CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 257 & Codon = ---

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a257N257deldelAAT---48064806126161-26163

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a257N257delAAT---48064806All0.000919
ORF3a257N257delAAT---838838B.1.1.70.00075
ORF3a257N257delAAT---521521A.270.862583
ORF3a257N257delAAT---399399AY.40.000621
ORF3a257N257delAAT---310310AY.430.001373
ORF3a257N257delAAT---243243B.1.617.20.000915
ORF3a257N257delAAT---164164AY.1030.001018
ORF3a257N257delAAT---153153B.10.001401
ORF3a257N257delAAT---144144B.1.2580.009583
ORF3a257N257delAAT---134134AY.260.003794
ORF3a257N257delAAT---118118AY.250.00071
ORF3a257N257delAAT---110110AY.4.20.002386
ORF3a257N257delAAT---106106AY.440.000645
ORF3a257N257delAAT---104104B.1.177.150.065615
ORF3a257N257delAAT---8686B.1.20.000757
ORF3a257N257delAAT---7474B.1.1770.000974
ORF3a257N257delAAT---6262AY.30.000617
ORF3a257N257delAAT---5555B.1.5170.023484
ORF3a257N257delAAT---4848B.1.5260.001128
ORF3a257N257delAAT---4343AY.750.002409
ORF3a257N257delAAT---3939B.1.1600.001216
ORF3a257N257delAAT---3737P.10.000583
ORF3a257N257delAAT---3636AY.470.00112
ORF3a257N257delAAT---3434AY.360.005039
ORF3a257N257delAAT---3434AY.390.00084
ORF3a257N257delAAT---3030AY.290.000473
ORF3a257N257delAAT---3030B.1.6210.002656
ORF3a257N257delAAT---2727B.1.1.5190.001072
ORF3a257N257delAAT---2525AY.50.000516
ORF3a257N257delAAT---2424AY.130.003863
ORF3a257N257delAAT---2222AY.1020.000583
ORF3a257N257delAAT---2121B.1.4290.000494
ORF3a257N257delAAT---2020B.1.10.000363
ORF3a257N257delAAT---1919AY.99.20.001751
ORF3a257N257delAAT---1818AY.710.008551
ORF3a257N257delAAT---1616AY.39.10.000634
ORF3a257N257delAAT---1616AY.510.014545
ORF3a257N257delAAT---1616B.1.3510.000476
ORF3a257N257delAAT---1515AY.200.000583
ORF3a257N257delAAT---1414B.1.6370.001023
ORF3a257N257delAAT---1313B.1.5950.003392
ORF3a257N257delAAT---1212AY.910.008766
ORF3a257N257delAAT---1111AY.1180.000689
ORF3a257N257delAAT---1111B.1.1.10.003594
ORF3a257N257delAAT---1111B.1.1.370.002122
ORF3a257N257delAAT---1111B.1.177.860.002018
ORF3a257N257delAAT---1111B.1.2430.000765
ORF3a257N257delAAT---1111Q.20.006748
ORF3a257N257delAAT---1010AY.90.000676
ORF3a257N257delAAT---1010B.1.5250.001132
ORF3a257N257delAAT---1010B.1.621.10.005058
ORF3a257N257delAAT---99A0.003483
ORF3a257N257delAAT---99AY.9.20.000331
ORF3a257N257delAAT---99B.1.177.210.000688
ORF3a257N257delAAT---99B.1.3110.002471
ORF3a257N257delAAT---99B.1.4270.000454
ORF3a257N257delAAT---88AY.3.10.000682
ORF3a257N257delAAT---88AY.420.000322
ORF3a257N257delAAT---88AY.98.10.000387
ORF3a257N257delAAT---88B.1.1.2820.093023
ORF3a257N257delAAT---88B.1.2210.000568
ORF3a257N257delAAT---88P.20.001493
ORF3a257N257delAAT---77AY.1170.000592
ORF3a257N257delAAT---77AY.70.001372
ORF3a257N257delAAT---77B.1.1.3720.004821
ORF3a257N257delAAT---77B.1.177.110.011885
ORF3a257N257delAAT---77B.1.5960.00061
ORF3a257N257delAAT---66AY.1130.000854
ORF3a257N257delAAT---66AY.1190.000212
ORF3a257N257delAAT---66AY.46.40.000987
ORF3a257N257delAAT---66AY.610.000629
ORF3a257N257delAAT---66AY.980.000474
ORF3a257N257delAAT---66B0.000767
ORF3a257N257delAAT---66B.1.2340.000792
ORF3a257N257delAAT---66B.1.3890.006012
ORF3a257N257delAAT---66B.1.6320.040268
ORF3a257N257delAAT---55AY.1200.000186
ORF3a257N257delAAT---55AY.1210.000677
ORF3a257N257delAAT---55AY.60.000206
ORF3a257N257delAAT---55AY.680.001369
ORF3a257N257delAAT---55B.1.2400.001078
ORF3a257N257delAAT---55P.1.140.000239
ORF3a257N257delAAT---55Q.80.000825
ORF3a257N257delAAT---55R.10.00045
ORF3a257N257delAAT---440.222222
ORF3a257N257delAAT---44AY.1000.000184
ORF3a257N257delAAT---44AY.1160.001147
ORF3a257N257delAAT---44AY.450.000487
ORF3a257N257delAAT---44AY.530.00115
ORF3a257N257delAAT---44AY.670.001857
ORF3a257N257delAAT---44B.1.1.2140.000222
ORF3a257N257delAAT---44B.1.1.250.002274
ORF3a257N257delAAT---44B.1.177.40.000844
ORF3a257N257delAAT---44B.1.360.000584
ORF3a257N257delAAT---44B.1.438.10.000429
ORF3a257N257delAAT---44C.370.000464
ORF3a257N257delAAT---44P.1.160.001496
ORF3a257N257delAAT---33A.290.015957
ORF3a257N257delAAT---33AY.120.000948
ORF3a257N257delAAT---33AY.140.000264
ORF3a257N257delAAT---33AY.29.10.000662
ORF3a257N257delAAT---33AY.350.000699
ORF3a257N257delAAT---33AY.5.30.001012
ORF3a257N257delAAT---33AY.9.10.000251
ORF3a257N257delAAT---33B.1.1.1700.003741
ORF3a257N257delAAT---33B.1.1.1890.004539
ORF3a257N257delAAT---33B.1.1.3110.001074
ORF3a257N257delAAT---33B.1.1.3170.001235
ORF3a257N257delAAT---33B.1.258.110.001189
ORF3a257N257delAAT---33B.1.258.170.000312
ORF3a257N257delAAT---33B.1.5770.002062
ORF3a257N257delAAT---33C.260.022059
ORF3a257N257delAAT---22A.10.000564
ORF3a257N257delAAT---22AY.100.00106
ORF3a257N257delAAT---22AY.160.000759
ORF3a257N257delAAT---22AY.240.000862
ORF3a257N257delAAT---22AY.460.000208
ORF3a257N257delAAT---22AY.75.10.000361
ORF3a257N257delAAT---22AY.920.000575
ORF3a257N257delAAT---22AY.950.001522
ORF3a257N257delAAT---22AY.970.003401
ORF3a257N257delAAT---22AY.990.002099
ORF3a257N257delAAT---22AZ.10.001735
ORF3a257N257delAAT---22B.1.1.2160.001781
ORF3a257N257delAAT---22B.1.1.2300.018349
ORF3a257N257delAAT---22B.1.1.390.001019
ORF3a257N257delAAT---22B.1.1.4340.000697
ORF3a257N257delAAT---22B.1.1.630.000772
ORF3a257N257delAAT---22B.1.110.30.001437
ORF3a257N257delAAT---22B.1.160.160.001859
ORF3a257N257delAAT---22B.1.177.160.001329
ORF3a257N257delAAT---22B.1.177.170.001642
ORF3a257N257delAAT---22B.1.177.600.000437
ORF3a257N257delAAT---22B.1.177.620.002384
ORF3a257N257delAAT---22B.1.177.70.00033
ORF3a257N257delAAT---22B.1.3980.005952
ORF3a257N257delAAT---22B.1.4250.005988
ORF3a257N257delAAT---22B.60.00182
ORF3a257N257delAAT---22C.36.30.001134
ORF3a257N257delAAT---22D.20.00015
ORF3a257N257delAAT---22P.1.100.000539
ORF3a257N257delAAT---22P.1.70.000639
ORF3a257N257delAAT---11A.20.000662
ORF3a257N257delAAT---11A.210.00277
ORF3a257N257delAAT---11AE.80.000489
ORF3a257N257delAAT---11AU.10.001266
ORF3a257N257delAAT---11AV.10.005051
ORF3a257N257delAAT---11AY.1010.00049
ORF3a257N257delAAT---11AY.1070.000466
ORF3a257N257delAAT---11AY.1090.00074
ORF3a257N257delAAT---11AY.1110.000183
ORF3a257N257delAAT---11AY.120.2.10.000498
ORF3a257N257delAAT---11AY.20.000356
ORF3a257N257delAAT---11AY.210.001898
ORF3a257N257delAAT---11AY.300.000396
ORF3a257N257delAAT---11AY.320.000532
ORF3a257N257delAAT---11AY.330.000067
ORF3a257N257delAAT---11AY.340.000097
ORF3a257N257delAAT---11AY.370.000316
ORF3a257N257delAAT---11AY.380.000499
ORF3a257N257delAAT---11AY.4.2.10.000149
ORF3a257N257delAAT---11AY.400.000964
ORF3a257N257delAAT---11AY.46.10.001027
ORF3a257N257delAAT---11AY.46.50.000198
ORF3a257N257delAAT---11AY.540.000095
ORF3a257N257delAAT---11AY.590.00053
ORF3a257N257delAAT---11AY.620.000436
ORF3a257N257delAAT---11AY.650.000533
ORF3a257N257delAAT---11AY.660.00107
ORF3a257N257delAAT---11AY.700.000209
ORF3a257N257delAAT---11AY.80.000606
ORF3a257N257delAAT---11AY.870.000833
ORF3a257N257delAAT---11AZ.20.000821
ORF3a257N257delAAT---11B.1.1.100.001115
ORF3a257N257delAAT---11B.1.1.1530.001095
ORF3a257N257delAAT---11B.1.1.2220.000204
ORF3a257N257delAAT---11B.1.1.280.000311
ORF3a257N257delAAT---11B.1.1.2850.006536
ORF3a257N257delAAT---11B.1.1.2940.001266
ORF3a257N257delAAT---11B.1.1.3010.001179
ORF3a257N257delAAT---11B.1.1.3150.008475
ORF3a257N257delAAT---11B.1.1.330.000421
ORF3a257N257delAAT---11B.1.1.3510.002793
ORF3a257N257delAAT---11B.1.1.40.002976
ORF3a257N257delAAT---11B.1.1.4200.001006
ORF3a257N257delAAT---11B.1.1.4300.041667
ORF3a257N257delAAT---11B.1.1.4320.001266
ORF3a257N257delAAT---11B.1.1.440.00241
ORF3a257N257delAAT---11B.1.1.500.000679
ORF3a257N257delAAT---11B.1.1280.000635
ORF3a257N257delAAT---11B.1.1490.003425
ORF3a257N257delAAT---11B.1.160.330.004425
ORF3a257N257delAAT---11B.1.177.310.011494
ORF3a257N257delAAT---11B.1.177.450.000381
ORF3a257N257delAAT---11B.1.177.50.001242
ORF3a257N257delAAT---11B.1.177.540.000606
ORF3a257N257delAAT---11B.1.177.650.000665
ORF3a257N257delAAT---11B.1.177.680.015152
ORF3a257N257delAAT---11B.1.177.770.000726
ORF3a257N257delAAT---11B.1.177.810.000189
ORF3a257N257delAAT---11B.1.177.870.000728
ORF3a257N257delAAT---11B.1.1780.02381
ORF3a257N257delAAT---11B.1.221.40.004167
ORF3a257N257delAAT---11B.1.2370.004975
ORF3a257N257delAAT---11B.1.2470.014925
ORF3a257N257delAAT---11B.1.258.30.001675
ORF3a257N257delAAT---11B.1.2650.001271
ORF3a257N257delAAT---11B.1.2790.000514
ORF3a257N257delAAT---11B.1.2980.002114
ORF3a257N257delAAT---11B.1.3200.001245
ORF3a257N257delAAT---11B.1.3240.001605
ORF3a257N257delAAT---11B.1.3360.002439
ORF3a257N257delAAT---11B.1.36.290.000517
ORF3a257N257delAAT---11B.1.36.80.001
ORF3a257N257delAAT---11B.1.3800.006623
ORF3a257N257delAAT---11B.1.3990.001934
ORF3a257N257delAAT---11B.1.4050.012346
ORF3a257N257delAAT---11B.1.4090.000781
ORF3a257N257delAAT---11B.1.4220.000812
ORF3a257N257delAAT---11B.1.4590.004082
ORF3a257N257delAAT---11B.1.466.20.000391
ORF3a257N257delAAT---11B.1.4700.001404
ORF3a257N257delAAT---11B.1.4730.019231
ORF3a257N257delAAT---11B.1.4970.000315
ORF3a257N257delAAT---11B.1.4990.00105
ORF3a257N257delAAT---11B.1.5210.004975
ORF3a257N257delAAT---11B.1.5510.00129
ORF3a257N257delAAT---11B.1.5610.000397
ORF3a257N257delAAT---11B.1.5640.000426
ORF3a257N257delAAT---11B.1.5750.000303
ORF3a257N257delAAT---11B.1.6090.000479
ORF3a257N257delAAT---11B.1.617.10.000129
ORF3a257N257delAAT---11B.1.6230.000536
ORF3a257N257delAAT---11B.1.6250.002353
ORF3a257N257delAAT---11B.1.6280.000352
ORF3a257N257delAAT---11B.1.6340.003425
ORF3a257N257delAAT---11B.400.000364
ORF3a257N257delAAT---11C.350.000774
ORF3a257N257delAAT---11C.36.3.10.002717
ORF3a257N257delAAT---11C.60.037037
ORF3a257N257delAAT---11P.60.003145
ORF3a257N257delAAT---11Q.10.000126
ORF3a257N257delAAT---11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.