CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 273 & Codon = gtA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a273V273VsyngtGgtA6587970.01472626209-26211

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a273V273VgtGgtA976587All0.000019
ORF3a273V273VgtGgtA11164AY.250.000006
ORF3a273V273VgtGgtA13552B.1.20.000114
ORF3a273V273VgtGgtA4228AY.40.000006
ORF3a273V273VgtGgtA7190B.1.1.70.000006
ORF3a273V273VgtGgtA590B.1.617.20.000019
ORF3a273V273VgtGgtA270B.10.000018
ORF3a273V273VgtGgtA438AY.440.000024
ORF3a273V273VgtGgtA528AY.1030.000031
ORF3a273V273VgtGgtA119AY.1020.000027
ORF3a273V273VgtGgtA418P.10.000063
ORF3a273V273VgtGgtA1515AY.1180.00094
ORF3a273V273VgtGgtA214AY.30.00002
ORF3a273V273VgtGgtA611B.1.2430.000418
ORF3a273V273VgtGgtA18AY.1000.000046
ORF3a273V273VgtGgtA48AY.1200.000149
ORF3a273V273VgtGgtA17AY.46.40.000165
ORF3a273V273VgtGgtA27B.1.177.810.000379
ORF3a273V273VgtGgtA16B.1.5960.000087
ORF3a273V273VgtGgtA15AY.1190.000035
ORF3a273V273VgtGgtA15AY.200.000039
ORF3a273V273VgtGgtA15AY.470.000031
ORF3a273V273VgtGgtA13A.20.000662
ORF3a273V273VgtGgtA23B.1.5250.000226
ORF3a273V273VgtGgtA22AY.1070.000932
ORF3a273V273VgtGgtA12AY.360.000148
ORF3a273V273VgtGgtA12AY.750.000056
ORF3a273V273VgtGgtA22B.1.3620.003082
ORF3a273V273VgtGgtA11AY.1010.00049
ORF3a273V273VgtGgtA11AY.710.000475
ORF3a273V273VgtGgtA11AY.9.10.000084
ORF3a273V273VgtGgtA11B.1.1.3110.000358
ORF3a273V273VgtGgtA11B.1.177.210.000076
ORF3a273V273VgtGgtA11B.1.4970.000315
ORF3a273V273VgtGgtA11B.1.5640.000426

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.