CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 261 | E261X | nonsyn | Gaa | Taa | 2824 | 2824 | 1 | 26173-26175 | |
ORF3a | 261 | E261del | del | GAA | --- | 579 | 579 | 1 | 26173-26175 | |
ORF3a | 261 | E261G | nonsyn | gAa | gGa | 406 | 406 | 1 | 26173-26175 | |
ORF3a | 261 | E261K | nonsyn | Gaa | Aaa | 205 | 205 | 1 | 26173-26175 | |
ORF3a | 261 | E261V | nonsyn | gAa | gTa | 146 | 140 | 0.958904 | 26173-26175 | |
ORF3a | 261 | E261V | nonsyn | gAA | gTT | 146 | 6 | 0.0410959 | 26173-26175 | |
ORF3a | 261 | E261E | syn | gaA | gaG | 131 | 131 | 1 | 26173-26175 | |
ORF3a | 261 | E261A | nonsyn | gAa | gCa | 114 | 114 | 1 | 26173-26175 | |
ORF3a | 261 | E261Q | nonsyn | Gaa | Caa | 31 | 31 | 1 | 26173-26175 | |
ORF3a | 261 | E261D | nonsyn | gaA | gaT | 5 | 5 | 1 | 26173-26175 | |
ORF3a | 261 | E261del1 | del | Gaa | -aa | 5 | 4 | 0.8 | 26173-26175 | |
ORF3a | 261 | E261del1 | del | gaA | ga- | 5 | 1 | 0.2 | 26173-26175 | |
ORF3a | 261 | E261del2 | del | GAA | --N | 2 | 1 | 0.5 | 26173-26175 | |
ORF3a | 261 | E261del2 | del | GAa | --a | 2 | 1 | 0.5 | 26173-26175 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 261 | E261X | Gaa | Taa | 2824 | 2824 | All | 0.00054 |
ORF3a | 261 | E261X | Gaa | Taa | 1854 | 1854 | B.1.36.29 | 0.959131 |
ORF3a | 261 | E261del | GAA | --- | 579 | 579 | All | 0.000111 |
ORF3a | 261 | E261G | gAa | gGa | 406 | 406 | All | 0.000078 |
ORF3a | 261 | E261K | Gaa | Aaa | 205 | 205 | All | 0.000039 |
ORF3a | 261 | E261X | Gaa | Taa | 158 | 158 | B.1.1.7 | 0.000141 |
ORF3a | 261 | E261V | gAa | gTa | 140 | 146 | All | 0.000027 |
ORF3a | 261 | E261V | gAA | gTT | 6 | 146 | All | 0.000001 |
ORF3a | 261 | E261X | Gaa | Taa | 132 | 132 | B.1 | 0.001209 |
ORF3a | 261 | E261E | gaA | gaG | 131 | 131 | All | 0.000025 |
ORF3a | 261 | E261A | gAa | gCa | 114 | 114 | All | 0.000022 |
ORF3a | 261 | E261X | Gaa | Taa | 94 | 94 | B.1.2 | 0.000828 |
ORF3a | 261 | E261G | gAa | gGa | 85 | 85 | B.1.617.2 | 0.00032 |
ORF3a | 261 | E261del | GAA | --- | 64 | 64 | B.1.1.7 | 0.000057 |
ORF3a | 261 | E261X | Gaa | Taa | 63 | 63 | AY.4 | 0.000098 |
ORF3a | 261 | E261G | gAa | gGa | 60 | 60 | B.1.577 | 0.041237 |
ORF3a | 261 | E261del | GAA | --- | 59 | 59 | AY.44 | 0.000359 |
ORF3a | 261 | E261X | Gaa | Taa | 46 | 46 | AY.100 | 0.002116 |
ORF3a | 261 | E261del | GAA | --- | 45 | 45 | AY.4 | 0.00007 |
ORF3a | 261 | E261V | gAa | gTa | 45 | 45 | AY.4.2 | 0.000976 |
ORF3a | 261 | E261E | gaA | gaG | 45 | 45 | B.1.177.60 | 0.00983 |
ORF3a | 261 | E261del | GAA | --- | 44 | 44 | AY.25 | 0.000265 |
ORF3a | 261 | E261X | Gaa | Taa | 44 | 44 | B.1.617.2 | 0.000166 |
ORF3a | 261 | E261K | Gaa | Aaa | 42 | 42 | AY.103 | 0.000261 |
ORF3a | 261 | E261G | gAa | gGa | 42 | 42 | AY.116 | 0.012045 |
ORF3a | 261 | E261X | Gaa | Taa | 40 | 40 | AY.25 | 0.000241 |
ORF3a | 261 | E261del | GAA | --- | 35 | 35 | B.1.617.2 | 0.000132 |
ORF3a | 261 | E261K | Gaa | Aaa | 34 | 34 | B.1.1.7 | 0.00003 |
ORF3a | 261 | E261Q | Gaa | Caa | 31 | 31 | All | 0.000006 |
ORF3a | 261 | E261del | GAA | --- | 31 | 31 | AY.47 | 0.000964 |
ORF3a | 261 | E261G | gAa | gGa | 31 | 31 | B.1.1.7 | 0.000028 |
ORF3a | 261 | E261X | Gaa | Taa | 30 | 30 | B.1.36 | 0.004377 |
ORF3a | 261 | E261G | gAa | gGa | 28 | 28 | AY.25 | 0.000168 |
ORF3a | 261 | E261X | Gaa | Taa | 28 | 28 | AY.43 | 0.000124 |
ORF3a | 261 | E261del | GAA | --- | 27 | 27 | AY.13 | 0.004346 |
ORF3a | 261 | E261X | Gaa | Taa | 26 | 26 | Q.4 | 0.011824 |
ORF3a | 261 | E261X | Gaa | Taa | 24 | 24 | AY.5 | 0.000496 |
ORF3a | 261 | E261X | Gaa | Taa | 24 | 24 | B.1.36.17 | 0.011858 |
ORF3a | 261 | E261V | gAa | gTa | 23 | 23 | B.1.429 | 0.000541 |
ORF3a | 261 | E261E | gaA | gaG | 21 | 21 | AY.44 | 0.000128 |
ORF3a | 261 | E261V | gAa | gTa | 21 | 21 | AY.44 | 0.000128 |
ORF3a | 261 | E261del | GAA | --- | 20 | 20 | AY.51 | 0.018182 |
ORF3a | 261 | E261K | Gaa | Aaa | 19 | 19 | B.1.177 | 0.00025 |
ORF3a | 261 | E261del | GAA | --- | 19 | 19 | B.1.2 | 0.000167 |
ORF3a | 261 | E261A | gAa | gCa | 19 | 19 | B.1.617.2 | 0.000072 |
ORF3a | 261 | E261E | gaA | gaG | 19 | 19 | B.1.621 | 0.001682 |
ORF3a | 261 | E261G | gAa | gGa | 18 | 18 | AY.113 | 0.002563 |
ORF3a | 261 | E261G | gAa | gGa | 18 | 18 | AY.39 | 0.000445 |
ORF3a | 261 | E261A | gAa | gCa | 18 | 18 | AY.54 | 0.001716 |
ORF3a | 261 | E261A | gAa | gCa | 17 | 17 | B.1.595 | 0.004436 |
ORF3a | 261 | E261G | gAa | gGa | 14 | 14 | AY.111 | 0.002564 |
ORF3a | 261 | E261G | gAa | gGa | 14 | 14 | B.1.429 | 0.000329 |
ORF3a | 261 | E261K | Gaa | Aaa | 13 | 13 | AY.4 | 0.00002 |
ORF3a | 261 | E261E | gaA | gaG | 13 | 13 | B.1.1.7 | 0.000012 |
ORF3a | 261 | E261del | GAA | --- | 13 | 13 | B.1.177.21 | 0.000994 |
ORF3a | 261 | E261G | gAa | gGa | 13 | 13 | B.1.2 | 0.000114 |
ORF3a | 261 | E261del | GAA | --- | 12 | 12 | AY.3 | 0.000119 |
ORF3a | 261 | E261X | Gaa | Taa | 12 | 12 | AY.46 | 0.001249 |
ORF3a | 261 | E261X | Gaa | Taa | 12 | 12 | B.1.238 | 0.179104 |
ORF3a | 261 | E261del | GAA | --- | 11 | 11 | AY.103 | 0.000068 |
ORF3a | 261 | E261G | gAa | gGa | 11 | 11 | AY.103 | 0.000068 |
ORF3a | 261 | E261del | GAA | --- | 11 | 11 | B.1 | 0.000101 |
ORF3a | 261 | E261del | GAA | --- | 11 | 11 | B.1.621 | 0.000974 |
ORF3a | 261 | E261X | Gaa | Taa | 10 | 10 | AY.9.1 | 0.000837 |
ORF3a | 261 | E261A | gAa | gCa | 10 | 10 | B.1.2 | 0.000088 |
ORF3a | 261 | E261Q | Gaa | Caa | 10 | 10 | B.1.617.2 | 0.000038 |
ORF3a | 261 | E261X | Gaa | Taa | 9 | 9 | AY.54 | 0.000858 |
ORF3a | 261 | E261del | GAA | --- | 9 | 9 | B.1.177 | 0.000119 |
ORF3a | 261 | E261X | Gaa | Taa | 9 | 9 | B.1.462 | 0.065217 |
ORF3a | 261 | E261V | gAa | gTa | 9 | 9 | B.1.617.2 | 0.000034 |
ORF3a | 261 | E261K | Gaa | Aaa | 8 | 8 | AY.34 | 0.000776 |
ORF3a | 261 | E261G | gAa | gGa | 8 | 8 | AY.4 | 0.000012 |
ORF3a | 261 | E261A | gAa | gCa | 8 | 8 | AY.43 | 0.000035 |
ORF3a | 261 | E261X | Gaa | Taa | 8 | 8 | AY.44 | 0.000049 |
ORF3a | 261 | E261A | gAa | gCa | 8 | 8 | B.1.1.294 | 0.010127 |
ORF3a | 261 | E261X | Gaa | Taa | 8 | 8 | B.1.260 | 0.026756 |
ORF3a | 261 | E261del | GAA | --- | 8 | 8 | B.1.311 | 0.002197 |
ORF3a | 261 | E261del | GAA | --- | 7 | 7 | AY.118 | 0.000439 |
ORF3a | 261 | E261K | Gaa | Aaa | 7 | 7 | AY.23 | 0.000488 |
ORF3a | 261 | E261del | GAA | --- | 7 | 7 | AY.4.2 | 0.000152 |
ORF3a | 261 | E261del | GAA | --- | 7 | 7 | AY.43 | 0.000031 |
ORF3a | 261 | E261X | Gaa | Taa | 7 | 7 | B.1.177 | 0.000092 |
ORF3a | 261 | E261del | GAA | --- | 6 | 6 | 0.333333 | |
ORF3a | 261 | E261K | Gaa | Aaa | 6 | 6 | AY.25 | 0.000036 |
ORF3a | 261 | E261V | gAa | gTa | 6 | 6 | AY.4 | 0.000009 |
ORF3a | 261 | E261G | gAa | gGa | 6 | 6 | AY.46 | 0.000624 |
ORF3a | 261 | E261X | Gaa | Taa | 6 | 6 | AY.57 | 0.003937 |
ORF3a | 261 | E261K | Gaa | Aaa | 6 | 6 | AY.76 | 0.028986 |
ORF3a | 261 | E261del | GAA | --- | 6 | 6 | AY.9 | 0.000406 |
ORF3a | 261 | E261X | Gaa | Taa | 6 | 6 | AY.98.1 | 0.000291 |
ORF3a | 261 | E261E | gaA | gaG | 6 | 6 | B.1 | 0.000055 |
ORF3a | 261 | E261G | gAa | gGa | 6 | 6 | B.1.1 | 0.000109 |
ORF3a | 261 | E261V | gAa | gTa | 6 | 6 | B.1.1.7 | 0.000005 |
ORF3a | 261 | E261K | Gaa | Aaa | 6 | 6 | B.1.2 | 0.000053 |
ORF3a | 261 | E261X | Gaa | Taa | 6 | 6 | B.1.243 | 0.000418 |
ORF3a | 261 | E261del | GAA | --- | 6 | 6 | B.1.526 | 0.000141 |
ORF3a | 261 | E261K | Gaa | Aaa | 6 | 6 | B.1.617.2 | 0.000023 |
ORF3a | 261 | E261D | gaA | gaT | 5 | 5 | All | 0.000001 |
ORF3a | 261 | E261del1 | Gaa | -aa | 4 | 5 | All | 0.000001 |
ORF3a | 261 | E261del1 | gaA | ga- | 1 | 5 | All | 0 |
ORF3a | 261 | E261X | Gaa | Taa | 5 | 5 | AY.102 | 0.000133 |
ORF3a | 261 | E261X | Gaa | Taa | 5 | 5 | AY.103 | 0.000031 |
ORF3a | 261 | E261A | gAa | gCa | 5 | 5 | AY.25 | 0.00003 |
ORF3a | 261 | E261del | GAA | --- | 5 | 5 | AY.29 | 0.000079 |
ORF3a | 261 | E261Q | Gaa | Caa | 5 | 5 | AY.33 | 0.000334 |
ORF3a | 261 | E261X | Gaa | Taa | 5 | 5 | AY.39 | 0.000124 |
ORF3a | 261 | E261K | Gaa | Aaa | 5 | 5 | AY.43 | 0.000022 |
ORF3a | 261 | E261G | gAa | gGa | 5 | 5 | AY.47 | 0.000156 |
ORF3a | 261 | E261del | GAA | --- | 5 | 5 | AY.98.1 | 0.000242 |
ORF3a | 261 | E261X | Gaa | Taa | 5 | 5 | B.1.1 | 0.000091 |
ORF3a | 261 | E261X | Gaa | Taa | 5 | 5 | B.1.247 | 0.074627 |
ORF3a | 261 | E261del | GAA | --- | 5 | 5 | B.1.389 | 0.00501 |
ORF3a | 261 | E261X | Gaa | Taa | 5 | 5 | B.1.456 | 0.01634 |
ORF3a | 261 | E261X | Gaa | Taa | 5 | 5 | B.1.465 | 0.019011 |
ORF3a | 261 | E261X | Gaa | Taa | 5 | 5 | B.1.564 | 0.002129 |
ORF3a | 261 | E261del | GAA | --- | 5 | 5 | B.1.637 | 0.000365 |
ORF3a | 261 | E261del | GAA | --- | 5 | 5 | P.1 | 0.000079 |
ORF3a | 261 | E261A | gAa | gCa | 5 | 5 | Q.1 | 0.000632 |
ORF3a | 261 | E261V | gAa | gTa | 4 | 4 | AY.102 | 0.000106 |
ORF3a | 261 | E261Q | Gaa | Caa | 4 | 4 | AY.102 | 0.000106 |
ORF3a | 261 | E261E | gaA | gaG | 4 | 4 | AY.103 | 0.000025 |
ORF3a | 261 | E261del | GAA | --- | 4 | 4 | AY.120.1 | 0.001284 |
ORF3a | 261 | E261K | Gaa | Aaa | 4 | 4 | AY.26 | 0.000113 |
ORF3a | 261 | E261K | Gaa | Aaa | 4 | 4 | AY.39.1 | 0.000158 |
ORF3a | 261 | E261E | gaA | gaG | 4 | 4 | AY.4 | 0.000006 |
ORF3a | 261 | E261X | Gaa | Taa | 4 | 4 | B.1.160 | 0.000125 |
ORF3a | 261 | E261X | Gaa | Taa | 4 | 4 | B.1.36.10 | 0.019139 |
ORF3a | 261 | E261K | Gaa | Aaa | 4 | 4 | B.1.427 | 0.000202 |
ORF3a | 261 | E261del | GAA | --- | 4 | 4 | B.1.525 | 0.000453 |
ORF3a | 261 | E261X | Gaa | Taa | 4 | 4 | B.1.526 | 0.000094 |
ORF3a | 261 | E261X | Gaa | Taa | 4 | 4 | B.1.621 | 0.000354 |
ORF3a | 261 | E261A | gAa | gCa | 4 | 4 | P.1 | 0.000063 |
ORF3a | 261 | E261V | gAA | gTT | 2 | 4 | P.1 | 0.000032 |
ORF3a | 261 | E261V | gAa | gTa | 2 | 4 | P.1 | 0.000032 |
ORF3a | 261 | E261X | Gaa | Taa | 3 | 3 | A | 0.001161 |
ORF3a | 261 | E261del | GAA | --- | 3 | 3 | AY.102 | 0.00008 |
ORF3a | 261 | E261A | gAa | gCa | 3 | 3 | AY.102 | 0.00008 |
ORF3a | 261 | E261V | gAa | gTa | 3 | 3 | AY.103 | 0.000019 |
ORF3a | 261 | E261G | gAa | gGa | 3 | 3 | AY.119 | 0.000106 |
ORF3a | 261 | E261del | GAA | --- | 3 | 3 | AY.26 | 0.000085 |
ORF3a | 261 | E261E | gaA | gaG | 3 | 3 | AY.3 | 0.00003 |
ORF3a | 261 | E261del | GAA | --- | 3 | 3 | AY.39 | 0.000074 |
ORF3a | 261 | E261K | Gaa | Aaa | 3 | 3 | AY.42 | 0.000121 |
ORF3a | 261 | E261K | Gaa | Aaa | 3 | 3 | AY.44 | 0.000018 |
ORF3a | 261 | E261del | GAA | --- | 3 | 3 | AY.45 | 0.000365 |
ORF3a | 261 | E261G | gAa | gGa | 3 | 3 | AY.5 | 0.000062 |
ORF3a | 261 | E261del | GAA | --- | 3 | 3 | AY.75 | 0.000168 |
ORF3a | 261 | E261A | gAa | gCa | 3 | 3 | AY.81 | 0.005976 |
ORF3a | 261 | E261X | Gaa | Taa | 3 | 3 | AY.99.2 | 0.000276 |
ORF3a | 261 | E261del | GAA | --- | 3 | 3 | B.1.1.519 | 0.000119 |
ORF3a | 261 | E261A | gAa | gCa | 3 | 3 | B.1.1.7 | 0.000003 |
ORF3a | 261 | E261X | Gaa | Taa | 3 | 3 | B.1.214 | 0.010989 |
ORF3a | 261 | E261del | GAA | --- | 3 | 3 | B.1.258.11 | 0.001189 |
ORF3a | 261 | E261X | Gaa | Taa | 3 | 3 | B.1.311 | 0.000824 |
ORF3a | 261 | E261X | Gaa | Taa | 3 | 3 | B.1.351 | 0.000089 |
ORF3a | 261 | E261X | Gaa | Taa | 3 | 3 | B.1.460 | 0.053571 |
ORF3a | 261 | E261X | Gaa | Taa | 3 | 3 | B.1.525 | 0.000339 |
ORF3a | 261 | E261X | Gaa | Taa | 3 | 3 | B.1.533 | 0.028846 |
ORF3a | 261 | E261X | Gaa | Taa | 3 | 3 | B.1.9.5 | 0.017045 |
ORF3a | 261 | E261G | gAa | gGa | 3 | 3 | P.1 | 0.000047 |
ORF3a | 261 | E261X | Gaa | Taa | 3 | 3 | P.1.14 | 0.000143 |
ORF3a | 261 | E261X | Gaa | Taa | 3 | 3 | Q.1 | 0.000379 |
ORF3a | 261 | E261del | GAA | --- | 3 | 3 | R.1 | 0.00027 |
ORF3a | 261 | E261del2 | GAa | --a | 1 | 2 | All | 0 |
ORF3a | 261 | E261del2 | GAA | --N | 1 | 2 | All | 0 |
ORF3a | 261 | E261G | gAa | gGa | 2 | 2 | AY.102 | 0.000053 |
ORF3a | 261 | E261V | gAa | gTa | 1 | 2 | AY.117 | 0.000085 |
ORF3a | 261 | E261V | gAA | gTT | 1 | 2 | AY.117 | 0.000085 |
ORF3a | 261 | E261X | Gaa | Taa | 2 | 2 | AY.119 | 0.000071 |
ORF3a | 261 | E261del | GAA | --- | 2 | 2 | AY.12 | 0.000632 |
ORF3a | 261 | E261A | gAa | gCa | 2 | 2 | AY.120 | 0.000074 |
ORF3a | 261 | E261X | Gaa | Taa | 2 | 2 | AY.20 | 0.000078 |
ORF3a | 261 | E261V | gAa | gTa | 2 | 2 | AY.26 | 0.000057 |
ORF3a | 261 | E261X | Gaa | Taa | 2 | 2 | AY.3 | 0.00002 |
ORF3a | 261 | E261del | GAA | --- | 2 | 2 | AY.3.1 | 0.000171 |
ORF3a | 261 | E261X | Gaa | Taa | 2 | 2 | AY.33 | 0.000134 |
ORF3a | 261 | E261G | gAa | gGa | 2 | 2 | AY.4.2 | 0.000043 |
ORF3a | 261 | E261X | Gaa | Taa | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF3a | 261 | E261X | Gaa | Taa | 2 | 2 | AY.4.5 | 0.000215 |
ORF3a | 261 | E261G | gAa | gGa | 2 | 2 | AY.43 | 0.000009 |
ORF3a | 261 | E261E | gaA | gaG | 2 | 2 | AY.43 | 0.000009 |
ORF3a | 261 | E261G | gAa | gGa | 2 | 2 | AY.44 | 0.000012 |
ORF3a | 261 | E261K | Gaa | Aaa | 2 | 2 | AY.45 | 0.000243 |
ORF3a | 261 | E261G | gAa | gGa | 2 | 2 | AY.45 | 0.000243 |
ORF3a | 261 | E261V | gAa | gTa | 2 | 2 | AY.47 | 0.000062 |
ORF3a | 261 | E261del | GAA | --- | 2 | 2 | AY.75.1 | 0.000361 |
ORF3a | 261 | E261X | Gaa | Taa | 2 | 2 | AY.85 | 0.000854 |
ORF3a | 261 | E261X | Gaa | Taa | 2 | 2 | AY.92 | 0.000575 |
ORF3a | 261 | E261X | Gaa | Taa | 2 | 2 | AY.93 | 0.000546 |
ORF3a | 261 | E261K | Gaa | Aaa | 2 | 2 | AY.97 | 0.003401 |
ORF3a | 261 | E261del | GAA | --- | 2 | 2 | AY.99 | 0.002099 |
ORF3a | 261 | E261K | Gaa | Aaa | 2 | 2 | B.1 | 0.000018 |
ORF3a | 261 | E261V | gAa | gTa | 2 | 2 | B.1 | 0.000018 |
ORF3a | 261 | E261X | Gaa | Taa | 2 | 2 | B.1.1.10 | 0.00223 |
ORF3a | 261 | E261G | gAa | gGa | 2 | 2 | B.1.1.27 | 0.011299 |
ORF3a | 261 | E261del | GAA | --- | 2 | 2 | B.1.1.28 | 0.000622 |
ORF3a | 261 | E261X | Gaa | Taa | 2 | 2 | B.1.1.307 | 0.005063 |
ORF3a | 261 | E261V | gAa | gTa | 1 | 2 | B.1.1.332 | 0.03125 |
ORF3a | 261 | E261V | gAA | gTT | 1 | 2 | B.1.1.332 | 0.03125 |
ORF3a | 261 | E261X | Gaa | Taa | 2 | 2 | B.1.1.369 | 0.000892 |
ORF3a | 261 | E261X | Gaa | Taa | 2 | 2 | B.1.157 | 0.00597 |
ORF3a | 261 | E261del | GAA | --- | 2 | 2 | B.1.160 | 0.000062 |
ORF3a | 261 | E261E | gaA | gaG | 2 | 2 | B.1.177 | 0.000026 |
ORF3a | 261 | E261del | GAA | --- | 2 | 2 | B.1.177.4 | 0.000422 |
ORF3a | 261 | E261G | gAa | gGa | 2 | 2 | B.1.177.54 | 0.001213 |
ORF3a | 261 | E261G | gAa | gGa | 2 | 2 | B.1.177.60 | 0.000437 |
ORF3a | 261 | E261G | gAa | gGa | 2 | 2 | B.1.177.62 | 0.002384 |
ORF3a | 261 | E261del | GAA | --- | 2 | 2 | B.1.177.7 | 0.00033 |
ORF3a | 261 | E261X | Gaa | Taa | 2 | 2 | B.1.189 | 0.008584 |
ORF3a | 261 | E261V | gAa | gTa | 2 | 2 | B.1.2 | 0.000018 |
ORF3a | 261 | E261del | GAA | --- | 2 | 2 | B.1.243 | 0.000139 |
ORF3a | 261 | E261K | Gaa | Aaa | 2 | 2 | B.1.258 | 0.000133 |
ORF3a | 261 | E261E | gaA | gaG | 2 | 2 | B.1.36 | 0.000292 |
ORF3a | 261 | E261del | GAA | --- | 2 | 2 | B.1.36.1 | 0.002281 |
ORF3a | 261 | E261X | Gaa | Taa | 2 | 2 | B.1.36.16 | 0.002849 |
ORF3a | 261 | E261G | gAa | gGa | 2 | 2 | B.1.36.18 | 0.00084 |
ORF3a | 261 | E261Q | Gaa | Caa | 2 | 2 | B.1.36.29 | 0.001035 |
ORF3a | 261 | E261K | Gaa | Aaa | 2 | 2 | B.1.409 | 0.001563 |
ORF3a | 261 | E261X | Gaa | Taa | 2 | 2 | B.1.429 | 0.000047 |
ORF3a | 261 | E261X | Gaa | Taa | 2 | 2 | B.1.468 | 0.011429 |
ORF3a | 261 | E261Q | Gaa | Caa | 2 | 2 | B.1.469 | 0.00722 |
ORF3a | 261 | E261X | Gaa | Taa | 2 | 2 | B.1.537 | 0.04 |
ORF3a | 261 | E261G | gAa | gGa | 2 | 2 | B.1.595 | 0.000522 |
ORF3a | 261 | E261G | gAa | gGa | 2 | 2 | B.1.605 | 0.011905 |
ORF3a | 261 | E261K | Gaa | Aaa | 2 | 2 | B.1.621 | 0.000177 |
ORF3a | 261 | E261X | Gaa | Taa | 2 | 2 | B.40 | 0.000729 |
ORF3a | 261 | E261del | GAA | --- | 2 | 2 | C.26 | 0.014706 |
ORF3a | 261 | E261V | gAa | gTa | 1 | 2 | P.1.7 | 0.000319 |
ORF3a | 261 | E261V | gAA | gTT | 1 | 2 | P.1.7 | 0.000319 |
ORF3a | 261 | E261V | gAA | gTT | 1 | 2 | P.2 | 0.000187 |
ORF3a | 261 | E261V | gAa | gTa | 1 | 2 | P.2 | 0.000187 |
ORF3a | 261 | E261del | GAA | --- | 2 | 2 | Q.1 | 0.000253 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | AU.1 | 0.001266 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | AY.10 | 0.00053 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 261 | E261K | Gaa | Aaa | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 261 | E261K | Gaa | Aaa | 1 | 1 | AY.101 | 0.00049 |
ORF3a | 261 | E261K | Gaa | Aaa | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 261 | E261D | gaA | gaT | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 261 | E261G | gAa | gGa | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 261 | E261K | Gaa | Aaa | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 261 | E261K | Gaa | Aaa | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 261 | E261D | gaA | gaT | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 261 | E261K | Gaa | Aaa | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 261 | E261E | gaA | gaG | 1 | 1 | AY.121 | 0.000135 |
ORF3a | 261 | E261A | gAa | gCa | 1 | 1 | AY.121 | 0.000135 |
ORF3a | 261 | E261K | Gaa | Aaa | 1 | 1 | AY.121 | 0.000135 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | AY.16.1 | 0.00047 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 261 | E261G | gAa | gGa | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 261 | E261V | gAa | gTa | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 261 | E261E | gaA | gaG | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 261 | E261del1 | Gaa | -aa | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 261 | E261G | gAa | gGa | 1 | 1 | AY.27 | 0.000065 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | AY.27 | 0.000065 |
ORF3a | 261 | E261E | gaA | gaG | 1 | 1 | AY.27 | 0.000065 |
ORF3a | 261 | E261del2 | GAa | --a | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 261 | E261A | gAa | gCa | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 261 | E261G | gAa | gGa | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 261 | E261E | gaA | gaG | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 261 | E261A | gAa | gCa | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 261 | E261K | Gaa | Aaa | 1 | 1 | AY.36 | 0.000148 |
ORF3a | 261 | E261A | gAa | gCa | 1 | 1 | AY.36 | 0.000148 |
ORF3a | 261 | E261Q | Gaa | Caa | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 261 | E261A | gAa | gCa | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 261 | E261del1 | Gaa | -aa | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 261 | E261A | gAa | gCa | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF3a | 261 | E261V | gAa | gTa | 1 | 1 | AY.4.4 | 0.000409 |
ORF3a | 261 | E261del1 | gaA | ga- | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | AY.45 | 0.000122 |
ORF3a | 261 | E261Q | Gaa | Caa | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 261 | E261V | gAa | gTa | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | AY.46.2 | 0.000635 |
ORF3a | 261 | E261G | gAa | gGa | 1 | 1 | AY.46.2 | 0.000635 |
ORF3a | 261 | E261E | gaA | gaG | 1 | 1 | AY.46.4 | 0.000165 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | AY.46.4 | 0.000165 |
ORF3a | 261 | E261G | gAa | gGa | 1 | 1 | AY.46.5 | 0.000198 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | AY.47 | 0.000031 |
ORF3a | 261 | E261V | gAa | gTa | 1 | 1 | AY.5.3 | 0.000337 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | AY.53 | 0.000288 |
ORF3a | 261 | E261G | gAa | gGa | 1 | 1 | AY.64 | 0.000595 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 261 | E261G | gAa | gGa | 1 | 1 | AY.69 | 0.000187 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | AY.69 | 0.000187 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | AY.74 | 0.000116 |
ORF3a | 261 | E261G | gAa | gGa | 1 | 1 | AY.75.1 | 0.00018 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | AY.75.1 | 0.00018 |
ORF3a | 261 | E261V | gAa | gTa | 1 | 1 | AY.82 | 0.001357 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | AY.82 | 0.001357 |
ORF3a | 261 | E261K | Gaa | Aaa | 1 | 1 | AY.9.1 | 0.000084 |
ORF3a | 261 | E261A | gAa | gCa | 1 | 1 | AY.91 | 0.00073 |
ORF3a | 261 | E261Q | Gaa | Caa | 1 | 1 | B | 0.000128 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | B | 0.000128 |
ORF3a | 261 | E261G | gAa | gGa | 1 | 1 | B.1 | 0.000009 |
ORF3a | 261 | E261E | gaA | gaG | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 261 | E261A | gAa | gCa | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 261 | E261G | gAa | gGa | 1 | 1 | B.1.1.186 | 0.003436 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | B.1.1.216 | 0.00089 |
ORF3a | 261 | E261G | gAa | gGa | 1 | 1 | B.1.1.261 | 0.008621 |
ORF3a | 261 | E261K | Gaa | Aaa | 1 | 1 | B.1.1.277 | 0.000759 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | B.1.1.28 | 0.000311 |
ORF3a | 261 | E261K | Gaa | Aaa | 1 | 1 | B.1.1.284 | 0.000107 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | B.1.1.285 | 0.006536 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | B.1.1.304 | 0.002809 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | B.1.1.317 | 0.000412 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF3a | 261 | E261D | gaA | gaT | 1 | 1 | B.1.1.332 | 0.03125 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | B.1.1.372 | 0.000689 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | B.1.1.432 | 0.001266 |
ORF3a | 261 | E261V | gAa | gTa | 1 | 1 | B.1.1.434 | 0.000349 |
ORF3a | 261 | E261G | gAa | gGa | 1 | 1 | B.1.1.434 | 0.000349 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | B.1.1.44 | 0.00241 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | B.1.1.517 | 0.006803 |
ORF3a | 261 | E261del2 | GAA | --N | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 261 | E261E | gaA | gaG | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | B.1.1.63 | 0.000386 |
ORF3a | 261 | E261del1 | Gaa | -aa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 261 | E261Q | Gaa | Caa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | B.1.113 | 0.015625 |
ORF3a | 261 | E261K | Gaa | Aaa | 1 | 1 | B.1.13 | 0.002375 |
ORF3a | 261 | E261A | gAa | gCa | 1 | 1 | B.1.160.26 | 0.002421 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | B.1.177.24 | 0.001295 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | B.1.177.44 | 0.000519 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | B.1.177.60 | 0.000218 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | B.1.177.73 | 0.000566 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF3a | 261 | E261V | gAa | gTa | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 261 | E261E | gaA | gaG | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 261 | E261V | gAa | gTa | 1 | 1 | B.1.234 | 0.000132 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | B.1.237 | 0.004975 |
ORF3a | 261 | E261G | gAa | gGa | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 261 | E261Q | Gaa | Caa | 1 | 1 | B.1.247 | 0.014925 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | B.1.265 | 0.001271 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | B.1.298 | 0.002114 |
ORF3a | 261 | E261K | Gaa | Aaa | 1 | 1 | B.1.311 | 0.000275 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | B.1.320 | 0.001245 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | B.1.338 | 0.008621 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | B.1.349 | 0.000715 |
ORF3a | 261 | E261K | Gaa | Aaa | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | B.1.36.19 | 0.009259 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | B.1.36.2 | 0.010753 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | B.1.36.22 | 0.001208 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | B.1.36.24 | 0.006173 |
ORF3a | 261 | E261K | Gaa | Aaa | 1 | 1 | B.1.36.27 | 0.000763 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF3a | 261 | E261del1 | Gaa | -aa | 1 | 1 | B.1.36.29 | 0.000517 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | B.1.36.31 | 0.001751 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | B.1.36.8 | 0.001 |
ORF3a | 261 | E261Q | Gaa | Caa | 1 | 1 | B.1.362 | 0.001541 |
ORF3a | 261 | E261V | gAa | gTa | 1 | 1 | B.1.369 | 0.000285 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | B.1.380 | 0.006623 |
ORF3a | 261 | E261E | gaA | gaG | 1 | 1 | B.1.396 | 0.000706 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | B.1.432 | 0.011236 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | B.1.466 | 0.023256 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | B.1.485 | 0.014925 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | B.1.497 | 0.000315 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | B.1.509 | 0.000866 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | B.1.521 | 0.004975 |
ORF3a | 261 | E261K | Gaa | Aaa | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 261 | E261K | Gaa | Aaa | 1 | 1 | B.1.526 | 0.000024 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | B.1.548 | 0.035714 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | B.1.551 | 0.00129 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | B.1.561 | 0.000397 |
ORF3a | 261 | E261K | Gaa | Aaa | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | B.1.609 | 0.000479 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 261 | E261E | gaA | gaG | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF3a | 261 | E261K | Gaa | Aaa | 1 | 1 | B.1.637 | 0.000073 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | B.1.8 | 0.001972 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | B.4.1 | 0.018868 |
ORF3a | 261 | E261Q | Gaa | Caa | 1 | 1 | B.55 | 0.00295 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | C.36 | 0.000911 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | D.2 | 0.000075 |
ORF3a | 261 | E261K | Gaa | Aaa | 1 | 1 | D.2 | 0.000075 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | P.1 | 0.000016 |
ORF3a | 261 | E261Q | Gaa | Caa | 1 | 1 | P.1.12 | 0.000484 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 261 | E261K | Gaa | Aaa | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 261 | E261K | Gaa | Aaa | 1 | 1 | P.1.16 | 0.000374 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | P.1.17 | 0.000162 |
ORF3a | 261 | E261D | gaA | gaT | 1 | 1 | P.1.7 | 0.000319 |
ORF3a | 261 | E261D | gaA | gaT | 1 | 1 | P.2 | 0.000187 |
ORF3a | 261 | E261X | Gaa | Taa | 1 | 1 | P.2 | 0.000187 |
ORF3a | 261 | E261del | GAA | --- | 1 | 1 | P.2 | 0.000187 |
ORF3a | 261 | E261K | Gaa | Aaa | 1 | 1 | P.2 | 0.000187 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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