CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 34 & Codon = aTg

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a34T34MnonsynaCgaTg16641664125492-25494

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a34T34MaCgaTg16641664All0.000318
ORF3a34T34MaCgaTg314314B.1.1.70.000281
ORF3a34T34MaCgaTg234234AY.40.000364
ORF3a34T34MaCgaTg212212B.1.2580.014108
ORF3a34T34MaCgaTg7878B.10.000714
ORF3a34T34MaCgaTg5858AY.430.000257
ORF3a34T34MaCgaTg5656B.1.617.20.000211
ORF3a34T34MaCgaTg5555AY.1030.000341
ORF3a34T34MaCgaTg3838AY.440.000231
ORF3a34T34MaCgaTg3636P.10.000567
ORF3a34T34MaCgaTg3232B.1.1770.000421
ORF3a34T34MaCgaTg3131AY.1020.000822
ORF3a34T34MaCgaTg2828B.1.1700.12069
ORF3a34T34MaCgaTg2626B.1.2210.001847
ORF3a34T34MaCgaTg2525B.1.5260.000588
ORF3a34T34MaCgaTg2222B.1.20.000194
ORF3a34T34MaCgaTg2020AY.470.000622
ORF3a34T34MaCgaTg1919AY.30.000189
ORF3a34T34MaCgaTg1818AY.250.000108
ORF3a34T34MaCgaTg1616AY.1190.000565
ORF3a34T34MaCgaTg1616B.1.2340.002111
ORF3a34T34MaCgaTg1414B.1.177.70.002308
ORF3a34T34MaCgaTg1414B.1.177.750.014568
ORF3a34T34MaCgaTg1212B.1.5960.001046
ORF3a34T34MaCgaTg1111B.1.1.390.005607
ORF3a34T34MaCgaTg99AY.290.000142
ORF3a34T34MaCgaTg99B.1.6040.155172
ORF3a34T34MaCgaTg88AY.200.000311
ORF3a34T34MaCgaTg88B.1.10.000145
ORF3a34T34MaCgaTg77A.23.10.00493
ORF3a34T34MaCgaTg77B.1.1600.000218
ORF3a34T34MaCgaTg66AY.1130.000854
ORF3a34T34MaCgaTg66AY.9.20.00022
ORF3a34T34MaCgaTg66AY.99.20.000553
ORF3a34T34MaCgaTg66B.1.3510.000178
ORF3a34T34MaCgaTg66P.1.140.000287
ORF3a34T34MaCgaTg55AY.390.000124
ORF3a34T34MaCgaTg55B.1.177.810.000947
ORF3a34T34MaCgaTg55B.1.5820.002453
ORF3a34T34MaCgaTg44A0.001548
ORF3a34T34MaCgaTg44AY.230.000279
ORF3a34T34MaCgaTg44AY.260.000113
ORF3a34T34MaCgaTg44AY.330.000267
ORF3a34T34MaCgaTg44AY.4.20.000087
ORF3a34T34MaCgaTg44AY.690.000747
ORF3a34T34MaCgaTg44B.1.1.4320.005063
ORF3a34T34MaCgaTg44B.1.2390.004884
ORF3a34T34MaCgaTg44B.1.3460.005242
ORF3a34T34MaCgaTg44B.1.466.20.001565
ORF3a34T34MaCgaTg44B.1.6210.000354
ORF3a34T34MaCgaTg44C.360.003643
ORF3a34T34MaCgaTg44R.10.00036
ORF3a34T34MaCgaTg33AY.1000.000138
ORF3a34T34MaCgaTg33AY.1110.000549
ORF3a34T34MaCgaTg33AY.116.10.000934
ORF3a34T34MaCgaTg33AY.1170.000254
ORF3a34T34MaCgaTg33AY.1210.000406
ORF3a34T34MaCgaTg33AY.570.001969
ORF3a34T34MaCgaTg33AY.60.000123
ORF3a34T34MaCgaTg33AY.610.000314
ORF3a34T34MaCgaTg33AY.750.000168
ORF3a34T34MaCgaTg33B.1.1.3890.018182
ORF3a34T34MaCgaTg33B.1.360.000438
ORF3a34T34MaCgaTg33B.1.3690.000856
ORF3a34T34MaCgaTg33B.1.438.10.000322
ORF3a34T34MaCgaTg33B.1.5170.001281
ORF3a34T34MaCgaTg33C.230.017442
ORF3a34T34MaCgaTg33Q.40.001364
ORF3a34T34MaCgaTg22AY.120.000632
ORF3a34T34MaCgaTg22AY.130.000322
ORF3a34T34MaCgaTg22AY.340.000194
ORF3a34T34MaCgaTg22AY.420.00008
ORF3a34T34MaCgaTg22AY.46.40.000329
ORF3a34T34MaCgaTg22AY.5.30.000675
ORF3a34T34MaCgaTg22AY.730.001331
ORF3a34T34MaCgaTg22AY.9.10.000167
ORF3a34T34MaCgaTg22B.1.1.2140.000111
ORF3a34T34MaCgaTg22B.1.1.4340.000697
ORF3a34T34MaCgaTg22B.1.1.5190.000079
ORF3a34T34MaCgaTg22B.1.177.100.001756
ORF3a34T34MaCgaTg22B.1.177.170.001642
ORF3a34T34MaCgaTg22B.1.258.170.000208
ORF3a34T34MaCgaTg22B.1.2890.005319
ORF3a34T34MaCgaTg22B.1.5010.014706
ORF3a34T34MaCgaTg22B.1.6350.035088
ORF3a34T34MaCgaTg22C.1.20.008511
ORF3a34T34MaCgaTg22C.370.000232
ORF3a34T34MaCgaTg22P.1.170.000324
ORF3a34T34MaCgaTg22Q.10.000253
ORF3a34T34MaCgaTg22Q.80.00033
ORF3a34T34MaCgaTg11A.270.001656
ORF3a34T34MaCgaTg11AY.1060.000335
ORF3a34T34MaCgaTg11AY.1200.000037
ORF3a34T34MaCgaTg11AY.120.10.000321
ORF3a34T34MaCgaTg11AY.160.00038
ORF3a34T34MaCgaTg11AY.23.10.000417
ORF3a34T34MaCgaTg11AY.280.00189
ORF3a34T34MaCgaTg11AY.300.000396
ORF3a34T34MaCgaTg11AY.39.10.00004
ORF3a34T34MaCgaTg11AY.4.50.000107
ORF3a34T34MaCgaTg11AY.460.000104
ORF3a34T34MaCgaTg11AY.480.000465
ORF3a34T34MaCgaTg11AY.50.000021
ORF3a34T34MaCgaTg11AY.5.40.000277
ORF3a34T34MaCgaTg11AY.530.000288
ORF3a34T34MaCgaTg11AY.540.000095
ORF3a34T34MaCgaTg11AY.75.10.00018
ORF3a34T34MaCgaTg11AY.90.000068
ORF3a34T34MaCgaTg11AY.980.000079
ORF3a34T34MaCgaTg11B0.000128
ORF3a34T34MaCgaTg11B.1.1.1170.009709
ORF3a34T34MaCgaTg11B.1.1.2160.00089
ORF3a34T34MaCgaTg11B.1.1.460.004367
ORF3a34T34MaCgaTg11B.1.160.260.002421
ORF3a34T34MaCgaTg11B.1.177.120.000152
ORF3a34T34MaCgaTg11B.1.177.40.000211
ORF3a34T34MaCgaTg11B.1.177.580.001332
ORF3a34T34MaCgaTg11B.1.177.600.000218
ORF3a34T34MaCgaTg11B.1.177.730.000566
ORF3a34T34MaCgaTg11B.1.214.20.0006
ORF3a34T34MaCgaTg11B.1.351.50.0006
ORF3a34T34MaCgaTg11B.1.3670.000792
ORF3a34T34MaCgaTg11B.1.3750.00082
ORF3a34T34MaCgaTg11B.1.4560.003268
ORF3a34T34MaCgaTg11B.1.5160.001957
ORF3a34T34MaCgaTg11B.1.617.10.000129
ORF3a34T34MaCgaTg11B.1.6370.000073
ORF3a34T34MaCgaTg11B.6.30.026316
ORF3a34T34MaCgaTg11N.90.005952
ORF3a34T34MaCgaTg11P.1.120.000484
ORF3a34T34MaCgaTg11P.1.150.000232
ORF3a34T34MaCgaTg11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.