CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 27 | D27del | del | GAT | --- | 2182 | 2182 | 1 | 25471-25473 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 27 | D27del | GAT | --- | 2182 | 2182 | All | 0.000417 |
ORF3a | 27 | D27del | GAT | --- | 1270 | 1270 | B.1.214.2 | 0.761391 |
ORF3a | 27 | D27del | GAT | --- | 214 | 214 | AY.49 | 0.683706 |
ORF3a | 27 | D27del | GAT | --- | 104 | 104 | B.1.617.3 | 0.310448 |
ORF3a | 27 | D27del | GAT | --- | 86 | 86 | AY.4 | 0.000134 |
ORF3a | 27 | D27del | GAT | --- | 59 | 59 | AY.25 | 0.000355 |
ORF3a | 27 | D27del | GAT | --- | 37 | 37 | B.1.1.7 | 0.000033 |
ORF3a | 27 | D27del | GAT | --- | 31 | 31 | AY.43 | 0.000137 |
ORF3a | 27 | D27del | GAT | --- | 27 | 27 | AY.119 | 0.000953 |
ORF3a | 27 | D27del | GAT | --- | 24 | 24 | B.1.1 | 0.000435 |
ORF3a | 27 | D27del | GAT | --- | 22 | 22 | AY.46.2 | 0.013977 |
ORF3a | 27 | D27del | GAT | --- | 20 | 20 | B.1 | 0.000183 |
ORF3a | 27 | D27del | GAT | --- | 15 | 15 | AY.103 | 0.000093 |
ORF3a | 27 | D27del | GAT | --- | 15 | 15 | AY.3 | 0.000149 |
ORF3a | 27 | D27del | GAT | --- | 15 | 15 | B.1.617.2 | 0.000056 |
ORF3a | 27 | D27del | GAT | --- | 14 | 14 | AY.29 | 0.000221 |
ORF3a | 27 | D27del | GAT | --- | 14 | 14 | AY.44 | 0.000085 |
ORF3a | 27 | D27del | GAT | --- | 13 | 13 | AY.45 | 0.001582 |
ORF3a | 27 | D27del | GAT | --- | 10 | 10 | AY.3.1 | 0.000853 |
ORF3a | 27 | D27del | GAT | --- | 9 | 9 | B.1.210 | 0.01919 |
ORF3a | 27 | D27del | GAT | --- | 9 | 9 | B.1.639 | 0.195652 |
ORF3a | 27 | D27del | GAT | --- | 8 | 8 | AY.23 | 0.000558 |
ORF3a | 27 | D27del | GAT | --- | 8 | 8 | AY.4.2 | 0.000174 |
ORF3a | 27 | D27del | GAT | --- | 8 | 8 | AY.5 | 0.000165 |
ORF3a | 27 | D27del | GAT | --- | 7 | 7 | B.1.214.1 | 0.14 |
ORF3a | 27 | D27del | GAT | --- | 6 | 6 | AY.102 | 0.000159 |
ORF3a | 27 | D27del | GAT | --- | 6 | 6 | AY.26 | 0.00017 |
ORF3a | 27 | D27del | GAT | --- | 6 | 6 | B.1.177 | 0.000079 |
ORF3a | 27 | D27del | GAT | --- | 5 | 5 | AY.39 | 0.000124 |
ORF3a | 27 | D27del | GAT | --- | 5 | 5 | B.1.214.3 | 0.035714 |
ORF3a | 27 | D27del | GAT | --- | 4 | 4 | AY.4.5 | 0.00043 |
ORF3a | 27 | D27del | GAT | --- | 4 | 4 | AY.5.3 | 0.00135 |
ORF3a | 27 | D27del | GAT | --- | 4 | 4 | AY.54 | 0.000381 |
ORF3a | 27 | D27del | GAT | --- | 4 | 4 | AY.99.2 | 0.000369 |
ORF3a | 27 | D27del | GAT | --- | 4 | 4 | B.1.214 | 0.014652 |
ORF3a | 27 | D27del | GAT | --- | 4 | 4 | B.1.218 | 0.020619 |
ORF3a | 27 | D27del | GAT | --- | 4 | 4 | B.1.617.1 | 0.000516 |
ORF3a | 27 | D27del | GAT | --- | 3 | 3 | AY.33 | 0.0002 |
ORF3a | 27 | D27del | GAT | --- | 3 | 3 | AY.47 | 0.000093 |
ORF3a | 27 | D27del | GAT | --- | 3 | 3 | AY.88 | 0.002653 |
ORF3a | 27 | D27del | GAT | --- | 3 | 3 | AY.9.2 | 0.00011 |
ORF3a | 27 | D27del | GAT | --- | 3 | 3 | B.1.609 | 0.001438 |
ORF3a | 27 | D27del | GAT | --- | 3 | 3 | Q.1 | 0.000379 |
ORF3a | 27 | D27del | GAT | --- | 3 | 3 | U.3 | 0.011583 |
ORF3a | 27 | D27del | GAT | --- | 2 | 2 | AY.12 | 0.000632 |
ORF3a | 27 | D27del | GAT | --- | 2 | 2 | AY.120 | 0.000074 |
ORF3a | 27 | D27del | GAT | --- | 2 | 2 | AY.13 | 0.000322 |
ORF3a | 27 | D27del | GAT | --- | 2 | 2 | AY.22 | 0.004184 |
ORF3a | 27 | D27del | GAT | --- | 2 | 2 | AY.39.1 | 0.000079 |
ORF3a | 27 | D27del | GAT | --- | 2 | 2 | AY.42 | 0.00008 |
ORF3a | 27 | D27del | GAT | --- | 2 | 2 | AY.6 | 0.000082 |
ORF3a | 27 | D27del | GAT | --- | 2 | 2 | AY.7 | 0.000392 |
ORF3a | 27 | D27del | GAT | --- | 2 | 2 | AY.79 | 0.002421 |
ORF3a | 27 | D27del | GAT | --- | 2 | 2 | AY.81 | 0.003984 |
ORF3a | 27 | D27del | GAT | --- | 2 | 2 | B.1.177.83 | 0.002963 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | A.23.1 | 0.000704 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | AY.114 | 0.000231 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | AY.121 | 0.000135 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | AY.19 | 0.00114 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | AY.34 | 0.000097 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | AY.37 | 0.000316 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | AY.65 | 0.000533 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | AY.75 | 0.000056 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | B | 0.000128 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | B.1.1.189 | 0.001513 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | B.1.1.216 | 0.00089 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | B.1.1.434 | 0.000349 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | B.1.1.528 | 0.004808 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | B.1.160.33 | 0.004425 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | B.1.177.19 | 0.001431 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | B.1.389 | 0.001002 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | B.1.459 | 0.004082 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | B.1.619 | 0.000871 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | B.55 | 0.00295 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | C.16 | 0.00106 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | D.2 | 0.000075 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | P.1 | 0.000016 |
ORF3a | 27 | D27del | GAT | --- | 1 | 1 | P.1.15 | 0.000232 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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