | 2541 | 0.996862 | 25504-25506 | |
ORF3a | 38 | Q38L | nonsyn | CAa | TTa | 2549 | 8 | 0.00313849 | 25504-25506 | |
ORF3a | 38 | Q38del | del | CAA | --- | 765 | 765 | 1 | 25504-25506 | |
ORF3a | 38 | Q38P | nonsyn | cAa | cCa | 467 | 467 | 1 | 25504-25506 | |
ORF3a | 38 | Q38Q | syn | caA | caG | 382 | 382 | 1 | 25504-25506 | |
ORF3a | 38 | Q38E | nonsyn | Caa | Gaa | 281 | 281 | 1 | 25504-25506 | |
ORF3a | 38 | Q38K | nonsyn | Caa | Aaa | 147 | 147 | 1 | 25504-25506 | |
ORF3a | 38 | Q38H | nonsyn | caA | caT | 128 | 85 | 0.664062 | 25504-25506 | |
ORF3a | 38 | Q38H | nonsyn | caA | caC | 128 | 43 | 0.335938 | 25504-25506 | |
ORF3a | 38 | Q38X | nonsyn | Caa | Taa | 81 | 81 | 1 | 25504-25506 | |
ORF3a | 38 | Q38del1 | del | cAa | c-a | 3 | 2 | 0.666667 | 25504-25506 | |
ORF3a | 38 | Q38del1 | del | Caa | -aa | 3 | 1 | 0.333333 | 25504-25506 | |
ORF3a | 38 | Q38Y | nonsyn | CaA | TaC | 2 | 2 | 1 | 25504-25506 | |
ORF3a | 38 | Q38W | nonsyn | CAA | TGG | 2 | 2 | 1 | 25504-25506 | |
ORF3a | 38 | Q38S | nonsyn | CAa | TCa | 1 | 1 | 1 | 25504-25506 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 38 | Q38R | cAa | cGa | 16290 | 16292 | All | 0.003116 |
ORF3a | 38 | Q38R | cAA | cGG | 2 | 16292 | All | 0 |
ORF3a | 38 | Q38R | cAa | cGa | 13760 | 13761 | B.1.221 | 0.977412 |
ORF3a | 38 | Q38R | cAA | cGG | 1 | 13761 | B.1.221 | 0.000071 |
ORF3a | 38 | Q38L | cAa | cTa | 2541 | 2549 | All | 0.000486 |
ORF3a | 38 | Q38L | CAa | TTa | 8 | 2549 | All | 0.000002 |
ORF3a | 38 | Q38L | cAa | cTa | 1571 | 1577 | B.1.1.7 | 0.001406 |
ORF3a | 38 | Q38L | CAa | TTa | 6 | 1577 | B.1.1.7 | 0.000005 |
ORF3a | 38 | Q38R | cAa | cGa | 1197 | 1197 | B.1.221.3 | 0.9975 |
ORF3a | 38 | Q38del | CAA | --- | 765 | 765 | All | 0.000146 |
ORF3a | 38 | Q38L | cAa | cTa | 639 | 639 | B.1.1.519 | 0.025375 |
ORF3a | 38 | Q38P | cAa | cCa | 467 | 467 | All | 0.000089 |
ORF3a | 38 | Q38Q | caA | caG | 382 | 382 | All | 0.000073 |
ORF3a | 38 | Q38R | cAa | cGa | 344 | 344 | B.1.221.1 | 1 |
ORF3a | 38 | Q38P | cAa | cCa | 308 | 308 | B.1.1.231 | 0.95356 |
ORF3a | 38 | Q38E | Caa | Gaa | 281 | 281 | All | 0.000054 |
ORF3a | 38 | Q38R | cAa | cGa | 249 | 249 | B.1.221.2 | 1 |
ORF3a | 38 | Q38R | cAa | cGa | 240 | 240 | B.1.221.4 | 1 |
ORF3a | 38 | Q38del | CAA | --- | 192 | 192 | AY.26 | 0.005436 |
ORF3a | 38 | Q38del | CAA | --- | 153 | 153 | B.1.630 | 0.801047 |
ORF3a | 38 | Q38K | Caa | Aaa | 147 | 147 | All | 0.000028 |
ORF3a | 38 | Q38R | cAa | cGa | 139 | 139 | AY.26 | 0.003935 |
ORF3a | 38 | Q38H | caA | caT | 85 | 128 | All | 0.000016 |
ORF3a | 38 | Q38H | caA | caC | 43 | 128 | All | 0.000008 |
ORF3a | 38 | Q38Q | caA | caG | 87 | 87 | B.1.177.86 | 0.01596 |
ORF3a | 38 | Q38X | Caa | Taa | 81 | 81 | All | 0.000015 |
ORF3a | 38 | Q38E | Caa | Gaa | 81 | 81 | AY.4 | 0.000126 |
ORF3a | 38 | Q38R | cAa | cGa | 79 | 79 | B.1 | 0.000724 |
ORF3a | 38 | Q38P | cAa | cCa | 77 | 77 | AL.1 | 1 |
ORF3a | 38 | Q38R | cAa | cGa | 77 | 77 | B.1.1.7 | 0.000069 |
ORF3a | 38 | Q38E | Caa | Gaa | 72 | 72 | B.1.427 | 0.003636 |
ORF3a | 38 | Q38Q | caA | caG | 69 | 69 | AY.109 | 0.051036 |
ORF3a | 38 | Q38L | cAa | cTa | 68 | 68 | AY.4 | 0.000106 |
ORF3a | 38 | Q38del | CAA | --- | 54 | 54 | B.1.177.82 | 0.025776 |
ORF3a | 38 | Q38del | CAA | --- | 50 | 50 | B.1.1.7 | 0.000045 |
ORF3a | 38 | Q38L | cAa | cTa | 45 | 45 | B.1.1 | 0.000816 |
ORF3a | 38 | Q38del | CAA | --- | 43 | 43 | AY.43 | 0.000191 |
ORF3a | 38 | Q38L | cAa | cTa | 41 | 41 | AY.39 | 0.001013 |
ORF3a | 38 | Q38E | Caa | Gaa | 39 | 39 | AY.102 | 0.001034 |
ORF3a | 38 | Q38Q | caA | caG | 39 | 39 | B.1.1.7 | 0.000035 |
ORF3a | 38 | Q38R | cAa | cGa | 35 | 36 | B.1.177 | 0.000461 |
ORF3a | 38 | Q38R | cAA | cGG | 1 | 36 | B.1.177 | 0.000013 |
ORF3a | 38 | Q38del | CAA | --- | 35 | 35 | B.1.177 | 0.000461 |
ORF3a | 38 | Q38K | Caa | Aaa | 32 | 32 | B.1.617.2 | 0.00012 |
ORF3a | 38 | Q38P | cAa | cCa | 31 | 31 | B.1.1.7 | 0.000028 |
ORF3a | 38 | Q38del | CAA | --- | 30 | 30 | AY.4 | 0.000047 |
ORF3a | 38 | Q38H | caA | caC | 15 | 29 | B.1.1.7 | 0.000013 |
ORF3a | 38 | Q38H | caA | caT | 14 | 29 | B.1.1.7 | 0.000013 |
ORF3a | 38 | Q38L | cAa | cTa | 25 | 25 | AY.5.4 | 0.006918 |
ORF3a | 38 | Q38E | Caa | Gaa | 25 | 25 | B.1.617.2 | 0.000094 |
ORF3a | 38 | Q38Q | caA | caG | 24 | 24 | AY.120 | 0.000892 |
ORF3a | 38 | Q38K | Caa | Aaa | 24 | 24 | AY.61 | 0.002515 |
ORF3a | 38 | Q38Q | caA | caG | 23 | 23 | AY.4 | 0.000036 |
ORF3a | 38 | Q38del | CAA | --- | 23 | 23 | B.1.1 | 0.000417 |
ORF3a | 38 | Q38del | CAA | --- | 20 | 20 | AY.25 | 0.00012 |
ORF3a | 38 | Q38H | caA | caT | 16 | 19 | AY.25 | 0.000096 |
ORF3a | 38 | Q38H | caA | caC | 3 | 19 | AY.25 | 0.000018 |
ORF3a | 38 | Q38Q | caA | caG | 18 | 18 | B.1.2 | 0.000158 |
ORF3a | 38 | Q38E | Caa | Gaa | 17 | 17 | B.1.1.25 | 0.009665 |
ORF3a | 38 | Q38L | cAa | cTa | 17 | 17 | B.1.1.412 | 0.129771 |
ORF3a | 38 | Q38P | cAa | cCa | 15 | 15 | AY.43 | 0.000066 |
ORF3a | 38 | Q38R | cAa | cGa | 15 | 15 | B.1.617.2 | 0.000056 |
ORF3a | 38 | Q38L | cAa | cTa | 14 | 14 | AY.103 | 0.000087 |
ORF3a | 38 | Q38R | cAa | cGa | 13 | 13 | AY.103 | 0.000081 |
ORF3a | 38 | Q38R | cAa | cGa | 13 | 13 | B.1.210 | 0.027719 |
ORF3a | 38 | Q38del | CAA | --- | 13 | 13 | B.1.617.2 | 0.000049 |
ORF3a | 38 | Q38K | Caa | Aaa | 12 | 12 | AY.32 | 0.00639 |
ORF3a | 38 | Q38R | cAa | cGa | 12 | 12 | B.1.1 | 0.000218 |
ORF3a | 38 | Q38Q | caA | caG | 12 | 12 | B.1.621.1 | 0.00607 |
ORF3a | 38 | Q38K | Caa | Aaa | 11 | 11 | AY.25 | 0.000066 |
ORF3a | 38 | Q38Q | caA | caG | 11 | 11 | B.1.617.2 | 0.000041 |
ORF3a | 38 | Q38L | cAa | cTa | 10 | 10 | AY.25 | 0.00006 |
ORF3a | 38 | Q38Q | caA | caG | 10 | 10 | AY.3 | 0.000099 |
ORF3a | 38 | Q38P | cAa | cCa | 10 | 10 | B.1 | 0.000092 |
ORF3a | 38 | Q38L | cAa | cTa | 10 | 10 | B.1.617.2 | 0.000038 |
ORF3a | 38 | Q38E | Caa | Gaa | 9 | 9 | AY.39 | 0.000222 |
ORF3a | 38 | Q38Q | caA | caG | 9 | 9 | AY.76 | 0.043478 |
ORF3a | 38 | Q38E | Caa | Gaa | 9 | 9 | B.1.1.7 | 0.000008 |
ORF3a | 38 | Q38del | CAA | --- | 9 | 9 | B.1.258 | 0.000599 |
ORF3a | 38 | Q38Q | caA | caG | 9 | 9 | B.1.526 | 0.000212 |
ORF3a | 38 | Q38del | CAA | --- | 8 | 8 | AY.103 | 0.00005 |
ORF3a | 38 | Q38L | cAa | cTa | 8 | 8 | AY.33 | 0.000534 |
ORF3a | 38 | Q38K | Caa | Aaa | 8 | 8 | AY.4 | 0.000012 |
ORF3a | 38 | Q38H | caA | caT | 8 | 8 | AY.7.1 | 0.000902 |
ORF3a | 38 | Q38P | cAa | cCa | 8 | 8 | B.1.1 | 0.000145 |
ORF3a | 38 | Q38H | caA | caT | 7 | 8 | B.1.1 | 0.000127 |
ORF3a | 38 | Q38H | caA | caC | 1 | 8 | B.1.1 | 0.000018 |
ORF3a | 38 | Q38X | Caa | Taa | 8 | 8 | B.1.1.7 | 0.000007 |
ORF3a | 38 | Q38R | cAa | cGa | 8 | 8 | B.1.160 | 0.00025 |
ORF3a | 38 | Q38L | cAa | cTa | 8 | 8 | B.1.258 | 0.000532 |
ORF3a | 38 | Q38del | CAA | --- | 7 | 7 | AY.39 | 0.000173 |
ORF3a | 38 | Q38X | Caa | Taa | 7 | 7 | AY.4 | 0.000011 |
ORF3a | 38 | Q38R | cAa | cGa | 7 | 7 | AY.4 | 0.000011 |
ORF3a | 38 | Q38X | Caa | Taa | 7 | 7 | B.1 | 0.000064 |
ORF3a | 38 | Q38L | cAa | cTa | 7 | 7 | B.1.1.70 | 0.002387 |
ORF3a | 38 | Q38R | cAa | cGa | 7 | 7 | B.1.160.32 | 0.030043 |
ORF3a | 38 | Q38R | cAa | cGa | 7 | 7 | B.1.177.43 | 0.01034 |
ORF3a | 38 | Q38H | caA | caT | 5 | 7 | B.1.2 | 0.000044 |
ORF3a | 38 | Q38H | caA | caC | 2 | 7 | B.1.2 | 0.000018 |
ORF3a | 38 | Q38R | cAa | cGa | 7 | 7 | B.1.36.1 | 0.007982 |
ORF3a | 38 | Q38L | cAa | cTa | 7 | 7 | Q.8 | 0.001154 |
ORF3a | 38 | Q38del | CAA | --- | 6 | 6 | AY.44 | 0.000037 |
ORF3a | 38 | Q38K | Caa | Aaa | 6 | 6 | B.1.160 | 0.000187 |
ORF3a | 38 | Q38E | Caa | Gaa | 6 | 6 | B.1.2 | 0.000053 |
ORF3a | 38 | Q38Q | caA | caG | 6 | 6 | B.1.429 | 0.000141 |
ORF3a | 38 | Q38H | caA | caC | 4 | 6 | B.1.617.2 | 0.000015 |
ORF3a | 38 | Q38H | caA | caT | 2 | 6 | B.1.617.2 | 0.000008 |
ORF3a | 38 | Q38del | CAA | --- | 6 | 6 | P.1 | 0.000095 |
ORF3a | 38 | Q38X | Caa | Taa | 5 | 5 | AY.103 | 0.000031 |
ORF3a | 38 | Q38H | caA | caT | 5 | 5 | AY.121 | 0.000677 |
ORF3a | 38 | Q38Q | caA | caG | 5 | 5 | AY.25 | 0.00003 |
ORF3a | 38 | Q38K | Caa | Aaa | 5 | 5 | AY.43 | 0.000022 |
ORF3a | 38 | Q38X | Caa | Taa | 5 | 5 | AY.43 | 0.000022 |
ORF3a | 38 | Q38H | caA | caT | 5 | 5 | AY.47 | 0.000156 |
ORF3a | 38 | Q38Q | caA | caG | 5 | 5 | AY.9.1 | 0.000419 |
ORF3a | 38 | Q38Q | caA | caG | 5 | 5 | B.1.1.50 | 0.003394 |
ORF3a | 38 | Q38K | Caa | Aaa | 5 | 5 | B.1.2 | 0.000044 |
ORF3a | 38 | Q38del | CAA | --- | 5 | 5 | B.1.2 | 0.000044 |
ORF3a | 38 | Q38del | CAA | --- | 5 | 5 | B.1.438.1 | 0.000536 |
ORF3a | 38 | Q38del | CAA | --- | 4 | 4 | AY.4.2 | 0.000087 |
ORF3a | 38 | Q38del | CAA | --- | 4 | 4 | AY.4.5 | 0.00043 |
ORF3a | 38 | Q38R | cAa | cGa | 4 | 4 | AY.43 | 0.000018 |
ORF3a | 38 | Q38E | Caa | Gaa | 4 | 4 | AY.9.2 | 0.000147 |
ORF3a | 38 | Q38L | cAa | cTa | 4 | 4 | B.1 | 0.000037 |
ORF3a | 38 | Q38del | CAA | --- | 4 | 4 | B.1 | 0.000037 |
ORF3a | 38 | Q38H | caA | caT | 3 | 4 | B.1 | 0.000027 |
ORF3a | 38 | Q38H | caA | caC | 1 | 4 | B.1 | 0.000009 |
ORF3a | 38 | Q38Q | caA | caG | 4 | 4 | B.1.1 | 0.000073 |
ORF3a | 38 | Q38K | Caa | Aaa | 4 | 4 | B.1.1.7 | 0.000004 |
ORF3a | 38 | Q38Q | caA | caG | 4 | 4 | B.1.160 | 0.000125 |
ORF3a | 38 | Q38Q | caA | caG | 4 | 4 | B.1.177 | 0.000053 |
ORF3a | 38 | Q38L | cAa | cTa | 4 | 4 | B.1.177.7 | 0.000659 |
ORF3a | 38 | Q38L | cAa | cTa | 4 | 4 | B.1.2 | 0.000035 |
ORF3a | 38 | Q38del | CAA | --- | 4 | 4 | P.1.9 | 0.019231 |
ORF3a | 38 | Q38del1 | cAa | c-a | 2 | 3 | All | 0 |
ORF3a | 38 | Q38del1 | Caa | -aa | 1 | 3 | All | 0 |
ORF3a | 38 | Q38H | caA | caC | 3 | 3 | AY.113 | 0.000427 |
ORF3a | 38 | Q38del | CAA | --- | 3 | 3 | AY.120 | 0.000112 |
ORF3a | 38 | Q38E | Caa | Gaa | 3 | 3 | AY.20 | 0.000117 |
ORF3a | 38 | Q38H | caA | caT | 2 | 3 | AY.4.2 | 0.000043 |
ORF3a | 38 | Q38H | caA | caC | 1 | 3 | AY.4.2 | 0.000022 |
ORF3a | 38 | Q38L | CAa | TTa | 2 | 3 | AY.43 | 0.000009 |
ORF3a | 38 | Q38L | cAa | cTa | 1 | 3 | AY.43 | 0.000004 |
ORF3a | 38 | Q38del | CAA | --- | 3 | 3 | AY.45 | 0.000365 |
ORF3a | 38 | Q38R | cAa | cGa | 3 | 3 | B.1.1.162 | 0.088235 |
ORF3a | 38 | Q38R | cAa | cGa | 3 | 3 | B.1.1.39 | 0.001529 |
ORF3a | 38 | Q38K | Caa | Aaa | 3 | 3 | B.1.1.398 | 0.009677 |
ORF3a | 38 | Q38R | cAa | cGa | 3 | 3 | B.1.1.519 | 0.000119 |
ORF3a | 38 | Q38del | CAA | --- | 3 | 3 | B.1.160.24 | 0.013274 |
ORF3a | 38 | Q38X | Caa | Taa | 3 | 3 | B.1.177 | 0.00004 |
ORF3a | 38 | Q38R | cAa | cGa | 3 | 3 | B.1.177.73 | 0.001699 |
ORF3a | 38 | Q38L | cAa | cTa | 3 | 3 | B.1.177.75 | 0.003122 |
ORF3a | 38 | Q38R | cAa | cGa | 3 | 3 | B.1.177.87 | 0.002183 |
ORF3a | 38 | Q38X | Caa | Taa | 3 | 3 | B.1.2 | 0.000026 |
ORF3a | 38 | Q38Q | caA | caG | 3 | 3 | B.1.258 | 0.0002 |
ORF3a | 38 | Q38L | cAa | cTa | 3 | 3 | B.1.351 | 0.000089 |
ORF3a | 38 | Q38del | CAA | --- | 3 | 3 | B.1.427 | 0.000151 |
ORF3a | 38 | Q38K | Caa | Aaa | 3 | 3 | B.1.527 | 0.011111 |
ORF3a | 38 | Q38L | cAa | cTa | 3 | 3 | B.1.577 | 0.002062 |
ORF3a | 38 | Q38K | Caa | Aaa | 3 | 3 | R.1 | 0.00027 |
ORF3a | 38 | Q38del | CAA | --- | 3 | 3 | U.3 | 0.011583 |
ORF3a | 38 | Q38H | caA | caC | 2 | 2 | 0.111111 | |
ORF3a | 38 | Q38X | Caa | Taa | 2 | 2 | 0.111111 | |
ORF3a | 38 | Q38Y | CaA | TaC | 2 | 2 | 0.111111 | |
ORF3a | 38 | Q38Y | CaA | TaC | 2 | 2 | All | 0 |
ORF3a | 38 | Q38W | CAA | TGG | 2 | 2 | All | 0 |
ORF3a | 38 | Q38Q | caA | caG | 2 | 2 | AY.102 | 0.000053 |
ORF3a | 38 | Q38K | Caa | Aaa | 2 | 2 | AY.102 | 0.000053 |
ORF3a | 38 | Q38K | Caa | Aaa | 2 | 2 | AY.103 | 0.000012 |
ORF3a | 38 | Q38Q | caA | caG | 2 | 2 | AY.103 | 0.000012 |
ORF3a | 38 | Q38R | cAa | cGa | 2 | 2 | AY.113 | 0.000285 |
ORF3a | 38 | Q38R | cAa | cGa | 2 | 2 | AY.121 | 0.000271 |
ORF3a | 38 | Q38del | CAA | --- | 2 | 2 | AY.13 | 0.000322 |
ORF3a | 38 | Q38H | caA | caT | 2 | 2 | AY.23 | 0.000139 |
ORF3a | 38 | Q38R | cAa | cGa | 2 | 2 | AY.25 | 0.000012 |
ORF3a | 38 | Q38E | Caa | Gaa | 2 | 2 | AY.25 | 0.000012 |
ORF3a | 38 | Q38K | Caa | Aaa | 2 | 2 | AY.29 | 0.000032 |
ORF3a | 38 | Q38L | cAa | cTa | 2 | 2 | AY.3 | 0.00002 |
ORF3a | 38 | Q38H | caA | caC | 1 | 2 | AY.4 | 0.000002 |
ORF3a | 38 | Q38H | caA | caT | 1 | 2 | AY.4 | 0.000002 |
ORF3a | 38 | Q38L | cAa | cTa | 2 | 2 | AY.42 | 0.00008 |
ORF3a | 38 | Q38Q | caA | caG | 2 | 2 | AY.43 | 0.000009 |
ORF3a | 38 | Q38H | caA | caC | 1 | 2 | AY.43 | 0.000004 |
ORF3a | 38 | Q38H | caA | caT | 1 | 2 | AY.43 | 0.000004 |
ORF3a | 38 | Q38X | Caa | Taa | 2 | 2 | AY.44 | 0.000012 |
ORF3a | 38 | Q38R | cAa | cGa | 2 | 2 | AY.44 | 0.000012 |
ORF3a | 38 | Q38Q | caA | caG | 2 | 2 | AY.44 | 0.000012 |
ORF3a | 38 | Q38del | CAA | --- | 2 | 2 | AY.46.2 | 0.001271 |
ORF3a | 38 | Q38del | CAA | --- | 2 | 2 | AY.5 | 0.000041 |
ORF3a | 38 | Q38H | caA | caT | 2 | 2 | AY.5 | 0.000041 |
ORF3a | 38 | Q38del | CAA | --- | 2 | 2 | AY.59 | 0.001059 |
ORF3a | 38 | Q38del | CAA | --- | 2 | 2 | AY.6 | 0.000082 |
ORF3a | 38 | Q38K | Caa | Aaa | 2 | 2 | AY.66 | 0.002139 |
ORF3a | 38 | Q38R | cAa | cGa | 2 | 2 | AY.66 | 0.002139 |
ORF3a | 38 | Q38del | CAA | --- | 2 | 2 | AY.67 | 0.000929 |
ORF3a | 38 | Q38del | CAA | --- | 2 | 2 | AY.75 | 0.000112 |
ORF3a | 38 | Q38H | caA | caT | 2 | 2 | AY.77 | 0.002255 |
ORF3a | 38 | Q38del | CAA | --- | 2 | 2 | AY.81 | 0.003984 |
ORF3a | 38 | Q38L | cAa | cTa | 2 | 2 | AY.9.2 | 0.000073 |
ORF3a | 38 | Q38del | CAA | --- | 2 | 2 | AY.9.2 | 0.000073 |
ORF3a | 38 | Q38Q | caA | caG | 2 | 2 | AY.9.2 | 0.000073 |
ORF3a | 38 | Q38del | CAA | --- | 2 | 2 | AY.98 | 0.000158 |
ORF3a | 38 | Q38L | cAa | cTa | 2 | 2 | AY.98 | 0.000158 |
ORF3a | 38 | Q38R | cAa | cGa | 2 | 2 | B | 0.000256 |
ORF3a | 38 | Q38Q | caA | caG | 2 | 2 | B.1 | 0.000018 |
ORF3a | 38 | Q38K | Caa | Aaa | 2 | 2 | B.1 | 0.000018 |
ORF3a | 38 | Q38L | cAa | cTa | 2 | 2 | B.1.1.1 | 0.000653 |
ORF3a | 38 | Q38R | cAa | cGa | 2 | 2 | B.1.1.25 | 0.001137 |
ORF3a | 38 | Q38L | cAa | cTa | 2 | 2 | B.1.1.262 | 0.030303 |
ORF3a | 38 | Q38R | cAa | cGa | 2 | 2 | B.1.1.398 | 0.006452 |
ORF3a | 38 | Q38del | CAA | --- | 2 | 2 | B.1.1.519 | 0.000079 |
ORF3a | 38 | Q38P | cAa | cCa | 2 | 2 | B.1.14 | 0.035088 |
ORF3a | 38 | Q38del | CAA | --- | 2 | 2 | B.1.160.33 | 0.00885 |
ORF3a | 38 | Q38P | cAa | cCa | 2 | 2 | B.1.2 | 0.000018 |
ORF3a | 38 | Q38R | cAa | cGa | 2 | 2 | B.1.2 | 0.000018 |
ORF3a | 38 | Q38R | cAa | cGa | 2 | 2 | B.1.22.1 | 0.0625 |
ORF3a | 38 | Q38P | cAa | cCa | 2 | 2 | B.1.221 | 0.000142 |
ORF3a | 38 | Q38W | CAA | TGG | 2 | 2 | B.1.221 | 0.000142 |
ORF3a | 38 | Q38X | Caa | Taa | 2 | 2 | B.1.258 | 0.000133 |
ORF3a | 38 | Q38Q | caA | caG | 2 | 2 | B.1.258.14 | 0.001961 |
ORF3a | 38 | Q38X | Caa | Taa | 2 | 2 | B.1.351 | 0.000059 |
ORF3a | 38 | Q38K | Caa | Aaa | 2 | 2 | B.1.351 | 0.000059 |
ORF3a | 38 | Q38H | caA | caT | 2 | 2 | B.1.351.2 | 0.000605 |
ORF3a | 38 | Q38X | Caa | Taa | 2 | 2 | B.1.399 | 0.003868 |
ORF3a | 38 | Q38L | cAa | cTa | 2 | 2 | B.1.429 | 0.000047 |
ORF3a | 38 | Q38L | cAa | cTa | 2 | 2 | B.1.438.1 | 0.000215 |
ORF3a | 38 | Q38del | CAA | --- | 2 | 2 | B.1.525 | 0.000226 |
ORF3a | 38 | Q38Q | caA | caG | 2 | 2 | B.1.575 | 0.000607 |
ORF3a | 38 | Q38L | cAa | cTa | 2 | 2 | B.1.596 | 0.000174 |
ORF3a | 38 | Q38R | cAa | cGa | 2 | 2 | B.1.596 | 0.000174 |
ORF3a | 38 | Q38X | Caa | Taa | 2 | 2 | B.1.617.2 | 0.000008 |
ORF3a | 38 | Q38del | CAA | --- | 2 | 2 | B.1.621 | 0.000177 |
ORF3a | 38 | Q38H | caA | caC | 1 | 2 | C.37 | 0.000116 |
ORF3a | 38 | Q38H | caA | caT | 1 | 2 | C.37 | 0.000116 |
ORF3a | 38 | Q38X | Caa | Taa | 2 | 2 | D.2 | 0.00015 |
ORF3a | 38 | Q38del | CAA | --- | 2 | 2 | D.2 | 0.00015 |
ORF3a | 38 | Q38L | cAa | cTa | 2 | 2 | P.1 | 0.000032 |
ORF3a | 38 | Q38Q | caA | caG | 2 | 2 | P.1 | 0.000032 |
ORF3a | 38 | Q38L | cAa | cTa | 2 | 2 | P.1.16 | 0.000748 |
ORF3a | 38 | Q38P | cAa | cCa | 2 | 2 | W.2 | 0.009662 |
ORF3a | 38 | Q38L | cAa | cTa | 1 | 1 | A | 0.000387 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | A.1 | 0.000282 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | A.2.3 | 0.004739 |
ORF3a | 38 | Q38S | CAa | TCa | 1 | 1 | All | 0 |
ORF3a | 38 | Q38Q | caA | caG | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 38 | Q38X | Caa | Taa | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 38 | Q38H | caA | caT | 1 | 1 | AY.103 | 0.000006 |
ORF3a | 38 | Q38K | Caa | Aaa | 1 | 1 | AY.110 | 0.000113 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | AY.114 | 0.000231 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 38 | Q38X | Caa | Taa | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 38 | Q38E | Caa | Gaa | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 38 | Q38L | cAa | cTa | 1 | 1 | AY.16 | 0.00038 |
ORF3a | 38 | Q38L | cAa | cTa | 1 | 1 | AY.19 | 0.00114 |
ORF3a | 38 | Q38K | Caa | Aaa | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 38 | Q38P | cAa | cCa | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 38 | Q38Q | caA | caG | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 38 | Q38X | Caa | Taa | 1 | 1 | AY.23.1 | 0.000417 |
ORF3a | 38 | Q38X | Caa | Taa | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 38 | Q38P | cAa | cCa | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 38 | Q38Q | caA | caG | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 38 | Q38Q | caA | caG | 1 | 1 | AY.27 | 0.000065 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | AY.28 | 0.00189 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 38 | Q38X | Caa | Taa | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 38 | Q38X | Caa | Taa | 1 | 1 | AY.29.1 | 0.000221 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | AY.29.1 | 0.000221 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | AY.29.1 | 0.000221 |
ORF3a | 38 | Q38K | Caa | Aaa | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 38 | Q38E | Caa | Gaa | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 38 | Q38X | Caa | Taa | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 38 | Q38P | cAa | cCa | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 38 | Q38E | Caa | Gaa | 1 | 1 | AY.3.1 | 0.000085 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 38 | Q38K | Caa | Aaa | 1 | 1 | AY.34.1 | 0.00051 |
ORF3a | 38 | Q38K | Caa | Aaa | 1 | 1 | AY.38 | 0.000499 |
ORF3a | 38 | Q38K | Caa | Aaa | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 38 | Q38X | Caa | Taa | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 38 | Q38Q | caA | caG | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 38 | Q38H | caA | caT | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 38 | Q38P | cAa | cCa | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 38 | Q38K | Caa | Aaa | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 38 | Q38H | caA | caC | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 38 | Q38E | Caa | Gaa | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 38 | Q38E | Caa | Gaa | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 38 | Q38K | Caa | Aaa | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 38 | Q38E | Caa | Gaa | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 38 | Q38H | caA | caC | 1 | 1 | AY.45 | 0.000122 |
ORF3a | 38 | Q38E | Caa | Gaa | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 38 | Q38X | Caa | Taa | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 38 | Q38L | cAa | cTa | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 38 | Q38X | Caa | Taa | 1 | 1 | AY.46.4 | 0.000165 |
ORF3a | 38 | Q38Q | caA | caG | 1 | 1 | AY.46.6 | 0.000072 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | AY.47 | 0.000031 |
ORF3a | 38 | Q38P | cAa | cCa | 1 | 1 | AY.5 | 0.000021 |
ORF3a | 38 | Q38L | cAa | cTa | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | AY.60 | 0.000938 |
ORF3a | 38 | Q38X | Caa | Taa | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 38 | Q38Q | caA | caG | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 38 | Q38L | cAa | cTa | 1 | 1 | AY.64 | 0.000595 |
ORF3a | 38 | Q38L | cAa | cTa | 1 | 1 | AY.65 | 0.000533 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | AY.65 | 0.000533 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | AY.7 | 0.000196 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF3a | 38 | Q38X | Caa | Taa | 1 | 1 | AY.79 | 0.001211 |
ORF3a | 38 | Q38Q | caA | caG | 1 | 1 | AY.82 | 0.001357 |
ORF3a | 38 | Q38H | caA | caT | 1 | 1 | AY.82 | 0.001357 |
ORF3a | 38 | Q38E | Caa | Gaa | 1 | 1 | AY.84 | 0.000437 |
ORF3a | 38 | Q38L | cAa | cTa | 1 | 1 | AY.85 | 0.000427 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | AY.9.2 | 0.000037 |
ORF3a | 38 | Q38K | Caa | Aaa | 1 | 1 | AY.9.2 | 0.000037 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | AY.90 | 0.000684 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | AY.91 | 0.00073 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | AY.93 | 0.000273 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | AY.99 | 0.001049 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 38 | Q38X | Caa | Taa | 1 | 1 | AZ.2 | 0.000821 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | B | 0.000128 |
ORF3a | 38 | Q38L | cAa | cTa | 1 | 1 | B | 0.000128 |
ORF3a | 38 | Q38del1 | Caa | -aa | 1 | 1 | B.1 | 0.000009 |
ORF3a | 38 | Q38E | Caa | Gaa | 1 | 1 | B.1 | 0.000009 |
ORF3a | 38 | Q38E | Caa | Gaa | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 38 | Q38X | Caa | Taa | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | B.1.1.1 | 0.000327 |
ORF3a | 38 | Q38L | cAa | cTa | 1 | 1 | B.1.1.139 | 0.022727 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | B.1.1.157 | 0.000913 |
ORF3a | 38 | Q38X | Caa | Taa | 1 | 1 | B.1.1.198 | 0.001468 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | B.1.1.200 | 0.007463 |
ORF3a | 38 | Q38K | Caa | Aaa | 1 | 1 | B.1.1.214 | 0.000055 |
ORF3a | 38 | Q38H | caA | caT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF3a | 38 | Q38K | Caa | Aaa | 1 | 1 | B.1.1.222 | 0.000204 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | B.1.1.222 | 0.000204 |
ORF3a | 38 | Q38L | cAa | cTa | 1 | 1 | B.1.1.222 | 0.000204 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | B.1.1.225 | 0.007194 |
ORF3a | 38 | Q38S | CAa | TCa | 1 | 1 | B.1.1.231 | 0.003096 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | B.1.1.277 | 0.000759 |
ORF3a | 38 | Q38K | Caa | Aaa | 1 | 1 | B.1.1.279 | 0.001121 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | B.1.1.28 | 0.000311 |
ORF3a | 38 | Q38L | cAa | cTa | 1 | 1 | B.1.1.284 | 0.000107 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | B.1.1.284 | 0.000107 |
ORF3a | 38 | Q38L | cAa | cTa | 1 | 1 | B.1.1.306 | 0.000438 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | B.1.1.351 | 0.002793 |
ORF3a | 38 | Q38X | Caa | Taa | 1 | 1 | B.1.1.39 | 0.00051 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | B.1.1.39 | 0.00051 |
ORF3a | 38 | Q38H | caA | caT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 38 | Q38Q | caA | caG | 1 | 1 | B.1.1.448 | 0.002033 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | B.1.1.462 | 0.008621 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | B.1.1.47 | 0.005348 |
ORF3a | 38 | Q38P | cAa | cCa | 1 | 1 | B.1.1.51 | 0.001718 |
ORF3a | 38 | Q38E | Caa | Gaa | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 38 | Q38Q | caA | caG | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 38 | Q38L | cAa | cTa | 1 | 1 | B.1.1.523 | 0.001563 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | B.1.1.523 | 0.001563 |
ORF3a | 38 | Q38L | cAa | cTa | 1 | 1 | B.1.1.63 | 0.000386 |
ORF3a | 38 | Q38K | Caa | Aaa | 1 | 1 | B.1.1.63 | 0.000386 |
ORF3a | 38 | Q38del1 | cAa | c-a | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | B.1.1.70 | 0.000341 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | B.1.1.83 | 0.00271 |
ORF3a | 38 | Q38L | cAa | cTa | 1 | 1 | B.1.1.99 | 0.02381 |
ORF3a | 38 | Q38X | Caa | Taa | 1 | 1 | B.1.126 | 0.001276 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 38 | Q38E | Caa | Gaa | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 38 | Q38H | caA | caC | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | B.1.177.17 | 0.000821 |
ORF3a | 38 | Q38L | cAa | cTa | 1 | 1 | B.1.177.21 | 0.000076 |
ORF3a | 38 | Q38X | Caa | Taa | 1 | 1 | B.1.177.21 | 0.000076 |
ORF3a | 38 | Q38X | Caa | Taa | 1 | 1 | B.1.177.31 | 0.011494 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | B.1.177.31 | 0.011494 |
ORF3a | 38 | Q38X | Caa | Taa | 1 | 1 | B.1.177.32 | 0.00135 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | B.1.177.44 | 0.000519 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | B.1.177.50 | 0.004695 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | B.1.177.6 | 0.000977 |
ORF3a | 38 | Q38X | Caa | Taa | 1 | 1 | B.1.177.6 | 0.000977 |
ORF3a | 38 | Q38K | Caa | Aaa | 1 | 1 | B.1.177.65 | 0.000665 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | B.1.177.7 | 0.000165 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | B.1.177.75 | 0.001041 |
ORF3a | 38 | Q38P | cAa | cCa | 1 | 1 | B.1.177.79 | 0.002342 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | B.1.177.81 | 0.000189 |
ORF3a | 38 | Q38X | Caa | Taa | 1 | 1 | B.1.206 | 0.000816 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | B.1.214.2 | 0.0006 |
ORF3a | 38 | Q38E | Caa | Gaa | 1 | 1 | B.1.214.3 | 0.007143 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 38 | Q38L | cAa | cTa | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 38 | Q38Q | caA | caG | 1 | 1 | B.1.235 | 0.002519 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | B.1.236 | 0.002053 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | B.1.240 | 0.000216 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | B.1.241 | 0.000812 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 38 | Q38Q | caA | caG | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 38 | Q38X | Caa | Taa | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 38 | Q38E | Caa | Gaa | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 38 | Q38P | cAa | cCa | 1 | 1 | B.1.280 | 0.007143 |
ORF3a | 38 | Q38X | Caa | Taa | 1 | 1 | B.1.351.2 | 0.000303 |
ORF3a | 38 | Q38P | cAa | cCa | 1 | 1 | B.1.36 | 0.000146 |
ORF3a | 38 | Q38L | cAa | cTa | 1 | 1 | B.1.36 | 0.000146 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | B.1.367 | 0.000792 |
ORF3a | 38 | Q38L | cAa | cTa | 1 | 1 | B.1.375 | 0.00082 |
ORF3a | 38 | Q38L | cAa | cTa | 1 | 1 | B.1.389 | 0.001002 |
ORF3a | 38 | Q38K | Caa | Aaa | 1 | 1 | B.1.427 | 0.00005 |
ORF3a | 38 | Q38X | Caa | Taa | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 38 | Q38H | caA | caC | 1 | 1 | B.1.470 | 0.001404 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | B.1.473 | 0.019231 |
ORF3a | 38 | Q38H | caA | caC | 1 | 1 | B.1.526 | 0.000024 |
ORF3a | 38 | Q38K | Caa | Aaa | 1 | 1 | B.1.558 | 0.004566 |
ORF3a | 38 | Q38H | caA | caC | 1 | 1 | B.1.564 | 0.000426 |
ORF3a | 38 | Q38K | Caa | Aaa | 1 | 1 | B.1.575 | 0.000303 |
ORF3a | 38 | Q38del1 | cAa | c-a | 1 | 1 | B.1.580 | 0.004065 |
ORF3a | 38 | Q38H | caA | caT | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 38 | Q38P | cAa | cCa | 1 | 1 | B.1.609 | 0.000479 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | B.1.609 | 0.000479 |
ORF3a | 38 | Q38Q | caA | caG | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 38 | Q38L | cAa | cTa | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | B.1.621 | 0.000089 |
ORF3a | 38 | Q38K | Caa | Aaa | 1 | 1 | B.1.628 | 0.000352 |
ORF3a | 38 | Q38L | cAa | cTa | 1 | 1 | B.1.628 | 0.000352 |
ORF3a | 38 | Q38H | caA | caC | 1 | 1 | B.1.630 | 0.005236 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | B.1.637 | 0.000073 |
ORF3a | 38 | Q38L | cAa | cTa | 1 | 1 | B.1.637 | 0.000073 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF3a | 38 | Q38X | Caa | Taa | 1 | 1 | B.58 | 0.010204 |
ORF3a | 38 | Q38L | cAa | cTa | 1 | 1 | B.6 | 0.00091 |
ORF3a | 38 | Q38X | Caa | Taa | 1 | 1 | B.6.6 | 0.000889 |
ORF3a | 38 | Q38Q | caA | caG | 1 | 1 | C.35 | 0.000774 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | C.35 | 0.000774 |
ORF3a | 38 | Q38Q | caA | caG | 1 | 1 | D.2 | 0.000075 |
ORF3a | 38 | Q38K | Caa | Aaa | 1 | 1 | P.1 | 0.000016 |
ORF3a | 38 | Q38X | Caa | Taa | 1 | 1 | P.1 | 0.000016 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | P.1 | 0.000016 |
ORF3a | 38 | Q38H | caA | caT | 1 | 1 | P.1 | 0.000016 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | P.1.10 | 0.000269 |
ORF3a | 38 | Q38Q | caA | caG | 1 | 1 | P.1.10 | 0.000269 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | P.1.12 | 0.000484 |
ORF3a | 38 | Q38X | Caa | Taa | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 38 | Q38del | CAA | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 38 | Q38Q | caA | caG | 1 | 1 | P.1.2 | 0.001156 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | P.1.7 | 0.000319 |
ORF3a | 38 | Q38L | cAa | cTa | 1 | 1 | P.1.7 | 0.000319 |
ORF3a | 38 | Q38H | caA | caC | 1 | 1 | P.4 | 0.003802 |
ORF3a | 38 | Q38L | cAa | cTa | 1 | 1 | Q.4 | 0.000455 |
ORF3a | 38 | Q38R | cAa | cGa | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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