CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 26 | S26L | nonsyn | tCa | tTa | 2759076 | 2758877 | 0.999928 | 25468-25470 | |
ORF3a | 26 | S26L | nonsyn | TCa | CTa | 2759076 | 149 | 0.0000540036 | 25468-25470 | |
ORF3a | 26 | S26L | nonsyn | tCA | tTG | 2759076 | 50 | 0.000018122 | 25468-25470 | |
ORF3a | 26 | S26del | del | TCA | --- | 1818 | 1818 | 1 | 25468-25470 | |
ORF3a | 26 | S26S | syn | tcA | tcT | 340 | 207 | 0.608824 | 25468-25470 | |
ORF3a | 26 | S26S | syn | tcA | tcG | 340 | 122 | 0.358824 | 25468-25470 | |
ORF3a | 26 | S26S | syn | tcA | tcC | 340 | 11 | 0.0323529 | 25468-25470 | |
ORF3a | 26 | S26A | nonsyn | Tca | Gca | 204 | 204 | 1 | 25468-25470 | |
ORF3a | 26 | S26P | nonsyn | Tca | Cca | 200 | 200 | 1 | 25468-25470 | |
ORF3a | 26 | S26del1 | del | tCa | t-a | 19 | 13 | 0.684211 | 25468-25470 | |
ORF3a | 26 | S26del1 | del | tcA | tc- | 19 | 3 | 0.157895 | 25468-25470 | |
ORF3a | 26 | S26del1 | del | tCA | tT- | 19 | 2 | 0.105263 | 25468-25470 | |
ORF3a | 26 | S26del1 | del | Tca | -ca | 19 | 1 | 0.0526316 | 25468-25470 | |
ORF3a | 26 | S26F | nonsyn | tCA | tTT | 16 | 14 | 0.875 | 25468-25470 | |
ORF3a | 26 | S26F | nonsyn | tCA | tTC | 16 | 2 | 0.125 | 25468-25470 | |
ORF3a | 26 | S26del2 | del | TCa | --a | 7 | 5 | 0.714286 | 25468-25470 | |
ORF3a | 26 | S26del2 | del | tCA | t-- | 7 | 2 | 0.285714 | 25468-25470 | |
ORF3a | 26 | S26V | nonsyn | TCa | GTa | 6 | 6 | 1 | 25468-25470 | |
ORF3a | 26 | S26T | nonsyn | Tca | Aca | 6 | 5 | 0.833333 | 25468-25470 | |
ORF3a | 26 | S26X | nonsyn | tCa | tGa | 6 | 3 | 0.5 | 25468-25470 | |
ORF3a | 26 | S26X | nonsyn | tCa | tAa | 6 | 3 | 0.5 | 25468-25470 | |
ORF3a | 26 | S26T | nonsyn | TcA | AcG | 6 | 1 | 0.166667 | 25468-25470 | |
ORF3a | 26 | S26I | nonsyn | TCa | ATa | 1 | 1 | 1 | 25468-25470 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 26 | S26L | tCa | tTa | 2758877 | 2759076 | All | 0.527668 |
ORF3a | 26 | S26L | TCa | CTa | 149 | 2759076 | All | 0.000028 |
ORF3a | 26 | S26L | tCA | tTG | 50 | 2759076 | All | 0.00001 |
ORF3a | 26 | S26L | tCa | tTa | 641614 | 641646 | AY.4 | 0.998623 |
ORF3a | 26 | S26L | tCA | tTG | 25 | 641646 | AY.4 | 0.000039 |
ORF3a | 26 | S26L | TCa | CTa | 7 | 641646 | AY.4 | 0.000011 |
ORF3a | 26 | S26L | tCa | tTa | 264722 | 264763 | B.1.617.2 | 0.996788 |
ORF3a | 26 | S26L | TCa | CTa | 40 | 264763 | B.1.617.2 | 0.000151 |
ORF3a | 26 | S26L | tCA | tTG | 1 | 264763 | B.1.617.2 | 0.000004 |
ORF3a | 26 | S26L | tCa | tTa | 224852 | 224869 | AY.43 | 0.996199 |
ORF3a | 26 | S26L | tCA | tTG | 10 | 224869 | AY.43 | 0.000044 |
ORF3a | 26 | S26L | TCa | CTa | 7 | 224869 | AY.43 | 0.000031 |
ORF3a | 26 | S26L | tCa | tTa | 165950 | 165950 | AY.25 | 0.998159 |
ORF3a | 26 | S26L | tCa | tTa | 163843 | 163846 | AY.44 | 0.997273 |
ORF3a | 26 | S26L | tCA | tTG | 2 | 163846 | AY.44 | 0.000012 |
ORF3a | 26 | S26L | TCa | CTa | 1 | 163846 | AY.44 | 0.000006 |
ORF3a | 26 | S26L | tCa | tTa | 160771 | 160808 | AY.103 | 0.998237 |
ORF3a | 26 | S26L | TCa | CTa | 33 | 160808 | AY.103 | 0.000205 |
ORF3a | 26 | S26L | tCA | tTG | 4 | 160808 | AY.103 | 0.000025 |
ORF3a | 26 | S26L | tCa | tTa | 100368 | 100369 | AY.3 | 0.998299 |
ORF3a | 26 | S26L | TCa | CTa | 1 | 100369 | AY.3 | 0.00001 |
ORF3a | 26 | S26L | tCa | tTa | 63363 | 63364 | AY.29 | 0.999464 |
ORF3a | 26 | S26L | tCA | tTG | 1 | 63364 | AY.29 | 0.000016 |
ORF3a | 26 | S26L | tCa | tTa | 48194 | 48194 | AY.5 | 0.995168 |
ORF3a | 26 | S26L | tCa | tTa | 46067 | 46067 | AY.4.2 | 0.999132 |
ORF3a | 26 | S26L | tCa | tTa | 40272 | 40275 | AY.39 | 0.995181 |
ORF3a | 26 | S26L | tCA | tTG | 2 | 40275 | AY.39 | 0.000049 |
ORF3a | 26 | S26L | TCa | CTa | 1 | 40275 | AY.39 | 0.000025 |
ORF3a | 26 | S26L | tCa | tTa | 37644 | 37646 | AY.102 | 0.998091 |
ORF3a | 26 | S26L | TCa | CTa | 2 | 37646 | AY.102 | 0.000053 |
ORF3a | 26 | S26L | tCa | tTa | 35243 | 35244 | AY.26 | 0.997735 |
ORF3a | 26 | S26L | TCa | CTa | 1 | 35244 | AY.26 | 0.000028 |
ORF3a | 26 | S26L | tCa | tTa | 32098 | 32098 | AY.47 | 0.998414 |
ORF3a | 26 | S26L | tCa | tTa | 28251 | 28251 | AY.119 | 0.997493 |
ORF3a | 26 | S26L | tCa | tTa | 27138 | 27138 | AY.9.2 | 0.996768 |
ORF3a | 26 | S26L | tCa | tTa | 26859 | 26860 | AY.120 | 0.998587 |
ORF3a | 26 | S26L | TCa | CTa | 1 | 26860 | AY.120 | 0.000037 |
ORF3a | 26 | S26L | tCa | tTa | 25694 | 25694 | AY.20 | 0.998601 |
ORF3a | 26 | S26L | tCa | tTa | 24805 | 24806 | AY.39.1 | 0.98261 |
ORF3a | 26 | S26L | TCa | CTa | 1 | 24806 | AY.39.1 | 0.00004 |
ORF3a | 26 | S26L | tCa | tTa | 24762 | 24762 | AY.42 | 0.996178 |
ORF3a | 26 | S26L | tCa | tTa | 24268 | 24268 | AY.6 | 0.998108 |
ORF3a | 26 | S26L | tCa | tTa | 21707 | 21708 | AY.100 | 0.998666 |
ORF3a | 26 | S26L | tCA | tTG | 1 | 21708 | AY.100 | 0.000046 |
ORF3a | 26 | S26L | tCa | tTa | 20582 | 20582 | AY.98.1 | 0.996804 |
ORF3a | 26 | S26L | tCa | tTa | 17789 | 17790 | AY.75 | 0.996583 |
ORF3a | 26 | S26L | TCa | CTa | 1 | 17790 | AY.75 | 0.000056 |
ORF3a | 26 | S26L | tCa | tTa | 15938 | 15938 | AY.118 | 0.998496 |
ORF3a | 26 | S26L | tCa | tTa | 15449 | 15449 | AY.27 | 0.999871 |
ORF3a | 26 | S26L | tCa | tTa | 14903 | 14903 | AY.33 | 0.995192 |
ORF3a | 26 | S26L | tCa | tTa | 14781 | 14781 | AY.9 | 0.999121 |
ORF3a | 26 | S26L | tCa | tTa | 14178 | 14178 | AY.23 | 0.98891 |
ORF3a | 26 | S26L | tCa | tTa | 13759 | 13760 | AY.46.6 | 0.993501 |
ORF3a | 26 | S26L | tCA | tTG | 1 | 13760 | AY.46.6 | 0.000072 |
ORF3a | 26 | S26L | tCa | tTa | 12614 | 12614 | AY.98 | 0.996445 |
ORF3a | 26 | S26L | tCa | tTa | 11902 | 11902 | AY.9.1 | 0.996484 |
ORF3a | 26 | S26L | tCa | tTa | 11806 | 11806 | AY.117 | 0.997803 |
ORF3a | 26 | S26L | tCa | tTa | 11716 | 11716 | AY.3.1 | 0.998892 |
ORF3a | 26 | S26L | tCa | tTa | 11346 | 11346 | AY.14 | 0.998592 |
ORF3a | 26 | S26L | tCa | tTa | 10826 | 10826 | AY.99.2 | 0.997696 |
ORF3a | 26 | S26L | tCa | tTa | 10474 | 10474 | AY.54 | 0.998665 |
ORF3a | 26 | S26L | tCa | tTa | 10243 | 10243 | AY.34 | 0.993212 |
ORF3a | 26 | S26L | tCa | tTa | 9511 | 9511 | AY.61 | 0.996542 |
ORF3a | 26 | S26L | tCa | tTa | 9492 | 9492 | AY.46 | 0.987927 |
ORF3a | 26 | S26L | tCa | tTa | 9239 | 9239 | AY.4.5 | 0.99312 |
ORF3a | 26 | S26L | tCa | tTa | 8867 | 8867 | AY.110 | 0.999211 |
ORF3a | 26 | S26L | tCa | tTa | 8865 | 8865 | AY.7.1 | 0.999098 |
ORF3a | 26 | S26L | tCa | tTa | 8602 | 8635 | AY.74 | 0.994796 |
ORF3a | 26 | S26L | TCa | CTa | 33 | 8635 | AY.74 | 0.003816 |
ORF3a | 26 | S26L | tCa | tTa | 7986 | 7987 | AY.45 | 0.971769 |
ORF3a | 26 | S26L | TCa | CTa | 1 | 7987 | AY.45 | 0.000122 |
ORF3a | 26 | S26L | tCa | tTa | 7667 | 7669 | B.1.617.1 | 0.98878 |
ORF3a | 26 | S26L | TCa | CTa | 2 | 7669 | B.1.617.1 | 0.000258 |
ORF3a | 26 | S26L | tCa | tTa | 7372 | 7372 | AY.121 | 0.997564 |
ORF3a | 26 | S26L | tCa | tTa | 7004 | 7014 | AY.113 | 0.997295 |
ORF3a | 26 | S26L | TCa | CTa | 10 | 7014 | AY.113 | 0.001424 |
ORF3a | 26 | S26L | tCa | tTa | 6719 | 6719 | AY.36 | 0.99585 |
ORF3a | 26 | S26L | tCa | tTa | 6708 | 6708 | AY.4.2.1 | 0.999404 |
ORF3a | 26 | S26L | tCa | tTa | 6190 | 6190 | AY.13 | 0.996458 |
ORF3a | 26 | S26L | tCa | tTa | 6034 | 6034 | AY.46.4 | 0.992597 |
ORF3a | 26 | S26L | tCa | tTa | 5498 | 5498 | AY.75.1 | 0.991345 |
ORF3a | 26 | S26L | tCa | tTa | 5445 | 5445 | AY.111 | 0.997253 |
ORF3a | 26 | S26L | tCa | tTa | 5355 | 5355 | AY.69 | 0.999627 |
ORF3a | 26 | S26L | tCa | tTa | 5095 | 5095 | AY.7 | 0.998628 |
ORF3a | 26 | S26L | tCa | tTa | 5039 | 5039 | AY.46.5 | 0.999802 |
ORF3a | 26 | S26L | tCa | tTa | 4766 | 4766 | AY.70 | 0.993745 |
ORF3a | 26 | S26L | tCa | tTa | 4535 | 4535 | AY.29.1 | 1 |
ORF3a | 26 | S26L | tCa | tTa | 4320 | 4320 | AY.114 | 0.998382 |
ORF3a | 26 | S26L | tCa | tTa | 4284 | 4284 | AY.35 | 0.998369 |
ORF3a | 26 | S26L | tCa | tTa | 3661 | 3661 | AY.93 | 0.999727 |
ORF3a | 26 | S26L | tCa | tTa | 3629 | 3629 | AY.68 | 0.99343 |
ORF3a | 26 | S26L | tCa | tTa | 3593 | 3593 | AY.5.4 | 0.994189 |
ORF3a | 26 | S26L | tCa | tTa | 3469 | 3469 | AY.53 | 0.997412 |
ORF3a | 26 | S26L | tCa | tTa | 3461 | 3461 | AY.116 | 0.992544 |
ORF3a | 26 | S26L | tCa | tTa | 3446 | 3446 | AY.92 | 0.989945 |
ORF3a | 26 | S26L | tCa | tTa | 3392 | 3392 | AY.41 | 0.997061 |
ORF3a | 26 | S26L | tCa | tTa | 3207 | 3207 | AY.116.1 | 0.998754 |
ORF3a | 26 | S26L | tCa | tTa | 3158 | 3158 | AY.37 | 0.998104 |
ORF3a | 26 | S26L | tCa | tTa | 3156 | 3156 | AY.12 | 0.997472 |
ORF3a | 26 | S26L | tCa | tTa | 3113 | 3113 | AY.120.1 | 0.999358 |
ORF3a | 26 | S26L | tCa | tTa | 2953 | 2954 | AY.5.3 | 0.996289 |
ORF3a | 26 | S26L | TCa | CTa | 1 | 2954 | AY.5.3 | 0.000337 |
ORF3a | 26 | S26L | tCa | tTa | 2861 | 2861 | AY.106 | 0.958138 |
ORF3a | 26 | S26L | tCa | tTa | 2768 | 2768 | AY.2 | 0.985755 |
ORF3a | 26 | S26L | tCa | tTa | 2759 | 2760 | B.1 | 0.025271 |
ORF3a | 26 | S26L | tCA | tTG | 1 | 2760 | B.1 | 0.000009 |
ORF3a | 26 | S26L | tCa | tTa | 2619 | 2619 | AY.16 | 0.994305 |
ORF3a | 26 | S26L | tCa | tTa | 2585 | 2585 | AY.63 | 1 |
ORF3a | 26 | S26L | tCa | tTa | 2521 | 2521 | AY.30 | 0.997626 |
ORF3a | 26 | S26L | tCa | tTa | 2520 | 2520 | AY.1 | 0.99723 |
ORF3a | 26 | S26L | tCa | tTa | 2439 | 2439 | AY.4.4 | 0.997954 |
ORF3a | 26 | S26L | tCa | tTa | 2396 | 2396 | AY.23.1 | 1 |
ORF3a | 26 | S26L | tCa | tTa | 2335 | 2335 | AY.85 | 0.997437 |
ORF3a | 26 | S26L | tCa | tTa | 2295 | 2295 | AY.24 | 0.989224 |
ORF3a | 26 | S26L | tCa | tTa | 2280 | 2280 | AY.62 | 0.993464 |
ORF3a | 26 | S26L | tCa | tTa | 2274 | 2275 | AY.84 | 0.994751 |
ORF3a | 26 | S26L | TCa | CTa | 1 | 2275 | AY.84 | 0.000437 |
ORF3a | 26 | S26L | tCa | tTa | 2201 | 2201 | AY.94 | 0.974325 |
ORF3a | 26 | S26L | tCa | tTa | 2145 | 2145 | AY.48 | 0.997674 |
ORF3a | 26 | S26L | tCa | tTa | 2143 | 2143 | AY.107 | 0.998602 |
ORF3a | 26 | S26L | tCa | tTa | 2142 | 2142 | AY.67 | 0.994429 |
ORF3a | 26 | S26L | tCa | tTa | 2108 | 2108 | AY.16.1 | 0.990602 |
ORF3a | 26 | S26L | tCa | tTa | 2101 | 2101 | AY.71 | 0.9981 |
ORF3a | 26 | S26L | tCa | tTa | 2030 | 2030 | AY.101 | 0.995586 |
ORF3a | 26 | S26L | tCa | tTa | 1999 | 1999 | AY.120.2.1 | 0.996014 |
ORF3a | 26 | S26L | tCa | tTa | 1982 | 1982 | AY.38 | 0.989516 |
ORF3a | 26 | S26L | tCa | tTa | 1926 | 1926 | AY.34.1 | 0.982152 |
ORF3a | 26 | S26L | tCa | tTa | 1885 | 1885 | AY.10 | 0.99894 |
ORF3a | 26 | S26L | tCa | tTa | 1876 | 1878 | AY.59 | 0.993644 |
ORF3a | 26 | S26L | TCa | CTa | 2 | 1878 | AY.59 | 0.001059 |
ORF3a | 26 | S26L | tCa | tTa | 1873 | 1873 | AY.32 | 0.997338 |
ORF3a | 26 | S26L | tCa | tTa | 1869 | 1869 | AY.65 | 0.996269 |
ORF3a | 26 | S26del | TCA | --- | 1818 | 1818 | All | 0.000348 |
ORF3a | 26 | S26L | tCa | tTa | 1788 | 1788 | AY.7.2 | 1 |
ORF3a | 26 | S26L | tCa | tTa | 1678 | 1678 | AY.64 | 0.99881 |
ORF3a | 26 | S26L | tCa | tTa | 1650 | 1650 | AY.8 | 1 |
ORF3a | 26 | S26L | tCa | tTa | 1577 | 1577 | B.1.1.7 | 0.001412 |
ORF3a | 26 | S26L | tCa | tTa | 1552 | 1552 | AY.105 | 0.998071 |
ORF3a | 26 | S26L | tCa | tTa | 1522 | 1524 | AY.57 | 0.998688 |
ORF3a | 26 | S26L | TCa | CTa | 1 | 1524 | AY.57 | 0.000656 |
ORF3a | 26 | S26L | tCA | tTG | 1 | 1524 | AY.57 | 0.000656 |
ORF3a | 26 | S26L | tCa | tTa | 1499 | 1499 | AY.73 | 0.997339 |
ORF3a | 26 | S26L | tCa | tTa | 1460 | 1460 | AY.90 | 0.999316 |
ORF3a | 26 | S26L | tCa | tTa | 1379 | 1379 | AY.39.1.1 | 0.999275 |
ORF3a | 26 | S26L | tCa | tTa | 1353 | 1353 | AY.4.1 | 0.997788 |
ORF3a | 26 | S26L | tCa | tTa | 1333 | 1333 | AY.109 | 0.985947 |
ORF3a | 26 | S26L | tCa | tTa | 1319 | 1319 | AY.91 | 0.963477 |
ORF3a | 26 | S26L | tCa | tTa | 1300 | 1302 | AY.95 | 0.989346 |
ORF3a | 26 | S26L | TCa | CTa | 2 | 1302 | AY.95 | 0.001522 |
ORF3a | 26 | S26del | TCA | --- | 1271 | 1271 | B.1.214.2 | 0.76199 |
ORF3a | 26 | S26L | tCa | tTa | 1245 | 1245 | AY.50 | 0.995204 |
ORF3a | 26 | S26L | tCa | tTa | 1221 | 1221 | AY.52 | 0.9943 |
ORF3a | 26 | S26L | tCa | tTa | 1202 | 1202 | AY.86 | 0.99751 |
ORF3a | 26 | S26L | tCa | tTa | 1197 | 1197 | AY.87 | 0.996669 |
ORF3a | 26 | S26L | tCa | tTa | 1129 | 1129 | AY.46.2 | 0.717281 |
ORF3a | 26 | S26L | tCa | tTa | 1128 | 1128 | AY.88 | 0.997347 |
ORF3a | 26 | S26L | tCa | tTa | 1100 | 1100 | AY.58 | 0.998185 |
ORF3a | 26 | S26L | tCa | tTa | 1099 | 1099 | AY.51 | 0.999091 |
ORF3a | 26 | S26L | tCa | tTa | 1097 | 1097 | AY.4.3 | 0.923401 |
ORF3a | 26 | S26L | tCa | tTa | 1084 | 1084 | AY.55 | 0.994495 |
ORF3a | 26 | S26L | tCa | tTa | 1070 | 1070 | AY.46.3 | 0.999066 |
ORF3a | 26 | S26L | tCa | tTa | 1057 | 1057 | AY.60 | 0.991557 |
ORF3a | 26 | S26L | tCa | tTa | 1027 | 1027 | AY.40 | 0.990357 |
ORF3a | 26 | S26L | tCa | tTa | 971 | 971 | AY.46.1 | 0.99692 |
ORF3a | 26 | S26L | tCa | tTa | 938 | 938 | AY.99 | 0.98426 |
ORF3a | 26 | S26L | tCa | tTa | 929 | 929 | AY.66 | 0.993583 |
ORF3a | 26 | S26L | tCa | tTa | 901 | 901 | AY.108 | 0.993385 |
ORF3a | 26 | S26L | tCa | tTa | 884 | 884 | AY.77 | 0.996618 |
ORF3a | 26 | S26L | tCa | tTa | 884 | 884 | AY.80 | 0.997743 |
ORF3a | 26 | S26L | tCa | tTa | 870 | 870 | AY.19 | 0.992018 |
ORF3a | 26 | S26L | tCa | tTa | 820 | 820 | AY.79 | 0.992736 |
ORF3a | 26 | S26L | tCa | tTa | 757 | 757 | AY.120.2 | 0.973008 |
ORF3a | 26 | S26L | tCa | tTa | 745 | 745 | AY.11 | 0.997323 |
ORF3a | 26 | S26L | tCa | tTa | 733 | 733 | AY.82 | 0.994573 |
ORF3a | 26 | S26L | tCa | tTa | 732 | 732 | AY.72 | 0.995918 |
ORF3a | 26 | S26L | tCa | tTa | 649 | 649 | AY.39.2 | 1 |
ORF3a | 26 | S26L | tCa | tTa | 643 | 643 | AY.78 | 0.990755 |
ORF3a | 26 | S26L | tCa | tTa | 640 | 640 | AY.99.1 | 0.993789 |
ORF3a | 26 | S26L | tCa | tTa | 620 | 620 | AY.56 | 0.995185 |
ORF3a | 26 | S26L | tCa | tTa | 586 | 586 | AY.97 | 0.996599 |
ORF3a | 26 | S26L | tCa | tTa | 580 | 580 | AY.83 | 1 |
ORF3a | 26 | S26L | tCa | tTa | 527 | 527 | AY.28 | 0.996219 |
ORF3a | 26 | S26L | tCa | tTa | 506 | 506 | AY.9.2.1 | 1 |
ORF3a | 26 | S26L | tCa | tTa | 505 | 505 | AY.21 | 0.958254 |
ORF3a | 26 | S26L | tCa | tTa | 498 | 498 | AY.81 | 0.992032 |
ORF3a | 26 | S26L | tCa | tTa | 490 | 490 | AY.104 | 0.972222 |
ORF3a | 26 | S26L | tCa | tTa | 464 | 464 | AY.22 | 0.970711 |
ORF3a | 26 | S26L | tCa | tTa | 463 | 463 | AY.96 | 0.960581 |
ORF3a | 26 | S26L | tCa | tTa | 450 | 450 | AY.15 | 1 |
ORF3a | 26 | S26L | tCa | tTa | 421 | 421 | B | 0.053809 |
ORF3a | 26 | S26L | tCa | tTa | 394 | 394 | AY.5.2 | 0.970443 |
ORF3a | 26 | S26S | tcA | tcT | 207 | 340 | All | 0.00004 |
ORF3a | 26 | S26S | tcA | tcG | 122 | 340 | All | 0.000023 |
ORF3a | 26 | S26S | tcA | tcC | 11 | 340 | All | 0.000002 |
ORF3a | 26 | S26L | tCa | tTa | 286 | 286 | AY.49 | 0.913738 |
ORF3a | 26 | S26L | tCa | tTa | 252 | 252 | AY.5.1 | 0.947368 |
ORF3a | 26 | S26L | tCa | tTa | 243 | 243 | AY.91.1 | 0.987805 |
ORF3a | 26 | S26L | tCa | tTa | 207 | 207 | AY.76 | 1 |
ORF3a | 26 | S26A | Tca | Gca | 204 | 204 | All | 0.000039 |
ORF3a | 26 | S26L | tCa | tTa | 202 | 202 | P.1 | 0.003182 |
ORF3a | 26 | S26L | tCa | tTa | 201 | 201 | AY.89 | 0.985294 |
ORF3a | 26 | S26P | Tca | Cca | 200 | 200 | All | 0.000038 |
ORF3a | 26 | S26L | tCa | tTa | 192 | 192 | AY.115 | 1 |
ORF3a | 26 | S26L | tCa | tTa | 125 | 125 | B.1.1 | 0.002268 |
ORF3a | 26 | S26L | tCa | tTa | 122 | 122 | AY.17 | 1 |
ORF3a | 26 | S26A | Tca | Gca | 119 | 119 | B.1.344 | 0.97541 |
ORF3a | 26 | S26S | tcA | tcT | 106 | 107 | B.1.526 | 0.002491 |
ORF3a | 26 | S26S | tcA | tcC | 1 | 107 | B.1.526 | 0.000024 |
ORF3a | 26 | S26del | TCA | --- | 104 | 104 | B.1.617.3 | 0.310448 |
ORF3a | 26 | S26L | tCa | tTa | 101 | 101 | B.1.429 | 0.002376 |
ORF3a | 26 | S26L | tCa | tTa | 99 | 99 | AY.18 | 1 |
ORF3a | 26 | S26L | tCa | tTa | 99 | 99 | B.1.2 | 0.000872 |
ORF3a | 26 | S26L | tCa | tTa | 99 | 99 | B.1.351 | 0.002943 |
ORF3a | 26 | S26L | tCa | tTa | 79 | 79 | B.1.596 | 0.006884 |
ORF3a | 26 | S26L | tCa | tTa | 75 | 75 | B.1.177.73 | 0.042469 |
ORF3a | 26 | S26P | Tca | Cca | 69 | 69 | B.1.1.7 | 0.000062 |
ORF3a | 26 | S26L | tCa | tTa | 60 | 60 | B.1.526 | 0.00141 |
ORF3a | 26 | S26L | tCa | tTa | 59 | 59 | B.1.177 | 0.000777 |
ORF3a | 26 | S26del | TCA | --- | 58 | 58 | AY.4 | 0.00009 |
ORF3a | 26 | S26A | Tca | Gca | 58 | 58 | B.1.1.7 | 0.000052 |
ORF3a | 26 | S26P | Tca | Cca | 57 | 57 | B.1 | 0.000522 |
ORF3a | 26 | S26L | tCa | tTa | 55 | 55 | P.1.14 | 0.002629 |
ORF3a | 26 | S26L | tCa | tTa | 54 | 54 | AY.31 | 1 |
ORF3a | 26 | S26S | tcA | tcT | 33 | 52 | B.1.1.7 | 0.00003 |
ORF3a | 26 | S26S | tcA | tcG | 17 | 52 | B.1.1.7 | 0.000015 |
ORF3a | 26 | S26S | tcA | tcC | 2 | 52 | B.1.1.7 | 0.000002 |
ORF3a | 26 | S26del | TCA | --- | 45 | 45 | B.1.1.7 | 0.00004 |
ORF3a | 26 | S26del | TCA | --- | 44 | 44 | AY.25 | 0.000265 |
ORF3a | 26 | S26L | tCa | tTa | 38 | 38 | B.1.1.284 | 0.004081 |
ORF3a | 26 | S26L | tCa | tTa | 35 | 35 | B.1.1.420 | 0.035211 |
ORF3a | 26 | S26L | tCa | tTa | 34 | 34 | B.1.214 | 0.124542 |
ORF3a | 26 | S26L | tCa | tTa | 34 | 34 | B.1.576 | 0.030825 |
ORF3a | 26 | S26S | tcA | tcG | 31 | 33 | B.1.2 | 0.000273 |
ORF3a | 26 | S26S | tcA | tcT | 2 | 33 | B.1.2 | 0.000018 |
ORF3a | 26 | S26L | tCa | tTa | 31 | 31 | B.1.160.14 | 0.065678 |
ORF3a | 26 | S26S | tcA | tcT | 24 | 30 | B.1.429 | 0.000565 |
ORF3a | 26 | S26S | tcA | tcG | 6 | 30 | B.1.429 | 0.000141 |
ORF3a | 26 | S26L | tCa | tTa | 28 | 28 | B.1.1.153 | 0.030668 |
ORF3a | 26 | S26del | TCA | --- | 27 | 27 | AY.119 | 0.000953 |
ORF3a | 26 | S26L | tCa | tTa | 26 | 26 | B.1.1.374 | 0.061758 |
ORF3a | 26 | S26L | tCa | tTa | 26 | 26 | B.1.575 | 0.007888 |
ORF3a | 26 | S26L | tCa | tTa | 26 | 26 | Q.8 | 0.004288 |
ORF3a | 26 | S26L | tCa | tTa | 24 | 24 | B.1.221 | 0.001705 |
ORF3a | 26 | S26del | TCA | --- | 23 | 23 | AY.49 | 0.073482 |
ORF3a | 26 | S26del | TCA | --- | 23 | 23 | B.1.1 | 0.000417 |
ORF3a | 26 | S26L | tCa | tTa | 22 | 22 | B.1.617.3 | 0.065672 |
ORF3a | 26 | S26P | Tca | Cca | 21 | 21 | B.1.243 | 0.001461 |
ORF3a | 26 | S26L | tCa | tTa | 21 | 21 | P.1.7 | 0.006705 |
ORF3a | 26 | S26del | TCA | --- | 20 | 20 | AY.43 | 0.000089 |
ORF3a | 26 | S26del | TCA | --- | 20 | 20 | B.1 | 0.000183 |
ORF3a | 26 | S26S | tcA | tcG | 18 | 20 | B.1 | 0.000165 |
ORF3a | 26 | S26S | tcA | tcT | 2 | 20 | B.1 | 0.000018 |
ORF3a | 26 | S26del1 | tCa | t-a | 13 | 19 | All | 0.000002 |
ORF3a | 26 | S26del1 | tcA | tc- | 3 | 19 | All | 0.000001 |
ORF3a | 26 | S26del1 | tCA | tT- | 2 | 19 | All | 0 |
ORF3a | 26 | S26del1 | Tca | -ca | 1 | 19 | All | 0 |
ORF3a | 26 | S26L | tCa | tTa | 19 | 19 | P.1.17 | 0.003073 |
ORF3a | 26 | S26L | tCa | tTa | 18 | 18 | B.1.621 | 0.001593 |
ORF3a | 26 | S26L | tCa | tTa | 17 | 17 | B.1.243 | 0.001183 |
ORF3a | 26 | S26L | tCa | tTa | 17 | 17 | C.37 | 0.001973 |
ORF3a | 26 | S26F | tCA | tTT | 14 | 16 | All | 0.000003 |
ORF3a | 26 | S26F | tCA | tTC | 2 | 16 | All | 0 |
ORF3a | 26 | S26L | tCa | tTa | 16 | 16 | B.1.1.63 | 0.006173 |
ORF3a | 26 | S26L | tCa | tTa | 16 | 16 | B.1.623 | 0.008584 |
ORF3a | 26 | S26del | TCA | --- | 15 | 15 | AY.29 | 0.000237 |
ORF3a | 26 | S26L | tCa | tTa | 15 | 15 | B.1.1.348 | 0.011943 |
ORF3a | 26 | S26L | tCa | tTa | 15 | 15 | B.1.1.526 | 0.053191 |
ORF3a | 26 | S26L | tCa | tTa | 14 | 14 | A | 0.005418 |
ORF3a | 26 | S26L | tCa | tTa | 13 | 13 | B.1.1.519 | 0.000516 |
ORF3a | 26 | S26L | tCa | tTa | 13 | 13 | B.1.157 | 0.038806 |
ORF3a | 26 | S26L | tCa | tTa | 13 | 13 | B.1.177.86 | 0.002385 |
ORF3a | 26 | S26L | tCa | tTa | 12 | 12 | B.1.351.5 | 0.007194 |
ORF3a | 26 | S26L | tCa | tTa | 12 | 12 | P.1.15 | 0.002788 |
ORF3a | 26 | S26S | tcA | tcT | 9 | 11 | B.1.177 | 0.000119 |
ORF3a | 26 | S26S | tcA | tcC | 1 | 11 | B.1.177 | 0.000013 |
ORF3a | 26 | S26S | tcA | tcG | 1 | 11 | B.1.177 | 0.000013 |
ORF3a | 26 | S26S | tcA | tcT | 11 | 11 | P.1.14 | 0.000526 |
ORF3a | 26 | S26del | TCA | --- | 10 | 10 | AY.103 | 0.000062 |
ORF3a | 26 | S26P | Tca | Cca | 10 | 10 | B.1.2 | 0.000088 |
ORF3a | 26 | S26L | tCa | tTa | 10 | 10 | B.1.335 | 0.103093 |
ORF3a | 26 | S26L | tCa | tTa | 10 | 10 | B.1.462 | 0.072464 |
ORF3a | 26 | S26L | tCa | tTa | 10 | 10 | P.1.10 | 0.002695 |
ORF3a | 26 | S26del | TCA | --- | 9 | 9 | AY.44 | 0.000055 |
ORF3a | 26 | S26L | tCa | tTa | 9 | 9 | B.1.1.317 | 0.003705 |
ORF3a | 26 | S26L | tCa | tTa | 9 | 9 | B.1.160 | 0.000281 |
ORF3a | 26 | S26del | TCA | --- | 9 | 9 | B.1.210 | 0.01919 |
ORF3a | 26 | S26L | tCa | tTa | 9 | 9 | B.1.232 | 0.004836 |
ORF3a | 26 | S26L | tCa | tTa | 9 | 9 | B.1.525 | 0.001018 |
ORF3a | 26 | S26del | TCA | --- | 9 | 9 | B.1.639 | 0.195652 |
ORF3a | 26 | S26S | tcA | tcT | 6 | 9 | P.1 | 0.000095 |
ORF3a | 26 | S26S | tcA | tcG | 3 | 9 | P.1 | 0.000047 |
ORF3a | 26 | S26S | tcA | tcG | 4 | 8 | B.1.1 | 0.000073 |
ORF3a | 26 | S26S | tcA | tcT | 4 | 8 | B.1.1 | 0.000073 |
ORF3a | 26 | S26P | Tca | Cca | 8 | 8 | B.1.177 | 0.000105 |
ORF3a | 26 | S26L | tCa | tTa | 8 | 8 | B.1.258 | 0.000532 |
ORF3a | 26 | S26L | tCa | tTa | 8 | 8 | P.1.12 | 0.003872 |
ORF3a | 26 | S26del2 | TCa | --a | 5 | 7 | All | 0.000001 |
ORF3a | 26 | S26del2 | tCA | t-- | 2 | 7 | All | 0 |
ORF3a | 26 | S26del | TCA | --- | 7 | 7 | AY.46.2 | 0.004447 |
ORF3a | 26 | S26A | Tca | Gca | 7 | 7 | B.1.1 | 0.000127 |
ORF3a | 26 | S26L | tCa | tTa | 7 | 7 | B.1.1.318 | 0.002112 |
ORF3a | 26 | S26L | tCa | tTa | 7 | 7 | B.1.1.434 | 0.00244 |
ORF3a | 26 | S26del | TCA | --- | 7 | 7 | B.1.177 | 0.000092 |
ORF3a | 26 | S26L | tCa | tTa | 7 | 7 | B.1.177.32 | 0.009447 |
ORF3a | 26 | S26del | TCA | --- | 7 | 7 | B.1.214.1 | 0.14 |
ORF3a | 26 | S26L | tCa | tTa | 7 | 7 | B.1.36 | 0.001021 |
ORF3a | 26 | S26L | tCa | tTa | 7 | 7 | B.1.369 | 0.001997 |
ORF3a | 26 | S26L | tCa | tTa | 7 | 7 | B.1.637 | 0.000512 |
ORF3a | 26 | S26S | tcA | tcG | 7 | 7 | B.1.637 | 0.000512 |
ORF3a | 26 | S26P | Tca | Cca | 7 | 7 | P.1.13 | 0.006289 |
ORF3a | 26 | S26L | tCa | tTa | 7 | 7 | P.2 | 0.001306 |
ORF3a | 26 | S26V | TCa | GTa | 6 | 6 | All | 0.000001 |
ORF3a | 26 | S26T | Tca | Aca | 5 | 6 | All | 0.000001 |
ORF3a | 26 | S26X | tCa | tAa | 3 | 6 | All | 0.000001 |
ORF3a | 26 | S26X | tCa | tGa | 3 | 6 | All | 0.000001 |
ORF3a | 26 | S26T | TcA | AcG | 1 | 6 | All | 0 |
ORF3a | 26 | S26del | TCA | --- | 6 | 6 | AY.26 | 0.00017 |
ORF3a | 26 | S26F | tCA | tTT | 6 | 6 | AY.4 | 0.000009 |
ORF3a | 26 | S26A | Tca | Gca | 6 | 6 | B.1 | 0.000055 |
ORF3a | 26 | S26L | tCa | tTa | 6 | 6 | B.1.1.523 | 0.009375 |
ORF3a | 26 | S26L | tCa | tTa | 6 | 6 | B.1.604 | 0.103448 |
ORF3a | 26 | S26del | TCA | --- | 6 | 6 | B.1.617.2 | 0.000023 |
ORF3a | 26 | S26L | tCa | tTa | 6 | 6 | B.1.619 | 0.005226 |
ORF3a | 26 | S26L | tCa | tTa | 6 | 6 | B.1.628 | 0.002114 |
ORF3a | 26 | S26S | tcA | tcG | 6 | 6 | C.16 | 0.006363 |
ORF3a | 26 | S26L | tCa | tTa | 6 | 6 | D.2 | 0.00045 |
ORF3a | 26 | S26del | TCA | --- | 5 | 5 | AY.23 | 0.000349 |
ORF3a | 26 | S26L | tCa | tTa | 5 | 5 | B.1.1.214 | 0.000277 |
ORF3a | 26 | S26L | tCa | tTa | 5 | 5 | B.1.1.219 | 0.025 |
ORF3a | 26 | S26L | tCa | tTa | 5 | 5 | B.1.1.294 | 0.006329 |
ORF3a | 26 | S26S | tcA | tcG | 5 | 5 | B.1.160.14 | 0.010593 |
ORF3a | 26 | S26A | Tca | Gca | 5 | 5 | B.1.177 | 0.000066 |
ORF3a | 26 | S26L | tCa | tTa | 5 | 5 | B.1.177.21 | 0.000382 |
ORF3a | 26 | S26L | tCa | tTa | 5 | 5 | B.1.177.83 | 0.007407 |
ORF3a | 26 | S26del | TCA | --- | 5 | 5 | B.1.214.3 | 0.035714 |
ORF3a | 26 | S26L | tCa | tTa | 5 | 5 | B.1.375 | 0.004098 |
ORF3a | 26 | S26S | tcA | tcC | 5 | 5 | B.1.416 | 0.006345 |
ORF3a | 26 | S26L | tCa | tTa | 5 | 5 | B.1.439 | 0.029586 |
ORF3a | 26 | S26L | tCa | tTa | 5 | 5 | B.1.554 | 0.022026 |
ORF3a | 26 | S26L | tCa | tTa | 5 | 5 | B.1.609 | 0.002397 |
ORF3a | 26 | S26P | Tca | Cca | 5 | 5 | B.1.621 | 0.000443 |
ORF3a | 26 | S26P | Tca | Cca | 5 | 5 | P.1 | 0.000079 |
ORF3a | 26 | S26L | tCa | tTa | 4 | 4 | 0.222222 | |
ORF3a | 26 | S26del | TCA | --- | 4 | 4 | AY.3 | 0.00004 |
ORF3a | 26 | S26del | TCA | --- | 4 | 4 | AY.4.5 | 0.00043 |
ORF3a | 26 | S26L | tCa | tTa | 4 | 4 | B.1.1.216 | 0.003562 |
ORF3a | 26 | S26L | tCa | tTa | 4 | 4 | B.1.1.53 | 0.054795 |
ORF3a | 26 | S26L | tCa | tTa | 4 | 4 | B.1.1.75 | 0.042553 |
ORF3a | 26 | S26del | TCA | --- | 4 | 4 | B.1.214 | 0.014652 |
ORF3a | 26 | S26del | TCA | --- | 4 | 4 | B.1.218 | 0.020619 |
ORF3a | 26 | S26L | tCa | tTa | 4 | 4 | B.1.240 | 0.000862 |
ORF3a | 26 | S26L | tCa | tTa | 4 | 4 | B.1.351.3 | 0.003506 |
ORF3a | 26 | S26L | tCa | tTa | 4 | 4 | B.1.36.8 | 0.004 |
ORF3a | 26 | S26L | tCa | tTa | 4 | 4 | B.1.427 | 0.000202 |
ORF3a | 26 | S26L | tCa | tTa | 4 | 4 | B.1.466.2 | 0.001565 |
ORF3a | 26 | S26L | tCa | tTa | 4 | 4 | B.1.582 | 0.001963 |
ORF3a | 26 | S26L | tCa | tTa | 4 | 4 | B.1.629 | 0.053333 |
ORF3a | 26 | S26L | tCa | tTa | 4 | 4 | C.37.1 | 0.010471 |
ORF3a | 26 | S26L | tCa | tTa | 4 | 4 | P.1.1 | 0.001271 |
ORF3a | 26 | S26L | tCa | tTa | 4 | 4 | P.1.13 | 0.003594 |
ORF3a | 26 | S26L | tCa | tTa | 4 | 4 | P.1.2 | 0.004624 |
ORF3a | 26 | S26L | tCa | tTa | 4 | 4 | R.1 | 0.00036 |
ORF3a | 26 | S26del | TCA | --- | 3 | 3 | AY.102 | 0.00008 |
ORF3a | 26 | S26del | TCA | --- | 3 | 3 | AY.33 | 0.0002 |
ORF3a | 26 | S26del | TCA | --- | 3 | 3 | AY.47 | 0.000093 |
ORF3a | 26 | S26del | TCA | --- | 3 | 3 | AY.5 | 0.000062 |
ORF3a | 26 | S26L | tCa | tTa | 3 | 3 | B.1.1.222 | 0.000612 |
ORF3a | 26 | S26L | tCa | tTa | 3 | 3 | B.1.1.285 | 0.019608 |
ORF3a | 26 | S26L | tCa | tTa | 3 | 3 | B.1.1.306 | 0.001315 |
ORF3a | 26 | S26A | Tca | Gca | 3 | 3 | B.1.177.32 | 0.004049 |
ORF3a | 26 | S26L | tCa | tTa | 3 | 3 | B.1.177.35 | 0.002073 |
ORF3a | 26 | S26A | Tca | Gca | 3 | 3 | B.1.258 | 0.0002 |
ORF3a | 26 | S26L | tCa | tTa | 3 | 3 | B.1.258.17 | 0.000312 |
ORF3a | 26 | S26V | TCa | GTa | 3 | 3 | B.1.344 | 0.02459 |
ORF3a | 26 | S26L | tCa | tTa | 3 | 3 | B.1.36.18 | 0.001261 |
ORF3a | 26 | S26L | tCa | tTa | 3 | 3 | B.1.36.31 | 0.005254 |
ORF3a | 26 | S26L | tCa | tTa | 3 | 3 | B.1.474 | 0.005703 |
ORF3a | 26 | S26L | tCa | tTa | 3 | 3 | B.1.530 | 0.021429 |
ORF3a | 26 | S26L | tCa | tTa | 3 | 3 | B.1.564 | 0.001278 |
ORF3a | 26 | S26L | tCa | tTa | 3 | 3 | B.1.577 | 0.002062 |
ORF3a | 26 | S26L | tCa | tTa | 3 | 3 | B.1.600 | 0.017544 |
ORF3a | 26 | S26del | TCA | --- | 3 | 3 | B.1.609 | 0.001438 |
ORF3a | 26 | S26L | tCa | tTa | 3 | 3 | B.55 | 0.00885 |
ORF3a | 26 | S26L | tCa | tTa | 3 | 3 | C.36.3.1 | 0.008152 |
ORF3a | 26 | S26del | TCA | --- | 3 | 3 | Q.1 | 0.000379 |
ORF3a | 26 | S26del | TCA | --- | 3 | 3 | U.3 | 0.011583 |
ORF3a | 26 | S26P | Tca | Cca | 2 | 2 | A | 0.000774 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | A.2.5 | 0.000998 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | AD.2 | 0.000438 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | AU.3 | 0.004219 |
ORF3a | 26 | S26V | TCa | GTa | 2 | 2 | AY.4 | 0.000003 |
ORF3a | 26 | S26del | TCA | --- | 2 | 2 | AY.54 | 0.000191 |
ORF3a | 26 | S26del | TCA | --- | 2 | 2 | AY.7 | 0.000392 |
ORF3a | 26 | S26del | TCA | --- | 2 | 2 | AY.79 | 0.002421 |
ORF3a | 26 | S26del | TCA | --- | 2 | 2 | AY.81 | 0.003984 |
ORF3a | 26 | S26del | TCA | --- | 2 | 2 | AY.9.2 | 0.000073 |
ORF3a | 26 | S26F | tCA | tTT | 2 | 2 | AY.99 | 0.002099 |
ORF3a | 26 | S26del | TCA | --- | 2 | 2 | AY.99.2 | 0.000184 |
ORF3a | 26 | S26del1 | tcA | tc- | 1 | 2 | B.1 | 0.000009 |
ORF3a | 26 | S26del1 | tCa | t-a | 1 | 2 | B.1 | 0.000009 |
ORF3a | 26 | S26P | Tca | Cca | 2 | 2 | B.1.1 | 0.000036 |
ORF3a | 26 | S26T | Tca | Aca | 1 | 2 | B.1.1 | 0.000018 |
ORF3a | 26 | S26T | TcA | AcG | 1 | 2 | B.1.1 | 0.000018 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | B.1.1.121 | 0.004854 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | B.1.1.159 | 0.009346 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | B.1.1.198 | 0.002937 |
ORF3a | 26 | S26T | Tca | Aca | 2 | 2 | B.1.1.25 | 0.001137 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | B.1.1.28 | 0.000622 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | B.1.1.298 | 0.001724 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | B.1.1.33 | 0.000842 |
ORF3a | 26 | S26S | tcA | tcG | 2 | 2 | B.1.1.33 | 0.000842 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | B.1.1.39 | 0.001019 |
ORF3a | 26 | S26S | tcA | tcG | 2 | 2 | B.1.1.398 | 0.006452 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | B.1.1.424 | 0.090909 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | B.1.1.432 | 0.002532 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | B.1.1.462 | 0.017241 |
ORF3a | 26 | S26S | tcA | tcC | 1 | 2 | B.1.1.519 | 0.00004 |
ORF3a | 26 | S26S | tcA | tcG | 1 | 2 | B.1.1.519 | 0.00004 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | B.1.1.70 | 0.000682 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | B.1.126 | 0.002551 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | B.1.143 | 0.042553 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | B.1.169 | 0.029851 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | B.1.177.19 | 0.002861 |
ORF3a | 26 | S26S | tcA | tcT | 2 | 2 | B.1.177.4 | 0.000422 |
ORF3a | 26 | S26P | Tca | Cca | 2 | 2 | B.1.177.4 | 0.000422 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | B.1.177.82 | 0.000955 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | B.1.195 | 0.01005 |
ORF3a | 26 | S26S | tcA | tcG | 1 | 2 | B.1.221 | 0.000071 |
ORF3a | 26 | S26S | tcA | tcT | 1 | 2 | B.1.221 | 0.000071 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | B.1.234 | 0.000264 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | B.1.241 | 0.001623 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | B.1.247 | 0.029851 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | B.1.258.12 | 0.015748 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | B.1.260 | 0.006689 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | B.1.362 | 0.003082 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | B.1.397 | 0.009709 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | B.1.403 | 0.006536 |
ORF3a | 26 | S26S | tcA | tcT | 1 | 2 | B.1.427 | 0.00005 |
ORF3a | 26 | S26S | tcA | tcG | 1 | 2 | B.1.427 | 0.00005 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | B.1.433 | 0.00639 |
ORF3a | 26 | S26S | tcA | tcG | 2 | 2 | B.1.466.2 | 0.000782 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | B.1.485 | 0.029851 |
ORF3a | 26 | S26P | Tca | Cca | 2 | 2 | B.1.526 | 0.000047 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | B.1.551 | 0.002581 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | B.1.564.1 | 0.003155 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | B.1.595 | 0.000522 |
ORF3a | 26 | S26del1 | tCa | t-a | 2 | 2 | B.1.617.2 | 0.000008 |
ORF3a | 26 | S26F | tCA | tTT | 2 | 2 | B.1.617.2 | 0.000008 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | B.1.620 | 0.001892 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | B.1.81 | 0.042553 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | B.4.5 | 0.02381 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | N.10 | 0.058824 |
ORF3a | 26 | S26L | tCa | tTa | 2 | 2 | Q.1 | 0.000253 |
ORF3a | 26 | S26S | tcA | tcT | 2 | 2 | Q.3 | 0.00029 |
ORF3a | 26 | S26X | tCa | tGa | 1 | 1 | 0.055556 | |
ORF3a | 26 | S26S | tcA | tcG | 1 | 1 | A | 0.000387 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | A.1 | 0.000282 |
ORF3a | 26 | S26P | Tca | Cca | 1 | 1 | A.2 | 0.000662 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | A.2 | 0.000662 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | A.2.5.2 | 0.001572 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | A.23.1 | 0.000704 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | A.27 | 0.001656 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | A.5 | 0.001923 |
ORF3a | 26 | S26S | tcA | tcT | 1 | 1 | A.5 | 0.001923 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | AD.1 | 0.004115 |
ORF3a | 26 | S26I | TCa | ATa | 1 | 1 | All | 0 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | AU.1 | 0.001266 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | AU.2 | 0.002421 |
ORF3a | 26 | S26del1 | tCa | t-a | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 26 | S26del2 | TCa | --a | 1 | 1 | AY.103 | 0.000006 |
ORF3a | 26 | S26del1 | tCa | t-a | 1 | 1 | AY.103 | 0.000006 |
ORF3a | 26 | S26I | TCa | ATa | 1 | 1 | AY.103 | 0.000006 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 26 | S26F | tCA | tTT | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | AY.19 | 0.00114 |
ORF3a | 26 | S26del1 | tCa | t-a | 1 | 1 | AY.2 | 0.000356 |
ORF3a | 26 | S26del1 | tCa | t-a | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 26 | S26del2 | tCA | t-- | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 26 | S26P | Tca | Cca | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 26 | S26F | tCA | tTC | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 26 | S26F | tCA | tTT | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 26 | S26del1 | tCA | tT- | 1 | 1 | AY.34 | 0.000097 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 26 | S26del1 | tcA | tc- | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 26 | S26F | tCA | tTT | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 26 | S26del2 | TCa | --a | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 26 | S26F | tCA | tTT | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 26 | S26del1 | tCa | t-a | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 26 | S26X | tCa | tAa | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 26 | S26del2 | tCA | t-- | 1 | 1 | AY.49 | 0.003195 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 26 | S26del1 | tCa | t-a | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 26 | S26del1 | tCA | tT- | 1 | 1 | AY.79 | 0.001211 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | AY.82 | 0.001357 |
ORF3a | 26 | S26F | tCA | tTC | 1 | 1 | AY.92 | 0.000287 |
ORF3a | 26 | S26del2 | TCa | --a | 1 | 1 | AY.99 | 0.001049 |
ORF3a | 26 | S26X | tCa | tGa | 1 | 1 | B.1 | 0.000009 |
ORF3a | 26 | S26del1 | tCa | t-a | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 26 | S26X | tCa | tGa | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.1.10 | 0.001115 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.1.111 | 0.014706 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.1.117 | 0.009709 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.1.132 | 0.014925 |
ORF3a | 26 | S26L | tCA | tTG | 1 | 1 | B.1.1.139 | 0.022727 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.1.142 | 0.017544 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.1.157 | 0.000913 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.1.176 | 0.000439 |
ORF3a | 26 | S26S | tcA | tcT | 1 | 1 | B.1.1.189 | 0.001513 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.1.210 | 0.005714 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | B.1.1.216 | 0.00089 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.1.220 | 0.001859 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.1.231 | 0.003096 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.1.261 | 0.008621 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.1.265 | 0.003155 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.1.282 | 0.011628 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.1.301 | 0.001179 |
ORF3a | 26 | S26S | tcA | tcG | 1 | 1 | B.1.1.306 | 0.000438 |
ORF3a | 26 | S26P | Tca | Cca | 1 | 1 | B.1.1.306 | 0.000438 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.1.311 | 0.000358 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.1.312 | 0.001912 |
ORF3a | 26 | S26S | tcA | tcT | 1 | 1 | B.1.1.312 | 0.001912 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.1.357 | 0.125 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.1.372 | 0.000689 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 26 | S26A | Tca | Gca | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | B.1.1.434 | 0.000349 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.1.448 | 0.002033 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.1.452 | 0.111111 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.1.500 | 0.02 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.1.512 | 0.028571 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.1.525 | 0.005464 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.1.528 | 0.004808 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | B.1.1.528 | 0.004808 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.1.56 | 0.017857 |
ORF3a | 26 | S26del1 | tcA | tc- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 26 | S26del2 | TCa | --a | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.111 | 0.001175 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.128 | 0.000635 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.131 | 0.008772 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.142 | 0.002899 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.147 | 0.000756 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.160.11 | 0.005714 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.160.15 | 0.00495 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.160.23 | 0.004831 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | B.1.160.33 | 0.004425 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.170 | 0.00431 |
ORF3a | 26 | S26del2 | TCa | --a | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | B.1.177.11 | 0.001698 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.177.12 | 0.000152 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.177.16 | 0.000664 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | B.1.177.19 | 0.001431 |
ORF3a | 26 | S26P | Tca | Cca | 1 | 1 | B.1.177.2 | 0.004545 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.177.60 | 0.000218 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.177.7 | 0.000165 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.177.81 | 0.000189 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.177.87 | 0.000728 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.179 | 0.003759 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.189 | 0.004292 |
ORF3a | 26 | S26T | Tca | Aca | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 26 | S26S | tcA | tcG | 1 | 1 | B.1.214.2 | 0.0006 |
ORF3a | 26 | S26X | tCa | tAa | 1 | 1 | B.1.214.2 | 0.0006 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.218 | 0.005155 |
ORF3a | 26 | S26P | Tca | Cca | 1 | 1 | B.1.218 | 0.005155 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | B.1.221.1 | 0.002907 |
ORF3a | 26 | S26P | Tca | Cca | 1 | 1 | B.1.234 | 0.000132 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.239 | 0.001221 |
ORF3a | 26 | S26S | tcA | tcG | 1 | 1 | B.1.241 | 0.000812 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 26 | S26A | Tca | Gca | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.243.1 | 0.022222 |
ORF3a | 26 | S26del1 | tCa | t-a | 1 | 1 | B.1.247 | 0.014925 |
ORF3a | 26 | S26S | tcA | tcG | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.280 | 0.007143 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.301 | 0.005917 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.311 | 0.000275 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.319 | 0.003049 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.323 | 0.020833 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.324 | 0.001605 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.326 | 0.007576 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.340 | 0.004292 |
ORF3a | 26 | S26S | tcA | tcT | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.355 | 0.011111 |
ORF3a | 26 | S26P | Tca | Cca | 1 | 1 | B.1.36 | 0.000146 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.36.10 | 0.004785 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | B.1.36.17 | 0.000494 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.36.17 | 0.000494 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.36.29 | 0.000517 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.36.38 | 0.001642 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.361 | 0.001289 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.366 | 0.004878 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.367 | 0.000792 |
ORF3a | 26 | S26S | tcA | tcG | 1 | 1 | B.1.369 | 0.000285 |
ORF3a | 26 | S26P | Tca | Cca | 1 | 1 | B.1.375 | 0.00082 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.378 | 0.006849 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.380 | 0.006623 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.389 | 0.001002 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | B.1.389 | 0.001002 |
ORF3a | 26 | S26P | Tca | Cca | 1 | 1 | B.1.390 | 0.010638 |
ORF3a | 26 | S26S | tcA | tcG | 1 | 1 | B.1.398 | 0.002976 |
ORF3a | 26 | S26del1 | Tca | -ca | 1 | 1 | B.1.409 | 0.000781 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.416 | 0.001269 |
ORF3a | 26 | S26S | tcA | tcG | 1 | 1 | B.1.416.1 | 0.001563 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.428 | 0.00102 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.432 | 0.011236 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.438 | 0.006536 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.438.1 | 0.000107 |
ORF3a | 26 | S26S | tcA | tcG | 1 | 1 | B.1.448 | 0.002625 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.448 | 0.002625 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.452 | 0.013699 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | B.1.459 | 0.004082 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.460 | 0.017857 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.469 | 0.00361 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.470 | 0.001404 |
ORF3a | 26 | S26S | tcA | tcG | 1 | 1 | B.1.470 | 0.001404 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.497 | 0.000315 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.499 | 0.00105 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.523 | 0.002451 |
ORF3a | 26 | S26S | tcA | tcG | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 26 | S26T | Tca | Aca | 1 | 1 | B.1.526 | 0.000024 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.527 | 0.003704 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.560 | 0.00463 |
ORF3a | 26 | S26S | tcA | tcC | 1 | 1 | B.1.577 | 0.000687 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.581 | 0.009434 |
ORF3a | 26 | S26S | tcA | tcG | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.599 | 0.00365 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.612 | 0.002653 |
ORF3a | 26 | S26del1 | tCa | t-a | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 26 | S26V | TCa | GTa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 26 | S26del1 | tCa | t-a | 1 | 1 | B.1.617.3 | 0.002985 |
ORF3a | 26 | S26S | tcA | tcG | 1 | 1 | B.1.617.3 | 0.002985 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | B.1.619 | 0.000871 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.621.1 | 0.000506 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.632 | 0.006711 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.70 | 0.02439 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.1.94 | 0.027027 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.20 | 0.023256 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.3.1 | 0.001658 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | B.37 | 0.028571 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | B.55 | 0.00295 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | C.1 | 0.002392 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | C.16 | 0.00106 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | C.35 | 0.000774 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | C.36.3 | 0.000567 |
ORF3a | 26 | S26A | Tca | Gca | 1 | 1 | C.37 | 0.000116 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | C.4 | 0.01 |
ORF3a | 26 | S26X | tCa | tAa | 1 | 1 | D.2 | 0.000075 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | D.2 | 0.000075 |
ORF3a | 26 | S26S | tcA | tcG | 1 | 1 | D.2 | 0.000075 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | N.4 | 0.004255 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | P.1 | 0.000016 |
ORF3a | 26 | S26S | tcA | tcG | 1 | 1 | P.1.13 | 0.000898 |
ORF3a | 26 | S26del | TCA | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | P.3 | 0.001595 |
ORF3a | 26 | S26L | tCa | tTa | 1 | 1 | P.7 | 0.004367 |
ORF3a | 26 | S26P | Tca | Cca | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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