CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 273 & Codon = gtC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a273V273VsyngtGgtC6587290.0044026126209-26211

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a273V273VgtGgtC296587All0.000006
ORF3a273V273VgtGgtC31164AY.250.000018
ORF3a273V273VgtGgtC2552B.1.20.000018
ORF3a273V273VgtGgtC4228AY.40.000006
ORF3a273V273VgtGgtC4190B.1.1.70.000004
ORF3a273V273VgtGgtC474B.1.10.000073
ORF3a273V273VgtGgtC170B.10.000009
ORF3a273V273VgtGgtC138AY.440.000006
ORF3a273V273VgtGgtC19AY.9.20.000037
ORF3a273V273VgtGgtC13AY.4.2.10.000149
ORF3a273V273VgtGgtC12AY.610.000105
ORF3a273V273VgtGgtC12B.1.177.440.000519
ORF3a273V273VgtGgtC12B.1.3690.000285
ORF3a273V273VgtGgtC11AY.400.000964
ORF3a273V273VgtGgtC11B.1.1.540.003021
ORF3a273V273VgtGgtC11B.1.177.480.003125
ORF3a273V273VgtGgtC11B.1.220.001318
ORF3a273V273VgtGgtC11B.1.940.027027

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.