CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 28

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a28F28deldelTTT---20692069125474-25476
ORF3a28F28LnonsynttTttA7464640.62198425474-25476
ORF3a28F28LnonsynTttCtt7462560.34316425474-25476
ORF3a28F28LnonsynttTttG746230.030831125474-25476
ORF3a28F28LnonsynTtTCtC74620.0026809725474-25476
ORF3a28F28LnonsynTtTCtA74610.0013404825474-25476
ORF3a28F28SnonsyntTttCt267267125474-25476
ORF3a28F28FsynttTttC240240125474-25476
ORF3a28F28InonsynTttAtt4747125474-25476
ORF3a28F28del2delTTt--t45430.95555625474-25476
ORF3a28F28del2deltTTt--4510.022222225474-25476
ORF3a28F28del2delTTT--N4510.022222225474-25476
ORF3a28F28del1delTtt-tt36350.97222225474-25476
ORF3a28F28del1delTTt-Nt3610.027777825474-25476
ORF3a28F28VnonsynTttGtt33310.93939425474-25476
ORF3a28F28VnonsynTtTGtG3320.060606125474-25476
ORF3a28F28YnonsyntTttAt17150.88235325474-25476
ORF3a28F28YnonsyntTTtAC1720.11764725474-25476
ORF3a28F28CnonsyntTttGt1010125474-25476
ORF3a28F28GnonsynTTtGGt77125474-25476
ORF3a28F28HnonsynTTtCAt420.525474-25476
ORF3a28F28HnonsynTTTCAC420.525474-25476
ORF3a28F28PnonsynTTtCCt320.66666725474-25476
ORF3a28F28PnonsynTTTCCC310.33333325474-25476

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a28F28delTTT---20692069All0.000396
ORF3a28F28delTTT---12331233B.1.214.20.739209
ORF3a28F28LttTttA464746All0.000089
ORF3a28F28LTttCtt256746All0.000049
ORF3a28F28LttTttG23746All0.000004
ORF3a28F28LTtTCtC2746All0
ORF3a28F28LTtTCtA1746All0
ORF3a28F28LttTttA274281B.1.10.004971
ORF3a28F28LTttCtt7281B.1.10.000127
ORF3a28F28StTttCt267267All0.000051
ORF3a28F28FttTttC240240All0.000046
ORF3a28F28delTTT---216216AY.490.690096
ORF3a28F28StTttCt207207B.1.1.70.000185
ORF3a28F28LTttCtt133157B.1.1.70.000119
ORF3a28F28LttTttG17157B.1.1.70.000015
ORF3a28F28LttTttA7157B.1.1.70.000006
ORF3a28F28delTTT---105105B.1.617.30.313433
ORF3a28F28FttTttC7171AY.39.10.002813
ORF3a28F28delTTT---5454AY.40.000084
ORF3a28F28LttTttA5454B.1.1.5220.931034
ORF3a28F28ITttAtt4747All0.000009
ORF3a28F28del2TTt--t4345All0.000008
ORF3a28F28del2tTTt--145All0
ORF3a28F28del2TTT--N145All0
ORF3a28F28del1Ttt-tt3536All0.000007
ORF3a28F28del1TTt-Nt136All0
ORF3a28F28delTTT---3636B.1.1.70.000032
ORF3a28F28FttTttC3535AY.40.000054
ORF3a28F28LttTttA3535AY.4.40.014321
ORF3a28F28FttTttC3535B.1.1.70.000031
ORF3a28F28VTttGtt3133All0.000006
ORF3a28F28VTtTGtG233All0
ORF3a28F28delTTT---3030AY.250.00018
ORF3a28F28del2TTt--t2929B.1.214.20.017386
ORF3a28F28FttTttC2929B.1.617.20.000109
ORF3a28F28delTTT---2727AY.1190.000953
ORF3a28F28delTTT---2424B.1.10.000435
ORF3a28F28delTTT---2121AY.46.20.013342
ORF3a28F28delTTT---2020B.10.000183
ORF3a28F28LTttCtt1819AY.470.00056
ORF3a28F28LttTttA119AY.470.000031
ORF3a28F28StTttCt1818B.1.10.000327
ORF3a28F28LttTttA918B.1.617.20.000034
ORF3a28F28LTttCtt918B.1.617.20.000034
ORF3a28F28YtTttAt1517All0.000003
ORF3a28F28YtTTtAC217All0
ORF3a28F28delTTT---1515B.1.617.20.000056
ORF3a28F28delTTT---1414AY.290.000221
ORF3a28F28LttTttA1314AY.40.00002
ORF3a28F28LTttCtt114AY.40.000002
ORF3a28F28delTTT---1414AY.440.000085
ORF3a28F28delTTT---1313AY.1030.000081
ORF3a28F28delTTT---1313AY.1140.003004
ORF3a28F28delTTT---1313AY.30.000129
ORF3a28F28delTTT---1313AY.430.000058
ORF3a28F28delTTT---1313AY.450.001582
ORF3a28F28VTttGtt1313B.1.1.70.000012
ORF3a28F28delTTT---1313P.10.000205
ORF3a28F28ITttAtt1212B.1.1.70.000011
ORF3a28F28FttTttC1111AY.850.004699
ORF3a28F28ITttAtt1111B.1.1460.04661
ORF3a28F28del1Ttt-tt1111P.1.10.003494
ORF3a28F28CtTttGt1010All0.000002
ORF3a28F28delTTT---1010AY.3.10.000853
ORF3a28F28delTTT---99B.1.2100.01919
ORF3a28F28delTTT---99B.1.6390.195652
ORF3a28F28LTttCtt88AY.1030.00005
ORF3a28F28ITttAtt88AY.30.00008
ORF3a28F28delTTT---88AY.4.20.000174
ORF3a28F28FttTttC88AY.430.000035
ORF3a28F28LttTttA68AY.430.000027
ORF3a28F28LTttCtt28AY.430.000009
ORF3a28F28LttTttA88B.1.1.2240.114286
ORF3a28F28LttTttA88B.1.2580.000532
ORF3a28F28LTttCtt68P.10.000095
ORF3a28F28LttTttA28P.10.000032
ORF3a28F28GTTtGGt77All0.000001
ORF3a28F28delTTT---77AY.390.000173
ORF3a28F28YtTttAt77AY.430.000031
ORF3a28F28FttTttC77AY.630.002708
ORF3a28F28delTTT---77B.1.214.10.14
ORF3a28F28delTTT---66AY.230.000418
ORF3a28F28ITttAtt66B.10.000055
ORF3a28F28LTttCtt36B.10.000027
ORF3a28F28LttTttA26B.10.000018
ORF3a28F28LttTttG16B.10.000009
ORF3a28F28del1Ttt-tt66B.1.1.70.000005
ORF3a28F28delTTT---66B.1.1770.000079
ORF3a28F28GTTtGGt66B.1.214.20.003597
ORF3a28F28LttTttA66B.1.6370.000438
ORF3a28F28StTttCt55AY.40.000008
ORF3a28F28delTTT---55B.1.214.30.035714
ORF3a28F28LttTttA55B.1.4270.000252
ORF3a28F28YtTTtAC240.111111
ORF3a28F28HTTTCAC240.111111
ORF3a28F28HTTtCAt240.111111
ORF3a28F28LTttCtt240.111111
ORF3a28F28YtTttAt240.111111
ORF3a28F28LTtTCtC240.111111
ORF3a28F28HTTTCAC24All0
ORF3a28F28HTTtCAt24All0
ORF3a28F28LTttCtt44AY.1000.000184
ORF3a28F28FttTttC44AY.250.000024
ORF3a28F28delTTT---44AY.4.50.00043
ORF3a28F28LTttCtt44AY.46.40.000658
ORF3a28F28delTTT---44AY.50.000083
ORF3a28F28del2TTt--t44AY.50.000083
ORF3a28F28delTTT---44AY.5.30.00135
ORF3a28F28delTTT---44AY.99.20.000369
ORF3a28F28del1Ttt-tt44B.1.10.000073
ORF3a28F28LttTttA44B.1.1.2140.000222
ORF3a28F28LTttCtt24B.1.1600.000062
ORF3a28F28LttTttA24B.1.1600.000062
ORF3a28F28LTttCtt44B.1.160.100.032258
ORF3a28F28FttTttC44B.1.1770.000053
ORF3a28F28LTttCtt44B.1.1770.000053
ORF3a28F28LTttCtt44B.1.20.000035
ORF3a28F28delTTT---44B.1.2140.014652
ORF3a28F28FttTttC44B.1.2320.002149
ORF3a28F28delTTT---44B.1.617.10.000516
ORF3a28F28StTttCt44P.1.170.000647
ORF3a28F28ITttAtt330.166667
ORF3a28F28PTTtCCt23All0
ORF3a28F28PTTTCCC13All0
ORF3a28F28LttTttA23AY.250.000012
ORF3a28F28LTttCtt13AY.250.000006
ORF3a28F28VTttGtt33AY.260.000085
ORF3a28F28delTTT---33AY.330.0002
ORF3a28F28LTttCtt23AY.440.000012
ORF3a28F28LttTttG13AY.440.000006
ORF3a28F28delTTT---33AY.540.000286
ORF3a28F28LttTttA33AY.590.001589
ORF3a28F28LttTttA33AY.60.000123
ORF3a28F28LTttCtt33AY.750.000168
ORF3a28F28delTTT---33AY.880.002653
ORF3a28F28delTTT---33AY.9.20.00011
ORF3a28F28del1Ttt-tt33B.10.000027
ORF3a28F28LTttCtt33B.1.1.3110.001074
ORF3a28F28LTttCtt33B.1.1280.001906
ORF3a28F28FttTttC33B.1.20.000026
ORF3a28F28delTTT---33B.1.2180.015464
ORF3a28F28LTttCtt33B.1.4130.012766
ORF3a28F28LTttCtt33B.1.466.20.001174
ORF3a28F28StTttCt33B.1.4700.004213
ORF3a28F28delTTT---33B.1.6090.001438
ORF3a28F28StTttCt33B.1.617.20.000011
ORF3a28F28delTTT---33Q.10.000379
ORF3a28F28delTTT---33U.30.011583
ORF3a28F28FttTttC220.111111
ORF3a28F28delTTT---22AY.1020.000053
ORF3a28F28del2TTt--t22AY.1020.000053
ORF3a28F28ITttAtt22AY.1030.000012
ORF3a28F28LTttCtt22AY.1130.000285
ORF3a28F28delTTT---22AY.120.000632
ORF3a28F28delTTT---22AY.1200.000074
ORF3a28F28delTTT---22AY.130.000322
ORF3a28F28delTTT---22AY.220.004184
ORF3a28F28delTTT---22AY.260.000057
ORF3a28F28del2TTt--t22AY.30.00002
ORF3a28F28delTTT---22AY.39.10.000079
ORF3a28F28CtTttGt22AY.40.000003
ORF3a28F28FttTttC22AY.410.000588
ORF3a28F28delTTT---22AY.420.00008
ORF3a28F28LttTttA12AY.580.000907
ORF3a28F28LTttCtt12AY.580.000907
ORF3a28F28delTTT---22AY.70.000392
ORF3a28F28LTttCtt22AY.75.10.000361
ORF3a28F28VTttGtt22AY.790.002421
ORF3a28F28delTTT---22AY.810.003984
ORF3a28F28StTttCt22AY.830.003448
ORF3a28F28LttTttA22AY.930.000546
ORF3a28F28VTttGtt12B.10.000009
ORF3a28F28VTtTGtG12B.10.000009
ORF3a28F28FttTttC22B.1.10.000036
ORF3a28F28StTttCt22B.1.1.2770.001517
ORF3a28F28LttTttA22B.1.1.3060.000877
ORF3a28F28LTttCtt22B.1.1.3180.000604
ORF3a28F28LTttCtt22B.1.1.5190.000079
ORF3a28F28CtTttGt22B.1.1.70.000002
ORF3a28F28delTTT---22B.1.160.330.00885
ORF3a28F28delTTT---22B.1.177.830.002963
ORF3a28F28CtTttGt22B.1.214.20.001199
ORF3a28F28del1Ttt-tt12B.1.214.20.0006
ORF3a28F28del1TTt-Nt12B.1.214.20.0006
ORF3a28F28LTttCtt22B.1.2430.000139
ORF3a28F28LttTttA22B.1.4700.002809
ORF3a28F28LttTttA22B.1.5880.00182
ORF3a28F28YtTttAt22B.1.617.20.000008
ORF3a28F28VTttGtt22B.1.617.20.000008
ORF3a28F28StTttCt22B.1.6210.000177
ORF3a28F28FttTttC22D.20.00015
ORF3a28F28StTttCt22Q.80.00033
ORF3a28F28FttTttC11A.2.20.001689
ORF3a28F28LTttCtt11A.2.20.001689
ORF3a28F28delTTT---11A.23.10.000704
ORF3a28F28delTTT---11AY.1000.000046
ORF3a28F28YtTttAt11AY.1020.000027
ORF3a28F28FttTttC11AY.1030.000006
ORF3a28F28StTttCt11AY.1030.000006
ORF3a28F28CtTttGt11AY.1030.000006
ORF3a28F28FttTttC11AY.1100.000113
ORF3a28F28delTTT---11AY.1110.000183
ORF3a28F28VTttGtt11AY.1130.000142
ORF3a28F28ITttAtt11AY.1140.000231
ORF3a28F28LttTttG11AY.1170.000085
ORF3a28F28delTTT---11AY.1180.000063
ORF3a28F28del1Ttt-tt11AY.1200.000037
ORF3a28F28FttTttC11AY.1200.000037
ORF3a28F28delTTT---11AY.1210.000135
ORF3a28F28LttTttA11AY.1210.000135
ORF3a28F28FttTttC11AY.130.000161
ORF3a28F28delTTT---11AY.160.00038
ORF3a28F28LttTttA11AY.190.00114
ORF3a28F28delTTT---11AY.190.00114
ORF3a28F28delTTT---11AY.200.000039
ORF3a28F28LTttCtt11AY.200.000039
ORF3a28F28FttTttC11AY.230.00007
ORF3a28F28LttTttA11AY.230.00007
ORF3a28F28del1Ttt-tt11AY.250.000006
ORF3a28F28FttTttC11AY.260.000028
ORF3a28F28del1Ttt-tt11AY.30.00001
ORF3a28F28LTttCtt11AY.30.00001
ORF3a28F28FttTttC11AY.30.00001
ORF3a28F28LttTttA11AY.320.000532
ORF3a28F28delTTT---11AY.340.000097
ORF3a28F28del1Ttt-tt11AY.340.000097
ORF3a28F28FttTttC11AY.340.000097
ORF3a28F28FttTttC11AY.360.000148
ORF3a28F28delTTT---11AY.370.000316
ORF3a28F28StTttCt11AY.390.000025
ORF3a28F28FttTttC11AY.390.000025
ORF3a28F28del1Ttt-tt11AY.390.000025
ORF3a28F28del2TTt--t11AY.40.000002
ORF3a28F28del1Ttt-tt11AY.40.000002
ORF3a28F28delTTT---11AY.4.2.10.000149
ORF3a28F28FttTttC11AY.420.00004
ORF3a28F28LTttCtt11AY.420.00004
ORF3a28F28PTTtCCt11AY.430.000004
ORF3a28F28StTttCt11AY.430.000004
ORF3a28F28VTttGtt11AY.430.000004
ORF3a28F28YtTttAt11AY.440.000006
ORF3a28F28del2TTt--t11AY.440.000006
ORF3a28F28VTttGtt11AY.440.000006
ORF3a28F28FttTttC11AY.440.000006
ORF3a28F28StTttCt11AY.440.000006
ORF3a28F28YtTttAt11AY.460.000104
ORF3a28F28StTttCt11AY.460.000104
ORF3a28F28delTTT---11AY.460.000104
ORF3a28F28VTttGtt11AY.46.20.000635
ORF3a28F28LttTttG11AY.46.20.000635
ORF3a28F28delTTT---11AY.470.000031
ORF3a28F28ITttAtt11AY.470.000031
ORF3a28F28LttTttA11AY.5.30.000337
ORF3a28F28LTttCtt11AY.5.40.000277
ORF3a28F28del2TTt--t11AY.540.000095
ORF3a28F28delTTT---11AY.590.00053
ORF3a28F28StTttCt11AY.590.00053
ORF3a28F28del2TTt--t11AY.60.000041
ORF3a28F28delTTT---11AY.60.000041
ORF3a28F28delTTT---11AY.650.000533
ORF3a28F28FttTttC11AY.650.000533
ORF3a28F28delTTT---11AY.680.000274
ORF3a28F28FttTttC11AY.740.000116
ORF3a28F28VTttGtt11AY.750.000056
ORF3a28F28delTTT---11AY.750.000056
ORF3a28F28VTttGtt11AY.770.001127
ORF3a28F28LttTttA11AY.880.000884
ORF3a28F28LTttCtt11AY.9.20.000037
ORF3a28F28FttTttC11AY.920.000287
ORF3a28F28LTttCtt11AY.980.000079
ORF3a28F28delTTT---11AY.990.001049
ORF3a28F28LTtTCtA11AY.990.001049
ORF3a28F28delTTT---11B0.000128
ORF3a28F28StTttCt11B.10.000009
ORF3a28F28GTTtGGt11B.10.000009
ORF3a28F28CtTttGt11B.10.000009
ORF3a28F28CtTttGt11B.1.10.000018
ORF3a28F28VTttGtt11B.1.10.000018
ORF3a28F28delTTT---11B.1.1.1390.022727
ORF3a28F28FttTttC11B.1.1.1760.000439
ORF3a28F28delTTT---11B.1.1.1890.001513
ORF3a28F28delTTT---11B.1.1.2160.00089
ORF3a28F28LTttCtt11B.1.1.2160.00089
ORF3a28F28StTttCt11B.1.1.2220.000204
ORF3a28F28StTttCt11B.1.1.3110.000358
ORF3a28F28delTTT---11B.1.1.3110.000358
ORF3a28F28del1Ttt-tt11B.1.1.390.00051
ORF3a28F28delTTT---11B.1.1.4090.002833
ORF3a28F28LttTttA11B.1.1.4220.045455
ORF3a28F28delTTT---11B.1.1.4340.000349
ORF3a28F28del2TTt--t11B.1.1.5280.004808
ORF3a28F28LTttCtt11B.1.1.630.000386
ORF3a28F28del2tTTt--11B.1.1.70.000001
ORF3a28F28PTTTCCC11B.1.1.70.000001
ORF3a28F28StTttCt11B.1.1.890.006061
ORF3a28F28delTTT---11B.1.1530.018868
ORF3a28F28FttTttC11B.1.1600.000031
ORF3a28F28delTTT---11B.1.1600.000031
ORF3a28F28StTttCt11B.1.1770.000013
ORF3a28F28del1Ttt-tt11B.1.1770.000013
ORF3a28F28PTTtCCt11B.1.1770.000013
ORF3a28F28del2TTt--t11B.1.177.190.001431
ORF3a28F28delTTT---11B.1.177.210.000076
ORF3a28F28CtTttGt11B.1.177.210.000076
ORF3a28F28LTttCtt11B.1.177.440.000519
ORF3a28F28LTttCtt11B.1.177.580.001332
ORF3a28F28delTTT---11B.1.177.60.000977
ORF3a28F28del1Ttt-tt11B.1.177.80.000752
ORF3a28F28LttTttA11B.1.177.870.000728
ORF3a28F28StTttCt11B.1.177.870.000728
ORF3a28F28delTTT---11B.1.1790.003759
ORF3a28F28StTttCt11B.1.20.000009
ORF3a28F28VTttGtt11B.1.20.000009
ORF3a28F28StTttCt11B.1.2060.000816
ORF3a28F28VTttGtt11B.1.214.20.0006
ORF3a28F28del2TTT--N11B.1.2180.005155
ORF3a28F28LttTttA11B.1.2210.000071
ORF3a28F28del1Ttt-tt11B.1.2210.000071
ORF3a28F28StTttCt11B.1.2320.000537
ORF3a28F28StTttCt11B.1.2390.001221
ORF3a28F28delTTT---11B.1.2430.00007
ORF3a28F28delTTT---11B.1.2580.000067
ORF3a28F28YtTttAt11B.1.258.170.000104
ORF3a28F28LTttCtt11B.1.258.50.008772
ORF3a28F28LTttCtt11B.1.2980.002114
ORF3a28F28LttTttG11B.1.36.170.000494
ORF3a28F28FttTttC11B.1.36.180.00042
ORF3a28F28delTTT---11B.1.36.180.00042
ORF3a28F28LTttCtt11B.1.3610.001289
ORF3a28F28delTTT---11B.1.3890.001002
ORF3a28F28FttTttC11B.1.4130.004255
ORF3a28F28StTttCt11B.1.4270.00005
ORF3a28F28delTTT---11B.1.4270.00005
ORF3a28F28delTTT---11B.1.4590.004082
ORF3a28F28ITttAtt11B.1.5880.00091
ORF3a28F28ITttAtt11B.1.617.10.000129
ORF3a28F28LttTttA11B.1.617.10.000129
ORF3a28F28VTtTGtG11B.1.617.30.002985
ORF3a28F28delTTT---11B.1.6190.000871
ORF3a28F28LTttCtt11B.1.6210.000089
ORF3a28F28delTTT---11B.1.6380.052632
ORF3a28F28FttTttC11B.1.780.008547
ORF3a28F28delTTT---11B.550.00295
ORF3a28F28LTttCtt11B.60.00091
ORF3a28F28LttTttA11C.140.004329
ORF3a28F28delTTT---11C.160.00106
ORF3a28F28VTttGtt11C.370.000116
ORF3a28F28delTTT---11D.20.000075
ORF3a28F28ITttAtt11P.1.10.000318
ORF3a28F28delTTT---11P.1.150.000232
ORF3a28F28StTttCt11P.1.150.000232
ORF3a28F28LttTttG11Q.80.000165
ORF3a28F28StTttCt11R.10.00009