CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 34 & Codon = acT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a34T34TsynacGacT1106296660.87380225492-25494

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a34T34TacGacT966611062All0.001849
ORF3a34T34TacGacT12101443B.1.1.70.001083
ORF3a34T34TacGacT13791380B.1.2580.091768
ORF3a34T34TacGacT10481272AY.40.001631
ORF3a34T34TacGacT9841079B.1.617.20.003705
ORF3a34T34TacGacT697698B.1.36.160.992877
ORF3a34T34TacGacT523523B.1.258.71
ORF3a34T34TacGacT409440AY.430.001812
ORF3a34T34TacGacT256257AY.130.041211
ORF3a34T34TacGacT188248AY.440.001144
ORF3a34T34TacGacT202237B.10.00185
ORF3a34T34TacGacT171180AY.250.001029
ORF3a34T34TacGacT114133AY.1020.003023
ORF3a34T34TacGacT92130B.1.20.00081
ORF3a34T34TacGacT50121AY.30.000497
ORF3a34T34TacGacT111111B.1.4270.005605
ORF3a34T34TacGacT76100AY.1030.000472
ORF3a34T34TacGacT6695P.10.00104
ORF3a34T34TacGacT8080AY.46.40.01316
ORF3a34T34TacGacT7177B.1.1770.000935
ORF3a34T34TacGacT6969C.350.053406
ORF3a34T34TacGacT5167AY.50.001053
ORF3a34T34TacGacT6262AY.5.40.017156
ORF3a34T34TacGacT5160B.1.10.000925
ORF3a34T34TacGacT5360B.1.1.5190.002105
ORF3a34T34TacGacT5758AY.460.005933
ORF3a34T34TacGacT557Q.10.000632
ORF3a34T34TacGacT4353AY.390.001063
ORF3a34T34TacGacT5151B.1.5770.035052
ORF3a34T34TacGacT4949B.1.258.60.960784
ORF3a34T34TacGacT447C.360.003643
ORF3a34T34TacGacT4044AY.260.001132
ORF3a34T34TacGacT1444P.1.140.000669
ORF3a34T34TacGacT4343B.1.617.10.005546
ORF3a34T34TacGacT4141B.1.1160.476744
ORF3a34T34TacGacT3037AY.98.10.001453
ORF3a34T34TacGacT3636B.1.2210.002557
ORF3a34T34TacGacT3435B.1.4290.0008
ORF3a34T34TacGacT3434AY.140.002992
ORF3a34T34TacGacT3133AY.1170.00262
ORF3a34T34TacGacT3132AY.750.001737
ORF3a34T34TacGacT2831AY.1130.003987
ORF3a34T34TacGacT3131B.1.1460.131356
ORF3a34T34TacGacT2731B.1.1600.000842
ORF3a34T34TacGacT430B.1.5960.000349
ORF3a34T34TacGacT2829B.1.177.810.005301
ORF3a34T34TacGacT2528AY.200.000972
ORF3a34T34TacGacT2528B.1.1.330.010522
ORF3a34T34TacGacT2727AY.10.010685
ORF3a34T34TacGacT2425AY.420.000966
ORF3a34T34TacGacT2123AY.60.000864
ORF3a34T34TacGacT2222A.270.036424
ORF3a34T34TacGacT322B.1.360.000438
ORF3a34T34TacGacT1721B.1.6210.001505
ORF3a34T34TacGacT1620AY.1000.000736
ORF3a34T34TacGacT1820B.1.1.2220.003672
ORF3a34T34TacGacT1620B.1.5260.000376
ORF3a34T34TacGacT1119AY.330.000735
ORF3a34T34TacGacT1919B.1.1.2690.02571
ORF3a34T34TacGacT1818AY.860.014938
ORF3a34T34TacGacT1718B.1.466.20.006651
ORF3a34T34TacGacT1417B.1.3510.000416
ORF3a34T34TacGacT1717B.1.36.10.019384
ORF3a34T34TacGacT516AY.290.000079
ORF3a34T34TacGacT1616AY.380.007988
ORF3a34T34TacGacT1515AY.4.20.000325
ORF3a34T34TacGacT1414AY.1200.000521
ORF3a34T34TacGacT1214AY.980.000948
ORF3a34T34TacGacT1213AY.1190.000424
ORF3a34T34TacGacT1313AY.410.003821
ORF3a34T34TacGacT713AY.470.000218
ORF3a34T34TacGacT1313AY.90.000879
ORF3a34T34TacGacT1113B.1.1.2140.00061
ORF3a34T34TacGacT513B.1.2430.000348
ORF3a34T34TacGacT1313B.1.2740.154762
ORF3a34T34TacGacT1112C.370.001277
ORF3a34T34TacGacT1111B.1.4000.004719
ORF3a34T34TacGacT1010AY.1210.001353
ORF3a34T34TacGacT910B0.00115
ORF3a34T34TacGacT1010B.1.258.181
ORF3a34T34TacGacT99AY.100.004769
ORF3a34T34TacGacT99B.1.3960.006351
ORF3a34T34TacGacT99B.400.003279
ORF3a34T34TacGacT48AY.230.000279
ORF3a34T34TacGacT78AY.450.000852
ORF3a34T34TacGacT88AY.610.000838
ORF3a34T34TacGacT88AY.990.008395
ORF3a34T34TacGacT77AY.1060.002344
ORF3a34T34TacGacT67AY.1180.000376
ORF3a34T34TacGacT77AY.160.002658
ORF3a34T34TacGacT77AY.740.00081
ORF3a34T34TacGacT47AY.99.20.000369
ORF3a34T34TacGacT67B.1.1.2160.005343
ORF3a34T34TacGacT77B.1.1.390.003568
ORF3a34T34TacGacT57B.1.351.20.001513
ORF3a34T34TacGacT77B.1.3670.005547
ORF3a34T34TacGacT77B.1.5010.051471
ORF3a34T34TacGacT77B.1.5400.067961
ORF3a34T34TacGacT77P.1.120.003388
ORF3a34T34TacGacT56AY.300.001979
ORF3a34T34TacGacT66AY.34.10.00306
ORF3a34T34TacGacT56AY.540.000477
ORF3a34T34TacGacT66AY.9.10.000502
ORF3a34T34TacGacT56AY.9.20.000184
ORF3a34T34TacGacT66AY.950.004566
ORF3a34T34TacGacT66B.1.1.280.001867
ORF3a34T34TacGacT66B.1.1.3510.01676
ORF3a34T34TacGacT66B.1.177.600.001311
ORF3a34T34TacGacT66B.1.5250.000679
ORF3a34T34TacGacT55A.23.10.003521
ORF3a34T34TacGacT55AY.120.00158
ORF3a34T34TacGacT55AY.46.60.000361
ORF3a34T34TacGacT55B.1.1.270.028249
ORF3a34T34TacGacT25B.1.1.3110.000716
ORF3a34T34TacGacT55B.1.1.3180.001509
ORF3a34T34TacGacT55B.1.1.3590.138889
ORF3a34T34TacGacT55B.1.1.770.208333
ORF3a34T34TacGacT55B.1.2400.001078
ORF3a34T34TacGacT55B.1.36.80.005
ORF3a34T34TacGacT15B.1.438.10.000107
ORF3a34T34TacGacT55B.1.5170.002135
ORF3a34T34TacGacT55D.20.000375
ORF3a34T34TacGacT55P.20.000933
ORF3a34T34TacGacT44A.2.50.001996
ORF3a34T34TacGacT44AY.4.40.001637
ORF3a34T34TacGacT44AY.75.10.000721
ORF3a34T34TacGacT44AY.880.003537
ORF3a34T34TacGacT44B.1.1.1590.018692
ORF3a34T34TacGacT44B.1.1.3170.001647
ORF3a34T34TacGacT44B.1.1.3720.002755
ORF3a34T34TacGacT34B.1.1.630.001157
ORF3a34T34TacGacT44B.1.160.160.003717
ORF3a34T34TacGacT44B.1.177.150.002524
ORF3a34T34TacGacT44B.1.36.170.001976
ORF3a34T34TacGacT34P.1.10.000953
ORF3a34T34TacGacT44P.1.150.000929
ORF3a34T34TacGacT33A.10.000846
ORF3a34T34TacGacT33AD.20.000657
ORF3a34T34TacGacT23AY.1080.002205
ORF3a34T34TacGacT23AY.1110.000366
ORF3a34T34TacGacT23AY.29.10.000441
ORF3a34T34TacGacT33AY.3.10.000256
ORF3a34T34TacGacT33AY.360.000445
ORF3a34T34TacGacT33AY.530.000863
ORF3a34T34TacGacT33AY.580.002722
ORF3a34T34TacGacT33AY.690.00056
ORF3a34T34TacGacT33AY.9.2.10.005929
ORF3a34T34TacGacT13AY.910.00073
ORF3a34T34TacGacT13B.1.1.10.000327
ORF3a34T34TacGacT33B.1.1.1890.004539
ORF3a34T34TacGacT33B.1.1.3680.009259
ORF3a34T34TacGacT33B.1.1.4200.003018
ORF3a34T34TacGacT33B.1.177.170.002463
ORF3a34T34TacGacT33B.1.2410.002435
ORF3a34T34TacGacT33B.1.258.110.001189
ORF3a34T34TacGacT13B.1.258.170.000104
ORF3a34T34TacGacT33B.1.3460.003932
ORF3a34T34TacGacT33B.1.36.290.001552
ORF3a34T34TacGacT33B.1.4160.003807
ORF3a34T34TacGacT33B.1.4780.035294
ORF3a34T34TacGacT33B.1.4990.003151
ORF3a34T34TacGacT33B.1.6090.001438
ORF3a34T34TacGacT33R.10.00027
ORF3a34T34TacGacT12AY.1090.00074
ORF3a34T34TacGacT22AY.270.000129
ORF3a34T34TacGacT22AY.4.30.001684
ORF3a34T34TacGacT22AY.46.10.002053
ORF3a34T34TacGacT22AY.620.000871
ORF3a34T34TacGacT22AY.650.001066
ORF3a34T34TacGacT12AY.780.001541
ORF3a34T34TacGacT22AY.850.000854
ORF3a34T34TacGacT22AY.890.009804
ORF3a34T34TacGacT22AY.920.000575
ORF3a34T34TacGacT22AY.960.004149
ORF3a34T34TacGacT22B.1.1.1440.057143
ORF3a34T34TacGacT22B.1.1.2050.007435
ORF3a34T34TacGacT22B.1.1.250.001137
ORF3a34T34TacGacT22B.1.1.2840.000215
ORF3a34T34TacGacT12B.1.1.2910.000742
ORF3a34T34TacGacT22B.1.1.3870.117647
ORF3a34T34TacGacT22B.1.1.4090.005666
ORF3a34T34TacGacT22B.1.1.4350.068966
ORF3a34T34TacGacT22B.1.1180.013423
ORF3a34T34TacGacT22B.1.1280.001271
ORF3a34T34TacGacT22B.1.1570.00597
ORF3a34T34TacGacT22B.1.177.440.001038
ORF3a34T34TacGacT22B.1.177.730.001133
ORF3a34T34TacGacT22B.1.177.870.001456
ORF3a34T34TacGacT22B.1.2120.033333
ORF3a34T34TacGacT22B.1.258.30.00335
ORF3a34T34TacGacT22B.1.3710.002245
ORF3a34T34TacGacT12B.1.4970.000315
ORF3a34T34TacGacT12B.1.6280.000352
ORF3a34T34TacGacT22C.36.30.001134
ORF3a34T34TacGacT22N.50.003534
ORF3a34T34TacGacT11A0.000387
ORF3a34T34TacGacT11A.250.018182
ORF3a34T34TacGacT11AY.1050.000643
ORF3a34T34TacGacT11AY.1070.000466
ORF3a34T34TacGacT11AY.110.001339
ORF3a34T34TacGacT11AY.1160.000287
ORF3a34T34TacGacT11AY.16.10.00047
ORF3a34T34TacGacT11AY.46.20.000635
ORF3a34T34TacGacT11AY.46.30.000934
ORF3a34T34TacGacT11AY.480.000465
ORF3a34T34TacGacT11AY.550.000917
ORF3a34T34TacGacT11AY.590.00053
ORF3a34T34TacGacT11AY.700.000209
ORF3a34T34TacGacT11AY.770.001127
ORF3a34T34TacGacT11AY.970.001701
ORF3a34T34TacGacT11AZ.40.003356
ORF3a34T34TacGacT11B.1.1.2740.005051
ORF3a34T34TacGacT11B.1.1.3060.000438
ORF3a34T34TacGacT11B.1.1.3160.000925
ORF3a34T34TacGacT11B.1.1.3620.005618
ORF3a34T34TacGacT11B.1.1.370.000193
ORF3a34T34TacGacT11B.1.1.4340.000349
ORF3a34T34TacGacT11B.1.1.5210.005348
ORF3a34T34TacGacT11B.1.1150.021739
ORF3a34T34TacGacT11B.1.160.250.011111
ORF3a34T34TacGacT11B.1.177.190.001431
ORF3a34T34TacGacT11B.1.177.70.000165
ORF3a34T34TacGacT11B.1.1920.009259
ORF3a34T34TacGacT11B.1.2060.000816
ORF3a34T34TacGacT11B.1.2220.001692
ORF3a34T34TacGacT11B.1.2320.000537
ORF3a34T34TacGacT11B.1.258.140.00098
ORF3a34T34TacGacT11B.1.258.240.010753
ORF3a34T34TacGacT11B.1.36.100.004785
ORF3a34T34TacGacT11B.1.36.220.001208
ORF3a34T34TacGacT11B.1.3690.000285
ORF3a34T34TacGacT11B.1.3890.001002
ORF3a34T34TacGacT11B.1.3990.001934
ORF3a34T34TacGacT11B.1.4310.04
ORF3a34T34TacGacT11B.1.4320.011236
ORF3a34T34TacGacT11B.1.4480.002625
ORF3a34T34TacGacT11B.1.4590.004082
ORF3a34T34TacGacT11B.1.4620.007246
ORF3a34T34TacGacT11B.1.466.10.007194
ORF3a34T34TacGacT11B.1.4700.001404
ORF3a34T34TacGacT11B.1.4740.001901
ORF3a34T34TacGacT11B.1.5230.002451
ORF3a34T34TacGacT11B.1.5560.007519
ORF3a34T34TacGacT11B.1.5580.004566
ORF3a34T34TacGacT11B.1.5610.000397
ORF3a34T34TacGacT11B.1.5640.000426
ORF3a34T34TacGacT11B.1.5750.000303
ORF3a34T34TacGacT11B.1.5820.000491
ORF3a34T34TacGacT11B.1.6190.000871
ORF3a34T34TacGacT11B.1.619.10.000641
ORF3a34T34TacGacT11B.150.017544
ORF3a34T34TacGacT11B.6.60.000889
ORF3a34T34TacGacT11B.610.005747
ORF3a34T34TacGacT11C.1.10.076923
ORF3a34T34TacGacT11L.30.003546
ORF3a34T34TacGacT11N.60.007092
ORF3a34T34TacGacT11P.1.170.000162
ORF3a34T34TacGacT11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.