CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 34

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a34T34TsynacGacT1106296660.87380225492-25494
ORF3a34T34TsynacGacA1106211270.1018825492-25494
ORF3a34T34TsynacGacC110622690.024317525492-25494
ORF3a34T34MnonsynaCgaTg16641664125492-25494
ORF3a34T34AnonsynAcgGcg5865840.99658725492-25494
ORF3a34T34AnonsynAcGGcA58620.0034129725492-25494
ORF3a34T34deldelACG---156156125492-25494
ORF3a34T34KnonsynaCgaAg56530.94642925492-25494
ORF3a34T34KnonsynaCGaAA5630.053571425492-25494
ORF3a34T34SnonsynAcgTcg47430.91489425492-25494
ORF3a34T34SnonsynaCGaGC4720.042553225492-25494
ORF3a34T34SnonsynaCGaGT4720.042553225492-25494
ORF3a34T34PnonsynAcgCcg3030125492-25494
ORF3a34T34RnonsynaCgaGg44125492-25494
ORF3a34T34NnonsynaCGaAC11125492-25494
ORF3a34T34InonsynaCGaTA11125492-25494

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a34T34TacGacT966611062All0.001849
ORF3a34T34TacGacA112711062All0.000216
ORF3a34T34TacGacC26911062All0.000051
ORF3a34T34MaCgaTg16641664All0.000318
ORF3a34T34TacGacT12101443B.1.1.70.001083
ORF3a34T34TacGacA1931443B.1.1.70.000173
ORF3a34T34TacGacC401443B.1.1.70.000036
ORF3a34T34TacGacT13791380B.1.2580.091768
ORF3a34T34TacGacA11380B.1.2580.000067
ORF3a34T34TacGacT10481272AY.40.001631
ORF3a34T34TacGacA2081272AY.40.000324
ORF3a34T34TacGacC161272AY.40.000025
ORF3a34T34TacGacT9841079B.1.617.20.003705
ORF3a34T34TacGacA751079B.1.617.20.000282
ORF3a34T34TacGacC201079B.1.617.20.000075
ORF3a34T34TacGacT697698B.1.36.160.992877
ORF3a34T34TacGacC1698B.1.36.160.001425
ORF3a34T34AAcgGcg584586All0.000112
ORF3a34T34AAcGGcA2586All0
ORF3a34T34TacGacT523523B.1.258.71
ORF3a34T34TacGacT409440AY.430.001812
ORF3a34T34TacGacA29440AY.430.000128
ORF3a34T34TacGacC2440AY.430.000009
ORF3a34T34MaCgaTg314314B.1.1.70.000281
ORF3a34T34AAcgGcg294294AY.430.001303
ORF3a34T34TacGacT256257AY.130.041211
ORF3a34T34TacGacA1257AY.130.000161
ORF3a34T34TacGacT188248AY.440.001144
ORF3a34T34TacGacA56248AY.440.000341
ORF3a34T34TacGacC4248AY.440.000024
ORF3a34T34TacGacT202237B.10.00185
ORF3a34T34TacGacA30237B.10.000275
ORF3a34T34TacGacC5237B.10.000046
ORF3a34T34MaCgaTg234234AY.40.000364
ORF3a34T34MaCgaTg212212B.1.2580.014108
ORF3a34T34TacGacT171180AY.250.001029
ORF3a34T34TacGacA9180AY.250.000054
ORF3a34T34delACG---156156All0.00003
ORF3a34T34TacGacT114133AY.1020.003023
ORF3a34T34TacGacA16133AY.1020.000424
ORF3a34T34TacGacC3133AY.1020.00008
ORF3a34T34TacGacT92130B.1.20.00081
ORF3a34T34TacGacA36130B.1.20.000317
ORF3a34T34TacGacC2130B.1.20.000018
ORF3a34T34TacGacA68121AY.30.000676
ORF3a34T34TacGacT50121AY.30.000497
ORF3a34T34TacGacC3121AY.30.00003
ORF3a34T34TacGacT111111B.1.4270.005605
ORF3a34T34TacGacT76100AY.1030.000472
ORF3a34T34TacGacA18100AY.1030.000112
ORF3a34T34TacGacC6100AY.1030.000037
ORF3a34T34TacGacT6695P.10.00104
ORF3a34T34TacGacA1595P.10.000236
ORF3a34T34TacGacC1495P.10.000221
ORF3a34T34TacGacT8080AY.46.40.01316
ORF3a34T34AAcgGcg8080B.1.1.700.027285
ORF3a34T34MaCgaTg7878B.10.000714
ORF3a34T34TacGacT7177B.1.1770.000935
ORF3a34T34TacGacA577B.1.1770.000066
ORF3a34T34TacGacC177B.1.1770.000013
ORF3a34T34TacGacT6969C.350.053406
ORF3a34T34TacGacT5167AY.50.001053
ORF3a34T34TacGacA1667AY.50.00033
ORF3a34T34AAcgGcg6767B.1.1.70.00006
ORF3a34T34TacGacT6262AY.5.40.017156
ORF3a34T34TacGacT5160B.1.10.000925
ORF3a34T34TacGacA660B.1.10.000109
ORF3a34T34TacGacC360B.1.10.000054
ORF3a34T34TacGacT5360B.1.1.5190.002105
ORF3a34T34TacGacA760B.1.1.5190.000278
ORF3a34T34MaCgaTg5858AY.430.000257
ORF3a34T34TacGacT5758AY.460.005933
ORF3a34T34TacGacA158AY.460.000104
ORF3a34T34TacGacA5257Q.10.006569
ORF3a34T34TacGacT557Q.10.000632
ORF3a34T34KaCgaAg5356All0.00001
ORF3a34T34KaCGaAA356All0.000001
ORF3a34T34TacGacC5656AY.4.50.00602
ORF3a34T34MaCgaTg5656B.1.617.20.000211
ORF3a34T34MaCgaTg5555AY.1030.000341
ORF3a34T34TacGacT4353AY.390.001063
ORF3a34T34TacGacA953AY.390.000222
ORF3a34T34TacGacC153AY.390.000025
ORF3a34T34TacGacT5151B.1.5770.035052
ORF3a34T34TacGacT4949B.1.258.60.960784
ORF3a34T34SAcgTcg4347All0.000008
ORF3a34T34SaCGaGC247All0
ORF3a34T34SaCGaGT247All0
ORF3a34T34TacGacA4347C.360.039162
ORF3a34T34TacGacT447C.360.003643
ORF3a34T34TacGacC4545B.1.351.30.039439
ORF3a34T34TacGacT4044AY.260.001132
ORF3a34T34TacGacA344AY.260.000085
ORF3a34T34TacGacC144AY.260.000028
ORF3a34T34TacGacA3044P.1.140.001434
ORF3a34T34TacGacT1444P.1.140.000669
ORF3a34T34TacGacT4343B.1.617.10.005546
ORF3a34T34TacGacT4141B.1.1160.476744
ORF3a34T34MaCgaTg3838AY.440.000231
ORF3a34T34TacGacT3037AY.98.10.001453
ORF3a34T34TacGacA737AY.98.10.000339
ORF3a34T34TacGacT3636B.1.2210.002557
ORF3a34T34MaCgaTg3636P.10.000567
ORF3a34T34TacGacT3435B.1.4290.0008
ORF3a34T34TacGacC135B.1.4290.000024
ORF3a34T34TacGacT3434AY.140.002992
ORF3a34T34delACG---3434B.1.1.70.00003
ORF3a34T34TacGacT3133AY.1170.00262
ORF3a34T34TacGacC133AY.1170.000085
ORF3a34T34TacGacA133AY.1170.000085
ORF3a34T34TacGacT3132AY.750.001737
ORF3a34T34TacGacC132AY.750.000056
ORF3a34T34MaCgaTg3232B.1.1770.000421
ORF3a34T34MaCgaTg3131AY.1020.000822
ORF3a34T34TacGacT2831AY.1130.003987
ORF3a34T34TacGacC231AY.1130.000285
ORF3a34T34TacGacA131AY.1130.000142
ORF3a34T34TacGacT3131B.1.1460.131356
ORF3a34T34TacGacT2731B.1.1600.000842
ORF3a34T34TacGacA331B.1.1600.000094
ORF3a34T34TacGacC131B.1.1600.000031
ORF3a34T34PAcgCcg3030All0.000006
ORF3a34T34TacGacA2530B.1.5960.002178
ORF3a34T34TacGacT430B.1.5960.000349
ORF3a34T34TacGacC130B.1.5960.000087
ORF3a34T34TacGacT2829B.1.177.810.005301
ORF3a34T34TacGacA129B.1.177.810.000189
ORF3a34T34TacGacT2528AY.200.000972
ORF3a34T34TacGacA328AY.200.000117
ORF3a34T34TacGacT2528B.1.1.330.010522
ORF3a34T34TacGacA328B.1.1.330.001263
ORF3a34T34MaCgaTg2828B.1.1700.12069
ORF3a34T34TacGacT2727AY.10.010685
ORF3a34T34MaCgaTg2626B.1.2210.001847
ORF3a34T34TacGacT2425AY.420.000966
ORF3a34T34TacGacA125AY.420.00004
ORF3a34T34MaCgaTg2525B.1.5260.000588
ORF3a34T34TacGacT2123AY.60.000864
ORF3a34T34TacGacA223AY.60.000082
ORF3a34T34TacGacT2222A.270.036424
ORF3a34T34delACG---2222B.1.10.000399
ORF3a34T34AAcgGcg2222B.1.10.000399
ORF3a34T34MaCgaTg2222B.1.20.000194
ORF3a34T34TacGacA1522B.1.360.002189
ORF3a34T34TacGacC422B.1.360.000584
ORF3a34T34TacGacT322B.1.360.000438
ORF3a34T34TacGacT1721B.1.6210.001505
ORF3a34T34TacGacA421B.1.6210.000354
ORF3a34T34SAcgTcg2121C.350.016254
ORF3a34T34TacGacT1620AY.1000.000736
ORF3a34T34TacGacC420AY.1000.000184
ORF3a34T34AAcgGcg2020AY.40.000031
ORF3a34T34MaCgaTg2020AY.470.000622
ORF3a34T34TacGacT1820B.1.1.2220.003672
ORF3a34T34TacGacC220B.1.1.2220.000408
ORF3a34T34TacGacT1620B.1.5260.000376
ORF3a34T34TacGacA420B.1.5260.000094
ORF3a34T34MaCgaTg1919AY.30.000189
ORF3a34T34TacGacT1119AY.330.000735
ORF3a34T34TacGacA819AY.330.000534
ORF3a34T34TacGacT1919B.1.1.2690.02571
ORF3a34T34MaCgaTg1818AY.250.000108
ORF3a34T34TacGacT1818AY.860.014938
ORF3a34T34TacGacT1718B.1.466.20.006651
ORF3a34T34TacGacA118B.1.466.20.000391
ORF3a34T34TacGacT1417B.1.3510.000416
ORF3a34T34TacGacA217B.1.3510.000059
ORF3a34T34TacGacC117B.1.3510.00003
ORF3a34T34TacGacT1717B.1.36.10.019384
ORF3a34T34MaCgaTg1616AY.1190.000565
ORF3a34T34TacGacA1116AY.290.000174
ORF3a34T34TacGacT516AY.290.000079
ORF3a34T34TacGacT1616AY.380.007988
ORF3a34T34delACG---1616AY.430.000071
ORF3a34T34MaCgaTg1616B.1.2340.002111
ORF3a34T34TacGacT1515AY.4.20.000325
ORF3a34T34TacGacT1414AY.1200.000521
ORF3a34T34TacGacT1214AY.980.000948
ORF3a34T34TacGacA114AY.980.000079
ORF3a34T34TacGacC114AY.980.000079
ORF3a34T34MaCgaTg1414B.1.177.70.002308
ORF3a34T34MaCgaTg1414B.1.177.750.014568
ORF3a34T34AAcgGcg1313AD.20.002847
ORF3a34T34TacGacT1213AY.1190.000424
ORF3a34T34TacGacC113AY.1190.000035
ORF3a34T34TacGacT1313AY.410.003821
ORF3a34T34TacGacT713AY.470.000218
ORF3a34T34TacGacA613AY.470.000187
ORF3a34T34TacGacT1313AY.90.000879
ORF3a34T34TacGacC1313B.1.1.1690.236364
ORF3a34T34TacGacT1113B.1.1.2140.00061
ORF3a34T34TacGacA213B.1.1.2140.000111
ORF3a34T34TacGacA813B.1.2430.000557
ORF3a34T34TacGacT513B.1.2430.000348
ORF3a34T34TacGacT1313B.1.2740.154762
ORF3a34T34MaCgaTg1212B.1.5960.001046
ORF3a34T34TacGacT1112C.370.001277
ORF3a34T34TacGacA112C.370.000116
ORF3a34T34MaCgaTg1111B.1.1.390.005607
ORF3a34T34TacGacT1111B.1.4000.004719
ORF3a34T34AAcgGcg1111B.1.617.20.000041
ORF3a34T34TacGacT1010AY.1210.001353
ORF3a34T34TacGacT910B0.00115
ORF3a34T34TacGacA110B0.000128
ORF3a34T34KaCgaAg1010B.1.1.70.000009
ORF3a34T34TacGacT1010B.1.258.181
ORF3a34T34TacGacA1010B.1.6370.000731
ORF3a34T34TacGacT99AY.100.004769
ORF3a34T34MaCgaTg99AY.290.000142
ORF3a34T34SAcgTcg99B.1.160.180.065693
ORF3a34T34TacGacT99B.1.3960.006351
ORF3a34T34MaCgaTg99B.1.6040.155172
ORF3a34T34TacGacT99B.400.003279
ORF3a34T34AAcgGcg88AY.1020.000212
ORF3a34T34MaCgaTg88AY.200.000311
ORF3a34T34TacGacT48AY.230.000279
ORF3a34T34TacGacA38AY.230.000209
ORF3a34T34TacGacC18AY.230.00007
ORF3a34T34delACG---88AY.40.000012
ORF3a34T34TacGacT78AY.450.000852
ORF3a34T34TacGacA18AY.450.000122
ORF3a34T34TacGacT88AY.610.000838
ORF3a34T34TacGacT88AY.990.008395
ORF3a34T34AAcgGcg88B.10.000073
ORF3a34T34MaCgaTg88B.1.10.000145
ORF3a34T34TacGacA88B.1.1.3980.025806
ORF3a34T34KaCgaAg88B.1.177.450.00305
ORF3a34T34MaCgaTg77A.23.10.00493
ORF3a34T34TacGacT77AY.1060.002344
ORF3a34T34TacGacT67AY.1180.000376
ORF3a34T34TacGacA17AY.1180.000063
ORF3a34T34TacGacT77AY.160.002658
ORF3a34T34PAcgCcg77AY.250.000042
ORF3a34T34TacGacT77AY.740.00081
ORF3a34T34TacGacT47AY.99.20.000369
ORF3a34T34TacGacA27AY.99.20.000184
ORF3a34T34TacGacC17AY.99.20.000092
ORF3a34T34TacGacT67B.1.1.2160.005343
ORF3a34T34TacGacC17B.1.1.2160.00089
ORF3a34T34TacGacT77B.1.1.390.003568
ORF3a34T34MaCgaTg77B.1.1600.000218
ORF3a34T34TacGacT57B.1.351.20.001513
ORF3a34T34TacGacA27B.1.351.20.000605
ORF3a34T34TacGacT77B.1.3670.005547
ORF3a34T34TacGacT77B.1.5010.051471
ORF3a34T34TacGacT77B.1.5400.067961
ORF3a34T34delACG---77B.1.617.20.000026
ORF3a34T34TacGacT77P.1.120.003388
ORF3a34T34MaCgaTg66AY.1130.000854
ORF3a34T34TacGacT56AY.300.001979
ORF3a34T34TacGacC16AY.300.000396
ORF3a34T34TacGacT66AY.34.10.00306
ORF3a34T34TacGacT56AY.540.000477
ORF3a34T34TacGacA16AY.540.000095
ORF3a34T34TacGacT66AY.9.10.000502
ORF3a34T34MaCgaTg66AY.9.20.00022
ORF3a34T34TacGacT56AY.9.20.000184
ORF3a34T34TacGacA16AY.9.20.000037
ORF3a34T34TacGacT66AY.950.004566
ORF3a34T34MaCgaTg66AY.99.20.000553
ORF3a34T34TacGacT66B.1.1.280.001867
ORF3a34T34TacGacT66B.1.1.3510.01676
ORF3a34T34TacGacT66B.1.177.600.001311
ORF3a34T34MaCgaTg66B.1.3510.000178
ORF3a34T34TacGacT66B.1.5250.000679
ORF3a34T34MaCgaTg66P.1.140.000287
ORF3a34T34TacGacT55A.23.10.003521
ORF3a34T34TacGacT55AY.120.00158
ORF3a34T34MaCgaTg55AY.390.000124
ORF3a34T34TacGacT55AY.46.60.000361
ORF3a34T34TacGacT55B.1.1.270.028249
ORF3a34T34TacGacA35B.1.1.3110.001074
ORF3a34T34TacGacT25B.1.1.3110.000716
ORF3a34T34TacGacT55B.1.1.3180.001509
ORF3a34T34TacGacT55B.1.1.3590.138889
ORF3a34T34TacGacA55B.1.1.5230.007812
ORF3a34T34TacGacT55B.1.1.770.208333
ORF3a34T34delACG---55B.1.1770.000066
ORF3a34T34MaCgaTg55B.1.177.810.000947
ORF3a34T34TacGacT55B.1.2400.001078
ORF3a34T34TacGacT55B.1.36.80.005
ORF3a34T34TacGacA55B.1.3660.02439
ORF3a34T34TacGacA45B.1.438.10.000429
ORF3a34T34TacGacT15B.1.438.10.000107
ORF3a34T34TacGacT55B.1.5170.002135
ORF3a34T34MaCgaTg55B.1.5820.002453
ORF3a34T34TacGacT55D.20.000375
ORF3a34T34KaCgaAg55P.10.000079
ORF3a34T34TacGacT55P.20.000933
ORF3a34T34AAcGGcA240.111111
ORF3a34T34SaCGaGT240.111111
ORF3a34T34SaCGaGC240.111111
ORF3a34T34AAcgGcg240.111111
ORF3a34T34MaCgaTg44A0.001548
ORF3a34T34TacGacT44A.2.50.001996
ORF3a34T34RaCgaGg44All0.000001
ORF3a34T34MaCgaTg44AY.230.000279
ORF3a34T34delACG---44AY.250.000024
ORF3a34T34MaCgaTg44AY.260.000113
ORF3a34T34KaCgaAg44AY.30.00004
ORF3a34T34MaCgaTg44AY.330.000267
ORF3a34T34MaCgaTg44AY.4.20.000087
ORF3a34T34TacGacT44AY.4.40.001637
ORF3a34T34delACG---44AY.4.50.00043
ORF3a34T34MaCgaTg44AY.690.000747
ORF3a34T34TacGacT44AY.75.10.000721
ORF3a34T34TacGacT44AY.880.003537
ORF3a34T34TacGacT44B.1.1.1590.018692
ORF3a34T34TacGacT44B.1.1.3170.001647
ORF3a34T34AAcgGcg44B.1.1.330.001684
ORF3a34T34TacGacT44B.1.1.3720.002755
ORF3a34T34MaCgaTg44B.1.1.4320.005063
ORF3a34T34TacGacT34B.1.1.630.001157
ORF3a34T34TacGacA14B.1.1.630.000386
ORF3a34T34TacGacT44B.1.160.160.003717
ORF3a34T34TacGacT44B.1.177.150.002524
ORF3a34T34MaCgaTg44B.1.2390.004884
ORF3a34T34AAcgGcg44B.1.2580.000266
ORF3a34T34MaCgaTg44B.1.3460.005242
ORF3a34T34TacGacT44B.1.36.170.001976
ORF3a34T34MaCgaTg44B.1.466.20.001565
ORF3a34T34delACG---44B.1.5260.000094
ORF3a34T34TacGacA44B.1.5950.001044
ORF3a34T34KaCgaAg44B.1.617.20.000015
ORF3a34T34PAcgCcg44B.1.617.20.000015
ORF3a34T34MaCgaTg44B.1.6210.000354
ORF3a34T34MaCgaTg44C.360.003643
ORF3a34T34TacGacT34P.1.10.000953
ORF3a34T34TacGacA14P.1.10.000318
ORF3a34T34TacGacT44P.1.150.000929
ORF3a34T34TacGacA44P.1.20.004624
ORF3a34T34MaCgaTg44R.10.00036
ORF3a34T34PAcgCcg33A0.001161
ORF3a34T34TacGacT33A.10.000846
ORF3a34T34TacGacT33AD.20.000657
ORF3a34T34MaCgaTg33AY.1000.000138
ORF3a34T34AAcgGcg33AY.1030.000019
ORF3a34T34TacGacT23AY.1080.002205
ORF3a34T34TacGacA13AY.1080.001103
ORF3a34T34MaCgaTg33AY.1110.000549
ORF3a34T34TacGacT23AY.1110.000366
ORF3a34T34TacGacA13AY.1110.000183
ORF3a34T34MaCgaTg33AY.116.10.000934
ORF3a34T34MaCgaTg33AY.1170.000254
ORF3a34T34MaCgaTg33AY.1210.000406
ORF3a34T34AAcgGcg33AY.250.000018
ORF3a34T34TacGacT23AY.29.10.000441
ORF3a34T34TacGacA13AY.29.10.000221
ORF3a34T34TacGacT33AY.3.10.000256
ORF3a34T34TacGacT33AY.360.000445
ORF3a34T34KaCgaAg33AY.430.000013
ORF3a34T34delACG---33AY.440.000018
ORF3a34T34delACG---33AY.46.20.001906
ORF3a34T34TacGacT33AY.530.000863
ORF3a34T34MaCgaTg33AY.570.001969
ORF3a34T34TacGacT33AY.580.002722
ORF3a34T34MaCgaTg33AY.60.000123
ORF3a34T34MaCgaTg33AY.610.000314
ORF3a34T34TacGacT33AY.690.00056
ORF3a34T34MaCgaTg33AY.750.000168
ORF3a34T34TacGacT33AY.9.2.10.005929
ORF3a34T34TacGacC23AY.910.001461
ORF3a34T34TacGacT13AY.910.00073
ORF3a34T34SAcgTcg33AY.99.20.000276
ORF3a34T34TacGacA23B.1.1.10.000653
ORF3a34T34TacGacT13B.1.1.10.000327
ORF3a34T34TacGacT33B.1.1.1890.004539
ORF3a34T34AAcgGcg33B.1.1.2710.166667
ORF3a34T34TacGacT33B.1.1.3680.009259
ORF3a34T34MaCgaTg33B.1.1.3890.018182
ORF3a34T34TacGacT33B.1.1.4200.003018
ORF3a34T34delACG---33B.1.160.240.013274
ORF3a34T34TacGacT33B.1.177.170.002463
ORF3a34T34delACG---33B.1.177.810.000568
ORF3a34T34TacGacT33B.1.2410.002435
ORF3a34T34TacGacT33B.1.258.110.001189
ORF3a34T34TacGacC23B.1.258.170.000208
ORF3a34T34TacGacT13B.1.258.170.000104
ORF3a34T34TacGacT33B.1.3460.003932
ORF3a34T34MaCgaTg33B.1.360.000438
ORF3a34T34TacGacT33B.1.36.290.001552
ORF3a34T34TacGacC33B.1.36.380.004926
ORF3a34T34MaCgaTg33B.1.3690.000856
ORF3a34T34TacGacT33B.1.4160.003807
ORF3a34T34AAcgGcg33B.1.4270.000151
ORF3a34T34MaCgaTg33B.1.438.10.000322
ORF3a34T34TacGacT33B.1.4780.035294
ORF3a34T34TacGacT33B.1.4990.003151
ORF3a34T34MaCgaTg33B.1.5170.001281
ORF3a34T34TacGacT33B.1.6090.001438
ORF3a34T34SAcgTcg33B.1.617.20.000011
ORF3a34T34MaCgaTg33C.230.017442
ORF3a34T34TacGacA33P.1.100.000808
ORF3a34T34MaCgaTg33Q.40.001364
ORF3a34T34TacGacT33R.10.00027
ORF3a34T34delACG---33U.30.011583
ORF3a34T34TacGacA220.111111
ORF3a34T34RaCgaGg220.111111
ORF3a34T34SAcgTcg22AY.1020.000053
ORF3a34T34TacGacT12AY.1090.00074
ORF3a34T34TacGacA12AY.1090.00074
ORF3a34T34MaCgaTg22AY.120.000632
ORF3a34T34MaCgaTg22AY.130.000322
ORF3a34T34TacGacT22AY.270.000129
ORF3a34T34AAcgGcg22AY.290.000032
ORF3a34T34MaCgaTg22AY.340.000194
ORF3a34T34AAcgGcg22AY.340.000194
ORF3a34T34PAcgCcg22AY.40.000003
ORF3a34T34KaCgaAg22AY.40.000003
ORF3a34T34TacGacT22AY.4.30.001684
ORF3a34T34MaCgaTg22AY.420.00008
ORF3a34T34TacGacT22AY.46.10.002053
ORF3a34T34KaCgaAg22AY.46.20.001271
ORF3a34T34MaCgaTg22AY.46.40.000329
ORF3a34T34MaCgaTg22AY.5.30.000675
ORF3a34T34TacGacT22AY.620.000871
ORF3a34T34TacGacT22AY.650.001066
ORF3a34T34MaCgaTg22AY.730.001331
ORF3a34T34TacGacA12AY.780.001541
ORF3a34T34TacGacT12AY.780.001541
ORF3a34T34delACG---22AY.810.003984
ORF3a34T34TacGacT22AY.850.000854
ORF3a34T34TacGacT22AY.890.009804
ORF3a34T34MaCgaTg22AY.9.10.000167
ORF3a34T34delACG---22AY.9.20.000073
ORF3a34T34TacGacT22AY.920.000575
ORF3a34T34TacGacT22AY.960.004149
ORF3a34T34SAcgTcg22B.10.000018
ORF3a34T34PAcgCcg22B.1.10.000036
ORF3a34T34TacGacT22B.1.1.1440.057143
ORF3a34T34TacGacT22B.1.1.2050.007435
ORF3a34T34MaCgaTg22B.1.1.2140.000111
ORF3a34T34TacGacT22B.1.1.250.001137
ORF3a34T34TacGacA22B.1.1.2630.003115
ORF3a34T34TacGacT22B.1.1.2840.000215
ORF3a34T34TacGacT12B.1.1.2910.000742
ORF3a34T34TacGacA12B.1.1.2910.000742
ORF3a34T34TacGacT22B.1.1.3870.117647
ORF3a34T34TacGacT22B.1.1.4090.005666
ORF3a34T34MaCgaTg22B.1.1.4340.000697
ORF3a34T34TacGacT22B.1.1.4350.068966
ORF3a34T34MaCgaTg22B.1.1.5190.000079
ORF3a34T34PAcgCcg22B.1.1.70.000002
ORF3a34T34TacGacT22B.1.1180.013423
ORF3a34T34TacGacT22B.1.1280.001271
ORF3a34T34TacGacT22B.1.1570.00597
ORF3a34T34delACG---22B.1.160.330.00885
ORF3a34T34AAcgGcg22B.1.1770.000026
ORF3a34T34MaCgaTg22B.1.177.100.001756
ORF3a34T34MaCgaTg22B.1.177.170.001642
ORF3a34T34TacGacT22B.1.177.440.001038
ORF3a34T34TacGacT22B.1.177.730.001133
ORF3a34T34KaCgaAg22B.1.177.810.000379
ORF3a34T34TacGacT22B.1.177.870.001456
ORF3a34T34TacGacT22B.1.2120.033333
ORF3a34T34MaCgaTg22B.1.258.170.000208
ORF3a34T34TacGacT22B.1.258.30.00335
ORF3a34T34MaCgaTg22B.1.2890.005319
ORF3a34T34KaCGaAA22B.1.36.160.002849
ORF3a34T34TacGacT22B.1.3710.002245
ORF3a34T34AAcgGcg22B.1.4290.000047
ORF3a34T34TacGacA12B.1.4970.000315
ORF3a34T34TacGacT12B.1.4970.000315
ORF3a34T34MaCgaTg22B.1.5010.014706
ORF3a34T34TacGacA22B.1.5460.007407
ORF3a34T34TacGacA22B.1.5680.002222
ORF3a34T34TacGacT12B.1.6280.000352
ORF3a34T34TacGacA12B.1.6280.000352
ORF3a34T34MaCgaTg22B.1.6350.035088
ORF3a34T34MaCgaTg22C.1.20.008511
ORF3a34T34TacGacT22C.36.30.001134
ORF3a34T34MaCgaTg22C.370.000232
ORF3a34T34TacGacT22N.50.003534
ORF3a34T34delACG---22P.10.000032
ORF3a34T34AAcgGcg22P.1.150.000465
ORF3a34T34MaCgaTg22P.1.170.000324
ORF3a34T34MaCgaTg22Q.10.000253
ORF3a34T34AAcgGcg22Q.10.000253
ORF3a34T34MaCgaTg22Q.80.00033
ORF3a34T34TacGacT11A0.000387
ORF3a34T34TacGacT11A.250.018182
ORF3a34T34MaCgaTg11A.270.001656
ORF3a34T34IaCGaTA11All0
ORF3a34T34NaCGaAC11All0
ORF3a34T34PAcgCcg11AW.10.003049
ORF3a34T34KaCgaAg11AY.1000.000046
ORF3a34T34PAcgCcg11AY.1020.000027
ORF3a34T34delACG---11AY.1030.000006
ORF3a34T34TacGacT11AY.1050.000643
ORF3a34T34MaCgaTg11AY.1060.000335
ORF3a34T34TacGacT11AY.1070.000466
ORF3a34T34TacGacT11AY.110.001339
ORF3a34T34delACG---11AY.1110.000183
ORF3a34T34TacGacT11AY.1160.000287
ORF3a34T34AAcgGcg11AY.1190.000035
ORF3a34T34delACG---11AY.1200.000037
ORF3a34T34MaCgaTg11AY.1200.000037
ORF3a34T34TacGacA11AY.120.10.000321
ORF3a34T34MaCgaTg11AY.120.10.000321
ORF3a34T34MaCgaTg11AY.160.00038
ORF3a34T34TacGacT11AY.16.10.00047
ORF3a34T34delACG---11AY.190.00114
ORF3a34T34AAcgGcg11AY.230.00007
ORF3a34T34delACG---11AY.230.00007
ORF3a34T34MaCgaTg11AY.23.10.000417
ORF3a34T34SAcgTcg11AY.250.000006
ORF3a34T34PAcgCcg11AY.270.000065
ORF3a34T34MaCgaTg11AY.280.00189
ORF3a34T34delACG---11AY.29.10.000221
ORF3a34T34AAcgGcg11AY.30.00001
ORF3a34T34delACG---11AY.30.00001
ORF3a34T34MaCgaTg11AY.300.000396
ORF3a34T34delACG---11AY.330.000067
ORF3a34T34delACG---11AY.39.10.00004
ORF3a34T34MaCgaTg11AY.39.10.00004
ORF3a34T34TacGacA11AY.39.10.00004
ORF3a34T34SAcgTcg11AY.40.000002
ORF3a34T34delACG---11AY.4.20.000022
ORF3a34T34TacGacA11AY.4.2.10.000149
ORF3a34T34MaCgaTg11AY.4.50.000107
ORF3a34T34KaCgaAg11AY.420.00004
ORF3a34T34AAcgGcg11AY.420.00004
ORF3a34T34AAcgGcg11AY.440.000006
ORF3a34T34KaCgaAg11AY.440.000006
ORF3a34T34delACG---11AY.450.000122
ORF3a34T34MaCgaTg11AY.460.000104
ORF3a34T34TacGacT11AY.46.20.000635
ORF3a34T34PAcgCcg11AY.46.20.000635
ORF3a34T34AAcgGcg11AY.46.20.000635
ORF3a34T34TacGacT11AY.46.30.000934
ORF3a34T34AAcgGcg11AY.46.40.000165
ORF3a34T34KaCgaAg11AY.46.60.000072
ORF3a34T34MaCgaTg11AY.480.000465
ORF3a34T34TacGacT11AY.480.000465
ORF3a34T34MaCgaTg11AY.50.000021
ORF3a34T34delACG---11AY.50.000021
ORF3a34T34AAcgGcg11AY.50.000021
ORF3a34T34MaCgaTg11AY.5.40.000277
ORF3a34T34MaCgaTg11AY.530.000288
ORF3a34T34MaCgaTg11AY.540.000095
ORF3a34T34TacGacT11AY.550.000917
ORF3a34T34TacGacT11AY.590.00053
ORF3a34T34delACG---11AY.60.000041
ORF3a34T34AAcgGcg11AY.70.000196
ORF3a34T34TacGacT11AY.700.000209
ORF3a34T34KaCgaAg11AY.740.000116
ORF3a34T34delACG---11AY.75.10.00018
ORF3a34T34MaCgaTg11AY.75.10.00018
ORF3a34T34TacGacT11AY.770.001127
ORF3a34T34PAcgCcg11AY.880.000884
ORF3a34T34KaCgaAg11AY.890.004902
ORF3a34T34KaCgaAg11AY.90.000068
ORF3a34T34MaCgaTg11AY.90.000068
ORF3a34T34AAcgGcg11AY.9.20.000037
ORF3a34T34TacGacT11AY.970.001701
ORF3a34T34MaCgaTg11AY.980.000079
ORF3a34T34delACG---11AY.990.001049
ORF3a34T34TacGacT11AZ.40.003356
ORF3a34T34MaCgaTg11B0.000128
ORF3a34T34AAcgGcg11B0.000128
ORF3a34T34delACG---11B.10.000009
ORF3a34T34KaCgaAg11B.10.000009
ORF3a34T34PAcgCcg11B.10.000009
ORF3a34T34KaCgaAg11B.1.10.000018
ORF3a34T34MaCgaTg11B.1.1.1170.009709
ORF3a34T34delACG---11B.1.1.1390.022727
ORF3a34T34AAcgGcg11B.1.1.1610.003534
ORF3a34T34delACG---11B.1.1.1890.001513
ORF3a34T34MaCgaTg11B.1.1.2160.00089
ORF3a34T34PAcgCcg11B.1.1.2160.00089
ORF3a34T34TacGacT11B.1.1.2740.005051
ORF3a34T34KaCgaAg11B.1.1.280.000311
ORF3a34T34AAcgGcg11B.1.1.280.000311
ORF3a34T34TacGacT11B.1.1.3060.000438
ORF3a34T34delACG---11B.1.1.3110.000358
ORF3a34T34TacGacT11B.1.1.3160.000925
ORF3a34T34KaCgaAg11B.1.1.330.000421
ORF3a34T34PAcgCcg11B.1.1.330.000421
ORF3a34T34AAcgGcg11B.1.1.3430.020833
ORF3a34T34KaCgaAg11B.1.1.3480.000796
ORF3a34T34TacGacT11B.1.1.3620.005618
ORF3a34T34TacGacT11B.1.1.370.000193
ORF3a34T34SAcgTcg11B.1.1.3720.000689
ORF3a34T34delACG---11B.1.1.4090.002833
ORF3a34T34TacGacT11B.1.1.4340.000349
ORF3a34T34MaCgaTg11B.1.1.460.004367
ORF3a34T34TacGacA11B.1.1.500.000679
ORF3a34T34AAcgGcg11B.1.1.5190.00004
ORF3a34T34TacGacT11B.1.1.5210.005348
ORF3a34T34NaCGaAC11B.1.1.70.000001
ORF3a34T34RaCgaGg11B.1.1.70.000001
ORF3a34T34TacGacT11B.1.1150.021739
ORF3a34T34TacGacT11B.1.160.250.011111
ORF3a34T34MaCgaTg11B.1.160.260.002421
ORF3a34T34PAcgCcg11B.1.177.110.001698
ORF3a34T34TacGacA11B.1.177.120.000152
ORF3a34T34MaCgaTg11B.1.177.120.000152
ORF3a34T34TacGacT11B.1.177.190.001431
ORF3a34T34delACG---11B.1.177.210.000076
ORF3a34T34MaCgaTg11B.1.177.40.000211
ORF3a34T34TacGacA11B.1.177.430.001477
ORF3a34T34MaCgaTg11B.1.177.580.001332
ORF3a34T34delACG---11B.1.177.60.000977
ORF3a34T34MaCgaTg11B.1.177.600.000218
ORF3a34T34TacGacT11B.1.177.70.000165
ORF3a34T34MaCgaTg11B.1.177.730.000566
ORF3a34T34TacGacA11B.1.177.80.000752
ORF3a34T34TacGacT11B.1.1920.009259
ORF3a34T34TacGacT11B.1.2060.000816
ORF3a34T34MaCgaTg11B.1.214.20.0006
ORF3a34T34delACG---11B.1.214.20.0006
ORF3a34T34TacGacT11B.1.2220.001692
ORF3a34T34AAcgGcg11B.1.2320.000537
ORF3a34T34TacGacT11B.1.2320.000537
ORF3a34T34TacGacC11B.1.2340.000132
ORF3a34T34AAcgGcg11B.1.2430.00007
ORF3a34T34delACG---11B.1.2430.00007
ORF3a34T34delACG---11B.1.2580.000067
ORF3a34T34TacGacT11B.1.258.140.00098
ORF3a34T34TacGacT11B.1.258.240.010753
ORF3a34T34AAcgGcg11B.1.3260.007576
ORF3a34T34PAcgCcg11B.1.3510.00003
ORF3a34T34MaCgaTg11B.1.351.50.0006
ORF3a34T34TacGacA11B.1.3560.001727
ORF3a34T34TacGacT11B.1.36.100.004785
ORF3a34T34delACG---11B.1.36.180.00042
ORF3a34T34TacGacT11B.1.36.220.001208
ORF3a34T34KaCGaAA11B.1.36.290.000517
ORF3a34T34AAcgGcg11B.1.3660.004878
ORF3a34T34MaCgaTg11B.1.3670.000792
ORF3a34T34TacGacT11B.1.3690.000285
ORF3a34T34MaCgaTg11B.1.3750.00082
ORF3a34T34TacGacT11B.1.3890.001002
ORF3a34T34TacGacT11B.1.3990.001934
ORF3a34T34TacGacT11B.1.4310.04
ORF3a34T34TacGacT11B.1.4320.011236
ORF3a34T34TacGacT11B.1.4480.002625
ORF3a34T34MaCgaTg11B.1.4560.003268
ORF3a34T34TacGacT11B.1.4590.004082
ORF3a34T34TacGacT11B.1.4620.007246
ORF3a34T34TacGacT11B.1.466.10.007194
ORF3a34T34TacGacT11B.1.4700.001404
ORF3a34T34TacGacT11B.1.4740.001901
ORF3a34T34MaCgaTg11B.1.5160.001957
ORF3a34T34TacGacT11B.1.5230.002451
ORF3a34T34AAcgGcg11B.1.5250.000113
ORF3a34T34TacGacT11B.1.5560.007519
ORF3a34T34TacGacT11B.1.5580.004566
ORF3a34T34TacGacT11B.1.5610.000397
ORF3a34T34AAcgGcg11B.1.5610.000397
ORF3a34T34TacGacT11B.1.5640.000426
ORF3a34T34TacGacC11B.1.5650.00081
ORF3a34T34TacGacT11B.1.5750.000303
ORF3a34T34AAcgGcg11B.1.5770.000687
ORF3a34T34TacGacT11B.1.5820.000491
ORF3a34T34AAcgGcg11B.1.617.10.000129
ORF3a34T34MaCgaTg11B.1.617.10.000129
ORF3a34T34RaCgaGg11B.1.617.20.000004
ORF3a34T34IaCGaTA11B.1.617.20.000004
ORF3a34T34TacGacT11B.1.6190.000871
ORF3a34T34TacGacT11B.1.619.10.000641
ORF3a34T34MaCgaTg11B.1.6370.000073
ORF3a34T34delACG---11B.1.6380.052632
ORF3a34T34TacGacT11B.150.017544
ORF3a34T34MaCgaTg11B.6.30.026316
ORF3a34T34TacGacT11B.6.60.000889
ORF3a34T34TacGacT11B.610.005747
ORF3a34T34TacGacT11C.1.10.076923
ORF3a34T34AAcgGcg11C.370.000116
ORF3a34T34TacGacA11D.50.004975
ORF3a34T34TacGacT11L.30.003546
ORF3a34T34TacGacT11N.60.007092
ORF3a34T34MaCgaTg11N.90.005952
ORF3a34T34AAcgGcg11P.10.000016
ORF3a34T34AAcgGcg11P.1.10.000318
ORF3a34T34MaCgaTg11P.1.120.000484
ORF3a34T34MaCgaTg11P.1.150.000232
ORF3a34T34delACG---11P.1.150.000232
ORF3a34T34KaCgaAg11P.1.170.000162
ORF3a34T34TacGacT11P.1.170.000162
ORF3a34T34TacGacA11P.1.70.000319
ORF3a34T34MaCgaTg11P.20.000187
ORF3a34T34TacGacA11Q.30.000145
ORF3a34T34TacGacT11Q.40.000455
ORF3a34T34TacGacA11Q.80.000165
ORF3a34T34delACG---11Q.80.000165
ORF3a34T34AAcgGcg11R.10.00009