CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 262 & Codon = Tca

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a262P262SnonsynCcaTca28902890126176-26178

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a262P262SCcaTca28902890All0.000553
ORF3a262P262SCcaTca13531353B.1.1.70.001211
ORF3a262P262SCcaTca446446AY.40.000694
ORF3a262P262SCcaTca7777B.1.5260.00181
ORF3a262P262SCcaTca7474B.1.20.000652
ORF3a262P262SCcaTca7070B.1.1.2840.007518
ORF3a262P262SCcaTca5252B.1.1770.000685
ORF3a262P262SCcaTca4545B.1.617.20.000169
ORF3a262P262SCcaTca4141AY.440.00025
ORF3a262P262SCcaTca3838AY.430.000168
ORF3a262P262SCcaTca3737AY.250.000223
ORF3a262P262SCcaTca3535AY.90.002366
ORF3a262P262SCcaTca3434B.1.1.5190.00135
ORF3a262P262SCcaTca2828B.1.5960.00244
ORF3a262P262SCcaTca2828P.10.000441
ORF3a262P262SCcaTca2424B.1.1600.000749
ORF3a262P262SCcaTca2222B.10.000202
ORF3a262P262SCcaTca1919B.1.258.220.050667
ORF3a262P262SCcaTca1818B.1.10.000327
ORF3a262P262SCcaTca1717AY.1030.000106
ORF3a262P262SCcaTca1717AY.370.005373
ORF3a262P262SCcaTca1616AY.260.000453
ORF3a262P262SCcaTca1313AY.30.000129
ORF3a262P262SCcaTca1111AY.360.00163
ORF3a262P262SCcaTca1111B.1.1.950.215686
ORF3a262P262SCcaTca1111B.1.4780.129412
ORF3a262P262SCcaTca1010B.1.1310.087719
ORF3a262P262SCcaTca1010B.1.177.160.006645
ORF3a262P262SCcaTca99B.1.177.720.030508
ORF3a262P262SCcaTca99B.1.4290.000212
ORF3a262P262SCcaTca88AY.320.00426
ORF3a262P262SCcaTca88AY.470.000249
ORF3a262P262SCcaTca88AY.99.20.000737
ORF3a262P262SCcaTca88B.1.1.2790.008969
ORF3a262P262SCcaTca77AE.80.003423
ORF3a262P262SCcaTca77AY.1020.000186
ORF3a262P262SCcaTca77AY.460.000729
ORF3a262P262SCcaTca77AY.610.000733
ORF3a262P262SCcaTca77B.1.1.2140.000388
ORF3a262P262SCcaTca77B.1.2210.000497
ORF3a262P262SCcaTca77B.1.5170.002989
ORF3a262P262SCcaTca66AY.1000.000276
ORF3a262P262SCcaTca66B.1.2580.000399
ORF3a262P262SCcaTca66B.1.258.170.000624
ORF3a262P262SCcaTca55AY.1200.000186
ORF3a262P262SCcaTca55AY.390.000124
ORF3a262P262SCcaTca55AY.420.000201
ORF3a262P262SCcaTca55B.1.1.3570.625
ORF3a262P262SCcaTca55B.1.2430.000348
ORF3a262P262SCcaTca55B.1.360.00073
ORF3a262P262SCcaTca55B.1.6210.000443
ORF3a262P262SCcaTca44AY.1190.000141
ORF3a262P262SCcaTca44AY.200.000155
ORF3a262P262SCcaTca44AY.290.000063
ORF3a262P262SCcaTca44B.1.177.480.0125
ORF3a262P262SCcaTca44B.1.177.770.002905
ORF3a262P262SCcaTca44B.1.2340.000528
ORF3a262P262SCcaTca44B.1.3510.000119
ORF3a262P262SCcaTca44P.20.000747
ORF3a262P262SCcaTca33AD.20.000657
ORF3a262P262SCcaTca33AY.1180.000188
ORF3a262P262SCcaTca33AY.270.000194
ORF3a262P262SCcaTca33AY.330.0002
ORF3a262P262SCcaTca33AY.450.000365
ORF3a262P262SCcaTca33AY.550.002752
ORF3a262P262SCcaTca33AY.60.000123
ORF3a262P262SCcaTca33AY.750.000168
ORF3a262P262SCcaTca33AY.930.000819
ORF3a262P262SCcaTca33B.1.177.860.00055
ORF3a262P262SCcaTca33B.1.2320.001612
ORF3a262P262SCcaTca33B.1.4040.003906
ORF3a262P262SCcaTca33B.1.4270.000151
ORF3a262P262SCcaTca33B.60.00273
ORF3a262P262SCcaTca33C.370.000348
ORF3a262P262SCcaTca22A.2.40.006734
ORF3a262P262SCcaTca22A.2.5.10.009615
ORF3a262P262SCcaTca22AY.1100.000225
ORF3a262P262SCcaTca22AY.230.000139
ORF3a262P262SCcaTca22AY.300.000791
ORF3a262P262SCcaTca22AY.46.60.000144
ORF3a262P262SCcaTca22AY.9.10.000167
ORF3a262P262SCcaTca22AY.9.20.000073
ORF3a262P262SCcaTca22AY.990.002099
ORF3a262P262SCcaTca22B.1.1.3170.000823
ORF3a262P262SCcaTca22B.1.110.30.001437
ORF3a262P262SCcaTca22B.1.1390.001466
ORF3a262P262SCcaTca22B.1.177.810.000379
ORF3a262P262SCcaTca22B.1.2100.004264
ORF3a262P262SCcaTca22B.1.466.20.000782
ORF3a262P262SCcaTca22B.1.6090.000959
ORF3a262P262SCcaTca22B.1.6280.000705
ORF3a262P262SCcaTca22D.20.00015
ORF3a262P262SCcaTca22G.10.083333
ORF3a262P262SCcaTca22P.1.140.000096
ORF3a262P262SCcaTca22R.10.00018
ORF3a262P262SCcaTca11A.10.000282
ORF3a262P262SCcaTca11A.20.000662
ORF3a262P262SCcaTca11AY.1060.000335
ORF3a262P262SCcaTca11AY.1070.000466
ORF3a262P262SCcaTca11AY.130.000161
ORF3a262P262SCcaTca11AY.34.10.00051
ORF3a262P262SCcaTca11AY.350.000233
ORF3a262P262SCcaTca11AY.4.20.000022
ORF3a262P262SCcaTca11AY.4.2.10.000149
ORF3a262P262SCcaTca11AY.480.000465
ORF3a262P262SCcaTca11AY.50.000021
ORF3a262P262SCcaTca11AY.500.000799
ORF3a262P262SCcaTca11AY.510.000909
ORF3a262P262SCcaTca11AY.540.000095
ORF3a262P262SCcaTca11AY.680.000274
ORF3a262P262SCcaTca11AY.740.000116
ORF3a262P262SCcaTca11AY.790.001211
ORF3a262P262SCcaTca11AY.900.000684
ORF3a262P262SCcaTca11AY.970.001701
ORF3a262P262SCcaTca11AY.98.10.000048
ORF3a262P262SCcaTca11B.1.1.1700.001247
ORF3a262P262SCcaTca11B.1.1.2410.00207
ORF3a262P262SCcaTca11B.1.1.250.000569
ORF3a262P262SCcaTca11B.1.1.2770.000759
ORF3a262P262SCcaTca11B.1.1.280.000311
ORF3a262P262SCcaTca11B.1.1.3050.003861
ORF3a262P262SCcaTca11B.1.1.3180.000302
ORF3a262P262SCcaTca11B.1.1.3370.003597
ORF3a262P262SCcaTca11B.1.1.3700.012658
ORF3a262P262SCcaTca11B.1.1.3970.002252
ORF3a262P262SCcaTca11B.1.1.4170.002703
ORF3a262P262SCcaTca11B.1.1.4400.011765
ORF3a262P262SCcaTca11B.1.1.5260.003546
ORF3a262P262SCcaTca11B.1.1110.001175
ORF3a262P262SCcaTca11B.1.160.220.006757
ORF3a262P262SCcaTca11B.1.160.280.002924
ORF3a262P262SCcaTca11B.1.177.210.000076
ORF3a262P262SCcaTca11B.1.177.460.000918
ORF3a262P262SCcaTca11B.1.177.580.001332
ORF3a262P262SCcaTca11B.1.177.730.000566
ORF3a262P262SCcaTca11B.1.177.820.000477
ORF3a262P262SCcaTca11B.1.2140.003663
ORF3a262P262SCcaTca11B.1.214.20.0006
ORF3a262P262SCcaTca11B.1.2400.000216
ORF3a262P262SCcaTca11B.1.3360.002439
ORF3a262P262SCcaTca11B.1.36.290.000517
ORF3a262P262SCcaTca11B.1.3610.001289
ORF3a262P262SCcaTca11B.1.4110.003704
ORF3a262P262SCcaTca11B.1.4340.052632
ORF3a262P262SCcaTca11B.1.4360.001029
ORF3a262P262SCcaTca11B.1.4970.000315
ORF3a262P262SCcaTca11B.1.4990.00105
ORF3a262P262SCcaTca11B.1.5250.000113
ORF3a262P262SCcaTca11B.1.5870.001898
ORF3a262P262SCcaTca11B.1.5950.000261
ORF3a262P262SCcaTca11B.1.6190.000871
ORF3a262P262SCcaTca11B.290.003509
ORF3a262P262SCcaTca11B.4.50.011905
ORF3a262P262SCcaTca11B.6.30.026316
ORF3a262P262SCcaTca11P.1.170.000162
ORF3a262P262SCcaTca11P.1.40.000977
ORF3a262P262SCcaTca11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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