CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 27 & Codon = gTt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a27D27VnonsyngAtgTt182182125471-25473

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a27D27VgAtgTt182182All0.000035
ORF3a27D27VgAtgTt100100AY.250.000601
ORF3a27D27VgAtgTt2727AY.590.014301
ORF3a27D27VgAtgTt99B.1.1.70.000008
ORF3a27D27VgAtgTt77AY.440.000043
ORF3a27D27VgAtgTt55AY.1030.000031
ORF3a27D27VgAtgTt55AY.40.000008
ORF3a27D27VgAtgTt33AY.140.000264
ORF3a27D27VgAtgTt33B.1.10.000054
ORF3a27D27VgAtgTt22AY.330.000134
ORF3a27D27VgAtgTt22AY.46.60.000144
ORF3a27D27VgAtgTt22B.1.177.570.000562
ORF3a27D27VgAtgTt22B.1.617.20.000008
ORF3a27D27VgAtgTt22P.1.160.000748
ORF3a27D27VgAtgTt11AY.1190.000035
ORF3a27D27VgAtgTt11AY.230.00007
ORF3a27D27VgAtgTt11AY.340.000097
ORF3a27D27VgAtgTt11AY.390.000025
ORF3a27D27VgAtgTt11AY.50.000021
ORF3a27D27VgAtgTt11B.10.000009
ORF3a27D27VgAtgTt11B.1.1280.000635
ORF3a27D27VgAtgTt11B.1.2600.003344
ORF3a27D27VgAtgTt11B.1.3510.00003
ORF3a27D27VgAtgTt11B.1.5750.000303
ORF3a27D27VgAtgTt11B.1.6180.004032
ORF3a27D27VgAtgTt11P.10.000016
ORF3a27D27VgAtgTt11P.30.001595

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.