CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 260 | M260I | nonsyn | atG | atT | 4240 | 3394 | 0.800472 | 26170-26172 | |
ORF3a | 260 | M260I | nonsyn | atG | atA | 4240 | 841 | 0.198349 | 26170-26172 | |
ORF3a | 260 | M260I | nonsyn | atG | atC | 4240 | 5 | 0.00117925 | 26170-26172 | |
ORF3a | 260 | M260K | nonsyn | aTg | aAg | 1144 | 1138 | 0.994755 | 26170-26172 | |
ORF3a | 260 | M260K | nonsyn | aTG | aAA | 1144 | 6 | 0.00524476 | 26170-26172 | |
ORF3a | 260 | M260del | del | ATG | --- | 852 | 852 | 1 | 26170-26172 | |
ORF3a | 260 | M260T | nonsyn | aTg | aCg | 695 | 695 | 1 | 26170-26172 | |
ORF3a | 260 | M260L | nonsyn | Atg | Ttg | 550 | 464 | 0.843636 | 26170-26172 | |
ORF3a | 260 | M260L | nonsyn | Atg | Ctg | 550 | 86 | 0.156364 | 26170-26172 | |
ORF3a | 260 | M260V | nonsyn | Atg | Gtg | 521 | 520 | 0.998081 | 26170-26172 | |
ORF3a | 260 | M260V | nonsyn | AtG | GtT | 521 | 1 | 0.00191939 | 26170-26172 | |
ORF3a | 260 | M260N | nonsyn | aTG | aAT | 45 | 37 | 0.822222 | 26170-26172 | |
ORF3a | 260 | M260N | nonsyn | aTG | aAC | 45 | 8 | 0.177778 | 26170-26172 | |
ORF3a | 260 | M260R | nonsyn | aTg | aGg | 19 | 18 | 0.947368 | 26170-26172 | |
ORF3a | 260 | M260R | nonsyn | ATg | CGg | 19 | 1 | 0.0526316 | 26170-26172 | |
ORF3a | 260 | M260del1 | del | atG | at- | 15 | 7 | 0.466667 | 26170-26172 | |
ORF3a | 260 | M260del1 | del | Atg | -tg | 15 | 7 | 0.466667 | 26170-26172 | |
ORF3a | 260 | M260del1 | del | aTG | aC- | 15 | 1 | 0.0666667 | 26170-26172 | |
ORF3a | 260 | M260P | nonsyn | ATg | CCg | 1 | 1 | 1 | 26170-26172 | |
ORF3a | 260 | M260del2 | del | ATg | --g | 1 | 1 | 1 | 26170-26172 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 260 | M260I | atG | atT | 3394 | 4240 | All | 0.000649 |
ORF3a | 260 | M260I | atG | atA | 841 | 4240 | All | 0.000161 |
ORF3a | 260 | M260I | atG | atC | 5 | 4240 | All | 0.000001 |
ORF3a | 260 | M260K | aTg | aAg | 1138 | 1144 | All | 0.000218 |
ORF3a | 260 | M260K | aTG | aAA | 6 | 1144 | All | 0.000001 |
ORF3a | 260 | M260del | ATG | --- | 852 | 852 | All | 0.000163 |
ORF3a | 260 | M260I | atG | atT | 799 | 832 | B.1.617.2 | 0.003009 |
ORF3a | 260 | M260I | atG | atA | 33 | 832 | B.1.617.2 | 0.000124 |
ORF3a | 260 | M260I | atG | atT | 611 | 785 | AY.3 | 0.006077 |
ORF3a | 260 | M260I | atG | atA | 174 | 785 | AY.3 | 0.001731 |
ORF3a | 260 | M260T | aTg | aCg | 695 | 695 | All | 0.000133 |
ORF3a | 260 | M260L | Atg | Ttg | 464 | 550 | All | 0.000089 |
ORF3a | 260 | M260L | Atg | Ctg | 86 | 550 | All | 0.000016 |
ORF3a | 260 | M260V | Atg | Gtg | 520 | 521 | All | 0.000099 |
ORF3a | 260 | M260V | AtG | GtT | 1 | 521 | All | 0 |
ORF3a | 260 | M260T | aTg | aCg | 431 | 431 | AY.44 | 0.002623 |
ORF3a | 260 | M260I | atG | atT | 228 | 407 | AY.4 | 0.000355 |
ORF3a | 260 | M260I | atG | atA | 179 | 407 | AY.4 | 0.000279 |
ORF3a | 260 | M260I | atG | atT | 335 | 350 | AY.43 | 0.001484 |
ORF3a | 260 | M260I | atG | atA | 15 | 350 | AY.43 | 0.000066 |
ORF3a | 260 | M260I | atG | atT | 279 | 279 | AY.102 | 0.007397 |
ORF3a | 260 | M260I | atG | atT | 279 | 279 | P.6 | 0.877358 |
ORF3a | 260 | M260L | Atg | Ttg | 255 | 261 | B.1.617.2 | 0.00096 |
ORF3a | 260 | M260L | Atg | Ctg | 6 | 261 | B.1.617.2 | 0.000023 |
ORF3a | 260 | M260I | atG | atA | 249 | 249 | AY.4.2 | 0.0054 |
ORF3a | 260 | M260V | Atg | Gtg | 160 | 160 | B.1.1.7 | 0.000143 |
ORF3a | 260 | M260K | aTg | aAg | 136 | 137 | AY.4.2 | 0.00295 |
ORF3a | 260 | M260K | aTG | aAA | 1 | 137 | AY.4.2 | 0.000022 |
ORF3a | 260 | M260I | atG | atT | 111 | 132 | B.1.1.7 | 0.000099 |
ORF3a | 260 | M260I | atG | atA | 20 | 132 | B.1.1.7 | 0.000018 |
ORF3a | 260 | M260I | atG | atC | 1 | 132 | B.1.1.7 | 0.000001 |
ORF3a | 260 | M260del | ATG | --- | 116 | 116 | AY.26 | 0.003284 |
ORF3a | 260 | M260L | Atg | Ttg | 106 | 106 | B.1.36.25 | 0.233996 |
ORF3a | 260 | M260I | atG | atT | 94 | 95 | AY.39 | 0.002323 |
ORF3a | 260 | M260I | atG | atA | 1 | 95 | AY.39 | 0.000025 |
ORF3a | 260 | M260K | aTg | aAg | 94 | 94 | P.1 | 0.001481 |
ORF3a | 260 | M260del | ATG | --- | 91 | 91 | B.1 | 0.000834 |
ORF3a | 260 | M260K | aTg | aAg | 89 | 89 | B.1.1.7 | 0.00008 |
ORF3a | 260 | M260V | Atg | Gtg | 85 | 85 | B.1.575 | 0.025789 |
ORF3a | 260 | M260K | aTg | aAg | 85 | 85 | B.1.617.2 | 0.00032 |
ORF3a | 260 | M260V | Atg | Gtg | 82 | 82 | AY.5 | 0.001693 |
ORF3a | 260 | M260K | aTg | aAg | 78 | 79 | AY.4 | 0.000121 |
ORF3a | 260 | M260K | aTG | aAA | 1 | 79 | AY.4 | 0.000002 |
ORF3a | 260 | M260del | ATG | --- | 78 | 78 | B.1.1.7 | 0.00007 |
ORF3a | 260 | M260I | atG | atT | 60 | 68 | AY.44 | 0.000365 |
ORF3a | 260 | M260I | atG | atA | 8 | 68 | AY.44 | 0.000049 |
ORF3a | 260 | M260K | aTg | aAg | 60 | 60 | AY.44 | 0.000365 |
ORF3a | 260 | M260del | ATG | --- | 59 | 59 | AY.44 | 0.000359 |
ORF3a | 260 | M260del | ATG | --- | 56 | 56 | AY.4 | 0.000087 |
ORF3a | 260 | M260K | aTg | aAg | 53 | 53 | B.1.1.218 | 0.407692 |
ORF3a | 260 | M260I | atG | atT | 49 | 51 | B.1.2 | 0.000431 |
ORF3a | 260 | M260I | atG | atA | 2 | 51 | B.1.2 | 0.000018 |
ORF3a | 260 | M260N | aTG | aAT | 37 | 45 | All | 0.000007 |
ORF3a | 260 | M260N | aTG | aAC | 8 | 45 | All | 0.000002 |
ORF3a | 260 | M260del | ATG | --- | 45 | 45 | AY.25 | 0.000271 |
ORF3a | 260 | M260K | aTg | aAg | 41 | 41 | AY.120 | 0.001524 |
ORF3a | 260 | M260K | aTg | aAg | 41 | 41 | AY.14 | 0.003609 |
ORF3a | 260 | M260K | aTg | aAg | 39 | 39 | B.1.408 | 0.143911 |
ORF3a | 260 | M260T | aTg | aCg | 36 | 36 | B.1.1.7 | 0.000032 |
ORF3a | 260 | M260del | ATG | --- | 36 | 36 | B.1.617.2 | 0.000136 |
ORF3a | 260 | M260K | aTg | aAg | 33 | 34 | AY.3 | 0.000328 |
ORF3a | 260 | M260K | aTG | aAA | 1 | 34 | AY.3 | 0.00001 |
ORF3a | 260 | M260T | aTg | aCg | 33 | 33 | AY.4 | 0.000051 |
ORF3a | 260 | M260L | Atg | Ttg | 22 | 32 | B.1.1.7 | 0.00002 |
ORF3a | 260 | M260L | Atg | Ctg | 10 | 32 | B.1.1.7 | 0.000009 |
ORF3a | 260 | M260I | atG | atT | 30 | 31 | AY.113 | 0.004272 |
ORF3a | 260 | M260I | atG | atA | 1 | 31 | AY.113 | 0.000142 |
ORF3a | 260 | M260del | ATG | --- | 31 | 31 | AY.47 | 0.000964 |
ORF3a | 260 | M260I | atG | atT | 31 | 31 | B.1.258.17 | 0.003223 |
ORF3a | 260 | M260K | aTg | aAg | 29 | 29 | AY.103 | 0.00018 |
ORF3a | 260 | M260I | atG | atT | 21 | 29 | AY.103 | 0.00013 |
ORF3a | 260 | M260I | atG | atA | 8 | 29 | AY.103 | 0.00005 |
ORF3a | 260 | M260I | atG | atT | 24 | 29 | AY.114 | 0.005547 |
ORF3a | 260 | M260I | atG | atA | 5 | 29 | AY.114 | 0.001156 |
ORF3a | 260 | M260I | atG | atT | 26 | 29 | AY.34 | 0.002521 |
ORF3a | 260 | M260I | atG | atC | 3 | 29 | AY.34 | 0.000291 |
ORF3a | 260 | M260L | Atg | Ctg | 27 | 29 | AY.4 | 0.000042 |
ORF3a | 260 | M260L | Atg | Ttg | 2 | 29 | AY.4 | 0.000003 |
ORF3a | 260 | M260I | atG | atA | 18 | 28 | AY.25 | 0.000108 |
ORF3a | 260 | M260I | atG | atT | 10 | 28 | AY.25 | 0.00006 |
ORF3a | 260 | M260del | ATG | --- | 27 | 27 | AY.13 | 0.004346 |
ORF3a | 260 | M260V | Atg | Gtg | 27 | 27 | B.1.2 | 0.000238 |
ORF3a | 260 | M260K | aTg | aAg | 24 | 26 | AY.25 | 0.000144 |
ORF3a | 260 | M260K | aTG | aAA | 2 | 26 | AY.25 | 0.000012 |
ORF3a | 260 | M260K | aTg | aAg | 26 | 26 | B.1.160 | 0.000811 |
ORF3a | 260 | M260T | aTg | aCg | 25 | 25 | B.1.617.2 | 0.000094 |
ORF3a | 260 | M260I | atG | atT | 23 | 23 | AY.39.1.1 | 0.016667 |
ORF3a | 260 | M260N | aTG | aAT | 23 | 23 | B.1.1.218 | 0.176923 |
ORF3a | 260 | M260V | Atg | Gtg | 22 | 22 | AY.29 | 0.000347 |
ORF3a | 260 | M260I | atG | atA | 22 | 22 | B.1.1.345 | 0.956522 |
ORF3a | 260 | M260del | ATG | --- | 21 | 21 | AY.3 | 0.000209 |
ORF3a | 260 | M260del | ATG | --- | 20 | 20 | AY.51 | 0.018182 |
ORF3a | 260 | M260I | atG | atT | 20 | 20 | AY.9.2 | 0.000735 |
ORF3a | 260 | M260K | aTg | aAg | 20 | 20 | B.1.311 | 0.005491 |
ORF3a | 260 | M260R | aTg | aGg | 18 | 19 | All | 0.000003 |
ORF3a | 260 | M260R | ATg | CGg | 1 | 19 | All | 0 |
ORF3a | 260 | M260del | ATG | --- | 19 | 19 | AY.43 | 0.000084 |
ORF3a | 260 | M260L | Atg | Ttg | 19 | 19 | AZ.2 | 0.015599 |
ORF3a | 260 | M260I | atG | atT | 10 | 19 | B.1 | 0.000092 |
ORF3a | 260 | M260I | atG | atA | 9 | 19 | B.1 | 0.000082 |
ORF3a | 260 | M260del | ATG | --- | 19 | 19 | B.1.2 | 0.000167 |
ORF3a | 260 | M260V | Atg | Gtg | 17 | 17 | AY.4 | 0.000026 |
ORF3a | 260 | M260I | atG | atT | 16 | 17 | B.1.429 | 0.000376 |
ORF3a | 260 | M260I | atG | atA | 1 | 17 | B.1.429 | 0.000024 |
ORF3a | 260 | M260T | aTg | aCg | 16 | 16 | AY.103 | 0.000099 |
ORF3a | 260 | M260I | atG | atT | 15 | 16 | AY.23 | 0.001046 |
ORF3a | 260 | M260I | atG | atA | 1 | 16 | AY.23 | 0.00007 |
ORF3a | 260 | M260T | aTg | aCg | 16 | 16 | AY.99.2 | 0.001475 |
ORF3a | 260 | M260V | Atg | Gtg | 16 | 16 | B.1.177.85 | 0.086957 |
ORF3a | 260 | M260del1 | atG | at- | 7 | 15 | All | 0.000001 |
ORF3a | 260 | M260del1 | Atg | -tg | 7 | 15 | All | 0.000001 |
ORF3a | 260 | M260del1 | aTG | aC- | 1 | 15 | All | 0 |
ORF3a | 260 | M260K | aTg | aAg | 15 | 15 | AY.102 | 0.000398 |
ORF3a | 260 | M260I | atG | atT | 15 | 15 | AY.120 | 0.000558 |
ORF3a | 260 | M260K | aTg | aAg | 15 | 15 | AY.47 | 0.000467 |
ORF3a | 260 | M260I | atG | atT | 15 | 15 | AY.99.2 | 0.001382 |
ORF3a | 260 | M260I | atG | atA | 8 | 14 | AY.116 | 0.002294 |
ORF3a | 260 | M260I | atG | atT | 6 | 14 | AY.116 | 0.001721 |
ORF3a | 260 | M260I | atG | atA | 13 | 13 | AY.46.6 | 0.000939 |
ORF3a | 260 | M260K | aTg | aAg | 13 | 13 | AY.75 | 0.000728 |
ORF3a | 260 | M260del | ATG | --- | 13 | 13 | B.1.177.21 | 0.000994 |
ORF3a | 260 | M260I | atG | atT | 13 | 13 | B.1.36.1 | 0.014823 |
ORF3a | 260 | M260I | atG | atT | 10 | 12 | AY.117 | 0.000845 |
ORF3a | 260 | M260I | atG | atA | 2 | 12 | AY.117 | 0.000169 |
ORF3a | 260 | M260L | Atg | Ctg | 12 | 12 | AY.34 | 0.001164 |
ORF3a | 260 | M260del | ATG | --- | 12 | 12 | AY.5 | 0.000248 |
ORF3a | 260 | M260I | atG | atA | 7 | 12 | B.1.526 | 0.000165 |
ORF3a | 260 | M260I | atG | atT | 5 | 12 | B.1.526 | 0.000118 |
ORF3a | 260 | M260T | aTg | aCg | 12 | 12 | P.1 | 0.000189 |
ORF3a | 260 | M260del | ATG | --- | 11 | 11 | AY.103 | 0.000068 |
ORF3a | 260 | M260I | atG | atT | 6 | 11 | AY.29 | 0.000095 |
ORF3a | 260 | M260I | atG | atA | 5 | 11 | AY.29 | 0.000079 |
ORF3a | 260 | M260K | aTg | aAg | 11 | 11 | AY.43 | 0.000049 |
ORF3a | 260 | M260T | aTg | aCg | 11 | 11 | AY.98.1 | 0.000533 |
ORF3a | 260 | M260I | atG | atT | 9 | 11 | B.1.1 | 0.000163 |
ORF3a | 260 | M260I | atG | atA | 2 | 11 | B.1.1 | 0.000036 |
ORF3a | 260 | M260K | aTg | aAg | 11 | 11 | B.1.258 | 0.000732 |
ORF3a | 260 | M260I | atG | atT | 10 | 11 | B.1.36.29 | 0.005173 |
ORF3a | 260 | M260I | atG | atA | 1 | 11 | B.1.36.29 | 0.000517 |
ORF3a | 260 | M260del | ATG | --- | 11 | 11 | B.1.621 | 0.000974 |
ORF3a | 260 | M260I | atG | atT | 9 | 11 | P.1 | 0.000142 |
ORF3a | 260 | M260I | atG | atA | 2 | 11 | P.1 | 0.000032 |
ORF3a | 260 | M260K | aTg | aAg | 11 | 11 | R.1 | 0.00099 |
ORF3a | 260 | M260K | aTg | aAg | 10 | 10 | AY.118 | 0.000626 |
ORF3a | 260 | M260K | aTg | aAg | 10 | 10 | AY.23 | 0.000697 |
ORF3a | 260 | M260T | aTg | aCg | 10 | 10 | AY.25 | 0.00006 |
ORF3a | 260 | M260I | atG | atT | 10 | 10 | AY.46 | 0.001041 |
ORF3a | 260 | M260I | atG | atT | 9 | 10 | AY.5 | 0.000186 |
ORF3a | 260 | M260I | atG | atA | 1 | 10 | AY.5 | 0.000021 |
ORF3a | 260 | M260K | aTg | aAg | 10 | 10 | AY.99.2 | 0.000922 |
ORF3a | 260 | M260K | aTg | aAg | 10 | 10 | B.1 | 0.000092 |
ORF3a | 260 | M260L | Atg | Ttg | 9 | 10 | B.1.160 | 0.000281 |
ORF3a | 260 | M260L | Atg | Ctg | 1 | 10 | B.1.160 | 0.000031 |
ORF3a | 260 | M260I | atG | atA | 9 | 10 | B.1.258 | 0.000599 |
ORF3a | 260 | M260I | atG | atT | 1 | 10 | B.1.258 | 0.000067 |
ORF3a | 260 | M260T | aTg | aCg | 9 | 9 | AY.29 | 0.000142 |
ORF3a | 260 | M260V | Atg | Gtg | 9 | 9 | AY.3 | 0.00009 |
ORF3a | 260 | M260K | aTg | aAg | 9 | 9 | AY.38 | 0.004493 |
ORF3a | 260 | M260V | Atg | Gtg | 9 | 9 | AY.44 | 0.000055 |
ORF3a | 260 | M260I | atG | atT | 9 | 9 | AY.7.1 | 0.001014 |
ORF3a | 260 | M260L | Atg | Ttg | 9 | 9 | B.1.1.519 | 0.000357 |
ORF3a | 260 | M260del | ATG | --- | 9 | 9 | B.1.177 | 0.000119 |
ORF3a | 260 | M260K | aTg | aAg | 9 | 9 | B.1.258.17 | 0.000936 |
ORF3a | 260 | M260T | aTg | aCg | 8 | 8 | AY.102 | 0.000212 |
ORF3a | 260 | M260I | atG | atT | 8 | 8 | AY.46.4 | 0.001316 |
ORF3a | 260 | M260T | aTg | aCg | 8 | 8 | AY.75 | 0.000448 |
ORF3a | 260 | M260K | aTg | aAg | 8 | 8 | B.1.1 | 0.000145 |
ORF3a | 260 | M260I | atG | atT | 8 | 8 | B.1.117 | 0.1 |
ORF3a | 260 | M260V | Atg | Gtg | 8 | 8 | B.1.243 | 0.000557 |
ORF3a | 260 | M260K | aTg | aAg | 8 | 8 | B.1.243 | 0.000557 |
ORF3a | 260 | M260del | ATG | --- | 8 | 8 | B.1.311 | 0.002197 |
ORF3a | 260 | M260I | atG | atT | 7 | 7 | A.28 | 0.018519 |
ORF3a | 260 | M260del | ATG | --- | 7 | 7 | AY.118 | 0.000439 |
ORF3a | 260 | M260V | Atg | Gtg | 7 | 7 | AY.20 | 0.000272 |
ORF3a | 260 | M260L | Atg | Ctg | 7 | 7 | AY.25 | 0.000042 |
ORF3a | 260 | M260del | ATG | --- | 7 | 7 | AY.4.2 | 0.000152 |
ORF3a | 260 | M260K | aTg | aAg | 7 | 7 | AY.70 | 0.00146 |
ORF3a | 260 | M260I | atG | atT | 6 | 7 | AY.98 | 0.000474 |
ORF3a | 260 | M260I | atG | atA | 1 | 7 | AY.98 | 0.000079 |
ORF3a | 260 | M260del | ATG | --- | 7 | 7 | AY.98.1 | 0.000339 |
ORF3a | 260 | M260I | atG | atT | 7 | 7 | B.1.1.222 | 0.001428 |
ORF3a | 260 | M260K | aTg | aAg | 7 | 7 | B.1.2 | 0.000062 |
ORF3a | 260 | M260V | Atg | Gtg | 7 | 7 | B.1.429 | 0.000165 |
ORF3a | 260 | M260del | ATG | --- | 7 | 7 | P.1 | 0.00011 |
ORF3a | 260 | M260I | atG | atT | 6 | 6 | AY.107 | 0.002796 |
ORF3a | 260 | M260del | ATG | --- | 6 | 6 | AY.29 | 0.000095 |
ORF3a | 260 | M260I | atG | atA | 5 | 6 | AY.3.1 | 0.000426 |
ORF3a | 260 | M260I | atG | atT | 1 | 6 | AY.3.1 | 0.000085 |
ORF3a | 260 | M260T | aTg | aCg | 6 | 6 | AY.39.1.1 | 0.004348 |
ORF3a | 260 | M260V | Atg | Gtg | 6 | 6 | AY.43 | 0.000027 |
ORF3a | 260 | M260K | aTg | aAg | 6 | 6 | AY.61 | 0.000629 |
ORF3a | 260 | M260del | ATG | --- | 6 | 6 | AY.9 | 0.000406 |
ORF3a | 260 | M260del | ATG | --- | 6 | 6 | B.1.526 | 0.000141 |
ORF3a | 260 | M260T | aTg | aCg | 6 | 6 | B.1.609 | 0.002876 |
ORF3a | 260 | M260V | Atg | Gtg | 6 | 6 | B.1.617.2 | 0.000023 |
ORF3a | 260 | M260R | aTg | aGg | 6 | 6 | P.1 | 0.000095 |
ORF3a | 260 | M260K | aTg | aAg | 5 | 5 | A.1 | 0.001409 |
ORF3a | 260 | M260L | Atg | Ttg | 5 | 5 | AY.117 | 0.000423 |
ORF3a | 260 | M260L | Atg | Ttg | 5 | 5 | AY.118 | 0.000313 |
ORF3a | 260 | M260T | aTg | aCg | 5 | 5 | AY.120 | 0.000186 |
ORF3a | 260 | M260K | aTg | aAg | 5 | 5 | AY.29 | 0.000079 |
ORF3a | 260 | M260del1 | Atg | -tg | 5 | 5 | AY.7 | 0.00098 |
ORF3a | 260 | M260I | atG | atT | 5 | 5 | AY.94 | 0.002213 |
ORF3a | 260 | M260V | Atg | Gtg | 5 | 5 | B.1.1.348 | 0.003981 |
ORF3a | 260 | M260K | aTg | aAg | 5 | 5 | B.1.177.73 | 0.002831 |
ORF3a | 260 | M260del | ATG | --- | 5 | 5 | B.1.389 | 0.00501 |
ORF3a | 260 | M260I | atG | atT | 5 | 5 | B.1.561 | 0.001985 |
ORF3a | 260 | M260del | ATG | --- | 5 | 5 | B.1.637 | 0.000365 |
ORF3a | 260 | M260del | ATG | --- | 4 | 4 | 0.222222 | |
ORF3a | 260 | M260I | atG | atT | 4 | 4 | AY.106 | 0.00134 |
ORF3a | 260 | M260del | ATG | --- | 4 | 4 | AY.120.1 | 0.001284 |
ORF3a | 260 | M260N | aTG | aAT | 4 | 4 | AY.3 | 0.00004 |
ORF3a | 260 | M260I | atG | atT | 4 | 4 | AY.34.1 | 0.00204 |
ORF3a | 260 | M260K | aTg | aAg | 4 | 4 | AY.39 | 0.000099 |
ORF3a | 260 | M260del | ATG | --- | 4 | 4 | AY.39 | 0.000099 |
ORF3a | 260 | M260I | atG | atT | 2 | 4 | AY.4.5 | 0.000215 |
ORF3a | 260 | M260I | atG | atA | 2 | 4 | AY.4.5 | 0.000215 |
ORF3a | 260 | M260K | aTg | aAg | 4 | 4 | AY.53 | 0.00115 |
ORF3a | 260 | M260T | aTg | aCg | 4 | 4 | AY.6 | 0.000165 |
ORF3a | 260 | M260V | Atg | Gtg | 4 | 4 | B.1 | 0.000037 |
ORF3a | 260 | M260I | atG | atT | 4 | 4 | B.1.1.218 | 0.030769 |
ORF3a | 260 | M260N | aTG | aAT | 4 | 4 | B.1.1.464 | 0.005891 |
ORF3a | 260 | M260del | ATG | --- | 4 | 4 | B.1.1.519 | 0.000159 |
ORF3a | 260 | M260del | ATG | --- | 4 | 4 | B.1.160 | 0.000125 |
ORF3a | 260 | M260K | aTg | aAg | 4 | 4 | B.1.177 | 0.000053 |
ORF3a | 260 | M260T | aTg | aCg | 4 | 4 | B.1.2 | 0.000035 |
ORF3a | 260 | M260L | Atg | Ctg | 2 | 4 | B.1.2 | 0.000018 |
ORF3a | 260 | M260L | Atg | Ttg | 2 | 4 | B.1.2 | 0.000018 |
ORF3a | 260 | M260I | atG | atA | 3 | 4 | B.1.234 | 0.000396 |
ORF3a | 260 | M260I | atG | atT | 1 | 4 | B.1.234 | 0.000132 |
ORF3a | 260 | M260I | atG | atT | 4 | 4 | B.1.313 | 0.026316 |
ORF3a | 260 | M260I | atG | atA | 3 | 4 | B.1.351 | 0.000089 |
ORF3a | 260 | M260I | atG | atT | 1 | 4 | B.1.351 | 0.00003 |
ORF3a | 260 | M260del | ATG | --- | 4 | 4 | B.1.525 | 0.000453 |
ORF3a | 260 | M260K | aTg | aAg | 4 | 4 | B.1.575 | 0.001214 |
ORF3a | 260 | M260I | atG | atT | 4 | 4 | B.1.588 | 0.00364 |
ORF3a | 260 | M260K | aTg | aAg | 4 | 4 | P.1.14 | 0.000191 |
ORF3a | 260 | M260I | atG | atT | 4 | 4 | P.4 | 0.015209 |
ORF3a | 260 | M260K | aTg | aAg | 3 | 3 | A.2.5 | 0.001497 |
ORF3a | 260 | M260del | ATG | --- | 3 | 3 | AY.102 | 0.00008 |
ORF3a | 260 | M260L | Atg | Ttg | 2 | 3 | AY.102 | 0.000053 |
ORF3a | 260 | M260L | Atg | Ctg | 1 | 3 | AY.102 | 0.000027 |
ORF3a | 260 | M260R | aTg | aGg | 3 | 3 | AY.103 | 0.000019 |
ORF3a | 260 | M260I | atG | atT | 3 | 3 | AY.12 | 0.000948 |
ORF3a | 260 | M260I | atG | atT | 3 | 3 | AY.26 | 0.000085 |
ORF3a | 260 | M260del | ATG | --- | 3 | 3 | AY.3.1 | 0.000256 |
ORF3a | 260 | M260K | aTg | aAg | 3 | 3 | AY.3.1 | 0.000256 |
ORF3a | 260 | M260T | aTg | aCg | 3 | 3 | AY.39.1 | 0.000119 |
ORF3a | 260 | M260N | aTG | aAC | 3 | 3 | AY.44 | 0.000018 |
ORF3a | 260 | M260K | aTg | aAg | 3 | 3 | AY.45 | 0.000365 |
ORF3a | 260 | M260del | ATG | --- | 3 | 3 | AY.45 | 0.000365 |
ORF3a | 260 | M260I | atG | atT | 3 | 3 | AY.45 | 0.000365 |
ORF3a | 260 | M260K | aTg | aAg | 3 | 3 | AY.46.2 | 0.001906 |
ORF3a | 260 | M260K | aTg | aAg | 3 | 3 | AY.46.6 | 0.000217 |
ORF3a | 260 | M260L | Atg | Ctg | 3 | 3 | AY.47 | 0.000093 |
ORF3a | 260 | M260I | atG | atT | 2 | 3 | AY.61 | 0.00021 |
ORF3a | 260 | M260I | atG | atA | 1 | 3 | AY.61 | 0.000105 |
ORF3a | 260 | M260I | atG | atT | 2 | 3 | AY.68 | 0.000547 |
ORF3a | 260 | M260I | atG | atA | 1 | 3 | AY.68 | 0.000274 |
ORF3a | 260 | M260I | atG | atT | 3 | 3 | AY.75 | 0.000168 |
ORF3a | 260 | M260del | ATG | --- | 3 | 3 | AY.75 | 0.000168 |
ORF3a | 260 | M260I | atG | atT | 3 | 3 | AY.78 | 0.004622 |
ORF3a | 260 | M260I | atG | atT | 2 | 3 | AY.92 | 0.000575 |
ORF3a | 260 | M260I | atG | atA | 1 | 3 | AY.92 | 0.000287 |
ORF3a | 260 | M260I | atG | atT | 3 | 3 | AY.98.1 | 0.000145 |
ORF3a | 260 | M260I | atG | atA | 2 | 3 | B | 0.000256 |
ORF3a | 260 | M260I | atG | atT | 1 | 3 | B | 0.000128 |
ORF3a | 260 | M260N | aTG | aAT | 3 | 3 | B.1 | 0.000027 |
ORF3a | 260 | M260L | Atg | Ctg | 2 | 3 | B.1.1 | 0.000036 |
ORF3a | 260 | M260L | Atg | Ttg | 1 | 3 | B.1.1 | 0.000018 |
ORF3a | 260 | M260I | atG | atT | 3 | 3 | B.1.1.216 | 0.002671 |
ORF3a | 260 | M260K | aTg | aAg | 3 | 3 | B.1.1.416 | 0.002715 |
ORF3a | 260 | M260V | Atg | Gtg | 3 | 3 | B.1.160 | 0.000094 |
ORF3a | 260 | M260del | ATG | --- | 3 | 3 | B.1.177.4 | 0.000633 |
ORF3a | 260 | M260V | Atg | Gtg | 3 | 3 | B.1.234 | 0.000396 |
ORF3a | 260 | M260del | ATG | --- | 3 | 3 | B.1.258.11 | 0.001189 |
ORF3a | 260 | M260I | atG | atT | 2 | 3 | B.1.36 | 0.000292 |
ORF3a | 260 | M260I | atG | atA | 1 | 3 | B.1.36 | 0.000146 |
ORF3a | 260 | M260K | aTg | aAg | 3 | 3 | B.1.400 | 0.001287 |
ORF3a | 260 | M260I | atG | atT | 3 | 3 | B.1.466.2 | 0.001174 |
ORF3a | 260 | M260V | Atg | Gtg | 3 | 3 | B.1.526 | 0.000071 |
ORF3a | 260 | M260N | aTG | aAC | 2 | 3 | B.1.617.2 | 0.000008 |
ORF3a | 260 | M260N | aTG | aAT | 1 | 3 | B.1.617.2 | 0.000004 |
ORF3a | 260 | M260T | aTg | aCg | 3 | 3 | B.1.621 | 0.000266 |
ORF3a | 260 | M260I | atG | atA | 2 | 3 | C.37 | 0.000232 |
ORF3a | 260 | M260I | atG | atT | 1 | 3 | C.37 | 0.000116 |
ORF3a | 260 | M260del | ATG | --- | 3 | 3 | R.1 | 0.00027 |
ORF3a | 260 | M260del1 | atG | at- | 2 | 2 | 0.111111 | |
ORF3a | 260 | M260del | ATG | --- | 2 | 2 | A.27 | 0.003311 |
ORF3a | 260 | M260L | Atg | Ttg | 2 | 2 | AH.2 | 0.024096 |
ORF3a | 260 | M260L | Atg | Ttg | 2 | 2 | AY.103 | 0.000012 |
ORF3a | 260 | M260V | Atg | Gtg | 2 | 2 | AY.103 | 0.000012 |
ORF3a | 260 | M260N | aTG | aAC | 2 | 2 | AY.103 | 0.000012 |
ORF3a | 260 | M260I | atG | atT | 2 | 2 | AY.108 | 0.002205 |
ORF3a | 260 | M260V | Atg | Gtg | 2 | 2 | AY.109 | 0.001479 |
ORF3a | 260 | M260L | Atg | Ttg | 1 | 2 | AY.110 | 0.000113 |
ORF3a | 260 | M260L | Atg | Ctg | 1 | 2 | AY.110 | 0.000113 |
ORF3a | 260 | M260I | atG | atA | 1 | 2 | AY.115 | 0.005208 |
ORF3a | 260 | M260I | atG | atT | 1 | 2 | AY.115 | 0.005208 |
ORF3a | 260 | M260T | aTg | aCg | 2 | 2 | AY.118 | 0.000125 |
ORF3a | 260 | M260I | atG | atT | 2 | 2 | AY.119 | 0.000071 |
ORF3a | 260 | M260K | aTg | aAg | 2 | 2 | AY.119 | 0.000071 |
ORF3a | 260 | M260del | ATG | --- | 2 | 2 | AY.12 | 0.000632 |
ORF3a | 260 | M260L | Atg | Ttg | 2 | 2 | AY.120 | 0.000074 |
ORF3a | 260 | M260K | aTg | aAg | 2 | 2 | AY.20 | 0.000078 |
ORF3a | 260 | M260I | atG | atT | 1 | 2 | AY.20 | 0.000039 |
ORF3a | 260 | M260I | atG | atA | 1 | 2 | AY.20 | 0.000039 |
ORF3a | 260 | M260I | atG | atA | 2 | 2 | AY.21 | 0.003795 |
ORF3a | 260 | M260K | aTg | aAg | 2 | 2 | AY.26 | 0.000057 |
ORF3a | 260 | M260L | Atg | Ctg | 2 | 2 | AY.3 | 0.00002 |
ORF3a | 260 | M260K | aTg | aAg | 2 | 2 | AY.34.1 | 0.00102 |
ORF3a | 260 | M260V | Atg | Gtg | 2 | 2 | AY.36 | 0.000296 |
ORF3a | 260 | M260L | Atg | Ttg | 1 | 2 | AY.4.2 | 0.000022 |
ORF3a | 260 | M260L | Atg | Ctg | 1 | 2 | AY.4.2 | 0.000022 |
ORF3a | 260 | M260K | aTg | aAg | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF3a | 260 | M260I | atG | atA | 1 | 2 | AY.4.2.1 | 0.000149 |
ORF3a | 260 | M260I | atG | atT | 1 | 2 | AY.4.2.1 | 0.000149 |
ORF3a | 260 | M260del | ATG | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF3a | 260 | M260I | atG | atA | 1 | 2 | AY.42 | 0.00004 |
ORF3a | 260 | M260I | atG | atT | 1 | 2 | AY.42 | 0.00004 |
ORF3a | 260 | M260L | Atg | Ctg | 1 | 2 | AY.43 | 0.000004 |
ORF3a | 260 | M260L | Atg | Ttg | 1 | 2 | AY.43 | 0.000004 |
ORF3a | 260 | M260L | Atg | Ttg | 1 | 2 | AY.44 | 0.000006 |
ORF3a | 260 | M260L | Atg | Ctg | 1 | 2 | AY.44 | 0.000006 |
ORF3a | 260 | M260T | aTg | aCg | 2 | 2 | AY.46 | 0.000208 |
ORF3a | 260 | M260I | atG | atT | 2 | 2 | AY.46.5 | 0.000397 |
ORF3a | 260 | M260T | aTg | aCg | 2 | 2 | AY.5 | 0.000041 |
ORF3a | 260 | M260I | atG | atT | 2 | 2 | AY.5.3 | 0.000675 |
ORF3a | 260 | M260I | atG | atT | 2 | 2 | AY.5.4 | 0.000553 |
ORF3a | 260 | M260I | atG | atA | 2 | 2 | AY.6 | 0.000082 |
ORF3a | 260 | M260V | Atg | Gtg | 2 | 2 | AY.66 | 0.002139 |
ORF3a | 260 | M260del | ATG | --- | 2 | 2 | AY.75.1 | 0.000361 |
ORF3a | 260 | M260I | atG | atT | 2 | 2 | AY.84 | 0.000875 |
ORF3a | 260 | M260I | atG | atA | 2 | 2 | AY.9 | 0.000135 |
ORF3a | 260 | M260T | aTg | aCg | 2 | 2 | AY.9.1 | 0.000167 |
ORF3a | 260 | M260K | aTg | aAg | 2 | 2 | AY.96 | 0.004149 |
ORF3a | 260 | M260V | Atg | Gtg | 2 | 2 | AY.98.1 | 0.000097 |
ORF3a | 260 | M260del | ATG | --- | 2 | 2 | AY.99 | 0.002099 |
ORF3a | 260 | M260T | aTg | aCg | 2 | 2 | B.1 | 0.000018 |
ORF3a | 260 | M260del1 | atG | at- | 2 | 2 | B.1 | 0.000018 |
ORF3a | 260 | M260T | aTg | aCg | 2 | 2 | B.1.1 | 0.000036 |
ORF3a | 260 | M260T | aTg | aCg | 2 | 2 | B.1.1.170 | 0.002494 |
ORF3a | 260 | M260K | aTg | aAg | 2 | 2 | B.1.1.222 | 0.000408 |
ORF3a | 260 | M260L | Atg | Ttg | 2 | 2 | B.1.1.241 | 0.004141 |
ORF3a | 260 | M260del | ATG | --- | 2 | 2 | B.1.1.28 | 0.000622 |
ORF3a | 260 | M260K | aTg | aAg | 2 | 2 | B.1.1.284 | 0.000215 |
ORF3a | 260 | M260I | atG | atT | 2 | 2 | B.1.1.289 | 0.004167 |
ORF3a | 260 | M260I | atG | atT | 2 | 2 | B.1.116 | 0.023256 |
ORF3a | 260 | M260L | Atg | Ctg | 2 | 2 | B.1.139 | 0.001466 |
ORF3a | 260 | M260R | aTg | aGg | 2 | 2 | B.1.177 | 0.000026 |
ORF3a | 260 | M260V | Atg | Gtg | 2 | 2 | B.1.177 | 0.000026 |
ORF3a | 260 | M260del | ATG | --- | 2 | 2 | B.1.177.7 | 0.00033 |
ORF3a | 260 | M260K | aTg | aAg | 2 | 2 | B.1.177.87 | 0.001456 |
ORF3a | 260 | M260I | atG | atT | 2 | 2 | B.1.192 | 0.018519 |
ORF3a | 260 | M260I | atG | atT | 2 | 2 | B.1.221 | 0.000142 |
ORF3a | 260 | M260del | ATG | --- | 2 | 2 | B.1.243 | 0.000139 |
ORF3a | 260 | M260I | atG | atT | 2 | 2 | B.1.243 | 0.000139 |
ORF3a | 260 | M260T | aTg | aCg | 2 | 2 | B.1.258 | 0.000133 |
ORF3a | 260 | M260K | aTg | aAg | 2 | 2 | B.1.351 | 0.000059 |
ORF3a | 260 | M260del | ATG | --- | 2 | 2 | B.1.36.1 | 0.002281 |
ORF3a | 260 | M260I | atG | atT | 2 | 2 | B.1.36.18 | 0.00084 |
ORF3a | 260 | M260del | ATG | --- | 2 | 2 | B.1.36.29 | 0.001035 |
ORF3a | 260 | M260T | aTg | aCg | 2 | 2 | B.1.36.29 | 0.001035 |
ORF3a | 260 | M260K | aTg | aAg | 2 | 2 | B.1.367 | 0.001585 |
ORF3a | 260 | M260I | atG | atT | 2 | 2 | B.1.448 | 0.005249 |
ORF3a | 260 | M260T | aTg | aCg | 2 | 2 | B.1.525 | 0.000226 |
ORF3a | 260 | M260K | aTg | aAg | 2 | 2 | B.1.555 | 0.044444 |
ORF3a | 260 | M260T | aTg | aCg | 2 | 2 | B.1.596 | 0.000174 |
ORF3a | 260 | M260I | atG | atT | 2 | 2 | B.1.619 | 0.001742 |
ORF3a | 260 | M260del | ATG | --- | 2 | 2 | C.26 | 0.014706 |
ORF3a | 260 | M260K | aTg | aAg | 2 | 2 | C.37 | 0.000232 |
ORF3a | 260 | M260K | aTg | aAg | 2 | 2 | D.5 | 0.00995 |
ORF3a | 260 | M260V | Atg | Gtg | 2 | 2 | P.1 | 0.000032 |
ORF3a | 260 | M260I | atG | atT | 2 | 2 | P.1.15 | 0.000465 |
ORF3a | 260 | M260V | Atg | Gtg | 2 | 2 | P.1.7 | 0.000639 |
ORF3a | 260 | M260I | atG | atA | 1 | 2 | P.1.7 | 0.000319 |
ORF3a | 260 | M260I | atG | atT | 1 | 2 | P.1.7 | 0.000319 |
ORF3a | 260 | M260del | ATG | --- | 2 | 2 | Q.1 | 0.000253 |
ORF3a | 260 | M260I | atG | atT | 2 | 2 | Q.1 | 0.000253 |
ORF3a | 260 | M260I | atG | atT | 2 | 2 | Q.2 | 0.001227 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | A | 0.000387 |
ORF3a | 260 | M260I | atG | atA | 1 | 1 | A.2.5 | 0.000499 |
ORF3a | 260 | M260L | Atg | Ttg | 1 | 1 | A.27 | 0.001656 |
ORF3a | 260 | M260I | atG | atA | 1 | 1 | A.3 | 0.002096 |
ORF3a | 260 | M260del2 | ATg | --g | 1 | 1 | All | 0 |
ORF3a | 260 | M260P | ATg | CCg | 1 | 1 | All | 0 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | AU.1 | 0.001266 |
ORF3a | 260 | M260T | aTg | aCg | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 260 | M260I | atG | atA | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 260 | M260V | Atg | Gtg | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 260 | M260T | aTg | aCg | 1 | 1 | AY.104 | 0.001984 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | AY.105 | 0.000643 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | AY.110 | 0.000113 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | AY.114 | 0.000231 |
ORF3a | 260 | M260K | aTG | aAA | 1 | 1 | AY.116 | 0.000287 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 260 | M260V | Atg | Gtg | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 260 | M260T | aTg | aCg | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 260 | M260T | aTg | aCg | 1 | 1 | AY.121 | 0.000135 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | AY.16 | 0.00038 |
ORF3a | 260 | M260del1 | atG | at- | 1 | 1 | AY.16 | 0.00038 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | AY.16 | 0.00038 |
ORF3a | 260 | M260L | Atg | Ttg | 1 | 1 | AY.16.1 | 0.00047 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | AY.16.1 | 0.00047 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | AY.2 | 0.000356 |
ORF3a | 260 | M260T | aTg | aCg | 1 | 1 | AY.2 | 0.000356 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 260 | M260T | aTg | aCg | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 260 | M260L | Atg | Ttg | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 260 | M260T | aTg | aCg | 1 | 1 | AY.23.1 | 0.000417 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | AY.24 | 0.000431 |
ORF3a | 260 | M260V | Atg | Gtg | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | AY.27 | 0.000065 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | AY.27 | 0.000065 |
ORF3a | 260 | M260del2 | ATg | --g | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 260 | M260T | aTg | aCg | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 260 | M260T | aTg | aCg | 1 | 1 | AY.32 | 0.000532 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 260 | M260L | Atg | Ttg | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 260 | M260T | aTg | aCg | 1 | 1 | AY.34 | 0.000097 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | AY.36 | 0.000148 |
ORF3a | 260 | M260T | aTg | aCg | 1 | 1 | AY.38 | 0.000499 |
ORF3a | 260 | M260L | Atg | Ttg | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 260 | M260V | Atg | Gtg | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 260 | M260L | Atg | Ttg | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 260 | M260I | atG | atA | 1 | 1 | AY.4.1 | 0.000737 |
ORF3a | 260 | M260V | Atg | Gtg | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF3a | 260 | M260T | aTg | aCg | 1 | 1 | AY.4.3 | 0.000842 |
ORF3a | 260 | M260V | Atg | Gtg | 1 | 1 | AY.4.4 | 0.000409 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | AY.4.4 | 0.000409 |
ORF3a | 260 | M260T | aTg | aCg | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | AY.41 | 0.000294 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 260 | M260T | aTg | aCg | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 260 | M260P | ATg | CCg | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 260 | M260R | ATg | CGg | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 260 | M260N | aTG | aAT | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | AY.46.1 | 0.001027 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | AY.46.4 | 0.000165 |
ORF3a | 260 | M260V | Atg | Gtg | 1 | 1 | AY.47 | 0.000031 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | AY.49 | 0.003195 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | AY.5 | 0.000021 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | AY.50 | 0.000799 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | AY.53 | 0.000288 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 260 | M260V | Atg | Gtg | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 260 | M260L | Atg | Ctg | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 260 | M260R | aTg | aGg | 1 | 1 | AY.62 | 0.000436 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | AY.62 | 0.000436 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | AY.65 | 0.000533 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 260 | M260I | atG | atA | 1 | 1 | AY.70 | 0.000209 |
ORF3a | 260 | M260T | aTg | aCg | 1 | 1 | AY.72 | 0.001361 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | AY.74 | 0.000116 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | AY.74 | 0.000116 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | AY.75.1 | 0.00018 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | AY.79 | 0.001211 |
ORF3a | 260 | M260L | Atg | Ctg | 1 | 1 | AY.8 | 0.000606 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | AY.85 | 0.000427 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | AY.85 | 0.000427 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | AY.87 | 0.000833 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | AY.88 | 0.000884 |
ORF3a | 260 | M260L | Atg | Ttg | 1 | 1 | AY.9.2 | 0.000037 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | AY.90 | 0.000684 |
ORF3a | 260 | M260T | aTg | aCg | 1 | 1 | AY.92 | 0.000287 |
ORF3a | 260 | M260V | Atg | Gtg | 1 | 1 | AY.95 | 0.000761 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | AY.96 | 0.002075 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | AY.98 | 0.000079 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 260 | M260R | aTg | aGg | 1 | 1 | B.1 | 0.000009 |
ORF3a | 260 | M260L | Atg | Ttg | 1 | 1 | B.1 | 0.000009 |
ORF3a | 260 | M260V | Atg | Gtg | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 260 | M260N | aTG | aAC | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF3a | 260 | M260R | aTg | aGg | 1 | 1 | B.1.1.153 | 0.001095 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | B.1.1.191 | 0.004762 |
ORF3a | 260 | M260T | aTg | aCg | 1 | 1 | B.1.1.214 | 0.000055 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | B.1.1.214 | 0.000055 |
ORF3a | 260 | M260L | Atg | Ttg | 1 | 1 | B.1.1.214 | 0.000055 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | B.1.1.216 | 0.00089 |
ORF3a | 260 | M260L | Atg | Ctg | 1 | 1 | B.1.1.220 | 0.001859 |
ORF3a | 260 | M260V | Atg | Gtg | 1 | 1 | B.1.1.241 | 0.00207 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | B.1.1.285 | 0.006536 |
ORF3a | 260 | M260V | Atg | Gtg | 1 | 1 | B.1.1.306 | 0.000438 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | B.1.1.317 | 0.000412 |
ORF3a | 260 | M260V | Atg | Gtg | 1 | 1 | B.1.1.318 | 0.000302 |
ORF3a | 260 | M260I | atG | atA | 1 | 1 | B.1.1.318 | 0.000302 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF3a | 260 | M260I | atG | atA | 1 | 1 | B.1.1.332 | 0.03125 |
ORF3a | 260 | M260del1 | atG | at- | 1 | 1 | B.1.1.353 | 0.020833 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | B.1.1.372 | 0.000689 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | B.1.1.403 | 0.025641 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | B.1.1.432 | 0.001266 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | B.1.1.44 | 0.00241 |
ORF3a | 260 | M260I | atG | atC | 1 | 1 | B.1.1.47 | 0.005348 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | B.1.1.517 | 0.006803 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | B.1.1.517 | 0.006803 |
ORF3a | 260 | M260V | Atg | Gtg | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 260 | M260L | Atg | Ttg | 1 | 1 | B.1.1.525 | 0.005464 |
ORF3a | 260 | M260R | aTg | aGg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 260 | M260del1 | Atg | -tg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF3a | 260 | M260V | Atg | Gtg | 1 | 1 | B.1.128 | 0.000635 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | B.1.177.24 | 0.001295 |
ORF3a | 260 | M260V | Atg | Gtg | 1 | 1 | B.1.177.32 | 0.00135 |
ORF3a | 260 | M260V | Atg | Gtg | 1 | 1 | B.1.177.5 | 0.001242 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | B.1.177.60 | 0.000218 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | B.1.177.86 | 0.000183 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF3a | 260 | M260del1 | Atg | -tg | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 260 | M260R | aTg | aGg | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | B.1.206 | 0.000816 |
ORF3a | 260 | M260T | aTg | aCg | 1 | 1 | B.1.210 | 0.002132 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | B.1.214 | 0.003663 |
ORF3a | 260 | M260L | Atg | Ttg | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 260 | M260T | aTg | aCg | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | B.1.222 | 0.001692 |
ORF3a | 260 | M260T | aTg | aCg | 1 | 1 | B.1.234 | 0.000132 |
ORF3a | 260 | M260L | Atg | Ctg | 1 | 1 | B.1.236 | 0.002053 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | B.1.237 | 0.004975 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | B.1.265 | 0.001271 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | B.1.298 | 0.002114 |
ORF3a | 260 | M260V | Atg | Gtg | 1 | 1 | B.1.311 | 0.000275 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | B.1.320 | 0.001245 |
ORF3a | 260 | M260T | aTg | aCg | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 260 | M260L | Atg | Ctg | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | B.1.36 | 0.000146 |
ORF3a | 260 | M260L | Atg | Ttg | 1 | 1 | B.1.36.39 | 0.002217 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | B.1.36.7 | 0.004 |
ORF3a | 260 | M260I | atG | atA | 1 | 1 | B.1.378 | 0.006849 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | B.1.380 | 0.006623 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | B.1.398 | 0.002976 |
ORF3a | 260 | M260V | Atg | Gtg | 1 | 1 | B.1.427 | 0.00005 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF3a | 260 | M260I | atG | atA | 1 | 1 | B.1.427 | 0.00005 |
ORF3a | 260 | M260L | Atg | Ttg | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 260 | M260V | Atg | Gtg | 1 | 1 | B.1.438.1 | 0.000107 |
ORF3a | 260 | M260I | atG | atA | 1 | 1 | B.1.438.1 | 0.000107 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | B.1.459 | 0.004082 |
ORF3a | 260 | M260L | Atg | Ttg | 1 | 1 | B.1.470 | 0.001404 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | B.1.470 | 0.001404 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | B.1.497 | 0.000315 |
ORF3a | 260 | M260L | Atg | Ctg | 1 | 1 | B.1.503 | 0.002488 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | B.1.509 | 0.000866 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | B.1.521 | 0.004975 |
ORF3a | 260 | M260T | aTg | aCg | 1 | 1 | B.1.524 | 0.001406 |
ORF3a | 260 | M260V | AtG | GtT | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | B.1.551 | 0.00129 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | B.1.551 | 0.00129 |
ORF3a | 260 | M260V | Atg | Gtg | 1 | 1 | B.1.556 | 0.007519 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | B.1.560 | 0.00463 |
ORF3a | 260 | M260L | Atg | Ttg | 1 | 1 | B.1.565 | 0.00081 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | B.1.595 | 0.000261 |
ORF3a | 260 | M260V | Atg | Gtg | 1 | 1 | B.1.595 | 0.000261 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 260 | M260T | aTg | aCg | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 260 | M260del1 | atG | at- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 260 | M260V | Atg | Gtg | 1 | 1 | B.1.621 | 0.000089 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | B.1.621 | 0.000089 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | B.1.621 | 0.000089 |
ORF3a | 260 | M260del1 | aTG | aC- | 1 | 1 | B.1.621 | 0.000089 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF3a | 260 | M260T | aTg | aCg | 1 | 1 | B.1.627 | 0.00202 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | B.1.628 | 0.000352 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | B.1.637 | 0.000073 |
ORF3a | 260 | M260T | aTg | aCg | 1 | 1 | B.1.637 | 0.000073 |
ORF3a | 260 | M260V | Atg | Gtg | 1 | 1 | B.3 | 0.000831 |
ORF3a | 260 | M260T | aTg | aCg | 1 | 1 | B.4.7 | 0.010101 |
ORF3a | 260 | M260L | Atg | Ctg | 1 | 1 | B.40 | 0.000364 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | B.55 | 0.00295 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | C.14 | 0.004329 |
ORF3a | 260 | M260R | aTg | aGg | 1 | 1 | C.18 | 0.002591 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | C.23 | 0.005814 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | C.30 | 0.001727 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | D.2 | 0.000075 |
ORF3a | 260 | M260T | aTg | aCg | 1 | 1 | D.2 | 0.000075 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | L.3 | 0.003546 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | N.5 | 0.001767 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 260 | M260R | aTg | aGg | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 260 | M260I | atG | atA | 1 | 1 | P.1.17 | 0.000162 |
ORF3a | 260 | M260I | atG | atA | 1 | 1 | P.2 | 0.000187 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | P.2 | 0.000187 |
ORF3a | 260 | M260del | ATG | --- | 1 | 1 | P.6 | 0.003145 |
ORF3a | 260 | M260N | aTG | aAT | 1 | 1 | P.6 | 0.003145 |
ORF3a | 260 | M260K | aTg | aAg | 1 | 1 | Q.1 | 0.000126 |
ORF3a | 260 | M260V | Atg | Gtg | 1 | 1 | Q.1 | 0.000126 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | Q.3 | 0.000145 |
ORF3a | 260 | M260I | atG | atT | 1 | 1 | Q.7 | 0.001111 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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