CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 262 & Codon = ccT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a262P262PsynccAccT4763360.70588226176-26178

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a262P262PccAccT336476All0.000064
ORF3a262P262PccAccT175187AY.30.001741
ORF3a262P262PccAccT2156B.1.1.70.000019
ORF3a262P262PccAccT940AY.440.000055
ORF3a262P262PccAccT2836AY.40.000044
ORF3a262P262PccAccT1829B.1.617.20.000068
ORF3a262P262PccAccT1516AY.1020.000398
ORF3a262P262PccAccT910B.1.4290.000212
ORF3a262P262PccAccT37AY.1030.000019
ORF3a262P262PccAccT37AY.430.000013
ORF3a262P262PccAccT66AY.46.50.00119
ORF3a262P262PccAccT35AY.4.20.000065
ORF3a262P262PccAccT55B.1.20.000044
ORF3a262P262PccAccT34AY.250.000018
ORF3a262P262PccAccT34AY.460.000312
ORF3a262P262PccAccT34B.1.5250.000339
ORF3a262P262PccAccT33AY.230.000209
ORF3a262P262PccAccT13AY.290.000016
ORF3a262P262PccAccT13AY.390.000025
ORF3a262P262PccAccT23AY.470.000062
ORF3a262P262PccAccT23P.1.140.000096
ORF3a262P262PccAccT12AY.1170.000085
ORF3a262P262PccAccT22AY.1180.000125
ORF3a262P262PccAccT22AY.1190.000071
ORF3a262P262PccAccT22B.1.10.000036
ORF3a262P262PccAccT22B.1.177.30.015267
ORF3a262P262PccAccT22P.1.20.002312
ORF3a262P262PccAccT11AY.1060.000335
ORF3a262P262PccAccT11AY.450.000122
ORF3a262P262PccAccT11AY.46.40.000165
ORF3a262P262PccAccT11AY.540.000095
ORF3a262P262PccAccT11AY.590.00053
ORF3a262P262PccAccT11AY.850.000427
ORF3a262P262PccAccT11B0.000128
ORF3a262P262PccAccT11B.1.1770.000013
ORF3a262P262PccAccT11B.1.2010.005682
ORF3a262P262PccAccT11B.1.3510.00003
ORF3a262P262PccAccT11B.550.00295
ORF3a262P262PccAccT11N.40.004255

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.