CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 33 | A33S | nonsyn | Gca | Tca | 17727 | 17727 | 1 | 25489-25491 | |
ORF3a | 33 | A33A | syn | gcA | gcG | 1666 | 824 | 0.494598 | 25489-25491 | |
ORF3a | 33 | A33A | syn | gcA | gcT | 1666 | 778 | 0.466987 | 25489-25491 | |
ORF3a | 33 | A33A | syn | gcA | gcC | 1666 | 64 | 0.0384154 | 25489-25491 | |
ORF3a | 33 | A33V | nonsyn | gCa | gTa | 533 | 533 | 1 | 25489-25491 | |
ORF3a | 33 | A33E | nonsyn | gCa | gAa | 312 | 312 | 1 | 25489-25491 | |
ORF3a | 33 | A33T | nonsyn | Gca | Aca | 301 | 301 | 1 | 25489-25491 | |
ORF3a | 33 | A33del | del | GCA | --- | 154 | 154 | 1 | 25489-25491 | |
ORF3a | 33 | A33P | nonsyn | Gca | Cca | 32 | 32 | 1 | 25489-25491 | |
ORF3a | 33 | A33L | nonsyn | GCa | TTa | 12 | 12 | 1 | 25489-25491 | |
ORF3a | 33 | A33del1 | del | gcA | gc- | 7 | 3 | 0.428571 | 25489-25491 | |
ORF3a | 33 | A33del1 | del | Gca | -ca | 7 | 3 | 0.428571 | 25489-25491 | |
ORF3a | 33 | A33del1 | del | gCa | g-a | 7 | 1 | 0.142857 | 25489-25491 | |
ORF3a | 33 | A33G | nonsyn | gCa | gGa | 3 | 3 | 1 | 25489-25491 | |
ORF3a | 33 | A33K | nonsyn | GCa | AAa | 1 | 1 | 1 | 25489-25491 | |
ORF3a | 33 | A33Q | nonsyn | GCa | CAa | 1 | 1 | 1 | 25489-25491 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 33 | A33S | Gca | Tca | 17727 | 17727 | All | 0.00339 |
ORF3a | 33 | A33S | Gca | Tca | 3128 | 3128 | AY.4 | 0.004868 |
ORF3a | 33 | A33S | Gca | Tca | 2963 | 2963 | B.1.1.7 | 0.002653 |
ORF3a | 33 | A33S | Gca | Tca | 1961 | 1961 | B.1.526 | 0.046092 |
ORF3a | 33 | A33S | Gca | Tca | 1727 | 1727 | B.1.617.2 | 0.006503 |
ORF3a | 33 | A33A | gcA | gcG | 824 | 1666 | All | 0.000158 |
ORF3a | 33 | A33A | gcA | gcT | 778 | 1666 | All | 0.000149 |
ORF3a | 33 | A33A | gcA | gcC | 64 | 1666 | All | 0.000012 |
ORF3a | 33 | A33S | Gca | Tca | 1465 | 1465 | AY.43 | 0.006491 |
ORF3a | 33 | A33S | Gca | Tca | 887 | 887 | AY.98.1 | 0.042958 |
ORF3a | 33 | A33S | Gca | Tca | 658 | 658 | B.1.429 | 0.015482 |
ORF3a | 33 | A33A | gcA | gcT | 559 | 559 | AY.83 | 0.963793 |
ORF3a | 33 | A33V | gCa | gTa | 533 | 533 | All | 0.000102 |
ORF3a | 33 | A33S | Gca | Tca | 480 | 480 | AY.4.2 | 0.010411 |
ORF3a | 33 | A33A | gcA | gcG | 291 | 366 | B.1.1.7 | 0.000261 |
ORF3a | 33 | A33A | gcA | gcT | 50 | 366 | B.1.1.7 | 0.000045 |
ORF3a | 33 | A33A | gcA | gcC | 25 | 366 | B.1.1.7 | 0.000022 |
ORF3a | 33 | A33A | gcA | gcG | 356 | 356 | B.1.422 | 0.289196 |
ORF3a | 33 | A33S | Gca | Tca | 345 | 345 | AY.98 | 0.027253 |
ORF3a | 33 | A33V | gCa | gTa | 344 | 344 | B.1.1.7 | 0.000308 |
ORF3a | 33 | A33S | Gca | Tca | 325 | 325 | B.1.241 | 0.263799 |
ORF3a | 33 | A33E | gCa | gAa | 312 | 312 | All | 0.00006 |
ORF3a | 33 | A33S | Gca | Tca | 302 | 302 | AY.103 | 0.001875 |
ORF3a | 33 | A33T | Gca | Aca | 301 | 301 | All | 0.000058 |
ORF3a | 33 | A33S | Gca | Tca | 293 | 293 | B.1.36.22 | 0.353865 |
ORF3a | 33 | A33S | Gca | Tca | 282 | 282 | B.1.1.214 | 0.015639 |
ORF3a | 33 | A33S | Gca | Tca | 263 | 263 | P.1.14 | 0.012572 |
ORF3a | 33 | A33S | Gca | Tca | 196 | 196 | AY.44 | 0.001193 |
ORF3a | 33 | A33S | Gca | Tca | 168 | 168 | B.1 | 0.001539 |
ORF3a | 33 | A33del | GCA | --- | 154 | 154 | All | 0.000029 |
ORF3a | 33 | A33S | Gca | Tca | 141 | 141 | AY.25 | 0.000848 |
ORF3a | 33 | A33S | Gca | Tca | 138 | 138 | AY.3 | 0.001373 |
ORF3a | 33 | A33S | Gca | Tca | 102 | 102 | B.1.1 | 0.00185 |
ORF3a | 33 | A33T | Gca | Aca | 97 | 97 | B.1.1.7 | 0.000087 |
ORF3a | 33 | A33S | Gca | Tca | 93 | 93 | B.1.351 | 0.002765 |
ORF3a | 33 | A33S | Gca | Tca | 92 | 92 | B.1.258 | 0.006122 |
ORF3a | 33 | A33S | Gca | Tca | 89 | 89 | AY.29 | 0.001404 |
ORF3a | 33 | A33E | gCa | gAa | 88 | 88 | AY.43 | 0.00039 |
ORF3a | 33 | A33A | gcA | gcG | 75 | 75 | AY.5.4 | 0.020753 |
ORF3a | 33 | A33S | Gca | Tca | 69 | 69 | B.1.177 | 0.000909 |
ORF3a | 33 | A33T | Gca | Aca | 66 | 66 | B.1.1.284 | 0.007088 |
ORF3a | 33 | A33S | Gca | Tca | 64 | 64 | AY.46.6 | 0.004621 |
ORF3a | 33 | A33S | Gca | Tca | 54 | 54 | P.1 | 0.000851 |
ORF3a | 33 | A33S | Gca | Tca | 54 | 54 | Q.8 | 0.008905 |
ORF3a | 33 | A33S | Gca | Tca | 53 | 53 | B.1.2 | 0.000467 |
ORF3a | 33 | A33S | Gca | Tca | 48 | 48 | AY.33 | 0.003205 |
ORF3a | 33 | A33S | Gca | Tca | 48 | 48 | AY.6 | 0.001974 |
ORF3a | 33 | A33S | Gca | Tca | 48 | 48 | B.1.240 | 0.010347 |
ORF3a | 33 | A33V | gCa | gTa | 43 | 43 | C.37 | 0.004991 |
ORF3a | 33 | A33S | Gca | Tca | 42 | 42 | B.1.36 | 0.006128 |
ORF3a | 33 | A33S | Gca | Tca | 41 | 41 | P.1.17 | 0.006632 |
ORF3a | 33 | A33E | gCa | gAa | 37 | 37 | P.1.12 | 0.017909 |
ORF3a | 33 | A33S | Gca | Tca | 35 | 35 | AY.39 | 0.000865 |
ORF3a | 33 | A33S | Gca | Tca | 35 | 35 | P.2 | 0.006532 |
ORF3a | 33 | A33del | GCA | --- | 34 | 34 | B.1.1.7 | 0.00003 |
ORF3a | 33 | A33A | gcA | gcG | 17 | 33 | AY.4 | 0.000026 |
ORF3a | 33 | A33A | gcA | gcT | 16 | 33 | AY.4 | 0.000025 |
ORF3a | 33 | A33P | Gca | Cca | 32 | 32 | All | 0.000006 |
ORF3a | 33 | A33S | Gca | Tca | 32 | 32 | AY.65 | 0.017058 |
ORF3a | 33 | A33S | Gca | Tca | 32 | 32 | B.1.1.189 | 0.048411 |
ORF3a | 33 | A33S | Gca | Tca | 30 | 30 | B.1.160 | 0.000936 |
ORF3a | 33 | A33A | gcA | gcC | 25 | 29 | AY.43 | 0.000111 |
ORF3a | 33 | A33A | gcA | gcG | 3 | 29 | AY.43 | 0.000013 |
ORF3a | 33 | A33A | gcA | gcT | 1 | 29 | AY.43 | 0.000004 |
ORF3a | 33 | A33E | gCa | gAa | 29 | 29 | B.1.1.7 | 0.000026 |
ORF3a | 33 | A33S | Gca | Tca | 28 | 28 | AY.102 | 0.000742 |
ORF3a | 33 | A33V | gCa | gTa | 28 | 28 | AY.4 | 0.000044 |
ORF3a | 33 | A33S | Gca | Tca | 28 | 28 | B.1.282 | 0.41791 |
ORF3a | 33 | A33S | Gca | Tca | 27 | 27 | B.1.1.28 | 0.008403 |
ORF3a | 33 | A33S | Gca | Tca | 24 | 24 | AY.26 | 0.000679 |
ORF3a | 33 | A33S | Gca | Tca | 23 | 23 | AY.46 | 0.002394 |
ORF3a | 33 | A33S | Gca | Tca | 23 | 23 | B.1.243 | 0.0016 |
ORF3a | 33 | A33E | gCa | gAa | 23 | 23 | P.1.14 | 0.001099 |
ORF3a | 33 | A33S | Gca | Tca | 22 | 22 | AY.9.2 | 0.000808 |
ORF3a | 33 | A33del | GCA | --- | 22 | 22 | B.1.1 | 0.000399 |
ORF3a | 33 | A33S | Gca | Tca | 21 | 21 | AY.100 | 0.000966 |
ORF3a | 33 | A33S | Gca | Tca | 20 | 20 | B.1.1.1 | 0.006534 |
ORF3a | 33 | A33S | Gca | Tca | 19 | 19 | AY.36 | 0.002816 |
ORF3a | 33 | A33A | gcA | gcG | 8 | 18 | B.1 | 0.000073 |
ORF3a | 33 | A33A | gcA | gcC | 7 | 18 | B.1 | 0.000064 |
ORF3a | 33 | A33A | gcA | gcT | 3 | 18 | B.1 | 0.000027 |
ORF3a | 33 | A33S | Gca | Tca | 17 | 17 | AY.119 | 0.0006 |
ORF3a | 33 | A33S | Gca | Tca | 17 | 17 | AY.20 | 0.000661 |
ORF3a | 33 | A33V | gCa | gTa | 17 | 17 | B.1.617.2 | 0.000064 |
ORF3a | 33 | A33S | Gca | Tca | 16 | 16 | AY.106 | 0.005358 |
ORF3a | 33 | A33S | Gca | Tca | 16 | 16 | AY.42 | 0.000644 |
ORF3a | 33 | A33del | GCA | --- | 16 | 16 | AY.43 | 0.000071 |
ORF3a | 33 | A33T | Gca | Aca | 16 | 16 | AY.7.1 | 0.001803 |
ORF3a | 33 | A33A | gcA | gcT | 16 | 16 | AY.93 | 0.004369 |
ORF3a | 33 | A33V | gCa | gTa | 16 | 16 | B.1.160 | 0.000499 |
ORF3a | 33 | A33S | Gca | Tca | 15 | 15 | AY.120 | 0.000558 |
ORF3a | 33 | A33S | Gca | Tca | 15 | 15 | AY.120.1 | 0.004815 |
ORF3a | 33 | A33S | Gca | Tca | 15 | 15 | AY.5 | 0.00031 |
ORF3a | 33 | A33T | Gca | Aca | 15 | 15 | B.1 | 0.000137 |
ORF3a | 33 | A33S | Gca | Tca | 15 | 15 | B.1.1.291 | 0.011136 |
ORF3a | 33 | A33A | gcA | gcT | 15 | 15 | B.1.561 | 0.005955 |
ORF3a | 33 | A33A | gcA | gcT | 13 | 15 | P.1 | 0.000205 |
ORF3a | 33 | A33A | gcA | gcG | 2 | 15 | P.1 | 0.000032 |
ORF3a | 33 | A33S | Gca | Tca | 14 | 14 | AY.121 | 0.001894 |
ORF3a | 33 | A33S | Gca | Tca | 14 | 14 | AY.9.1 | 0.001172 |
ORF3a | 33 | A33E | gCa | gAa | 14 | 14 | B.1.2 | 0.000123 |
ORF3a | 33 | A33S | Gca | Tca | 14 | 14 | B.1.621 | 0.001239 |
ORF3a | 33 | A33A | gcA | gcT | 13 | 13 | AY.119 | 0.000459 |
ORF3a | 33 | A33E | gCa | gAa | 13 | 13 | AY.42 | 0.000523 |
ORF3a | 33 | A33A | gcA | gcT | 8 | 13 | AY.45 | 0.000973 |
ORF3a | 33 | A33A | gcA | gcG | 5 | 13 | AY.45 | 0.000608 |
ORF3a | 33 | A33E | gCa | gAa | 13 | 13 | AY.55 | 0.011927 |
ORF3a | 33 | A33S | Gca | Tca | 13 | 13 | AY.75.1 | 0.002344 |
ORF3a | 33 | A33L | GCa | TTa | 12 | 12 | All | 0.000002 |
ORF3a | 33 | A33S | Gca | Tca | 12 | 12 | AY.23 | 0.000837 |
ORF3a | 33 | A33T | Gca | Aca | 12 | 12 | AY.26 | 0.00034 |
ORF3a | 33 | A33V | gCa | gTa | 12 | 12 | AY.43 | 0.000053 |
ORF3a | 33 | A33S | Gca | Tca | 12 | 12 | AY.46.5 | 0.002381 |
ORF3a | 33 | A33S | Gca | Tca | 12 | 12 | AY.47 | 0.000373 |
ORF3a | 33 | A33L | GCa | TTa | 12 | 12 | AY.98.1 | 0.000581 |
ORF3a | 33 | A33A | gcA | gcG | 12 | 12 | B.1.243 | 0.000835 |
ORF3a | 33 | A33S | Gca | Tca | 12 | 12 | C.37 | 0.001393 |
ORF3a | 33 | A33V | gCa | gTa | 12 | 12 | Q.8 | 0.001979 |
ORF3a | 33 | A33S | Gca | Tca | 11 | 11 | AY.4.5 | 0.001182 |
ORF3a | 33 | A33S | Gca | Tca | 11 | 11 | AY.45 | 0.001339 |
ORF3a | 33 | A33S | Gca | Tca | 11 | 11 | AY.74 | 0.001272 |
ORF3a | 33 | A33S | Gca | Tca | 11 | 11 | B.1.1.519 | 0.000437 |
ORF3a | 33 | A33S | Gca | Tca | 11 | 11 | B.1.466.2 | 0.004304 |
ORF3a | 33 | A33A | gcA | gcT | 10 | 10 | AY.103 | 0.000062 |
ORF3a | 33 | A33A | gcA | gcT | 5 | 10 | B.1.2 | 0.000044 |
ORF3a | 33 | A33A | gcA | gcG | 5 | 10 | B.1.2 | 0.000044 |
ORF3a | 33 | A33S | Gca | Tca | 10 | 10 | B.1.289 | 0.026596 |
ORF3a | 33 | A33S | Gca | Tca | 10 | 10 | B.1.369 | 0.002852 |
ORF3a | 33 | A33E | gCa | gAa | 9 | 9 | A.19 | 0.084906 |
ORF3a | 33 | A33T | Gca | Aca | 9 | 9 | AY.4 | 0.000014 |
ORF3a | 33 | A33S | Gca | Tca | 9 | 9 | AY.61 | 0.000943 |
ORF3a | 33 | A33T | Gca | Aca | 9 | 9 | AY.95 | 0.006849 |
ORF3a | 33 | A33E | gCa | gAa | 9 | 9 | B.1.617.2 | 0.000034 |
ORF3a | 33 | A33S | Gca | Tca | 9 | 9 | B.1.637 | 0.000658 |
ORF3a | 33 | A33A | gcA | gcT | 8 | 8 | AY.100 | 0.000368 |
ORF3a | 33 | A33S | Gca | Tca | 8 | 8 | AY.118 | 0.000501 |
ORF3a | 33 | A33T | Gca | Aca | 8 | 8 | AY.25 | 0.000048 |
ORF3a | 33 | A33del | GCA | --- | 8 | 8 | AY.4 | 0.000012 |
ORF3a | 33 | A33S | Gca | Tca | 8 | 8 | AY.89 | 0.039216 |
ORF3a | 33 | A33S | Gca | Tca | 8 | 8 | AY.99.2 | 0.000737 |
ORF3a | 33 | A33S | Gca | Tca | 8 | 8 | B.1.1.222 | 0.001632 |
ORF3a | 33 | A33A | gcA | gcG | 8 | 8 | B.1.128 | 0.005083 |
ORF3a | 33 | A33A | gcA | gcG | 8 | 8 | B.1.221 | 0.000568 |
ORF3a | 33 | A33S | Gca | Tca | 8 | 8 | B.1.258.17 | 0.000832 |
ORF3a | 33 | A33del1 | Gca | -ca | 3 | 7 | All | 0.000001 |
ORF3a | 33 | A33del1 | gcA | gc- | 3 | 7 | All | 0.000001 |
ORF3a | 33 | A33del1 | gCa | g-a | 1 | 7 | All | 0 |
ORF3a | 33 | A33T | Gca | Aca | 7 | 7 | AY.103 | 0.000043 |
ORF3a | 33 | A33S | Gca | Tca | 7 | 7 | AY.116 | 0.002007 |
ORF3a | 33 | A33T | Gca | Aca | 7 | 7 | AY.118 | 0.000439 |
ORF3a | 33 | A33E | gCa | gAa | 7 | 7 | AY.25 | 0.000042 |
ORF3a | 33 | A33S | Gca | Tca | 7 | 7 | AY.4.2.1 | 0.001043 |
ORF3a | 33 | A33S | Gca | Tca | 7 | 7 | AY.56 | 0.011236 |
ORF3a | 33 | A33S | Gca | Tca | 7 | 7 | AY.92 | 0.002011 |
ORF3a | 33 | A33S | Gca | Tca | 7 | 7 | B.1.298 | 0.014799 |
ORF3a | 33 | A33S | Gca | Tca | 7 | 7 | B.1.471 | 0.019126 |
ORF3a | 33 | A33del | GCA | --- | 7 | 7 | B.1.617.2 | 0.000026 |
ORF3a | 33 | A33A | gcA | gcT | 4 | 7 | B.1.617.2 | 0.000015 |
ORF3a | 33 | A33A | gcA | gcC | 2 | 7 | B.1.617.2 | 0.000008 |
ORF3a | 33 | A33A | gcA | gcG | 1 | 7 | B.1.617.2 | 0.000004 |
ORF3a | 33 | A33V | gCa | gTa | 6 | 6 | AY.103 | 0.000037 |
ORF3a | 33 | A33S | Gca | Tca | 6 | 6 | AY.13 | 0.000966 |
ORF3a | 33 | A33A | gcA | gcT | 6 | 6 | AY.64 | 0.003571 |
ORF3a | 33 | A33S | Gca | Tca | 6 | 6 | B.1.1.317 | 0.00247 |
ORF3a | 33 | A33T | Gca | Aca | 6 | 6 | B.1.1.519 | 0.000238 |
ORF3a | 33 | A33P | Gca | Cca | 6 | 6 | B.1.1.7 | 0.000005 |
ORF3a | 33 | A33S | Gca | Tca | 6 | 6 | B.1.177.15 | 0.003785 |
ORF3a | 33 | A33S | Gca | Tca | 6 | 6 | B.1.177.60 | 0.001311 |
ORF3a | 33 | A33S | Gca | Tca | 6 | 6 | B.1.232 | 0.003224 |
ORF3a | 33 | A33S | Gca | Tca | 6 | 6 | B.1.576 | 0.00544 |
ORF3a | 33 | A33S | Gca | Tca | 6 | 6 | B.1.617.1 | 0.000774 |
ORF3a | 33 | A33T | Gca | Aca | 6 | 6 | B.1.617.2 | 0.000023 |
ORF3a | 33 | A33E | gCa | gAa | 5 | 5 | AY.100 | 0.00023 |
ORF3a | 33 | A33S | Gca | Tca | 5 | 5 | AY.111 | 0.000916 |
ORF3a | 33 | A33A | gcA | gcT | 5 | 5 | AY.27 | 0.000324 |
ORF3a | 33 | A33E | gCa | gAa | 5 | 5 | AY.39 | 0.000124 |
ORF3a | 33 | A33E | gCa | gAa | 5 | 5 | AY.4 | 0.000008 |
ORF3a | 33 | A33A | gcA | gcT | 3 | 5 | AY.44 | 0.000018 |
ORF3a | 33 | A33A | gcA | gcG | 2 | 5 | AY.44 | 0.000012 |
ORF3a | 33 | A33S | Gca | Tca | 5 | 5 | AY.46.4 | 0.000823 |
ORF3a | 33 | A33S | Gca | Tca | 5 | 5 | AY.75 | 0.00028 |
ORF3a | 33 | A33E | gCa | gAa | 5 | 5 | B.1 | 0.000046 |
ORF3a | 33 | A33A | gcA | gcC | 2 | 5 | B.1.1 | 0.000036 |
ORF3a | 33 | A33A | gcA | gcG | 2 | 5 | B.1.1 | 0.000036 |
ORF3a | 33 | A33A | gcA | gcT | 1 | 5 | B.1.1 | 0.000018 |
ORF3a | 33 | A33S | Gca | Tca | 5 | 5 | B.1.1.63 | 0.001929 |
ORF3a | 33 | A33V | gCa | gTa | 5 | 5 | B.1.131 | 0.04386 |
ORF3a | 33 | A33del | GCA | --- | 5 | 5 | B.1.177 | 0.000066 |
ORF3a | 33 | A33S | Gca | Tca | 5 | 5 | B.1.218 | 0.025773 |
ORF3a | 33 | A33S | Gca | Tca | 5 | 5 | B.1.427 | 0.000252 |
ORF3a | 33 | A33A | gcA | gcT | 5 | 5 | B.1.429 | 0.000118 |
ORF3a | 33 | A33S | Gca | Tca | 5 | 5 | B.1.456 | 0.01634 |
ORF3a | 33 | A33S | Gca | Tca | 5 | 5 | C.36.3 | 0.002836 |
ORF3a | 33 | A33A | gcA | gcG | 5 | 5 | P.1.16 | 0.001871 |
ORF3a | 33 | A33A | gcA | gcG | 3 | 4 | AY.102 | 0.00008 |
ORF3a | 33 | A33A | gcA | gcT | 1 | 4 | AY.102 | 0.000027 |
ORF3a | 33 | A33P | Gca | Cca | 4 | 4 | AY.103 | 0.000025 |
ORF3a | 33 | A33E | gCa | gAa | 4 | 4 | AY.103 | 0.000025 |
ORF3a | 33 | A33S | Gca | Tca | 4 | 4 | AY.105 | 0.002572 |
ORF3a | 33 | A33S | Gca | Tca | 4 | 4 | AY.117 | 0.000338 |
ORF3a | 33 | A33del | GCA | --- | 4 | 4 | AY.25 | 0.000024 |
ORF3a | 33 | A33S | Gca | Tca | 4 | 4 | AY.39.1 | 0.000158 |
ORF3a | 33 | A33P | Gca | Cca | 4 | 4 | AY.4 | 0.000006 |
ORF3a | 33 | A33S | Gca | Tca | 4 | 4 | AY.4.4 | 0.001637 |
ORF3a | 33 | A33del | GCA | --- | 4 | 4 | AY.4.5 | 0.00043 |
ORF3a | 33 | A33V | gCa | gTa | 4 | 4 | AY.44 | 0.000024 |
ORF3a | 33 | A33del | GCA | --- | 4 | 4 | AY.44 | 0.000024 |
ORF3a | 33 | A33S | Gca | Tca | 4 | 4 | AY.55 | 0.00367 |
ORF3a | 33 | A33S | Gca | Tca | 4 | 4 | AY.67 | 0.001857 |
ORF3a | 33 | A33S | Gca | Tca | 4 | 4 | AY.9 | 0.00027 |
ORF3a | 33 | A33S | Gca | Tca | 4 | 4 | AY.95 | 0.003044 |
ORF3a | 33 | A33P | Gca | Cca | 4 | 4 | AY.98 | 0.000316 |
ORF3a | 33 | A33V | gCa | gTa | 4 | 4 | B.1.1 | 0.000073 |
ORF3a | 33 | A33S | Gca | Tca | 4 | 4 | B.1.311 | 0.001098 |
ORF3a | 33 | A33T | Gca | Aca | 4 | 4 | B.1.470 | 0.005618 |
ORF3a | 33 | A33A | gcA | gcT | 4 | 4 | B.1.525 | 0.000453 |
ORF3a | 33 | A33S | Gca | Tca | 4 | 4 | B.1.525 | 0.000453 |
ORF3a | 33 | A33S | Gca | Tca | 4 | 4 | B.1.623 | 0.002146 |
ORF3a | 33 | A33T | Gca | Aca | 4 | 4 | P.1 | 0.000063 |
ORF3a | 33 | A33S | Gca | Tca | 4 | 4 | Q.1 | 0.000505 |
ORF3a | 33 | A33A | gcA | gcG | 4 | 4 | R.1 | 0.00036 |
ORF3a | 33 | A33G | gCa | gGa | 3 | 3 | 0.166667 | |
ORF3a | 33 | A33G | gCa | gGa | 3 | 3 | All | 0.000001 |
ORF3a | 33 | A33S | Gca | Tca | 3 | 3 | AY.110 | 0.000338 |
ORF3a | 33 | A33S | Gca | Tca | 3 | 3 | AY.14 | 0.000264 |
ORF3a | 33 | A33S | Gca | Tca | 3 | 3 | AY.16 | 0.001139 |
ORF3a | 33 | A33A | gcA | gcG | 2 | 3 | AY.20 | 0.000078 |
ORF3a | 33 | A33A | gcA | gcT | 1 | 3 | AY.20 | 0.000039 |
ORF3a | 33 | A33S | Gca | Tca | 3 | 3 | AY.27 | 0.000194 |
ORF3a | 33 | A33S | Gca | Tca | 3 | 3 | AY.28 | 0.005671 |
ORF3a | 33 | A33S | Gca | Tca | 3 | 3 | AY.35 | 0.000699 |
ORF3a | 33 | A33V | gCa | gTa | 3 | 3 | AY.39 | 0.000074 |
ORF3a | 33 | A33T | Gca | Aca | 3 | 3 | AY.43 | 0.000013 |
ORF3a | 33 | A33E | gCa | gAa | 3 | 3 | AY.44 | 0.000018 |
ORF3a | 33 | A33del | GCA | --- | 3 | 3 | AY.46.2 | 0.001906 |
ORF3a | 33 | A33E | gCa | gAa | 3 | 3 | AY.46.6 | 0.000217 |
ORF3a | 33 | A33S | Gca | Tca | 3 | 3 | AY.84 | 0.001312 |
ORF3a | 33 | A33V | gCa | gTa | 3 | 3 | AY.98.1 | 0.000145 |
ORF3a | 33 | A33A | gcA | gcC | 3 | 3 | AZ.1 | 0.002602 |
ORF3a | 33 | A33S | Gca | Tca | 3 | 3 | B.1.1.125 | 0.030612 |
ORF3a | 33 | A33S | Gca | Tca | 3 | 3 | B.1.1.306 | 0.001315 |
ORF3a | 33 | A33S | Gca | Tca | 3 | 3 | B.1.1.318 | 0.000905 |
ORF3a | 33 | A33S | Gca | Tca | 3 | 3 | B.1.1.372 | 0.002066 |
ORF3a | 33 | A33S | Gca | Tca | 3 | 3 | B.1.1.5 | 0.025 |
ORF3a | 33 | A33del | GCA | --- | 3 | 3 | B.1.160.24 | 0.013274 |
ORF3a | 33 | A33E | gCa | gAa | 3 | 3 | B.1.177 | 0.00004 |
ORF3a | 33 | A33S | Gca | Tca | 3 | 3 | B.1.177.7 | 0.000495 |
ORF3a | 33 | A33del | GCA | --- | 3 | 3 | B.1.177.81 | 0.000568 |
ORF3a | 33 | A33V | gCa | gTa | 3 | 3 | B.1.2 | 0.000026 |
ORF3a | 33 | A33A | gcA | gcT | 3 | 3 | B.1.351 | 0.000089 |
ORF3a | 33 | A33S | Gca | Tca | 3 | 3 | B.1.36.25 | 0.006623 |
ORF3a | 33 | A33E | gCa | gAa | 3 | 3 | B.1.466.2 | 0.001174 |
ORF3a | 33 | A33T | Gca | Aca | 3 | 3 | B.1.565 | 0.002431 |
ORF3a | 33 | A33S | Gca | Tca | 3 | 3 | B.1.575 | 0.00091 |
ORF3a | 33 | A33T | Gca | Aca | 3 | 3 | B.1.577 | 0.002062 |
ORF3a | 33 | A33S | Gca | Tca | 3 | 3 | B.1.596 | 0.000261 |
ORF3a | 33 | A33S | Gca | Tca | 3 | 3 | B.1.599 | 0.010949 |
ORF3a | 33 | A33A | gcA | gcT | 3 | 3 | C.1 | 0.007177 |
ORF3a | 33 | A33E | gCa | gAa | 3 | 3 | P.1 | 0.000047 |
ORF3a | 33 | A33S | Gca | Tca | 3 | 3 | P.1.10 | 0.000808 |
ORF3a | 33 | A33del | GCA | --- | 3 | 3 | U.3 | 0.011583 |
ORF3a | 33 | A33E | gCa | gAa | 2 | 2 | 0.111111 | |
ORF3a | 33 | A33S | Gca | Tca | 2 | 2 | AY.101 | 0.000981 |
ORF3a | 33 | A33V | gCa | gTa | 2 | 2 | AY.102 | 0.000053 |
ORF3a | 33 | A33E | gCa | gAa | 2 | 2 | AY.102 | 0.000053 |
ORF3a | 33 | A33V | gCa | gTa | 2 | 2 | AY.105 | 0.001286 |
ORF3a | 33 | A33A | gcA | gcT | 2 | 2 | AY.106 | 0.00067 |
ORF3a | 33 | A33S | Gca | Tca | 2 | 2 | AY.108 | 0.002205 |
ORF3a | 33 | A33S | Gca | Tca | 2 | 2 | AY.116.1 | 0.000623 |
ORF3a | 33 | A33V | gCa | gTa | 2 | 2 | AY.14 | 0.000176 |
ORF3a | 33 | A33S | Gca | Tca | 2 | 2 | AY.23.1 | 0.000835 |
ORF3a | 33 | A33A | gcA | gcG | 1 | 2 | AY.25 | 0.000006 |
ORF3a | 33 | A33A | gcA | gcT | 1 | 2 | AY.25 | 0.000006 |
ORF3a | 33 | A33T | Gca | Aca | 2 | 2 | AY.29 | 0.000032 |
ORF3a | 33 | A33A | gcA | gcT | 2 | 2 | AY.3 | 0.00002 |
ORF3a | 33 | A33S | Gca | Tca | 2 | 2 | AY.3.1 | 0.000171 |
ORF3a | 33 | A33P | Gca | Cca | 2 | 2 | AY.34 | 0.000194 |
ORF3a | 33 | A33A | gcA | gcG | 2 | 2 | AY.5.3 | 0.000675 |
ORF3a | 33 | A33A | gcA | gcT | 2 | 2 | AY.52 | 0.001629 |
ORF3a | 33 | A33S | Gca | Tca | 2 | 2 | AY.54 | 0.000191 |
ORF3a | 33 | A33S | Gca | Tca | 2 | 2 | AY.7.1 | 0.000225 |
ORF3a | 33 | A33S | Gca | Tca | 2 | 2 | AY.70 | 0.000417 |
ORF3a | 33 | A33S | Gca | Tca | 2 | 2 | AY.71 | 0.00095 |
ORF3a | 33 | A33S | Gca | Tca | 2 | 2 | AY.73 | 0.001331 |
ORF3a | 33 | A33del | GCA | --- | 2 | 2 | AY.81 | 0.003984 |
ORF3a | 33 | A33S | Gca | Tca | 2 | 2 | AY.88 | 0.001768 |
ORF3a | 33 | A33del | GCA | --- | 2 | 2 | AY.9.2 | 0.000073 |
ORF3a | 33 | A33S | Gca | Tca | 2 | 2 | B | 0.000256 |
ORF3a | 33 | A33del1 | Gca | -ca | 1 | 2 | B.1 | 0.000009 |
ORF3a | 33 | A33del1 | gcA | gc- | 1 | 2 | B.1 | 0.000009 |
ORF3a | 33 | A33S | Gca | Tca | 2 | 2 | B.1.1.216 | 0.001781 |
ORF3a | 33 | A33T | Gca | Aca | 2 | 2 | B.1.1.222 | 0.000408 |
ORF3a | 33 | A33V | gCa | gTa | 2 | 2 | B.1.1.231 | 0.006192 |
ORF3a | 33 | A33A | gcA | gcG | 1 | 2 | B.1.1.28 | 0.000311 |
ORF3a | 33 | A33A | gcA | gcT | 1 | 2 | B.1.1.28 | 0.000311 |
ORF3a | 33 | A33A | gcA | gcG | 2 | 2 | B.1.1.308 | 0.023529 |
ORF3a | 33 | A33S | Gca | Tca | 2 | 2 | B.1.1.324 | 0.105263 |
ORF3a | 33 | A33S | Gca | Tca | 2 | 2 | B.1.1.354 | 0.008772 |
ORF3a | 33 | A33S | Gca | Tca | 2 | 2 | B.1.1.432 | 0.002532 |
ORF3a | 33 | A33V | gCa | gTa | 2 | 2 | B.1.1.519 | 0.000079 |
ORF3a | 33 | A33A | gcA | gcG | 2 | 2 | B.1.1.521 | 0.010695 |
ORF3a | 33 | A33del1 | Gca | -ca | 1 | 2 | B.1.1.7 | 0.000001 |
ORF3a | 33 | A33del1 | gCa | g-a | 1 | 2 | B.1.1.7 | 0.000001 |
ORF3a | 33 | A33T | Gca | Aca | 2 | 2 | B.1.147 | 0.001512 |
ORF3a | 33 | A33del | GCA | --- | 2 | 2 | B.1.160.33 | 0.00885 |
ORF3a | 33 | A33A | gcA | gcT | 2 | 2 | B.1.177.48 | 0.00625 |
ORF3a | 33 | A33del1 | gcA | gc- | 2 | 2 | B.1.2 | 0.000018 |
ORF3a | 33 | A33T | Gca | Aca | 2 | 2 | B.1.221 | 0.000142 |
ORF3a | 33 | A33P | Gca | Cca | 2 | 2 | B.1.258.3 | 0.00335 |
ORF3a | 33 | A33T | Gca | Aca | 2 | 2 | B.1.351 | 0.000059 |
ORF3a | 33 | A33S | Gca | Tca | 2 | 2 | B.1.351.3 | 0.001753 |
ORF3a | 33 | A33S | Gca | Tca | 2 | 2 | B.1.400 | 0.000858 |
ORF3a | 33 | A33V | gCa | gTa | 2 | 2 | B.1.429 | 0.000047 |
ORF3a | 33 | A33S | Gca | Tca | 2 | 2 | B.1.459 | 0.008163 |
ORF3a | 33 | A33S | Gca | Tca | 2 | 2 | B.1.558 | 0.009132 |
ORF3a | 33 | A33V | gCa | gTa | 2 | 2 | B.1.575 | 0.000607 |
ORF3a | 33 | A33E | gCa | gAa | 2 | 2 | B.1.596 | 0.000174 |
ORF3a | 33 | A33S | Gca | Tca | 2 | 2 | B.1.609 | 0.000959 |
ORF3a | 33 | A33V | gCa | gTa | 2 | 2 | B.1.631 | 0.006734 |
ORF3a | 33 | A33S | Gca | Tca | 2 | 2 | B.6 | 0.00182 |
ORF3a | 33 | A33S | Gca | Tca | 2 | 2 | C.1.2 | 0.008511 |
ORF3a | 33 | A33S | Gca | Tca | 2 | 2 | C.35 | 0.001548 |
ORF3a | 33 | A33V | gCa | gTa | 2 | 2 | P.1 | 0.000032 |
ORF3a | 33 | A33del | GCA | --- | 2 | 2 | P.1 | 0.000032 |
ORF3a | 33 | A33S | Gca | Tca | 2 | 2 | P.1.1 | 0.000635 |
ORF3a | 33 | A33S | Gca | Tca | 2 | 2 | P.1.16 | 0.000748 |
ORF3a | 33 | A33S | Gca | Tca | 2 | 2 | P.1.2 | 0.002312 |
ORF3a | 33 | A33E | gCa | gAa | 2 | 2 | P.2 | 0.000373 |
ORF3a | 33 | A33S | Gca | Tca | 2 | 2 | P.3 | 0.00319 |
ORF3a | 33 | A33S | Gca | Tca | 2 | 2 | Q.4 | 0.00091 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | A.23.1 | 0.000704 |
ORF3a | 33 | A33Q | GCa | CAa | 1 | 1 | All | 0 |
ORF3a | 33 | A33K | GCa | AAa | 1 | 1 | All | 0 |
ORF3a | 33 | A33T | Gca | Aca | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 33 | A33del | GCA | --- | 1 | 1 | AY.103 | 0.000006 |
ORF3a | 33 | A33E | gCa | gAa | 1 | 1 | AY.109 | 0.00074 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | AY.11 | 0.001339 |
ORF3a | 33 | A33del | GCA | --- | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | AY.114 | 0.000231 |
ORF3a | 33 | A33E | gCa | gAa | 1 | 1 | AY.116 | 0.000287 |
ORF3a | 33 | A33T | Gca | Aca | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | AY.12 | 0.000316 |
ORF3a | 33 | A33del | GCA | --- | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 33 | A33T | Gca | Aca | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 33 | A33A | gcA | gcT | 1 | 1 | AY.121 | 0.000135 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | AY.16.1 | 0.00047 |
ORF3a | 33 | A33del | GCA | --- | 1 | 1 | AY.19 | 0.00114 |
ORF3a | 33 | A33E | gCa | gAa | 1 | 1 | AY.2 | 0.000356 |
ORF3a | 33 | A33T | Gca | Aca | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 33 | A33del | GCA | --- | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 33 | A33A | gcA | gcT | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | AY.24 | 0.000431 |
ORF3a | 33 | A33A | gcA | gcT | 1 | 1 | AY.24 | 0.000431 |
ORF3a | 33 | A33V | gCa | gTa | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 33 | A33V | gCa | gTa | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 33 | A33E | gCa | gAa | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 33 | A33del | GCA | --- | 1 | 1 | AY.29.1 | 0.000221 |
ORF3a | 33 | A33T | Gca | Aca | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 33 | A33P | Gca | Cca | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 33 | A33del | GCA | --- | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 33 | A33P | Gca | Cca | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | AY.32 | 0.000532 |
ORF3a | 33 | A33del | GCA | --- | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 33 | A33V | gCa | gTa | 1 | 1 | AY.34 | 0.000097 |
ORF3a | 33 | A33V | gCa | gTa | 1 | 1 | AY.34.1 | 0.00051 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | AY.37 | 0.000316 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | AY.38 | 0.000499 |
ORF3a | 33 | A33del | GCA | --- | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 33 | A33del | GCA | --- | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 33 | A33T | Gca | Aca | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 33 | A33del | GCA | --- | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 33 | A33T | Gca | Aca | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 33 | A33P | Gca | Cca | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 33 | A33E | gCa | gAa | 1 | 1 | AY.45 | 0.000122 |
ORF3a | 33 | A33T | Gca | Aca | 1 | 1 | AY.45 | 0.000122 |
ORF3a | 33 | A33del | GCA | --- | 1 | 1 | AY.45 | 0.000122 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | AY.46.2 | 0.000635 |
ORF3a | 33 | A33del | GCA | --- | 1 | 1 | AY.5 | 0.000021 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | AY.53 | 0.000288 |
ORF3a | 33 | A33A | gcA | gcT | 1 | 1 | AY.55 | 0.000917 |
ORF3a | 33 | A33P | Gca | Cca | 1 | 1 | AY.56 | 0.001605 |
ORF3a | 33 | A33T | Gca | Aca | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 33 | A33del | GCA | --- | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 33 | A33T | Gca | Aca | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | AY.63 | 0.000387 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | AY.66 | 0.00107 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | AY.69 | 0.000187 |
ORF3a | 33 | A33A | gcA | gcG | 1 | 1 | AY.7.1 | 0.000113 |
ORF3a | 33 | A33del | GCA | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF3a | 33 | A33E | gCa | gAa | 1 | 1 | AY.75.1 | 0.00018 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | AY.8 | 0.000606 |
ORF3a | 33 | A33A | gcA | gcT | 1 | 1 | AY.84 | 0.000437 |
ORF3a | 33 | A33A | gcA | gcT | 1 | 1 | AY.85 | 0.000427 |
ORF3a | 33 | A33A | gcA | gcG | 1 | 1 | AY.90 | 0.000684 |
ORF3a | 33 | A33T | Gca | Aca | 1 | 1 | AY.91.1 | 0.004065 |
ORF3a | 33 | A33A | gcA | gcT | 1 | 1 | AY.92 | 0.000287 |
ORF3a | 33 | A33E | gCa | gAa | 1 | 1 | AY.95 | 0.000761 |
ORF3a | 33 | A33V | gCa | gTa | 1 | 1 | AY.98 | 0.000079 |
ORF3a | 33 | A33E | gCa | gAa | 1 | 1 | AY.98 | 0.000079 |
ORF3a | 33 | A33T | Gca | Aca | 1 | 1 | AY.98 | 0.000079 |
ORF3a | 33 | A33del | GCA | --- | 1 | 1 | AY.99 | 0.001049 |
ORF3a | 33 | A33A | gcA | gcT | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | AZ.1 | 0.000867 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | AZ.2 | 0.000821 |
ORF3a | 33 | A33E | gCa | gAa | 1 | 1 | B | 0.000128 |
ORF3a | 33 | A33A | gcA | gcT | 1 | 1 | B | 0.000128 |
ORF3a | 33 | A33P | Gca | Cca | 1 | 1 | B.1 | 0.000009 |
ORF3a | 33 | A33del | GCA | --- | 1 | 1 | B.1 | 0.000009 |
ORF3a | 33 | A33K | GCa | AAa | 1 | 1 | B.1 | 0.000009 |
ORF3a | 33 | A33Q | GCa | CAa | 1 | 1 | B.1 | 0.000009 |
ORF3a | 33 | A33P | Gca | Cca | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 33 | A33E | gCa | gAa | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 33 | A33V | gCa | gTa | 1 | 1 | B.1.1.1 | 0.000327 |
ORF3a | 33 | A33del | GCA | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | B.1.1.159 | 0.004673 |
ORF3a | 33 | A33del | GCA | --- | 1 | 1 | B.1.1.189 | 0.001513 |
ORF3a | 33 | A33A | gcA | gcT | 1 | 1 | B.1.1.191 | 0.004762 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | B.1.1.204 | 0.00304 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | B.1.1.209 | 0.008929 |
ORF3a | 33 | A33E | gCa | gAa | 1 | 1 | B.1.1.214 | 0.000055 |
ORF3a | 33 | A33V | gCa | gTa | 1 | 1 | B.1.1.214 | 0.000055 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | B.1.1.25 | 0.000569 |
ORF3a | 33 | A33E | gCa | gAa | 1 | 1 | B.1.1.28 | 0.000311 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | B.1.1.294 | 0.001266 |
ORF3a | 33 | A33del | GCA | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | B.1.1.369 | 0.000446 |
ORF3a | 33 | A33A | gcA | gcG | 1 | 1 | B.1.1.372 | 0.000689 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | B.1.1.39 | 0.00051 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | B.1.1.404 | 0.015873 |
ORF3a | 33 | A33del | GCA | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | B.1.1.416 | 0.000905 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | B.1.1.419 | 0.007407 |
ORF3a | 33 | A33V | gCa | gTa | 1 | 1 | B.1.1.445 | 0.037037 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | B.1.1.453 | 0.008475 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | B.1.1.47 | 0.005348 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | B.1.1.50 | 0.000679 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | B.1.1.507 | 0.008696 |
ORF3a | 33 | A33A | gcA | gcT | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 33 | A33A | gcA | gcG | 1 | 1 | B.1.1.70 | 0.000341 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | B.1.157 | 0.002985 |
ORF3a | 33 | A33P | Gca | Cca | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 33 | A33T | Gca | Aca | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 33 | A33E | gCa | gAa | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | B.1.160.28 | 0.002924 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | B.1.170 | 0.00431 |
ORF3a | 33 | A33V | gCa | gTa | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | B.1.177.21 | 0.000076 |
ORF3a | 33 | A33del | GCA | --- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | B.1.177.44 | 0.000519 |
ORF3a | 33 | A33del | GCA | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | B.1.177.73 | 0.000566 |
ORF3a | 33 | A33V | gCa | gTa | 1 | 1 | B.1.177.79 | 0.002342 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | B.1.177.79 | 0.002342 |
ORF3a | 33 | A33del | GCA | --- | 1 | 1 | B.1.214.2 | 0.0006 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | B.1.240.1 | 0.025 |
ORF3a | 33 | A33del | GCA | --- | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 33 | A33del | GCA | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 33 | A33A | gcA | gcG | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | B.1.258.14 | 0.00098 |
ORF3a | 33 | A33E | gCa | gAa | 1 | 1 | B.1.265 | 0.001271 |
ORF3a | 33 | A33E | gCa | gAa | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 33 | A33P | Gca | Cca | 1 | 1 | B.1.36 | 0.000146 |
ORF3a | 33 | A33E | gCa | gAa | 1 | 1 | B.1.36 | 0.000146 |
ORF3a | 33 | A33V | gCa | gTa | 1 | 1 | B.1.36.16 | 0.001425 |
ORF3a | 33 | A33del | GCA | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | B.1.36.29 | 0.000517 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | B.1.395 | 0.007042 |
ORF3a | 33 | A33A | gcA | gcT | 1 | 1 | B.1.402 | 0.009804 |
ORF3a | 33 | A33E | gCa | gAa | 1 | 1 | B.1.427 | 0.00005 |
ORF3a | 33 | A33A | gcA | gcT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | B.1.438.1 | 0.000107 |
ORF3a | 33 | A33V | gCa | gTa | 1 | 1 | B.1.466.2 | 0.000391 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | B.1.475 | 0.142857 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | B.1.480 | 0.002488 |
ORF3a | 33 | A33V | gCa | gTa | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 33 | A33V | gCa | gTa | 1 | 1 | B.1.526 | 0.000024 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | B.1.527 | 0.003704 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | B.1.560 | 0.00463 |
ORF3a | 33 | A33A | gcA | gcG | 1 | 1 | B.1.568 | 0.001111 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | B.1.574 | 0.002151 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | B.1.580 | 0.004065 |
ORF3a | 33 | A33E | gCa | gAa | 1 | 1 | B.1.602 | 0.006536 |
ORF3a | 33 | A33E | gCa | gAa | 1 | 1 | B.1.609 | 0.000479 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | B.1.617.3 | 0.002985 |
ORF3a | 33 | A33T | Gca | Aca | 1 | 1 | B.1.617.3 | 0.002985 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | B.1.619.1 | 0.000641 |
ORF3a | 33 | A33T | Gca | Aca | 1 | 1 | B.1.621 | 0.000089 |
ORF3a | 33 | A33E | gCa | gAa | 1 | 1 | B.1.637 | 0.000073 |
ORF3a | 33 | A33A | gcA | gcG | 1 | 1 | B.1.637 | 0.000073 |
ORF3a | 33 | A33del1 | Gca | -ca | 1 | 1 | B.1.637 | 0.000073 |
ORF3a | 33 | A33del | GCA | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | B.1.9.5 | 0.005682 |
ORF3a | 33 | A33V | gCa | gTa | 1 | 1 | B.40 | 0.000364 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | C.18 | 0.002591 |
ORF3a | 33 | A33T | Gca | Aca | 1 | 1 | C.37 | 0.000116 |
ORF3a | 33 | A33E | gCa | gAa | 1 | 1 | C.37 | 0.000116 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | D.2 | 0.000075 |
ORF3a | 33 | A33E | gCa | gAa | 1 | 1 | N.10 | 0.029412 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | N.4 | 0.004255 |
ORF3a | 33 | A33P | Gca | Cca | 1 | 1 | P.1 | 0.000016 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | P.1.12 | 0.000484 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | P.1.13 | 0.000898 |
ORF3a | 33 | A33del | GCA | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 33 | A33P | Gca | Cca | 1 | 1 | P.1.17 | 0.000162 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | P.1.8 | 0.004785 |
ORF3a | 33 | A33A | gcA | gcT | 1 | 1 | P.6 | 0.003145 |
ORF3a | 33 | A33E | gCa | gAa | 1 | 1 | Q.1 | 0.000126 |
ORF3a | 33 | A33A | gcA | gcT | 1 | 1 | Q.2 | 0.000613 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | Q.7 | 0.001111 |
ORF3a | 33 | A33del | GCA | --- | 1 | 1 | Q.8 | 0.000165 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | R.1 | 0.00009 |
ORF3a | 33 | A33S | Gca | Tca | 1 | 1 | W.3 | 0.005263 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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