CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 269

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a269T269MnonsynaCgaTg29902990126197-26199
ORF3a269T269TsynacGacT295219700.66734426197-26199
ORF3a269T269TsynacGacA29528000.27100326197-26199
ORF3a269T269TsynacGacC29521820.061653126197-26199
ORF3a269T269SnonsynAcgTcg21732173126197-26199
ORF3a269T269PnonsynAcgCcg102102126197-26199
ORF3a269T269AnonsynAcgGcg1313126197-26199
ORF3a269T269KnonsynaCgaAg1010126197-26199
ORF3a269T269deldelACG---1010126197-26199
ORF3a269T269del1delAcg-cg66126197-26199
ORF3a269T269RnonsynaCgaGg320.66666726197-26199
ORF3a269T269RnonsynaCGaGA310.33333326197-26199
ORF3a269T269InonsynaCGaTT11126197-26199
ORF3a269T269VnonsynACgGTg11126197-26199

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a269T269MaCgaTg29902990All0.000572
ORF3a269T269TacGacT19702952All0.000377
ORF3a269T269TacGacA8002952All0.000153
ORF3a269T269TacGacC1822952All0.000035
ORF3a269T269SAcgTcg21732173All0.000416
ORF3a269T269SAcgTcg21042104AY.40.003275
ORF3a269T269TacGacA247555B.1.1.70.000221
ORF3a269T269TacGacT247555B.1.1.70.000221
ORF3a269T269TacGacC61555B.1.1.70.000055
ORF3a269T269MaCgaTg443443P.10.006979
ORF3a269T269MaCgaTg371371AY.440.002258
ORF3a269T269MaCgaTg333333B.1.1.70.000298
ORF3a269T269MaCgaTg293293AY.40.000456
ORF3a269T269TacGacA287291B.1.1.5190.011397
ORF3a269T269TacGacT4291B.1.1.5190.000159
ORF3a269T269TacGacT199222AY.40.00031
ORF3a269T269TacGacC17222AY.40.000026
ORF3a269T269TacGacA6222AY.40.000009
ORF3a269T269TacGacT187187AY.16.10.087876
ORF3a269T269MaCgaTg132132B.1.20.001162
ORF3a269T269TacGacT94120AY.30.000935
ORF3a269T269TacGacA26120AY.30.000259
ORF3a269T269TacGacT97108B.1.617.20.000365
ORF3a269T269TacGacA9108B.1.617.20.000034
ORF3a269T269TacGacC2108B.1.617.20.000008
ORF3a269T269TacGacT95105AY.440.000578
ORF3a269T269TacGacA8105AY.440.000049
ORF3a269T269TacGacC2105AY.440.000012
ORF3a269T269PAcgCcg102102All0.00002
ORF3a269T269MaCgaTg8888AY.1030.000546
ORF3a269T269TacGacT4383B.10.000394
ORF3a269T269TacGacA3483B.10.000311
ORF3a269T269TacGacC683B.10.000055
ORF3a269T269TacGacT7182AY.430.000315
ORF3a269T269TacGacA1182AY.430.000049
ORF3a269T269MaCgaTg8282B.1.617.20.000309
ORF3a269T269MaCgaTg8181B.1.2580.00539
ORF3a269T269PAcgCcg8080AY.9.20.002938
ORF3a269T269TacGacT7878AY.290.00123
ORF3a269T269TacGacT5664B.1.20.000493
ORF3a269T269TacGacA764B.1.20.000062
ORF3a269T269TacGacC164B.1.20.000009
ORF3a269T269TacGacC5059B.1.2400.010778
ORF3a269T269TacGacT959B.1.2400.00194
ORF3a269T269MaCgaTg5858B.1.5690.84058
ORF3a269T269TacGacT5255B.1.1770.000685
ORF3a269T269TacGacA355B.1.1770.00004
ORF3a269T269TacGacT3747AY.250.000223
ORF3a269T269TacGacA1047AY.250.00006
ORF3a269T269MaCgaTg4646B.1.1600.001435
ORF3a269T269MaCgaTg4646B.1.1770.000606
ORF3a269T269MaCgaTg4545AY.3.10.003837
ORF3a269T269TacGacT2644B.1.10.000472
ORF3a269T269TacGacA1744B.1.10.000308
ORF3a269T269TacGacC144B.1.10.000018
ORF3a269T269MaCgaTg4343B.1.1.3690.019188
ORF3a269T269MaCgaTg4343B.1.160.110.245714
ORF3a269T269MaCgaTg4141AY.250.000247
ORF3a269T269MaCgaTg4141AY.430.000182
ORF3a269T269MaCgaTg4040B.10.000366
ORF3a269T269TacGacT3939Q.30.005656
ORF3a269T269TacGacT2938AY.1030.00018
ORF3a269T269TacGacC738AY.1030.000043
ORF3a269T269TacGacA238AY.1030.000012
ORF3a269T269TacGacA3638B.1.1.2940.04557
ORF3a269T269TacGacT238B.1.1.2940.002532
ORF3a269T269TacGacT3234P.10.000504
ORF3a269T269TacGacA234P.10.000032
ORF3a269T269MaCgaTg3131AY.1020.000822
ORF3a269T269TacGacT3131B.1.1390.022727
ORF3a269T269MaCgaTg3131B.1.258.110.012287
ORF3a269T269MaCgaTg3131B.1.5260.000729
ORF3a269T269MaCgaTg3030AY.570.019685
ORF3a269T269MaCgaTg2727AY.4.20.000586
ORF3a269T269TacGacT2426AY.260.000679
ORF3a269T269TacGacA226AY.260.000057
ORF3a269T269TacGacT2226AY.330.001469
ORF3a269T269TacGacC426AY.330.000267
ORF3a269T269MaCgaTg2424AY.30.000239
ORF3a269T269TacGacT2324B.1.4290.000541
ORF3a269T269TacGacA124B.1.4290.000024
ORF3a269T269TacGacT1923B.1.4270.000959
ORF3a269T269TacGacC423B.1.4270.000202
ORF3a269T269TacGacT2022AY.470.000622
ORF3a269T269TacGacA222AY.470.000062
ORF3a269T269TacGacT2222B.1.2430.001531
ORF3a269T269MaCgaTg2121AY.610.0022
ORF3a269T269MaCgaTg2121B.1.1.5190.000834
ORF3a269T269TacGacT2021B.1.1600.000624
ORF3a269T269TacGacA121B.1.1600.000031
ORF3a269T269MaCgaTg2020AY.60.000823
ORF3a269T269TacGacA1919B.1.2320.01021
ORF3a269T269MaCgaTg1717AY.390.00042
ORF3a269T269TacGacT1717B.1.1.2220.003468
ORF3a269T269TacGacT1717B.1.4090.013281
ORF3a269T269MaCgaTg1717C.370.001973
ORF3a269T269MaCgaTg1616AY.910.011687
ORF3a269T269MaCgaTg1616B.1.258.170.001664
ORF3a269T269TacGacT1616B.1.4160.020305
ORF3a269T269TacGacT1115C.370.001277
ORF3a269T269TacGacA415C.370.000464
ORF3a269T269TacGacT1214AY.1020.000318
ORF3a269T269TacGacA214AY.1020.000053
ORF3a269T269MaCgaTg1414AY.200.000544
ORF3a269T269SAcgTcg1414AY.430.000062
ORF3a269T269MaCgaTg1414AY.50.000289
ORF3a269T269AAcgGcg1313All0.000002
ORF3a269T269MaCgaTg1212AY.1000.000552
ORF3a269T269TacGacT1012AY.4.20.000217
ORF3a269T269TacGacC212AY.4.20.000043
ORF3a269T269TacGacT1112AY.50.000227
ORF3a269T269TacGacA112AY.50.000021
ORF3a269T269TacGacT1111AY.9.20.000404
ORF3a269T269MaCgaTg1111B.1.1.280.003424
ORF3a269T269TacGacT1010AD.20.00219
ORF3a269T269delACG---1010All0.000002
ORF3a269T269KaCgaAg1010All0.000002
ORF3a269T269MaCgaTg1010AY.230.000697
ORF3a269T269MaCgaTg1010B.1.10.000181
ORF3a269T269MaCgaTg1010B.1.438.10.001073
ORF3a269T269MaCgaTg1010B.1.6370.000731
ORF3a269T269TacGacA79AY.230.000488
ORF3a269T269TacGacT19AY.230.00007
ORF3a269T269TacGacC19AY.230.00007
ORF3a269T269MaCgaTg99AY.260.000255
ORF3a269T269MaCgaTg99B.1.2210.000639
ORF3a269T269TacGacT59B.1.3510.000149
ORF3a269T269TacGacC49B.1.3510.000119
ORF3a269T269MaCgaTg99P.1.120.004356
ORF3a269T269TacGacT88AY.540.000763
ORF3a269T269SAcgTcg88B.1.1770.000105
ORF3a269T269TacGacC48B.1.2210.000284
ORF3a269T269TacGacT38B.1.2210.000213
ORF3a269T269TacGacA18B.1.2210.000071
ORF3a269T269MaCgaTg88B.1.2340.001056
ORF3a269T269MaCgaTg88B.1.4290.000188
ORF3a269T269TacGacT88B.1.6210.000708
ORF3a269T269MaCgaTg88P.1.70.002554
ORF3a269T269MaCgaTg77AY.9.20.000257
ORF3a269T269MaCgaTg77AY.99.20.000645
ORF3a269T269TacGacT47AY.99.20.000369
ORF3a269T269TacGacC37AY.99.20.000276
ORF3a269T269MaCgaTg77B.1.3510.000208
ORF3a269T269TacGacA77B.1.4970.002203
ORF3a269T269TacGacT77P.1.140.000335
ORF3a269T269MaCgaTg77P.1.140.000335
ORF3a269T269del1Acg-cg66All0.000001
ORF3a269T269TacGacT56AY.1000.00023
ORF3a269T269TacGacC16AY.1000.000046
ORF3a269T269TacGacT66AY.200.000233
ORF3a269T269MaCgaTg66AY.290.000095
ORF3a269T269MaCgaTg66AY.320.003195
ORF3a269T269MaCgaTg66AY.420.000241
ORF3a269T269TacGacT36AY.590.001589
ORF3a269T269TacGacA36AY.590.001589
ORF3a269T269MaCgaTg66B0.000767
ORF3a269T269MaCgaTg66B.1.1.1760.002636
ORF3a269T269TacGacT66B.1.1.3680.018519
ORF3a269T269MaCgaTg66B.1.1.370.001157
ORF3a269T269MaCgaTg66B.1.1280.003812
ORF3a269T269TacGacT66B.1.160.140.012712
ORF3a269T269TacGacT66B.1.5260.000141
ORF3a269T269MaCgaTg55AY.1200.000186
ORF3a269T269MaCgaTg55AY.380.002496
ORF3a269T269MaCgaTg55AY.39.10.000198
ORF3a269T269MaCgaTg55AY.540.000477
ORF3a269T269TacGacA35AY.610.000314
ORF3a269T269TacGacT25AY.610.00021
ORF3a269T269MaCgaTg55AY.900.003422
ORF3a269T269TacGacT55B.1.617.10.000645
ORF3a269T269MaCgaTg55B.1.6210.000443
ORF3a269T269MaCgaTg55D.20.000375
ORF3a269T269MaCgaTg55P.1.40.004883
ORF3a269T269TacGacT55P.1.70.001596
ORF3a269T269TacGacT44AY.1150.020833
ORF3a269T269MaCgaTg44AY.330.000267
ORF3a269T269TacGacT44AY.370.001264
ORF3a269T269TacGacT44AY.390.000099
ORF3a269T269SAcgTcg44AY.390.000099
ORF3a269T269SAcgTcg44AY.420.000161
ORF3a269T269TacGacT44AY.420.000161
ORF3a269T269TacGacT44AY.460.000416
ORF3a269T269MaCgaTg44AY.470.000124
ORF3a269T269MaCgaTg44AY.5.40.001107
ORF3a269T269TacGacT44AY.750.000224
ORF3a269T269MaCgaTg44AY.750.000224
ORF3a269T269TacGacT24AY.850.000854
ORF3a269T269TacGacA24AY.850.000854
ORF3a269T269MaCgaTg44AY.880.003537
ORF3a269T269MaCgaTg44AY.920.001149
ORF3a269T269TacGacT44AY.950.003044
ORF3a269T269SAcgTcg44B.1.10.000073
ORF3a269T269TacGacA44B.1.1.2140.000222
ORF3a269T269MaCgaTg44B.1.1.3480.003185
ORF3a269T269SAcgTcg44B.1.1.70.000004
ORF3a269T269MaCgaTg44B.1.177.210.000306
ORF3a269T269MaCgaTg44B.1.2430.000278
ORF3a269T269TacGacT44B.1.2580.000266
ORF3a269T269MaCgaTg44B.1.3610.005155
ORF3a269T269MaCgaTg44B.1.3750.003279
ORF3a269T269TacGacT44B.1.4030.013072
ORF3a269T269TacGacT44B.1.5640.001704
ORF3a269T269MaCgaTg44B.1.5960.000349
ORF3a269T269MaCgaTg44B.1.617.10.000516
ORF3a269T269SAcgTcg44B.1.617.20.000015
ORF3a269T269TacGacA24B.1.6370.000146
ORF3a269T269TacGacT24B.1.6370.000146
ORF3a269T269MaCgaTg44P.1.150.000929
ORF3a269T269MaCgaTg44P.1.17.10.0035
ORF3a269T269RaCgaGg23All0
ORF3a269T269RaCGaGA13All0
ORF3a269T269MaCgaTg33AY.1140.000693
ORF3a269T269TacGacT33AY.1170.000254
ORF3a269T269MaCgaTg33AY.1180.000188
ORF3a269T269TacGacT23AY.1180.000125
ORF3a269T269TacGacA13AY.1180.000063
ORF3a269T269TacGacT33AY.1190.000106
ORF3a269T269TacGacT33AY.1210.000406
ORF3a269T269MaCgaTg33AY.190.003421
ORF3a269T269MaCgaTg33AY.20.001068
ORF3a269T269TacGacT33AY.270.000194
ORF3a269T269TacGacT23AY.3.10.000171
ORF3a269T269TacGacA13AY.3.10.000085
ORF3a269T269MaCgaTg33AY.360.000445
ORF3a269T269TacGacT33AY.360.000445
ORF3a269T269MaCgaTg33AY.4.2.10.000447
ORF3a269T269TacGacC33AY.4.50.000322
ORF3a269T269TacGacT33AY.450.000365
ORF3a269T269MaCgaTg33AY.46.30.002801
ORF3a269T269MaCgaTg33AY.46.40.000494
ORF3a269T269TacGacT33AY.60.000123
ORF3a269T269MaCgaTg33AY.650.001599
ORF3a269T269TacGacT33AY.9.10.000251
ORF3a269T269MaCgaTg33AY.930.000819
ORF3a269T269MaCgaTg33AY.980.000237
ORF3a269T269TacGacC23AY.98.10.000097
ORF3a269T269TacGacT13AY.98.10.000048
ORF3a269T269PAcgCcg33B.10.000027
ORF3a269T269TacGacT33B.1.1.250.001706
ORF3a269T269TacGacT33B.1.1.280.000934
ORF3a269T269MaCgaTg33B.1.1.4160.002715
ORF3a269T269TacGacA33B.1.160.80.003866
ORF3a269T269TacGacA33B.1.177.430.004431
ORF3a269T269SAcgTcg33B.1.177.600.000655
ORF3a269T269MaCgaTg33B.1.2410.002435
ORF3a269T269TacGacT33B.1.36.240.018519
ORF3a269T269MaCgaTg33B.1.4160.003807
ORF3a269T269TacGacA33B.1.4170.085714
ORF3a269T269MaCgaTg33B.1.4970.000944
ORF3a269T269TacGacT33B.1.5170.001281
ORF3a269T269SAcgTcg33B.1.5250.000339
ORF3a269T269del1Acg-cg33B.1.5250.000339
ORF3a269T269TacGacT33B.1.5250.000339
ORF3a269T269TacGacT33B.1.6310.010101
ORF3a269T269TacGacT23D.20.00015
ORF3a269T269TacGacC13D.20.000075
ORF3a269T269del1Acg-cg220.111111
ORF3a269T269delACG---220.111111
ORF3a269T269MaCgaTg22A.20.001324
ORF3a269T269MaCgaTg22A.2.50.000998
ORF3a269T269MaCgaTg22AY.1010.000981
ORF3a269T269MaCgaTg22AY.1050.001286
ORF3a269T269TacGacA22AY.1060.00067
ORF3a269T269TacGacT22AY.1140.000462
ORF3a269T269TacGacT22AY.116.10.000623
ORF3a269T269MaCgaTg22AY.1190.000071
ORF3a269T269TacGacT22AY.120.000632
ORF3a269T269TacGacT22AY.1200.000074
ORF3a269T269MaCgaTg22AY.140.000176
ORF3a269T269TacGacA12AY.160.00038
ORF3a269T269TacGacT12AY.160.00038
ORF3a269T269delACG---22AY.430.000009
ORF3a269T269PAcgCcg22AY.430.000009
ORF3a269T269SAcgTcg22AY.440.000012
ORF3a269T269MaCgaTg22AY.460.000208
ORF3a269T269TacGacC22AY.46.30.001867
ORF3a269T269TacGacT22AY.46.60.000144
ORF3a269T269TacGacA12AY.570.000656
ORF3a269T269TacGacT12AY.570.000656
ORF3a269T269TacGacA22AY.630.000774
ORF3a269T269TacGacT22AY.640.00119
ORF3a269T269TacGacT22AY.650.001066
ORF3a269T269TacGacC12AY.690.000187
ORF3a269T269TacGacT12AY.690.000187
ORF3a269T269TacGacT22AY.70.000392
ORF3a269T269MaCgaTg22AY.7.10.000225
ORF3a269T269MaCgaTg22AY.710.00095
ORF3a269T269MaCgaTg22AY.75.10.000361
ORF3a269T269MaCgaTg22AY.840.000875
ORF3a269T269SAcgTcg22AY.90.000135
ORF3a269T269MaCgaTg22AY.9.10.000167
ORF3a269T269KaCgaAg22AY.98.10.000097
ORF3a269T269MaCgaTg22AY.98.10.000097
ORF3a269T269SAcgTcg22B.10.000018
ORF3a269T269PAcgCcg22B.1.10.000036
ORF3a269T269TacGacC12B.1.1.1760.000439
ORF3a269T269TacGacT12B.1.1.1760.000439
ORF3a269T269TacGacT22B.1.1.2160.001781
ORF3a269T269TacGacT22B.1.1.2410.004141
ORF3a269T269TacGacT22B.1.1.3530.041667
ORF3a269T269MaCgaTg22B.1.1.3720.001377
ORF3a269T269TacGacT22B.1.1.4090.005666
ORF3a269T269TacGacT22B.1.1.4820.046512
ORF3a269T269TacGacT22B.1.1.5230.003125
ORF3a269T269delACG---22B.1.1.70.000002
ORF3a269T269AAcgGcg22B.1.1.70.000002
ORF3a269T269KaCgaAg22B.1.1.70.000002
ORF3a269T269PAcgCcg22B.1.1.70.000002
ORF3a269T269SAcgTcg22B.1.177.790.004684
ORF3a269T269AAcgGcg22B.1.20.000018
ORF3a269T269PAcgCcg22B.1.20.000018
ORF3a269T269AAcgGcg22B.1.2210.000142
ORF3a269T269MaCgaTg22B.1.258.140.001961
ORF3a269T269TacGacA22B.1.3190.006098
ORF3a269T269MaCgaTg22B.1.3190.006098
ORF3a269T269MaCgaTg22B.1.360.000292
ORF3a269T269TacGacT12B.1.360.000146
ORF3a269T269TacGacA12B.1.360.000146
ORF3a269T269TacGacA22B.1.36.210.00432
ORF3a269T269MaCgaTg22B.1.3960.001411
ORF3a269T269TacGacT22B.1.3990.003868
ORF3a269T269TacGacT22B.1.4000.000858
ORF3a269T269MaCgaTg22B.1.4270.000101
ORF3a269T269MaCgaTg22B.1.4680.011429
ORF3a269T269KaCgaAg22B.1.5960.000174
ORF3a269T269PAcgCcg22B.1.617.20.000008
ORF3a269T269TacGacT22B.1.621.10.001012
ORF3a269T269TacGacT22B.1.6230.001073
ORF3a269T269TacGacT22B.1.6280.000705
ORF3a269T269MaCgaTg22C.10.004785
ORF3a269T269MaCgaTg22C.36.30.001134
ORF3a269T269SAcgTcg22P.10.000032
ORF3a269T269PAcgCcg22P.10.000032
ORF3a269T269TacGacT22P.1.120.000968
ORF3a269T269TacGacT22P.1.150.000465
ORF3a269T269MaCgaTg22P.1.160.000748
ORF3a269T269TacGacT22P.1.20.002312
ORF3a269T269TacGacT22P.20.000373
ORF3a269T269MaCgaTg22P.20.000373
ORF3a269T269TacGacT22Q.80.00033
ORF3a269T269MaCgaTg11A.10.000282
ORF3a269T269TacGacT11A.10.000282
ORF3a269T269TacGacT11A.2.5.30.010309
ORF3a269T269TacGacT11A.50.001923
ORF3a269T269IaCGaTT11All0
ORF3a269T269VACgGTg11All0
ORF3a269T269RaCgaGg11AU.10.001266
ORF3a269T269TacGacT11AY.100.00053
ORF3a269T269SAcgTcg11AY.1020.000027
ORF3a269T269RaCgaGg11AY.1030.000006
ORF3a269T269MaCgaTg11AY.1060.000335
ORF3a269T269MaCgaTg11AY.1080.001103
ORF3a269T269TacGacT11AY.1100.000113
ORF3a269T269MaCgaTg11AY.1110.000183
ORF3a269T269TacGacT11AY.1160.000287
ORF3a269T269MaCgaTg11AY.1170.000085
ORF3a269T269delACG---11AY.1180.000063
ORF3a269T269SAcgTcg11AY.1190.000035
ORF3a269T269MaCgaTg11AY.120.000316
ORF3a269T269TacGacT11AY.120.10.000321
ORF3a269T269MaCgaTg11AY.1210.000135
ORF3a269T269MaCgaTg11AY.130.000161
ORF3a269T269TacGacT11AY.130.000161
ORF3a269T269TacGacT11AY.140.000088
ORF3a269T269KaCgaAg11AY.230.00007
ORF3a269T269SAcgTcg11AY.230.00007
ORF3a269T269TacGacT11AY.23.10.000417
ORF3a269T269KaCgaAg11AY.250.000006
ORF3a269T269MaCgaTg11AY.270.000065
ORF3a269T269TacGacT11AY.29.10.000221
ORF3a269T269TacGacT11AY.320.000532
ORF3a269T269MaCgaTg11AY.340.000097
ORF3a269T269TacGacT11AY.340.000097
ORF3a269T269TacGacT11AY.34.10.00051
ORF3a269T269MaCgaTg11AY.350.000233
ORF3a269T269MaCgaTg11AY.370.000316
ORF3a269T269AAcgGcg11AY.40.000002
ORF3a269T269KaCgaAg11AY.40.000002
ORF3a269T269TacGacT11AY.4.2.10.000149
ORF3a269T269MaCgaTg11AY.4.50.000107
ORF3a269T269SAcgTcg11AY.4.50.000107
ORF3a269T269MaCgaTg11AY.400.000964
ORF3a269T269AAcgGcg11AY.430.000004
ORF3a269T269AAcgGcg11AY.440.000006
ORF3a269T269MaCgaTg11AY.450.000122
ORF3a269T269SAcgTcg11AY.450.000122
ORF3a269T269MaCgaTg11AY.46.10.001027
ORF3a269T269TacGacT11AY.46.20.000635
ORF3a269T269MaCgaTg11AY.46.60.000072
ORF3a269T269TacGacT11AY.5.30.000337
ORF3a269T269TacGacA11AY.530.000288
ORF3a269T269MaCgaTg11AY.550.000917
ORF3a269T269MaCgaTg11AY.600.000938
ORF3a269T269TacGacT11AY.600.000938
ORF3a269T269AAcgGcg11AY.620.000436
ORF3a269T269TacGacA11AY.620.000436
ORF3a269T269MaCgaTg11AY.620.000436
ORF3a269T269RaCGaGA11AY.670.000464
ORF3a269T269delACG---11AY.680.000274
ORF3a269T269MaCgaTg11AY.690.000187
ORF3a269T269TacGacT11AY.7.20.000559
ORF3a269T269TacGacT11AY.700.000209
ORF3a269T269MaCgaTg11AY.740.000116
ORF3a269T269TacGacT11AY.740.000116
ORF3a269T269delACG---11AY.750.000056
ORF3a269T269TacGacT11AY.760.004831
ORF3a269T269TacGacT11AY.770.001127
ORF3a269T269TacGacT11AY.780.001541
ORF3a269T269MaCgaTg11AY.820.001357
ORF3a269T269MaCgaTg11AY.870.000833
ORF3a269T269TacGacT11AY.980.000079
ORF3a269T269MaCgaTg11AY.990.001049
ORF3a269T269delACG---11B0.000128
ORF3a269T269TacGacA11B0.000128
ORF3a269T269MaCgaTg11B.1.1.100.001115
ORF3a269T269MaCgaTg11B.1.1.1410.002012
ORF3a269T269TacGacC11B.1.1.1530.001095
ORF3a269T269MaCgaTg11B.1.1.1570.000913
ORF3a269T269TacGacA11B.1.1.1750.076923
ORF3a269T269MaCgaTg11B.1.1.2140.000055
ORF3a269T269TacGacT11B.1.1.2310.003096
ORF3a269T269TacGacT11B.1.1.2320.001815
ORF3a269T269MaCgaTg11B.1.1.2540.011236
ORF3a269T269TacGacA11B.1.1.2610.008621
ORF3a269T269AAcgGcg11B.1.1.280.000311
ORF3a269T269TacGacT11B.1.1.3020.002075
ORF3a269T269TacGacA11B.1.1.3060.000438
ORF3a269T269TacGacT11B.1.1.3120.001912
ORF3a269T269MaCgaTg11B.1.1.3170.000412
ORF3a269T269TacGacA11B.1.1.3260.001761
ORF3a269T269MaCgaTg11B.1.1.330.000421
ORF3a269T269PAcgCcg11B.1.1.330.000421
ORF3a269T269TacGacT11B.1.1.330.000421
ORF3a269T269TacGacA11B.1.1.3370.003597
ORF3a269T269TacGacT11B.1.1.370.000193
ORF3a269T269MaCgaTg11B.1.1.4620.008621
ORF3a269T269TacGacA11B.1.1.4640.001473
ORF3a269T269MaCgaTg11B.1.1.470.005348
ORF3a269T269IaCGaTT11B.1.1.5190.00004
ORF3a269T269MaCgaTg11B.1.1.610.008772
ORF3a269T269MaCgaTg11B.1.1.700.000341
ORF3a269T269TacGacT11B.1.1190.010526
ORF3a269T269MaCgaTg11B.1.1260.001276
ORF3a269T269PAcgCcg11B.1.1600.000031
ORF3a269T269PAcgCcg11B.1.1770.000013
ORF3a269T269TacGacT11B.1.177.140.006098
ORF3a269T269TacGacT11B.1.177.200.001517
ORF3a269T269TacGacT11B.1.177.230.003236
ORF3a269T269MaCgaTg11B.1.177.320.00135
ORF3a269T269TacGacT11B.1.177.350.000691
ORF3a269T269MaCgaTg11B.1.177.520.001757
ORF3a269T269SAcgTcg11B.1.177.540.000606
ORF3a269T269MaCgaTg11B.1.177.820.000477
ORF3a269T269TacGacA11B.1.2340.000132
ORF3a269T269AAcgGcg11B.1.2470.014925
ORF3a269T269TacGacT11B.1.258.170.000104
ORF3a269T269AAcgGcg11B.1.258.70.001912
ORF3a269T269MaCgaTg11B.1.2790.000514
ORF3a269T269MaCgaTg11B.1.3090.047619
ORF3a269T269PAcgCcg11B.1.3510.00003
ORF3a269T269PAcgCcg11B.1.351.30.000876
ORF3a269T269TacGacA11B.1.36.280.005747
ORF3a269T269SAcgTcg11B.1.3980.002976
ORF3a269T269MaCgaTg11B.1.4000.000429
ORF3a269T269MaCgaTg11B.1.4090.000781
ORF3a269T269MaCgaTg11B.1.4260.001009
ORF3a269T269KaCgaAg11B.1.4270.00005
ORF3a269T269TacGacT11B.1.438.10.000107
ORF3a269T269TacGacT11B.1.4390.005917
ORF3a269T269MaCgaTg11B.1.4520.013699
ORF3a269T269TacGacT11B.1.4590.004082
ORF3a269T269SAcgTcg11B.1.4970.000315
ORF3a269T269MaCgaTg11B.1.5170.000427
ORF3a269T269TacGacT11B.1.5230.002451
ORF3a269T269PAcgCcg11B.1.5250.000113
ORF3a269T269PAcgCcg11B.1.5260.000024
ORF3a269T269MaCgaTg11B.1.5440.006024
ORF3a269T269MaCgaTg11B.1.5460.003704
ORF3a269T269TacGacT11B.1.5670.003333
ORF3a269T269TacGacT11B.1.5950.000261
ORF3a269T269TacGacA11B.1.5960.000087
ORF3a269T269MaCgaTg11B.1.6090.000479
ORF3a269T269SAcgTcg11B.1.617.10.000129
ORF3a269T269TacGacT11B.1.619.10.000641
ORF3a269T269TacGacC11B.1.6270.00202
ORF3a269T269MaCgaTg11B.1.6280.000352
ORF3a269T269MaCgaTg11B.1.6360.006711
ORF3a269T269MaCgaTg11B.40.002208
ORF3a269T269SAcgTcg11B.60.00091
ORF3a269T269TacGacT11C.160.00106
ORF3a269T269TacGacT11C.360.000911
ORF3a269T269VACgGTg11P.10.000016
ORF3a269T269MaCgaTg11P.1.100.000269
ORF3a269T269TacGacT11P.1.130.000898
ORF3a269T269TacGacT11P.1.17.10.000875
ORF3a269T269SAcgTcg11P.20.000187
ORF3a269T269TacGacT11P.30.001595
ORF3a269T269TacGacT11Q.10.000126
ORF3a269T269MaCgaTg11Q.80.000165
ORF3a269T269del1Acg-cg11R.10.00009
ORF3a269T269MaCgaTg11R.10.00009
ORF3a269T269TacGacT11R.10.00009
ORF3a269T269MaCgaTg11Y.10.012821

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.