CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 273 & Codon = gtT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a273V273VsyngtGgtT658764610.98087126209-26211

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a273V273VgtGgtT64616587All0.001236
ORF3a273V273VgtGgtT13191319B.1.619.10.846055
ORF3a273V273VgtGgtT11601164AY.250.006977
ORF3a273V273VgtGgtT10601060B.1.6190.923345
ORF3a273V273VgtGgtT537552B.1.20.004728
ORF3a273V273VgtGgtT220228AY.40.000342
ORF3a273V273VgtGgtT208208AY.430.000922
ORF3a273V273VgtGgtT203203B.1.1.250.115406
ORF3a273V273VgtGgtT191191D.50.950249
ORF3a273V273VgtGgtT179190B.1.1.70.00016
ORF3a273V273VgtGgtT152152AT.10.779487
ORF3a273V273VgtGgtT127127B.1.1.2940.160759
ORF3a273V273VgtGgtT8590B.1.617.20.00032
ORF3a273V273VgtGgtT7074B.1.10.00127
ORF3a273V273VgtGgtT6770B.10.000614
ORF3a273V273VgtGgtT5757B.1.1.4040.904762
ORF3a273V273VgtGgtT3338AY.440.000201
ORF3a273V273VgtGgtT3333B.1.1.500.022403
ORF3a273V273VgtGgtT3232B.1.1.5190.001271
ORF3a273V273VgtGgtT2929B.1.1770.000382
ORF3a273V273VgtGgtT2328AY.1030.000143
ORF3a273V273VgtGgtT2727B.1.1.280.008403
ORF3a273V273VgtGgtT2525A.40.320513
ORF3a273V273VgtGgtT2525B.1.1.2220.0051
ORF3a273V273VgtGgtT2222AY.50.000454
ORF3a273V273VgtGgtT2121B.1.177.40.004432
ORF3a273V273VgtGgtT1819AY.1020.000477
ORF3a273V273VgtGgtT1418P.10.000221
ORF3a273V273VgtGgtT1717B.1.1990.070248
ORF3a273V273VgtGgtT1616B.1.1600.000499
ORF3a273V273VgtGgtT1515D.41
ORF3a273V273VgtGgtT1214AY.30.000119
ORF3a273V273VgtGgtT1313AY.340.001261
ORF3a273V273VgtGgtT1313AY.980.001027
ORF3a273V273VgtGgtT1313B.1.4290.000306
ORF3a273V273VgtGgtT1212AY.740.001388
ORF3a273V273VgtGgtT1111AY.380.005492
ORF3a273V273VgtGgtT1111AY.420.000443
ORF3a273V273VgtGgtT1111B0.001406
ORF3a273V273VgtGgtT1111B.1.1.1210.026699
ORF3a273V273VgtGgtT1111B.1.1.4340.003834
ORF3a273V273VgtGgtT511B.1.2430.000348
ORF3a273V273VgtGgtT1010C.370.001161
ORF3a273V273VgtGgtT99AY.4.20.000195
ORF3a273V273VgtGgtT89AY.9.20.000294
ORF3a273V273VgtGgtT88A.2.50.003992
ORF3a273V273VgtGgtT78AY.1000.000322
ORF3a273V273VgtGgtT48AY.1200.000149
ORF3a273V273VgtGgtT77AY.390.000173
ORF3a273V273VgtGgtT67AY.46.40.000987
ORF3a273V273VgtGgtT77AY.60.000288
ORF3a273V273VgtGgtT77B.1.1.470.037433
ORF3a273V273VgtGgtT77B.1.177.720.023729
ORF3a273V273VgtGgtT57B.1.177.810.000947
ORF3a273V273VgtGgtT77B.1.5610.002779
ORF3a273V273VgtGgtT66AY.540.000572
ORF3a273V273VgtGgtT66B.1.1.390.003058
ORF3a273V273VgtGgtT66B.1.351.50.003597
ORF3a273V273VgtGgtT66B.1.438.10.000644
ORF3a273V273VgtGgtT56B.1.5960.000436
ORF3a273V273VgtGgtT55AY.1170.000423
ORF3a273V273VgtGgtT45AY.1190.000141
ORF3a273V273VgtGgtT45AY.200.000155
ORF3a273V273VgtGgtT55AY.350.001165
ORF3a273V273VgtGgtT45AY.470.000124
ORF3a273V273VgtGgtT55B.1.2580.000333
ORF3a273V273VgtGgtT55B.1.3510.000149
ORF3a273V273VgtGgtT44AY.330.000267
ORF3a273V273VgtGgtT44B.1.1.3030.01105
ORF3a273V273VgtGgtT44B.1.1.3060.001754
ORF3a273V273VgtGgtT44B.1.360.000584
ORF3a273V273VgtGgtT44B.1.4270.000202
ORF3a273V273VgtGgtT23A.20.001324
ORF3a273V273VgtGgtT33A.2.40.010101
ORF3a273V273VgtGgtT33AY.100.00159
ORF3a273V273VgtGgtT33AY.120.2.10.001495
ORF3a273V273VgtGgtT33AY.140.000264
ORF3a273V273VgtGgtT33AY.260.000085
ORF3a273V273VgtGgtT33AY.290.000047
ORF3a273V273VgtGgtT23AY.4.2.10.000298
ORF3a273V273VgtGgtT33AY.450.000365
ORF3a273V273VgtGgtT33AY.5.40.00083
ORF3a273V273VgtGgtT33AY.530.000863
ORF3a273V273VgtGgtT33AY.75.10.000541
ORF3a273V273VgtGgtT33AY.90.000203
ORF3a273V273VgtGgtT33AY.920.000862
ORF3a273V273VgtGgtT33AY.98.10.000145
ORF3a273V273VgtGgtT33B.1.1.2040.009119
ORF3a273V273VgtGgtT33B.1.1.2160.002671
ORF3a273V273VgtGgtT33B.1.1.2200.005576
ORF3a273V273VgtGgtT33B.1.2340.000396
ORF3a273V273VgtGgtT33B.1.466.20.001174
ORF3a273V273VgtGgtT13B.1.5250.000113
ORF3a273V273VgtGgtT220.111111
ORF3a273V273VgtGgtT22A0.000774
ORF3a273V273VgtGgtT22A.10.000564
ORF3a273V273VgtGgtT22AY.1090.001479
ORF3a273V273VgtGgtT22AY.116.10.000623
ORF3a273V273VgtGgtT22AY.120.000632
ORF3a273V273VgtGgtT22AY.120.10.000642
ORF3a273V273VgtGgtT22AY.1210.000271
ORF3a273V273VgtGgtT12AY.360.000148
ORF3a273V273VgtGgtT22AY.46.60.000144
ORF3a273V273VgtGgtT12AY.610.000105
ORF3a273V273VgtGgtT22AY.7.20.001119
ORF3a273V273VgtGgtT12AY.750.000056
ORF3a273V273VgtGgtT22AZ.30.00304
ORF3a273V273VgtGgtT22B.1.1.1690.036364
ORF3a273V273VgtGgtT22B.1.1.2140.000111
ORF3a273V273VgtGgtT22B.1.1.3430.041667
ORF3a273V273VgtGgtT22B.1.1.3440.021505
ORF3a273V273VgtGgtT22B.1.1.3700.025316
ORF3a273V273VgtGgtT22B.1.1.750.021277
ORF3a273V273VgtGgtT12B.1.177.440.000519
ORF3a273V273VgtGgtT22B.1.177.620.002384
ORF3a273V273VgtGgtT22B.1.36.380.003284
ORF3a273V273VgtGgtT22B.1.36.80.002
ORF3a273V273VgtGgtT12B.1.3690.000285
ORF3a273V273VgtGgtT22B.1.5260.000047
ORF3a273V273VgtGgtT22B.1.5750.000607
ORF3a273V273VgtGgtT22B.60.00182
ORF3a273V273VgtGgtT22P.1.170.000324
ORF3a273V273VgtGgtT11A.190.009434
ORF3a273V273VgtGgtT11A.90.045455
ORF3a273V273VgtGgtT11AY.10.000396
ORF3a273V273VgtGgtT11AY.1100.000113
ORF3a273V273VgtGgtT11AY.120.20.001285
ORF3a273V273VgtGgtT11AY.230.00007
ORF3a273V273VgtGgtT11AY.270.000065
ORF3a273V273VgtGgtT11AY.3.10.000085
ORF3a273V273VgtGgtT11AY.320.000532
ORF3a273V273VgtGgtT11AY.39.10.00004
ORF3a273V273VgtGgtT11AY.460.000104
ORF3a273V273VgtGgtT11AY.46.30.000934
ORF3a273V273VgtGgtT11AY.590.00053
ORF3a273V273VgtGgtT11AY.680.000274
ORF3a273V273VgtGgtT11AY.700.000209
ORF3a273V273VgtGgtT11AY.720.001361
ORF3a273V273VgtGgtT11AY.80.000606
ORF3a273V273VgtGgtT11B.1.1.1170.009709
ORF3a273V273VgtGgtT11B.1.1.1220.045455
ORF3a273V273VgtGgtT11B.1.1.1380.006061
ORF3a273V273VgtGgtT11B.1.1.1490.016393
ORF3a273V273VgtGgtT11B.1.1.1530.001095
ORF3a273V273VgtGgtT11B.1.1.1740.003378
ORF3a273V273VgtGgtT11B.1.1.2690.001353
ORF3a273V273VgtGgtT11B.1.1.2800.003086
ORF3a273V273VgtGgtT11B.1.1.2840.000107
ORF3a273V273VgtGgtT11B.1.1.2910.000742
ORF3a273V273VgtGgtT11B.1.1.2980.000862
ORF3a273V273VgtGgtT11B.1.1.3150.008475
ORF3a273V273VgtGgtT11B.1.1.3260.001761
ORF3a273V273VgtGgtT11B.1.1.330.000421
ORF3a273V273VgtGgtT11B.1.1.3970.002252
ORF3a273V273VgtGgtT11B.1.1.3980.003226
ORF3a273V273VgtGgtT11B.1.1.4330.001425
ORF3a273V273VgtGgtT11B.1.1.700.000341
ORF3a273V273VgtGgtT11B.1.1.830.00271
ORF3a273V273VgtGgtT11B.1.1340.005464
ORF3a273V273VgtGgtT11B.1.1700.00431
ORF3a273V273VgtGgtT11B.1.177.160.000664
ORF3a273V273VgtGgtT11B.1.177.200.001517
ORF3a273V273VgtGgtT11B.1.177.320.00135
ORF3a273V273VgtGgtT11B.1.177.430.001477
ORF3a273V273VgtGgtT11B.1.177.580.001332
ORF3a273V273VgtGgtT11B.1.177.730.000566
ORF3a273V273VgtGgtT11B.1.177.760.002494
ORF3a273V273VgtGgtT11B.1.2980.002114
ORF3a273V273VgtGgtT11B.1.36.100.004785
ORF3a273V273VgtGgtT11B.1.36.220.001208
ORF3a273V273VgtGgtT11B.1.36.290.000517
ORF3a273V273VgtGgtT11B.1.5240.001406
ORF3a273V273VgtGgtT11B.1.5510.00129
ORF3a273V273VgtGgtT11B.1.5820.000491
ORF3a273V273VgtGgtT11B.1.617.10.000129
ORF3a273V273VgtGgtT11B.1.6270.00202
ORF3a273V273VgtGgtT11B.1.6300.005236
ORF3a273V273VgtGgtT11B.1.690.035714
ORF3a273V273VgtGgtT11B.260.014706
ORF3a273V273VgtGgtT11B.290.003509
ORF3a273V273VgtGgtT11B.30.000831
ORF3a273V273VgtGgtT11B.3.10.001658
ORF3a273V273VgtGgtT11C.160.00106
ORF3a273V273VgtGgtT11D.20.000075
ORF3a273V273VgtGgtT11P.1.140.000048
ORF3a273V273VgtGgtT11P.1.160.000374
ORF3a273V273VgtGgtT11P.20.000187
ORF3a273V273VgtGgtT11Q.40.000455
ORF3a273V273VgtGgtT11Q.70.001111
ORF3a273V273VgtGgtT11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.