CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 273 & Codon = Ctg

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a273V273LnonsynGtgCtg22684810.21208126209-26211

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a273V273LGtgCtg4812268All0.000092
ORF3a273V273LGtgCtg197495AY.40.000307
ORF3a273V273LGtgCtg58202B.1.1.70.000052
ORF3a273V273LGtgCtg20196B.1.617.20.000075
ORF3a273V273LGtgCtg16107AY.430.000071
ORF3a273V273LGtgCtg2103AY.340.000194
ORF3a273V273LGtgCtg2892AY.440.00017
ORF3a273V273LGtgCtg3264AY.1030.000199
ORF3a273V273LGtgCtg1260AY.250.000072
ORF3a273V273LGtgCtg545B.1.20.000044
ORF3a273V273LGtgCtg1340AY.30.000129
ORF3a273V273LGtgCtg326AY.4.20.000065
ORF3a273V273LGtgCtg1826B.1.4290.000424
ORF3a273V273LGtgCtg218B.10.000018
ORF3a273V273LGtgCtg216AY.390.000049
ORF3a273V273LGtgCtg815AY.290.000126
ORF3a273V273LGtgCtg315B.1.4270.000151
ORF3a273V273LGtgCtg114B.1.5960.000087
ORF3a273V273LGtgCtg112AY.1020.000027
ORF3a273V273LGtgCtg112AY.330.000067
ORF3a273V273LGtgCtg112AY.460.000104
ORF3a273V273LGtgCtg212B.1.3510.000059
ORF3a273V273LGtgCtg111B.1.1770.000013
ORF3a273V273LGtgCtg110AY.1000.000046
ORF3a273V273LGtgCtg110AY.4.10.000737
ORF3a273V273LGtgCtg28AY.9.20.000073
ORF3a273V273LGtgCtg67AY.470.000187
ORF3a273V273LGtgCtg16AY.230.00007
ORF3a273V273LGtgCtg16B.1.6210.000089
ORF3a273V273LGtgCtg15AY.1190.000035
ORF3a273V273LGtgCtg35AY.410.000882
ORF3a273V273LGtgCtg15AY.450.000122
ORF3a273V273LGtgCtg15AY.850.000427
ORF3a273V273LGtgCtg35AY.980.000237
ORF3a273V273LGtgCtg14AY.1210.000135
ORF3a273V273LGtgCtg14AY.60.000041
ORF3a273V273LGtgCtg14AY.750.000056
ORF3a273V273LGtgCtg44B.1.80.00789
ORF3a273V273LGtgCtg33AY.1010.001471
ORF3a273V273LGtgCtg23AY.1200.000074
ORF3a273V273LGtgCtg13B.1.2430.00007
ORF3a273V273LGtgCtg12AY.34.10.00051
ORF3a273V273LGtgCtg12AY.7.10.000113
ORF3a273V273LGtgCtg22AZ.10.001735
ORF3a273V273LGtgCtg22B.1.1.2360.013793
ORF3a273V273LGtgCtg12B.1.1.500.000679
ORF3a273V273LGtgCtg22Q.30.00029
ORF3a273V273LGtgCtg11AY.300.000396
ORF3a273V273LGtgCtg11AY.400.000964
ORF3a273V273LGtgCtg11AY.610.000105
ORF3a273V273LGtgCtg11AY.690.000187
ORF3a273V273LGtgCtg11AY.730.000665
ORF3a273V273LGtgCtg11B.1.1.10.000327
ORF3a273V273LGtgCtg11B.1.3850.010638
ORF3a273V273LGtgCtg11B.1.6250.002353
ORF3a273V273LGtgCtg11C.360.000911
ORF3a273V273LGtgCtg11N.50.001767
ORF3a273V273LGtgCtg11P.1.170.000162
ORF3a273V273LGtgCtg11P.30.001595

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.