CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 257

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF3a	257	N257del1		del	Aat	-at	21794	21780	0.999358	26161-26163
ORF3a	257	N257del1		del	AAt	-Nt	21794	4	0.000183537	26161-26163
ORF3a	257	N257del1		del	aaT	aa-	21794	3	0.000137653	26161-26163
ORF3a	257	N257del1		del	AaT	-aG	21794	3	0.000137653	26161-26163
ORF3a	257	N257del1		del	AaT	-aC	21794	2	0.0000917684	26161-26163
ORF3a	257	N257del1		del	AAT	-NN	21794	1	0.0000458842	26161-26163
ORF3a	257	N257del1		del	AaT	-aN	21794	1	0.0000458842	26161-26163
ORF3a	257	N257del		del	AAT	---	4806	4806	1	26161-26163
ORF3a	257	N257N		syn	aaT	aaC	2280	2280	1	26161-26163
ORF3a	257	N257D		nonsyn	Aat	Gat	989	989	1	26161-26163
ORF3a	257	N257K		nonsyn	aaT	aaG	827	819	0.990326	26161-26163
ORF3a	257	N257K		nonsyn	aaT	aaA	827	8	0.00967352	26161-26163
ORF3a	257	N257S		nonsyn	aAt	aGt	714	714	1	26161-26163
ORF3a	257	N257Y		nonsyn	Aat	Tat	208	208	1	26161-26163
ORF3a	257	N257H		nonsyn	Aat	Cat	104	104	1	26161-26163
ORF3a	257	N257del2		del	aAT	a--	74	58	0.783784	26161-26163
ORF3a	257	N257del2		del	AAt	--t	74	16	0.216216	26161-26163
ORF3a	257	N257X		nonsyn	AaT	TaG	43	43	1	26161-26163
ORF3a	257	N257Q		nonsyn	AaT	CaG	43	43	1	26161-26163
ORF3a	257	N257T		nonsyn	aAt	aCt	39	38	0.974359	26161-26163
ORF3a	257	N257T		nonsyn	aAT	aCC	39	1	0.025641	26161-26163
ORF3a	257	N257I		nonsyn	aAt	aTt	22	21	0.954545	26161-26163
ORF3a	257	N257I		nonsyn	aAT	aTC	22	1	0.0454545	26161-26163
ORF3a	257	N257E		nonsyn	AaT	GaA	3	3	1	26161-26163
ORF3a	257	N257V		nonsyn	AAT	GTC	3	2	0.666667	26161-26163
ORF3a	257	N257V		nonsyn	AAt	GTt	3	1	0.333333	26161-26163
ORF3a	257	N257G		nonsyn	AAt	GGt	1	1	1	26161-26163
ORF3a	257	N257C		nonsyn	AAt	TGt	1	1	1	26161-26163

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF3a	257	N257del1	Aat	-at	21780	21794	All	0.004166
ORF3a	257	N257del1	AAt	-Nt	4	21794	All	0.000001
ORF3a	257	N257del1	aaT	aa-	3	21794	All	0.000001
ORF3a	257	N257del1	AaT	-aG	3	21794	All	0.000001
ORF3a	257	N257del1	AaT	-aC	2	21794	All	0
ORF3a	257	N257del1	AaT	-aN	1	21794	All	0
ORF3a	257	N257del1	AAT	-NN	1	21794	All	0
ORF3a	257	N257del1	Aat	-at	10696	10701	B.1.621	0.9468
ORF3a	257	N257del1	AAt	-Nt	3	10701	B.1.621	0.000266
ORF3a	257	N257del1	AAT	-NN	1	10701	B.1.621	0.000089
ORF3a	257	N257del1	AaT	-aC	1	10701	B.1.621	0.000089
ORF3a	257	N257del	AAT	---	4806	4806	All	0.000919
ORF3a	257	N257del1	Aat	-at	2601	2601	B.1.628	0.91649
ORF3a	257	N257N	aaT	aaC	2280	2280	All	0.000436
ORF3a	257	N257del1	Aat	-at	1840	1840	B.1.621.1	0.930703
ORF3a	257	N257N	aaT	aaC	1296	1296	B.1.1.7	0.00116
ORF3a	257	N257D	Aat	Gat	989	989	All	0.000189
ORF3a	257	N257D	Aat	Gat	851	851	AY.3	0.008464
ORF3a	257	N257del	AAT	---	838	838	B.1.1.7	0.00075
ORF3a	257	N257K	aaT	aaG	819	827	All	0.000157
ORF3a	257	N257K	aaT	aaA	8	827	All	0.000002
ORF3a	257	N257K	aaT	aaG	729	729	B.1.2	0.006419
ORF3a	257	N257S	aAt	aGt	714	714	All	0.000137
ORF3a	257	N257del1	Aat	-at	637	638	B.1.1.7	0.00057
ORF3a	257	N257del1	AaT	-aC	1	638	B.1.1.7	0.000001
ORF3a	257	N257del1	Aat	-at	558	558	AY.29	0.008802
ORF3a	257	N257del	AAT	---	521	521	A.27	0.862583
ORF3a	257	N257del1	Aat	-at	437	437	B.1.627	0.882828
ORF3a	257	N257S	aAt	aGt	415	415	D.2	0.031142
ORF3a	257	N257N	aaT	aaC	411	411	B.1.160.26	0.995157
ORF3a	257	N257del	AAT	---	399	399	AY.4	0.000621
ORF3a	257	N257del1	Aat	-at	341	341	AY.4	0.000531
ORF3a	257	N257del1	Aat	-at	316	316	B.1	0.002894
ORF3a	257	N257del	AAT	---	310	310	AY.43	0.001373
ORF3a	257	N257del1	Aat	-at	271	271	B.1.631	0.912458
ORF3a	257	N257del1	Aat	-at	265	265	B.1.617.2	0.000998
ORF3a	257	N257del1	Aat	-at	253	253	B.1.634	0.866438
ORF3a	257	N257del1	Aat	-at	247	248	B.1.1	0.004481
ORF3a	257	N257del1	AAt	-Nt	1	248	B.1.1	0.000018
ORF3a	257	N257del	AAT	---	243	243	B.1.617.2	0.000915
ORF3a	257	N257del1	Aat	-at	211	211	AY.44	0.001284
ORF3a	257	N257Y	Aat	Tat	208	208	All	0.00004
ORF3a	257	N257del1	Aat	-at	194	194	B.1.1.222	0.039576
ORF3a	257	N257del1	Aat	-at	192	192	AV.1	0.969697
ORF3a	257	N257del1	Aat	-at	181	181	AY.103	0.001124
ORF3a	257	N257del1	Aat	-at	163	167	B.1.2	0.001435
ORF3a	257	N257del1	AaT	-aG	3	167	B.1.2	0.000026
ORF3a	257	N257del1	AaT	-aN	1	167	B.1.2	0.000009
ORF3a	257	N257del	AAT	---	164	164	AY.103	0.001018
ORF3a	257	N257del	AAT	---	153	153	B.1	0.001401
ORF3a	257	N257del	AAT	---	144	144	B.1.258	0.009583
ORF3a	257	N257del1	Aat	-at	136	137	B.1.160	0.004242
ORF3a	257	N257del1	aaT	aa-	1	137	B.1.160	0.000031
ORF3a	257	N257del1	Aat	-at	135	135	B.1.526	0.003173
ORF3a	257	N257del	AAT	---	134	134	AY.26	0.003794
ORF3a	257	N257del1	Aat	-at	128	128	AY.25	0.00077
ORF3a	257	N257S	aAt	aGt	123	123	AY.27	0.007961
ORF3a	257	N257del	AAT	---	118	118	AY.25	0.00071
ORF3a	257	N257del	AAT	---	110	110	AY.4.2	0.002386
ORF3a	257	N257del	AAT	---	106	106	AY.44	0.000645
ORF3a	257	N257H	Aat	Cat	104	104	All	0.00002
ORF3a	257	N257del	AAT	---	104	104	B.1.177.15	0.065615
ORF3a	257	N257del1	Aat	-at	92	92	B.1.1.519	0.003653
ORF3a	257	N257del	AAT	---	86	86	B.1.2	0.000757
ORF3a	257	N257del1	Aat	-at	84	84	AY.9.2	0.003085
ORF3a	257	N257N	aaT	aaC	75	75	AY.4	0.000117
ORF3a	257	N257del2	aAT	a--	58	74	All	0.000011
ORF3a	257	N257del2	AAt	--t	16	74	All	0.000003
ORF3a	257	N257del	AAT	---	74	74	B.1.177	0.000974
ORF3a	257	N257del1	Aat	-at	72	72	B.1.1.214	0.003993
ORF3a	257	N257del1	Aat	-at	68	68	AY.26	0.001925
ORF3a	257	N257del1	Aat	-at	65	65	B.1.243.2	0.942029
ORF3a	257	N257del	AAT	---	62	62	AY.3	0.000617
ORF3a	257	N257del1	Aat	-at	59	59	B.1.36	0.008608
ORF3a	257	N257Y	Aat	Tat	59	59	B.1.621	0.005223
ORF3a	257	N257del1	Aat	-at	58	58	B.1.429	0.001365
ORF3a	257	N257del1	Aat	-at	57	57	B.1.619.1	0.036562
ORF3a	257	N257del	AAT	---	55	55	B.1.517	0.023484
ORF3a	257	N257S	aAt	aGt	50	50	AY.37	0.015803
ORF3a	257	N257del	AAT	---	48	48	B.1.526	0.001128
ORF3a	257	N257del1	Aat	-at	46	46	AY.43	0.000204
ORF3a	257	N257del1	Aat	-at	45	45	B.1.177	0.000593
ORF3a	257	N257del1	Aat	-at	45	45	B.1.639	0.978261
ORF3a	257	N257del1	Aat	-at	44	44	AY.14	0.003873
ORF3a	257	N257del1	Aat	-at	44	44	B.1.565	0.035656
ORF3a	257	N257X	AaT	TaG	43	43	All	0.000008
ORF3a	257	N257Q	AaT	CaG	43	43	All	0.000008
ORF3a	257	N257del	AAT	---	43	43	AY.75	0.002409
ORF3a	257	N257N	aaT	aaC	42	42	AY.26	0.001189
ORF3a	257	N257del1	Aat	-at	42	42	AY.47	0.001306
ORF3a	257	N257H	Aat	Cat	41	41	B.1.621	0.003629
ORF3a	257	N257N	aaT	aaC	40	40	AY.43	0.000177
ORF3a	257	N257del1	Aat	-at	40	40	C.37	0.004643
ORF3a	257	N257T	aAt	aCt	38	39	All	0.000007
ORF3a	257	N257T	aAT	aCC	1	39	All	0
ORF3a	257	N257del	AAT	---	39	39	B.1.160	0.001216
ORF3a	257	N257del	AAT	---	37	37	P.1	0.000583
ORF3a	257	N257del1	Aat	-at	36	36	AY.117	0.003043
ORF3a	257	N257del1	Aat	-at	36	36	AY.3	0.000358
ORF3a	257	N257del	AAT	---	36	36	AY.47	0.00112
ORF3a	257	N257N	aaT	aaC	34	34	AY.3	0.000338
ORF3a	257	N257del	AAT	---	34	34	AY.36	0.005039
ORF3a	257	N257del	AAT	---	34	34	AY.39	0.00084
ORF3a	257	N257del1	Aat	-at	33	33	B.1.234	0.004354
ORF3a	257	N257del1	Aat	-at	33	33	C.40	0.916667
ORF3a	257	N257del	AAT	---	30	30	AY.29	0.000473
ORF3a	257	N257del	AAT	---	30	30	B.1.621	0.002656
ORF3a	257	N257del1	Aat	-at	28	28	B.1.243	0.001948
ORF3a	257	N257Q	AaT	CaG	28	28	B.1.621	0.002479
ORF3a	257	N257X	AaT	TaG	28	28	B.1.621	0.002479
ORF3a	257	N257del1	Aat	-at	27	27	AY.36	0.004002
ORF3a	257	N257K	aaT	aaG	26	27	B.1	0.000238
ORF3a	257	N257K	aaT	aaA	1	27	B.1	0.000009
ORF3a	257	N257del	AAT	---	27	27	B.1.1.519	0.001072
ORF3a	257	N257Y	Aat	Tat	26	26	AY.113	0.003702
ORF3a	257	N257del1	Aat	-at	25	25	AY.10	0.013249
ORF3a	257	N257N	aaT	aaC	25	25	AY.103	0.000155
ORF3a	257	N257N	aaT	aaC	25	25	AY.44	0.000152
ORF3a	257	N257del	AAT	---	25	25	AY.5	0.000516
ORF3a	257	N257del	AAT	---	24	24	AY.13	0.003863
ORF3a	257	N257N	aaT	aaC	24	24	B.1.2	0.000211
ORF3a	257	N257H	Aat	Cat	23	23	AY.113	0.003275
ORF3a	257	N257N	aaT	aaC	23	23	AY.120	0.000855
ORF3a	257	N257I	aAt	aTt	21	22	All	0.000004
ORF3a	257	N257I	aAT	aTC	1	22	All	0
ORF3a	257	N257del	AAT	---	22	22	AY.102	0.000583
ORF3a	257	N257del1	Aat	-at	22	22	P.1	0.000347
ORF3a	257	N257del	AAT	---	21	21	B.1.429	0.000494
ORF3a	257	N257N	aaT	aaC	21	21	B.1.617.2	0.000079
ORF3a	257	N257Y	Aat	Tat	21	21	B.1.621.1	0.010622
ORF3a	257	N257del	AAT	---	20	20	B.1.1	0.000363
ORF3a	257	N257del1	Aat	-at	19	19	AY.100	0.000874
ORF3a	257	N257del1	Aat	-at	19	19	AY.102	0.000504
ORF3a	257	N257Y	Aat	Tat	19	19	AY.44	0.000116
ORF3a	257	N257del	AAT	---	19	19	AY.99.2	0.001751
ORF3a	257	N257del1	Aat	-at	19	19	B.1.623	0.010193
ORF3a	257	N257del1	Aat	-at	18	18	AY.5	0.000372
ORF3a	257	N257del	AAT	---	18	18	AY.71	0.008551
ORF3a	257	N257K	aaT	aaG	17	18	B.1.617.2	0.000064
ORF3a	257	N257K	aaT	aaA	1	18	B.1.617.2	0.000004
ORF3a	257	N257del1	Aat	-at	17	17	A	0.006579
ORF3a	257	N257del1	Aat	-at	17	17	AY.113	0.002421
ORF3a	257	N257del1	Aat	-at	17	17	AY.119	0.0006
ORF3a	257	N257del1	Aat	-at	17	17	AY.9.1	0.001423
ORF3a	257	N257del1	Aat	-at	17	17	B.1.517	0.007259
ORF3a	257	N257N	aaT	aaC	16	16	AY.106	0.005358
ORF3a	257	N257del	AAT	---	16	16	AY.39.1	0.000634
ORF3a	257	N257del	AAT	---	16	16	AY.51	0.014545
ORF3a	257	N257N	aaT	aaC	16	16	B.1.160	0.000499
ORF3a	257	N257del	AAT	---	16	16	B.1.351	0.000476
ORF3a	257	N257S	aAt	aGt	16	16	B.1.369	0.004564
ORF3a	257	N257del	AAT	---	15	15	AY.20	0.000583
ORF3a	257	N257K	aaT	aaG	13	15	AY.4	0.00002
ORF3a	257	N257K	aaT	aaA	2	15	AY.4	0.000003
ORF3a	257	N257del1	Aat	-at	15	15	AY.75	0.00084
ORF3a	257	N257del1	Aat	-at	15	15	B.1.351	0.000446
ORF3a	257	N257Y	Aat	Tat	15	15	B.1.617.2	0.000056
ORF3a	257	N257del1	Aat	-at	14	14	AY.39	0.000346
ORF3a	257	N257S	aAt	aGt	14	14	AY.4	0.000022
ORF3a	257	N257D	Aat	Gat	14	14	AY.43	0.000062
ORF3a	257	N257S	aAt	aGt	14	14	B.1	0.000128
ORF3a	257	N257N	aaT	aaC	14	14	B.1	0.000128
ORF3a	257	N257del1	Aat	-at	14	14	B.1.220	0.152174
ORF3a	257	N257del	AAT	---	14	14	B.1.637	0.001023
ORF3a	257	N257N	aaT	aaC	14	14	Q.8	0.002309
ORF3a	257	N257X	AaT	TaG	13	13	AY.113	0.001851
ORF3a	257	N257Q	AaT	CaG	13	13	AY.113	0.001851
ORF3a	257	N257del1	Aat	-at	13	13	AY.20	0.000505
ORF3a	257	N257N	aaT	aaC	13	13	AY.25	0.000078
ORF3a	257	N257T	aAt	aCt	13	13	AY.51	0.011818
ORF3a	257	N257del1	Aat	-at	13	13	B.1.1.306	0.005699
ORF3a	257	N257del2	aAT	a--	13	13	B.1.177.21	0.000994
ORF3a	257	N257N	aaT	aaC	13	13	B.1.406	0.078788
ORF3a	257	N257del	AAT	---	13	13	B.1.595	0.003392
ORF3a	257	N257del1	Aat	-at	13	13	P.1.12	0.006292
ORF3a	257	N257del1	Aat	-at	12	12	AY.23	0.000837
ORF3a	257	N257del2	aAT	a--	12	12	AY.4	0.000019
ORF3a	257	N257del	AAT	---	12	12	AY.91	0.008766
ORF3a	257	N257del1	Aat	-at	12	12	B	0.001534
ORF3a	257	N257del1	Aat	-at	12	12	B.1.177.86	0.002201
ORF3a	257	N257del1	Aat	-at	12	12	B.1.221	0.000852
ORF3a	257	N257del	AAT	---	11	11	AY.118	0.000689
ORF3a	257	N257del1	Aat	-at	11	11	AY.24	0.004741
ORF3a	257	N257N	aaT	aaC	11	11	AY.7.1	0.00124
ORF3a	257	N257del	AAT	---	11	11	B.1.1.1	0.003594
ORF3a	257	N257del	AAT	---	11	11	B.1.1.37	0.002122
ORF3a	257	N257del	AAT	---	11	11	B.1.177.86	0.002018
ORF3a	257	N257del	AAT	---	11	11	B.1.243	0.000765
ORF3a	257	N257N	aaT	aaC	11	11	B.1.526	0.000259
ORF3a	257	N257D	Aat	Gat	11	11	B.1.617.2	0.000041
ORF3a	257	N257del	AAT	---	11	11	Q.2	0.006748
ORF3a	257	N257del2	aAT	a--	10	10	AY.43	0.000044
ORF3a	257	N257K	aaT	aaG	10	10	AY.43	0.000044
ORF3a	257	N257D	Aat	Gat	10	10	AY.73	0.006653
ORF3a	257	N257del	AAT	---	10	10	AY.9	0.000676
ORF3a	257	N257S	aAt	aGt	10	10	B.1.1	0.000181
ORF3a	257	N257del1	Aat	-at	10	10	B.1.1.171	0.036765
ORF3a	257	N257T	aAt	aCt	10	10	B.1.1.7	0.000009
ORF3a	257	N257Y	Aat	Tat	10	10	B.1.1.7	0.000009
ORF3a	257	N257del1	Aat	-at	10	10	B.1.110.3	0.007184
ORF3a	257	N257del1	Aat	-at	10	10	B.1.427	0.000505
ORF3a	257	N257del	AAT	---	10	10	B.1.525	0.001132
ORF3a	257	N257del1	Aat	-at	10	10	B.1.596	0.000871
ORF3a	257	N257del	AAT	---	10	10	B.1.621.1	0.005058
ORF3a	257	N257del1	Aat	-at	10	10	P.2	0.001866
ORF3a	257	N257del	AAT	---	9	9	A	0.003483
ORF3a	257	N257del1	Aat	-at	9	9	AY.120	0.000335
ORF3a	257	N257S	aAt	aGt	9	9	AY.34	0.000873
ORF3a	257	N257del1	Aat	-at	9	9	AY.39.1	0.000357
ORF3a	257	N257N	aaT	aaC	9	9	AY.46.5	0.001786
ORF3a	257	N257del	AAT	---	9	9	AY.9.2	0.000331
ORF3a	257	N257del1	Aat	-at	9	9	B.1.1.141	0.018109
ORF3a	257	N257D	Aat	Gat	9	9	B.1.1.7	0.000008
ORF3a	257	N257del	AAT	---	9	9	B.1.177.21	0.000688
ORF3a	257	N257D	Aat	Gat	9	9	B.1.2	0.000079
ORF3a	257	N257H	Aat	Cat	9	9	B.1.2	0.000079
ORF3a	257	N257del	AAT	---	9	9	B.1.311	0.002471
ORF3a	257	N257del1	Aat	-at	9	9	B.1.369	0.002567
ORF3a	257	N257del	AAT	---	9	9	B.1.427	0.000454
ORF3a	257	N257del1	Aat	-at	9	9	B.1.466.2	0.003521
ORF3a	257	N257S	aAt	aGt	9	9	B.1.575	0.002731
ORF3a	257	N257del1	Aat	-at	9	9	C.13	0.230769
ORF3a	257	N257N	aaT	aaC	9	9	P.1	0.000142
ORF3a	257	N257del	AAT	---	8	8	AY.3.1	0.000682
ORF3a	257	N257del	AAT	---	8	8	AY.42	0.000322
ORF3a	257	N257del	AAT	---	8	8	AY.98.1	0.000387
ORF3a	257	N257del	AAT	---	8	8	B.1.1.282	0.093023
ORF3a	257	N257del1	Aat	-at	8	8	B.1.1.432	0.010127
ORF3a	257	N257del1	Aat	-at	8	8	B.1.177.9	0.010652
ORF3a	257	N257S	aAt	aGt	8	8	B.1.2	0.00007
ORF3a	257	N257del	AAT	---	8	8	B.1.221	0.000568
ORF3a	257	N257del1	Aat	-at	8	8	B.1.258	0.000532
ORF3a	257	N257N	aaT	aaC	8	8	B.1.351	0.000238
ORF3a	257	N257del	AAT	---	8	8	P.2	0.001493
ORF3a	257	N257del	AAT	---	7	7	AY.117	0.000592
ORF3a	257	N257Y	Aat	Tat	7	7	AY.13	0.001127
ORF3a	257	N257del1	Aat	-at	7	7	AY.4.2	0.000152
ORF3a	257	N257del	AAT	---	7	7	AY.7	0.001372
ORF3a	257	N257del1	Aat	-at	7	7	AY.88	0.006189
ORF3a	257	N257del	AAT	---	7	7	B.1.1.372	0.004821
ORF3a	257	N257N	aaT	aaC	7	7	B.1.177	0.000092
ORF3a	257	N257del	AAT	---	7	7	B.1.177.11	0.011885
ORF3a	257	N257Y	Aat	Tat	7	7	B.1.177.84	0.046667
ORF3a	257	N257del	AAT	---	7	7	B.1.596	0.00061
ORF3a	257	N257del2	AAt	--t	7	7	B.1.621	0.00062
ORF3a	257	N257S	aAt	aGt	6	6	A.2.4	0.020202
ORF3a	257	N257del	AAT	---	6	6	AY.113	0.000854
ORF3a	257	N257del1	Aat	-at	6	6	AY.114	0.001387
ORF3a	257	N257del	AAT	---	6	6	AY.119	0.000212
ORF3a	257	N257D	Aat	Gat	6	6	AY.23	0.000418
ORF3a	257	N257del2	aAT	a--	6	6	AY.3	0.00006
ORF3a	257	N257N	aaT	aaC	6	6	AY.46	0.000624
ORF3a	257	N257del	AAT	---	6	6	AY.46.4	0.000987
ORF3a	257	N257del	AAT	---	6	6	AY.61	0.000629
ORF3a	257	N257D	Aat	Gat	6	6	AY.82	0.008141
ORF3a	257	N257del	AAT	---	6	6	AY.98	0.000474
ORF3a	257	N257del	AAT	---	6	6	B	0.000767
ORF3a	257	N257del1	Aat	-at	6	6	B.1.1.198	0.008811
ORF3a	257	N257del1	Aat	-at	6	6	B.1.1.413	0.041379
ORF3a	257	N257H	Aat	Cat	6	6	B.1.1.7	0.000005
ORF3a	257	N257del1	Aat	-at	6	6	B.1.160.29	0.025316
ORF3a	257	N257D	Aat	Gat	6	6	B.1.177	0.000079
ORF3a	257	N257del1	Aat	-at	6	6	B.1.177.83	0.008889
ORF3a	257	N257N	aaT	aaC	6	6	B.1.221	0.000426
ORF3a	257	N257del	AAT	---	6	6	B.1.234	0.000792
ORF3a	257	N257del1	Aat	-at	6	6	B.1.258.17	0.000624
ORF3a	257	N257del	AAT	---	6	6	B.1.389	0.006012
ORF3a	257	N257N	aaT	aaC	6	6	B.1.438.1	0.000644
ORF3a	257	N257del	AAT	---	6	6	B.1.632	0.040268
ORF3a	257	N257S	aAt	aGt	6	6	C.37	0.000696
ORF3a	257	N257del1	Aat	-at	6	6	Q.8	0.000989
ORF3a	257	N257del1	Aat	-at	5	5	A.2.5	0.002495
ORF3a	257	N257H	Aat	Cat	5	5	AY.102	0.000133
ORF3a	257	N257del	AAT	---	5	5	AY.120	0.000186
ORF3a	257	N257del	AAT	---	5	5	AY.121	0.000677
ORF3a	257	N257del1	Aat	-at	5	5	AY.13	0.000805
ORF3a	257	N257N	aaT	aaC	5	5	AY.19	0.005701
ORF3a	257	N257D	Aat	Gat	5	5	AY.4	0.000008
ORF3a	257	N257N	aaT	aaC	5	5	AY.4.2	0.000108
ORF3a	257	N257del	AAT	---	5	5	AY.6	0.000206
ORF3a	257	N257del	AAT	---	5	5	AY.68	0.001369
ORF3a	257	N257Y	Aat	Tat	5	5	B.1	0.000046
ORF3a	257	N257del1	Aat	-at	5	5	B.1.1.25	0.002843
ORF3a	257	N257del1	Aat	-at	5	5	B.1.1.297	0.011186
ORF3a	257	N257del1	Aat	-at	5	5	B.1.1.381	0.2
ORF3a	257	N257I	aAt	aTt	5	5	B.1.1.7	0.000004
ORF3a	257	N257S	aAt	aGt	5	5	B.1.1.7	0.000004
ORF3a	257	N257del1	Aat	-at	5	5	B.1.1.70	0.001705
ORF3a	257	N257del1	Aat	-at	5	5	B.1.128	0.003177
ORF3a	257	N257K	aaT	aaG	5	5	B.1.234	0.00066
ORF3a	257	N257del	AAT	---	5	5	B.1.240	0.001078
ORF3a	257	N257del1	Aat	-at	5	5	B.1.247	0.074627
ORF3a	257	N257N	aaT	aaC	5	5	B.1.429	0.000118
ORF3a	257	N257del1	Aat	-at	5	5	B.1.637	0.000365
ORF3a	257	N257del	AAT	---	5	5	P.1.14	0.000239
ORF3a	257	N257del1	Aat	-at	5	5	P.5	0.068493
ORF3a	257	N257del	AAT	---	5	5	Q.8	0.000825
ORF3a	257	N257del	AAT	---	5	5	R.1	0.00045
ORF3a	257	N257del	AAT	---	4	4		0.222222
ORF3a	257	N257del1	Aat	-at	4	4	A.2	0.002647
ORF3a	257	N257del	AAT	---	4	4	AY.100	0.000184
ORF3a	257	N257D	Aat	Gat	4	4	AY.102	0.000106
ORF3a	257	N257del	AAT	---	4	4	AY.116	0.001147
ORF3a	257	N257del1	Aat	-at	4	4	AY.120.1	0.001284
ORF3a	257	N257del1	Aat	-at	4	4	AY.121	0.000541
ORF3a	257	N257N	aaT	aaC	4	4	AY.39	0.000099
ORF3a	257	N257D	Aat	Gat	4	4	AY.39	0.000099
ORF3a	257	N257del	AAT	---	4	4	AY.45	0.000487
ORF3a	257	N257Y	Aat	Tat	4	4	AY.51	0.003636
ORF3a	257	N257del	AAT	---	4	4	AY.53	0.00115
ORF3a	257	N257del1	Aat	-at	4	4	AY.6	0.000165
ORF3a	257	N257del1	Aat	-at	4	4	AY.61	0.000419
ORF3a	257	N257del	AAT	---	4	4	AY.67	0.001857
ORF3a	257	N257del1	Aat	-at	4	4	AY.68	0.001095
ORF3a	257	N257del1	Aat	-at	4	4	AY.92	0.001149
ORF3a	257	N257D	Aat	Gat	4	4	B.1.1	0.000073
ORF3a	257	N257del	AAT	---	4	4	B.1.1.214	0.000222
ORF3a	257	N257del	AAT	---	4	4	B.1.1.25	0.002274
ORF3a	257	N257del1	Aat	-at	4	4	B.1.1.28	0.001245
ORF3a	257	N257del1	Aat	-at	4	4	B.1.1.317	0.001647
ORF3a	257	N257del1	Aat	-at	4	4	B.1.1.318	0.001207
ORF3a	257	N257del1	Aat	-at	4	4	B.1.1.326	0.007042
ORF3a	257	N257K	aaT	aaG	4	4	B.1.1.335	0.051948
ORF3a	257	N257del1	Aat	-at	4	4	B.1.157	0.01194
ORF3a	257	N257del	AAT	---	4	4	B.1.177.4	0.000844
ORF3a	257	N257N	aaT	aaC	4	4	B.1.177.81	0.000757
ORF3a	257	N257del1	Aat	-at	4	4	B.1.214.2	0.002398
ORF3a	257	N257del	AAT	---	4	4	B.1.36	0.000584
ORF3a	257	N257del	AAT	---	4	4	B.1.438.1	0.000429
ORF3a	257	N257K	aaT	aaG	4	4	B.1.596	0.000349
ORF3a	257	N257del	AAT	---	4	4	C.37	0.000464
ORF3a	257	N257del1	Aat	-at	4	4	D.2	0.0003
ORF3a	257	N257del1	Aat	-at	4	4	P.1.10	0.001078
ORF3a	257	N257del1	Aat	-at	4	4	P.1.14	0.000191
ORF3a	257	N257del	AAT	---	4	4	P.1.16	0.001496
ORF3a	257	N257del	AAT	---	3	3	A.29	0.015957
ORF3a	257	N257E	AaT	GaA	3	3	All	0.000001
ORF3a	257	N257V	AAT	GTC	2	3	All	0
ORF3a	257	N257V	AAt	GTt	1	3	All	0
ORF3a	257	N257N	aaT	aaC	3	3	AY.100	0.000138
ORF3a	257	N257del2	aAT	a--	3	3	AY.103	0.000019
ORF3a	257	N257H	Aat	Cat	3	3	AY.103	0.000019
ORF3a	257	N257D	Aat	Gat	3	3	AY.117	0.000254
ORF3a	257	N257del1	Aat	-at	2	3	AY.118	0.000125
ORF3a	257	N257del1	aaT	aa-	1	3	AY.118	0.000063
ORF3a	257	N257D	Aat	Gat	3	3	AY.119	0.000106
ORF3a	257	N257del1	Aat	-at	3	3	AY.12	0.000948
ORF3a	257	N257del	AAT	---	3	3	AY.12	0.000948
ORF3a	257	N257del	AAT	---	3	3	AY.14	0.000264
ORF3a	257	N257D	Aat	Gat	3	3	AY.25	0.000018
ORF3a	257	N257S	aAt	aGt	3	3	AY.25	0.000018
ORF3a	257	N257del	AAT	---	3	3	AY.29.1	0.000662
ORF3a	257	N257del1	Aat	-at	3	3	AY.29.1	0.000662
ORF3a	257	N257Y	Aat	Tat	3	3	AY.3	0.00003
ORF3a	257	N257N	aaT	aaC	3	3	AY.33	0.0002
ORF3a	257	N257del	AAT	---	3	3	AY.35	0.000699
ORF3a	257	N257del1	Aat	-at	3	3	AY.38	0.001498
ORF3a	257	N257N	aaT	aaC	3	3	AY.4.2.1	0.000447
ORF3a	257	N257del1	Aat	-at	3	3	AY.42	0.000121
ORF3a	257	N257T	aAt	aCt	3	3	AY.43	0.000013
ORF3a	257	N257T	aAt	aCt	3	3	AY.44	0.000018
ORF3a	257	N257del1	Aat	-at	3	3	AY.46.6	0.000217
ORF3a	257	N257Y	Aat	Tat	3	3	AY.5	0.000062
ORF3a	257	N257del	AAT	---	3	3	AY.5.3	0.001012
ORF3a	257	N257del1	Aat	-at	3	3	AY.57	0.001969
ORF3a	257	N257del	AAT	---	3	3	AY.9.1	0.000251
ORF3a	257	N257del1	Aat	-at	3	3	AY.98	0.000237
ORF3a	257	N257del1	Aat	-at	3	3	AY.99.2	0.000276
ORF3a	257	N257del1	Aat	-at	3	3	AZ.2	0.002463
ORF3a	257	N257D	Aat	Gat	3	3	B.1	0.000027
ORF3a	257	N257del1	Aat	-at	3	3	B.1.1.1	0.00098
ORF3a	257	N257del1	Aat	-at	3	3	B.1.1.165	0.046154
ORF3a	257	N257del	AAT	---	3	3	B.1.1.170	0.003741
ORF3a	257	N257del	AAT	---	3	3	B.1.1.189	0.004539
ORF3a	257	N257del1	Aat	-at	3	3	B.1.1.258	0.009772
ORF3a	257	N257del1	Aat	-at	3	3	B.1.1.284	0.000322
ORF3a	257	N257del	AAT	---	3	3	B.1.1.311	0.001074
ORF3a	257	N257del	AAT	---	3	3	B.1.1.317	0.001235
ORF3a	257	N257H	Aat	Cat	3	3	B.1.1.317	0.001235
ORF3a	257	N257N	aaT	aaC	3	3	B.1.1.33	0.001263
ORF3a	257	N257del1	Aat	-at	3	3	B.1.1.39	0.001529
ORF3a	257	N257del1	Aat	-at	3	3	B.1.1.397	0.006757
ORF3a	257	N257del2	aAT	a--	3	3	B.1.1.7	0.000003
ORF3a	257	N257del1	Aat	-at	3	3	B.1.177.73	0.001699
ORF3a	257	N257del1	Aat	-at	3	3	B.1.177.75	0.003122
ORF3a	257	N257del1	Aat	-at	3	3	B.1.206	0.002447
ORF3a	257	N257del1	Aat	-at	3	3	B.1.232	0.001612
ORF3a	257	N257del1	Aat	-at	3	3	B.1.240	0.000647
ORF3a	257	N257N	aaT	aaC	3	3	B.1.258	0.0002
ORF3a	257	N257del	AAT	---	3	3	B.1.258.11	0.001189
ORF3a	257	N257del	AAT	---	3	3	B.1.258.17	0.000312
ORF3a	257	N257del1	Aat	-at	3	3	B.1.280	0.021429
ORF3a	257	N257S	aAt	aGt	3	3	B.1.409	0.002344
ORF3a	257	N257del1	Aat	-at	3	3	B.1.456	0.009804
ORF3a	257	N257del1	Aat	-at	3	3	B.1.524	0.004219
ORF3a	257	N257del1	Aat	-at	3	3	B.1.533	0.028846
ORF3a	257	N257del1	Aat	-at	3	3	B.1.576	0.00272
ORF3a	257	N257del	AAT	---	3	3	B.1.577	0.002062
ORF3a	257	N257del	AAT	---	3	3	C.26	0.022059
ORF3a	257	N257del1	Aat	-at	3	3	C.37.1	0.007853
ORF3a	257	N257N	aaT	aaC	3	3	P.2	0.00056
ORF3a	257	N257V	AAT	GTC	2	2		0.111111
ORF3a	257	N257del	AAT	---	2	2	A.1	0.000564
ORF3a	257	N257del	AAT	---	2	2	AY.10	0.00106
ORF3a	257	N257del2	AAt	--t	2	2	AY.100	0.000092
ORF3a	257	N257N	aaT	aaC	2	2	AY.102	0.000053
ORF3a	257	N257N	aaT	aaC	2	2	AY.121	0.000271
ORF3a	257	N257del	AAT	---	2	2	AY.16	0.000759
ORF3a	257	N257del1	Aat	-at	2	2	AY.16	0.000759
ORF3a	257	N257K	aaT	aaG	2	2	AY.16.1	0.00094
ORF3a	257	N257N	aaT	aaC	2	2	AY.20	0.000078
ORF3a	257	N257N	aaT	aaC	2	2	AY.23	0.000139
ORF3a	257	N257del	AAT	---	2	2	AY.24	0.000862
ORF3a	257	N257I	aAt	aTt	2	2	AY.25	0.000012
ORF3a	257	N257S	aAt	aGt	2	2	AY.26	0.000057
ORF3a	257	N257D	Aat	Gat	2	2	AY.26	0.000057
ORF3a	257	N257N	aaT	aaC	2	2	AY.29	0.000032
ORF3a	257	N257del1	Aat	-at	2	2	AY.33	0.000134
ORF3a	257	N257del2	aAT	a--	1	2	AY.39	0.000025
ORF3a	257	N257del2	AAt	--t	1	2	AY.39	0.000025
ORF3a	257	N257I	aAt	aTt	2	2	AY.4	0.000003
ORF3a	257	N257H	Aat	Cat	2	2	AY.4	0.000003
ORF3a	257	N257Y	Aat	Tat	2	2	AY.4	0.000003
ORF3a	257	N257Y	Aat	Tat	2	2	AY.43	0.000009
ORF3a	257	N257del1	Aat	-at	2	2	AY.45	0.000243
ORF3a	257	N257del	AAT	---	2	2	AY.46	0.000208
ORF3a	257	N257del1	Aat	-at	2	2	AY.46	0.000208
ORF3a	257	N257D	Aat	Gat	2	2	AY.5	0.000041
ORF3a	257	N257del	AAT	---	2	2	AY.75.1	0.000361
ORF3a	257	N257D	Aat	Gat	2	2	AY.79	0.002421
ORF3a	257	N257del1	Aat	-at	2	2	AY.9	0.000135
ORF3a	257	N257del	AAT	---	2	2	AY.92	0.000575
ORF3a	257	N257del	AAT	---	2	2	AY.95	0.001522
ORF3a	257	N257del	AAT	---	2	2	AY.97	0.003401
ORF3a	257	N257Y	Aat	Tat	2	2	AY.98.1	0.000097
ORF3a	257	N257D	Aat	Gat	2	2	AY.98.1	0.000097
ORF3a	257	N257N	aaT	aaC	2	2	AY.98.1	0.000097
ORF3a	257	N257del	AAT	---	2	2	AY.99	0.002099
ORF3a	257	N257del	AAT	---	2	2	AZ.1	0.001735
ORF3a	257	N257E	AaT	GaA	2	2	B.1	0.000018
ORF3a	257	N257N	aaT	aaC	2	2	B.1.1	0.000036
ORF3a	257	N257del1	Aat	-at	2	2	B.1.1.153	0.002191
ORF3a	257	N257del1	Aat	-at	2	2	B.1.1.159	0.009346
ORF3a	257	N257del1	Aat	-at	2	2	B.1.1.174	0.006757
ORF3a	257	N257del1	Aat	-at	2	2	B.1.1.189	0.003026
ORF3a	257	N257del1	Aat	-at	2	2	B.1.1.208	0.02439
ORF3a	257	N257del	AAT	---	2	2	B.1.1.216	0.001781
ORF3a	257	N257del1	Aat	-at	2	2	B.1.1.220	0.003717
ORF3a	257	N257del	AAT	---	2	2	B.1.1.230	0.018349
ORF3a	257	N257N	aaT	aaC	2	2	B.1.1.243	0.008163
ORF3a	257	N257del1	Aat	-at	2	2	B.1.1.311	0.000716
ORF3a	257	N257del1	Aat	-at	2	2	B.1.1.33	0.000842
ORF3a	257	N257del1	Aat	-at	2	2	B.1.1.385	0.008929
ORF3a	257	N257del	AAT	---	2	2	B.1.1.39	0.001019
ORF3a	257	N257del1	Aat	-at	2	2	B.1.1.4	0.005952
ORF3a	257	N257del1	Aat	-at	2	2	B.1.1.409	0.005666
ORF3a	257	N257del	AAT	---	2	2	B.1.1.434	0.000697
ORF3a	257	N257N	aaT	aaC	2	2	B.1.1.441	0.1
ORF3a	257	N257del1	Aat	-at	2	2	B.1.1.46	0.008734
ORF3a	257	N257del	AAT	---	2	2	B.1.1.63	0.000772
ORF3a	257	N257del1	Aat	-at	2	2	B.1.1.99	0.047619
ORF3a	257	N257del	AAT	---	2	2	B.1.110.3	0.001437
ORF3a	257	N257del1	Aat	-at	2	2	B.1.111	0.00235
ORF3a	257	N257del1	Aat	-at	2	2	B.1.139	0.001466
ORF3a	257	N257H	Aat	Cat	2	2	B.1.160	0.000062
ORF3a	257	N257del1	Aat	-at	2	2	B.1.160.10	0.016129
ORF3a	257	N257del	AAT	---	2	2	B.1.160.16	0.001859
ORF3a	257	N257del	AAT	---	2	2	B.1.177.16	0.001329
ORF3a	257	N257del	AAT	---	2	2	B.1.177.17	0.001642
ORF3a	257	N257del	AAT	---	2	2	B.1.177.60	0.000437
ORF3a	257	N257del	AAT	---	2	2	B.1.177.62	0.002384
ORF3a	257	N257del	AAT	---	2	2	B.1.177.7	0.00033
ORF3a	257	N257del1	Aat	-at	2	2	B.1.177.81	0.000379
ORF3a	257	N257Y	Aat	Tat	2	2	B.1.2	0.000018
ORF3a	257	N257T	aAt	aCt	2	2	B.1.221.3	0.001667
ORF3a	257	N257N	aaT	aaC	2	2	B.1.234	0.000264
ORF3a	257	N257N	aaT	aaC	2	2	B.1.243	0.000139
ORF3a	257	N257del1	Aat	-at	2	2	B.1.265	0.002541
ORF3a	257	N257del1	Aat	-at	2	2	B.1.311	0.000549
ORF3a	257	N257S	aAt	aGt	2	2	B.1.351	0.000059
ORF3a	257	N257del2	aAT	a--	2	2	B.1.36.1	0.002281
ORF3a	257	N257del1	Aat	-at	2	2	B.1.36.17	0.000988
ORF3a	257	N257N	aaT	aaC	2	2	B.1.36.29	0.001035
ORF3a	257	N257del1	Aat	-at	2	2	B.1.36.8	0.002
ORF3a	257	N257del1	Aat	-at	2	2	B.1.380	0.013245
ORF3a	257	N257T	aAt	aCt	2	2	B.1.398	0.005952
ORF3a	257	N257del	AAT	---	2	2	B.1.398	0.005952
ORF3a	257	N257del1	Aat	-at	2	2	B.1.416	0.002538
ORF3a	257	N257del	AAT	---	2	2	B.1.425	0.005988
ORF3a	257	N257N	aaT	aaC	2	2	B.1.466.2	0.000782
ORF3a	257	N257del1	Aat	-at	2	2	B.1.471	0.005464
ORF3a	257	N257del1	Aat	-at	2	2	B.1.474	0.003802
ORF3a	257	N257K	aaT	aaG	1	2	B.1.497	0.000315
ORF3a	257	N257K	aaT	aaA	1	2	B.1.497	0.000315
ORF3a	257	N257del1	Aat	-at	2	2	B.1.575	0.000607
ORF3a	257	N257del2	aAT	a--	2	2	B.1.617.2	0.000008
ORF3a	257	N257H	Aat	Cat	2	2	B.1.617.2	0.000008
ORF3a	257	N257S	aAt	aGt	2	2	B.1.617.2	0.000008
ORF3a	257	N257del1	Aat	-at	2	2	B.1.619	0.001742
ORF3a	257	N257del1	Aat	-at	2	2	B.1.9.5	0.011364
ORF3a	257	N257del1	Aat	-at	2	2	B.55	0.0059
ORF3a	257	N257del	AAT	---	2	2	B.6	0.00182
ORF3a	257	N257D	Aat	Gat	2	2	C.1	0.004785
ORF3a	257	N257del	AAT	---	2	2	C.36.3	0.001134
ORF3a	257	N257del1	Aat	-at	2	2	C.36.3	0.001134
ORF3a	257	N257N	aaT	aaC	2	2	D.2	0.00015
ORF3a	257	N257del	AAT	---	2	2	D.2	0.00015
ORF3a	257	N257del	AAT	---	2	2	P.1.10	0.000539
ORF3a	257	N257del1	Aat	-at	2	2	P.1.17	0.000324
ORF3a	257	N257del	AAT	---	2	2	P.1.7	0.000639
ORF3a	257	N257del1	Aat	-at	2	2	Q.3	0.00029
ORF3a	257	N257D	Aat	Gat	2	2	Q.4	0.00091
ORF3a	257	N257del1	Aat	-at	2	2	Q.4	0.00091
ORF3a	257	N257del1	Aat	-at	2	2	R.1	0.00018
ORF3a	257	N257K	aaT	aaA	1	1		0.055556
ORF3a	257	N257del1	Aat	-at	1	1	A.19	0.009434
ORF3a	257	N257del	AAT	---	1	1	A.2	0.000662
ORF3a	257	N257del	AAT	---	1	1	A.21	0.00277
ORF3a	257	N257K	aaT	aaG	1	1	A.27	0.001656
ORF3a	257	N257del2	AAt	--t	1	1	A.27	0.001656
ORF3a	257	N257del1	Aat	-at	1	1	A.28	0.002646
ORF3a	257	N257del1	Aat	-at	1	1	A.5	0.001923
ORF3a	257	N257del	AAT	---	1	1	AE.8	0.000489
ORF3a	257	N257G	AAt	GGt	1	1	All	0
ORF3a	257	N257C	AAt	TGt	1	1	All	0
ORF3a	257	N257del1	Aat	-at	1	1	AU.1	0.001266
ORF3a	257	N257del	AAT	---	1	1	AU.1	0.001266
ORF3a	257	N257Y	Aat	Tat	1	1	AU.2	0.002421
ORF3a	257	N257del1	Aat	-at	1	1	AU.3	0.00211
ORF3a	257	N257del	AAT	---	1	1	AV.1	0.005051
ORF3a	257	N257Y	Aat	Tat	1	1	AV.1	0.005051
ORF3a	257	N257del1	Aat	-at	1	1	AY.1	0.000396
ORF3a	257	N257I	aAt	aTt	1	1	AY.100	0.000046
ORF3a	257	N257D	Aat	Gat	1	1	AY.100	0.000046
ORF3a	257	N257del	AAT	---	1	1	AY.101	0.00049
ORF3a	257	N257S	aAt	aGt	1	1	AY.102	0.000027
ORF3a	257	N257Y	Aat	Tat	1	1	AY.103	0.000006
ORF3a	257	N257D	Aat	Gat	1	1	AY.103	0.000006
ORF3a	257	N257T	aAt	aCt	1	1	AY.103	0.000006
ORF3a	257	N257del1	Aat	-at	1	1	AY.104	0.001984
ORF3a	257	N257N	aaT	aaC	1	1	AY.105	0.000643
ORF3a	257	N257del1	Aat	-at	1	1	AY.106	0.000335
ORF3a	257	N257del	AAT	---	1	1	AY.107	0.000466
ORF3a	257	N257del1	aaT	aa-	1	1	AY.108	0.001103
ORF3a	257	N257del	AAT	---	1	1	AY.109	0.00074
ORF3a	257	N257del	AAT	---	1	1	AY.111	0.000183
ORF3a	257	N257del1	Aat	-at	1	1	AY.111	0.000183
ORF3a	257	N257N	aaT	aaC	1	1	AY.113	0.000142
ORF3a	257	N257D	Aat	Gat	1	1	AY.113	0.000142
ORF3a	257	N257S	aAt	aGt	1	1	AY.114	0.000231
ORF3a	257	N257N	aaT	aaC	1	1	AY.116	0.000287
ORF3a	257	N257del1	Aat	-at	1	1	AY.116	0.000287
ORF3a	257	N257D	Aat	Gat	1	1	AY.116.1	0.000311
ORF3a	257	N257X	AaT	TaG	1	1	AY.117	0.000085
ORF3a	257	N257N	aaT	aaC	1	1	AY.117	0.000085
ORF3a	257	N257H	Aat	Cat	1	1	AY.117	0.000085
ORF3a	257	N257Q	AaT	CaG	1	1	AY.117	0.000085
ORF3a	257	N257Y	Aat	Tat	1	1	AY.117	0.000085
ORF3a	257	N257N	aaT	aaC	1	1	AY.119	0.000035
ORF3a	257	N257S	aAt	aGt	1	1	AY.12	0.000316
ORF3a	257	N257H	Aat	Cat	1	1	AY.120.1	0.000321
ORF3a	257	N257del	AAT	---	1	1	AY.120.2.1	0.000498
ORF3a	257	N257del	AAT	---	1	1	AY.2	0.000356
ORF3a	257	N257del	AAT	---	1	1	AY.21	0.001898
ORF3a	257	N257Y	Aat	Tat	1	1	AY.25	0.000006
ORF3a	257	N257Q	AaT	CaG	1	1	AY.26	0.000028
ORF3a	257	N257X	AaT	TaG	1	1	AY.26	0.000028
ORF3a	257	N257H	Aat	Cat	1	1	AY.26	0.000028
ORF3a	257	N257Y	Aat	Tat	1	1	AY.26	0.000028
ORF3a	257	N257E	AaT	GaA	1	1	AY.26	0.000028
ORF3a	257	N257N	aaT	aaC	1	1	AY.27	0.000065
ORF3a	257	N257C	AAt	TGt	1	1	AY.3	0.00001
ORF3a	257	N257S	aAt	aGt	1	1	AY.3	0.00001
ORF3a	257	N257T	aAt	aCt	1	1	AY.3	0.00001
ORF3a	257	N257del2	aAT	a--	1	1	AY.3.1	0.000085
ORF3a	257	N257del1	Aat	-at	1	1	AY.30	0.000396
ORF3a	257	N257del	AAT	---	1	1	AY.30	0.000396
ORF3a	257	N257del	AAT	---	1	1	AY.32	0.000532
ORF3a	257	N257N	aaT	aaC	1	1	AY.32	0.000532
ORF3a	257	N257del	AAT	---	1	1	AY.33	0.000067
ORF3a	257	N257del	AAT	---	1	1	AY.34	0.000097
ORF3a	257	N257del1	Aat	-at	1	1	AY.35	0.000233
ORF3a	257	N257S	aAt	aGt	1	1	AY.36	0.000148
ORF3a	257	N257Y	Aat	Tat	1	1	AY.36	0.000148
ORF3a	257	N257del	AAT	---	1	1	AY.37	0.000316
ORF3a	257	N257del	AAT	---	1	1	AY.38	0.000499
ORF3a	257	N257del2	aAT	a--	1	1	AY.39.1	0.00004
ORF3a	257	N257T	aAt	aCt	1	1	AY.4	0.000002
ORF3a	257	N257S	aAt	aGt	1	1	AY.4.2	0.000022
ORF3a	257	N257del	AAT	---	1	1	AY.4.2.1	0.000149
ORF3a	257	N257del1	Aat	-at	1	1	AY.4.3	0.000842
ORF3a	257	N257del1	Aat	-at	1	1	AY.4.5	0.000107
ORF3a	257	N257del2	aAT	a--	1	1	AY.4.5	0.000107
ORF3a	257	N257del	AAT	---	1	1	AY.40	0.000964
ORF3a	257	N257N	aaT	aaC	1	1	AY.42	0.00004
ORF3a	257	N257I	aAt	aTt	1	1	AY.43	0.000004
ORF3a	257	N257D	Aat	Gat	1	1	AY.44	0.000006
ORF3a	257	N257I	aAt	aTt	1	1	AY.44	0.000006
ORF3a	257	N257S	aAt	aGt	1	1	AY.44	0.000006
ORF3a	257	N257K	aaT	aaG	1	1	AY.45	0.000122
ORF3a	257	N257del	AAT	---	1	1	AY.46.1	0.001027
ORF3a	257	N257del2	AAt	--t	1	1	AY.46.4	0.000165
ORF3a	257	N257del	AAT	---	1	1	AY.46.5	0.000198
ORF3a	257	N257S	aAt	aGt	1	1	AY.46.5	0.000198
ORF3a	257	N257N	aaT	aaC	1	1	AY.46.6	0.000072
ORF3a	257	N257D	Aat	Gat	1	1	AY.47	0.000031
ORF3a	257	N257Y	Aat	Tat	1	1	AY.47	0.000031
ORF3a	257	N257del2	aAT	a--	1	1	AY.5	0.000021
ORF3a	257	N257del1	Aat	-at	1	1	AY.5.3	0.000337
ORF3a	257	N257D	Aat	Gat	1	1	AY.5.3	0.000337
ORF3a	257	N257del1	Aat	-at	1	1	AY.51	0.000909
ORF3a	257	N257I	aAt	aTt	1	1	AY.53	0.000288
ORF3a	257	N257I	aAt	aTt	1	1	AY.54	0.000095
ORF3a	257	N257del	AAT	---	1	1	AY.54	0.000095
ORF3a	257	N257del1	Aat	-at	1	1	AY.54	0.000095
ORF3a	257	N257del1	Aat	-at	1	1	AY.55	0.000917
ORF3a	257	N257D	Aat	Gat	1	1	AY.56	0.001605
ORF3a	257	N257del1	Aat	-at	1	1	AY.59	0.00053
ORF3a	257	N257del	AAT	---	1	1	AY.59	0.00053
ORF3a	257	N257Y	Aat	Tat	1	1	AY.6	0.000041
ORF3a	257	N257del1	Aat	-at	1	1	AY.60	0.000938
ORF3a	257	N257del1	Aat	-at	1	1	AY.62	0.000436
ORF3a	257	N257del	AAT	---	1	1	AY.62	0.000436
ORF3a	257	N257del1	Aat	-at	1	1	AY.65	0.000533
ORF3a	257	N257del	AAT	---	1	1	AY.65	0.000533
ORF3a	257	N257del	AAT	---	1	1	AY.66	0.00107
ORF3a	257	N257del1	Aat	-at	1	1	AY.67	0.000464
ORF3a	257	N257K	aaT	aaA	1	1	AY.69	0.000187
ORF3a	257	N257del	AAT	---	1	1	AY.70	0.000209
ORF3a	257	N257del1	Aat	-at	1	1	AY.73	0.000665
ORF3a	257	N257del1	Aat	-at	1	1	AY.74	0.000116
ORF3a	257	N257I	aAt	aTt	1	1	AY.75	0.000056
ORF3a	257	N257H	Aat	Cat	1	1	AY.75	0.000056
ORF3a	257	N257del2	aAT	a--	1	1	AY.75	0.000056
ORF3a	257	N257N	aaT	aaC	1	1	AY.75.1	0.00018
ORF3a	257	N257del1	Aat	-at	1	1	AY.75.1	0.00018
ORF3a	257	N257del1	Aat	-at	1	1	AY.79	0.001211
ORF3a	257	N257D	Aat	Gat	1	1	AY.8	0.000606
ORF3a	257	N257del	AAT	---	1	1	AY.8	0.000606
ORF3a	257	N257del1	Aat	-at	1	1	AY.84	0.000437
ORF3a	257	N257D	Aat	Gat	1	1	AY.84	0.000437
ORF3a	257	N257del1	Aat	-at	1	1	AY.85	0.000427
ORF3a	257	N257del	AAT	---	1	1	AY.87	0.000833
ORF3a	257	N257D	Aat	Gat	1	1	AY.9	0.000068
ORF3a	257	N257N	aaT	aaC	1	1	AY.9.2	0.000037
ORF3a	257	N257D	Aat	Gat	1	1	AY.93	0.000273
ORF3a	257	N257D	Aat	Gat	1	1	AY.95	0.000761
ORF3a	257	N257D	Aat	Gat	1	1	AY.98	0.000079
ORF3a	257	N257del1	Aat	-at	1	1	AY.98.1	0.000048
ORF3a	257	N257N	aaT	aaC	1	1	AY.99.2	0.000092
ORF3a	257	N257del	AAT	---	1	1	AZ.2	0.000821
ORF3a	257	N257I	aAt	aTt	1	1	B.1	0.000009
ORF3a	257	N257Y	Aat	Tat	1	1	B.1.1	0.000018
ORF3a	257	N257del2	AAt	--t	1	1	B.1.1	0.000018
ORF3a	257	N257V	AAt	GTt	1	1	B.1.1	0.000018
ORF3a	257	N257del	AAT	---	1	1	B.1.1.10	0.001115
ORF3a	257	N257del1	Aat	-at	1	1	B.1.1.117	0.009709
ORF3a	257	N257del1	Aat	-at	1	1	B.1.1.133	0.008475
ORF3a	257	N257del1	Aat	-at	1	1	B.1.1.135	0.004695
ORF3a	257	N257del	AAT	---	1	1	B.1.1.153	0.001095
ORF3a	257	N257del1	Aat	-at	1	1	B.1.1.161	0.003534
ORF3a	257	N257D	Aat	Gat	1	1	B.1.1.189	0.001513
ORF3a	257	N257del1	Aat	-at	1	1	B.1.1.192	0.002309
ORF3a	257	N257N	aaT	aaC	1	1	B.1.1.204	0.00304
ORF3a	257	N257del1	Aat	-at	1	1	B.1.1.207	0.001182
ORF3a	257	N257N	aaT	aaC	1	1	B.1.1.214	0.000055
ORF3a	257	N257del	AAT	---	1	1	B.1.1.222	0.000204
ORF3a	257	N257S	aAt	aGt	1	1	B.1.1.232	0.001815
ORF3a	257	N257del1	Aat	-at	1	1	B.1.1.244	0.015385
ORF3a	257	N257S	aAt	aGt	1	1	B.1.1.25	0.000569
ORF3a	257	N257D	Aat	Gat	1	1	B.1.1.277	0.000759
ORF3a	257	N257del	AAT	---	1	1	B.1.1.28	0.000311
ORF3a	257	N257del	AAT	---	1	1	B.1.1.285	0.006536
ORF3a	257	N257del	AAT	---	1	1	B.1.1.294	0.001266
ORF3a	257	N257del	AAT	---	1	1	B.1.1.301	0.001179
ORF3a	257	N257del1	Aat	-at	1	1	B.1.1.308	0.011765
ORF3a	257	N257del	AAT	---	1	1	B.1.1.315	0.008475
ORF3a	257	N257del1	Aat	-at	1	1	B.1.1.322	0.008772
ORF3a	257	N257del	AAT	---	1	1	B.1.1.33	0.000421
ORF3a	257	N257I	aAt	aTt	1	1	B.1.1.33	0.000421
ORF3a	257	N257del	AAT	---	1	1	B.1.1.351	0.002793
ORF3a	257	N257del1	Aat	-at	1	1	B.1.1.368	0.003086
ORF3a	257	N257S	aAt	aGt	1	1	B.1.1.369	0.000446
ORF3a	257	N257del1	Aat	-at	1	1	B.1.1.369	0.000446
ORF3a	257	N257N	aaT	aaC	1	1	B.1.1.39	0.00051
ORF3a	257	N257del1	Aat	-at	1	1	B.1.1.398	0.003226
ORF3a	257	N257del	AAT	---	1	1	B.1.1.4	0.002976
ORF3a	257	N257N	aaT	aaC	1	1	B.1.1.409	0.002833
ORF3a	257	N257del1	Aat	-at	1	1	B.1.1.420	0.001006
ORF3a	257	N257del	AAT	---	1	1	B.1.1.420	0.001006
ORF3a	257	N257del	AAT	---	1	1	B.1.1.430	0.041667
ORF3a	257	N257del	AAT	---	1	1	B.1.1.432	0.001266
ORF3a	257	N257del1	Aat	-at	1	1	B.1.1.434	0.000349
ORF3a	257	N257del	AAT	---	1	1	B.1.1.44	0.00241
ORF3a	257	N257del1	Aat	-at	1	1	B.1.1.448	0.002033
ORF3a	257	N257del1	Aat	-at	1	1	B.1.1.481	0.071429
ORF3a	257	N257del1	Aat	-at	1	1	B.1.1.5	0.008333
ORF3a	257	N257del1	Aat	-at	1	1	B.1.1.50	0.000679
ORF3a	257	N257del	AAT	---	1	1	B.1.1.50	0.000679
ORF3a	257	N257D	Aat	Gat	1	1	B.1.1.519	0.00004
ORF3a	257	N257N	aaT	aaC	1	1	B.1.1.519	0.00004
ORF3a	257	N257del1	Aat	-at	1	1	B.1.1.526	0.003546
ORF3a	257	N257K	aaT	aaA	1	1	B.1.1.7	0.000001
ORF3a	257	N257G	AAt	GGt	1	1	B.1.1.7	0.000001
ORF3a	257	N257del	AAT	---	1	1	B.1.128	0.000635
ORF3a	257	N257K	aaT	aaG	1	1	B.1.139	0.000733
ORF3a	257	N257del	AAT	---	1	1	B.1.149	0.003425
ORF3a	257	N257del1	Aat	-at	1	1	B.1.160.30	0.002976
ORF3a	257	N257del	AAT	---	1	1	B.1.160.33	0.004425
ORF3a	257	N257N	aaT	aaC	1	1	B.1.160.8	0.001289
ORF3a	257	N257del1	Aat	-at	1	1	B.1.170	0.00431
ORF3a	257	N257Y	Aat	Tat	1	1	B.1.177	0.000013
ORF3a	257	N257S	aAt	aGt	1	1	B.1.177	0.000013
ORF3a	257	N257del1	Aat	-at	1	1	B.1.177.17	0.000821
ORF3a	257	N257N	aaT	aaC	1	1	B.1.177.17	0.000821
ORF3a	257	N257N	aaT	aaC	1	1	B.1.177.21	0.000076
ORF3a	257	N257del1	Aat	-at	1	1	B.1.177.21	0.000076
ORF3a	257	N257Y	Aat	Tat	1	1	B.1.177.21	0.000076
ORF3a	257	N257del	AAT	---	1	1	B.1.177.31	0.011494
ORF3a	257	N257N	aaT	aaC	1	1	B.1.177.31	0.011494
ORF3a	257	N257del1	Aat	-at	1	1	B.1.177.32	0.00135
ORF3a	257	N257del1	Aat	-at	1	1	B.1.177.33	0.001645
ORF3a	257	N257del1	Aat	-at	1	1	B.1.177.4	0.000211
ORF3a	257	N257del1	Aat	-at	1	1	B.1.177.43	0.001477
ORF3a	257	N257del	AAT	---	1	1	B.1.177.45	0.000381
ORF3a	257	N257I	aAt	aTt	1	1	B.1.177.46	0.000918
ORF3a	257	N257del1	Aat	-at	1	1	B.1.177.5	0.001242
ORF3a	257	N257del	AAT	---	1	1	B.1.177.5	0.001242
ORF3a	257	N257del	AAT	---	1	1	B.1.177.54	0.000606
ORF3a	257	N257D	Aat	Gat	1	1	B.1.177.54	0.000606
ORF3a	257	N257S	aAt	aGt	1	1	B.1.177.60	0.000218
ORF3a	257	N257del	AAT	---	1	1	B.1.177.65	0.000665
ORF3a	257	N257del	AAT	---	1	1	B.1.177.68	0.015152
ORF3a	257	N257del2	aAT	a--	1	1	B.1.177.7	0.000165
ORF3a	257	N257K	aaT	aaG	1	1	B.1.177.73	0.000566
ORF3a	257	N257del	AAT	---	1	1	B.1.177.77	0.000726
ORF3a	257	N257Y	Aat	Tat	1	1	B.1.177.81	0.000189
ORF3a	257	N257del	AAT	---	1	1	B.1.177.81	0.000189
ORF3a	257	N257del	AAT	---	1	1	B.1.177.87	0.000728
ORF3a	257	N257del	AAT	---	1	1	B.1.178	0.02381
ORF3a	257	N257T	aAt	aCt	1	1	B.1.2	0.000009
ORF3a	257	N257Y	Aat	Tat	1	1	B.1.210	0.002132
ORF3a	257	N257del	AAT	---	1	1	B.1.221.4	0.004167
ORF3a	257	N257del	AAT	---	1	1	B.1.237	0.004975
ORF3a	257	N257del1	Aat	-at	1	1	B.1.239	0.001221
ORF3a	257	N257del1	Aat	-at	1	1	B.1.241	0.000812
ORF3a	257	N257del1	Aat	-at	1	1	B.1.243.1	0.022222
ORF3a	257	N257del	AAT	---	1	1	B.1.247	0.014925
ORF3a	257	N257del1	Aat	-at	1	1	B.1.258.11	0.000396
ORF3a	257	N257del1	Aat	-at	1	1	B.1.258.14	0.00098
ORF3a	257	N257N	aaT	aaC	1	1	B.1.258.22	0.002667
ORF3a	257	N257del	AAT	---	1	1	B.1.258.3	0.001675
ORF3a	257	N257N	aaT	aaC	1	1	B.1.260	0.003344
ORF3a	257	N257del1	Aat	-at	1	1	B.1.260	0.003344
ORF3a	257	N257del	AAT	---	1	1	B.1.265	0.001271
ORF3a	257	N257N	aaT	aaC	1	1	B.1.279	0.000514
ORF3a	257	N257del	AAT	---	1	1	B.1.279	0.000514
ORF3a	257	N257del	AAT	---	1	1	B.1.298	0.002114
ORF3a	257	N257N	aaT	aaC	1	1	B.1.311	0.000275
ORF3a	257	N257del1	Aat	-at	1	1	B.1.320	0.001245
ORF3a	257	N257del	AAT	---	1	1	B.1.320	0.001245
ORF3a	257	N257del1	Aat	-at	1	1	B.1.323	0.020833
ORF3a	257	N257del1	Aat	-at	1	1	B.1.324	0.001605
ORF3a	257	N257del	AAT	---	1	1	B.1.324	0.001605
ORF3a	257	N257del	AAT	---	1	1	B.1.336	0.002439
ORF3a	257	N257N	aaT	aaC	1	1	B.1.337	0.005587
ORF3a	257	N257del1	Aat	-at	1	1	B.1.349	0.000715
ORF3a	257	N257I	aAt	aTt	1	1	B.1.351	0.00003
ORF3a	257	N257D	Aat	Gat	1	1	B.1.351	0.00003
ORF3a	257	N257S	aAt	aGt	1	1	B.1.351.5	0.0006
ORF3a	257	N257del1	Aat	-at	1	1	B.1.356	0.001727
ORF3a	257	N257del2	AAt	--t	1	1	B.1.36	0.000146
ORF3a	257	N257del1	Aat	-at	1	1	B.1.36.1	0.00114
ORF3a	257	N257N	aaT	aaC	1	1	B.1.36.10	0.004785
ORF3a	257	N257del1	Aat	-at	1	1	B.1.36.16	0.001425
ORF3a	257	N257del1	Aat	-at	1	1	B.1.36.18	0.00042
ORF3a	257	N257del	AAT	---	1	1	B.1.36.29	0.000517
ORF3a	257	N257del1	Aat	-at	1	1	B.1.36.31	0.001751
ORF3a	257	N257del2	AAt	--t	1	1	B.1.36.8	0.001
ORF3a	257	N257del	AAT	---	1	1	B.1.36.8	0.001
ORF3a	257	N257del1	Aat	-at	1	1	B.1.362	0.001541
ORF3a	257	N257del1	Aat	-at	1	1	B.1.367	0.000792
ORF3a	257	N257del	AAT	---	1	1	B.1.380	0.006623
ORF3a	257	N257del1	Aat	-at	1	1	B.1.396	0.000706
ORF3a	257	N257del	AAT	---	1	1	B.1.399	0.001934
ORF3a	257	N257N	aaT	aaC	1	1	B.1.400	0.000429
ORF3a	257	N257del1	Aat	-at	1	1	B.1.404	0.001302
ORF3a	257	N257del	AAT	---	1	1	B.1.405	0.012346
ORF3a	257	N257del1	Aat	-at	1	1	B.1.409	0.000781
ORF3a	257	N257del	AAT	---	1	1	B.1.409	0.000781
ORF3a	257	N257del1	Aat	-at	1	1	B.1.411	0.003704
ORF3a	257	N257del	AAT	---	1	1	B.1.422	0.000812
ORF3a	257	N257I	aAt	aTt	1	1	B.1.427	0.00005
ORF3a	257	N257Y	Aat	Tat	1	1	B.1.427	0.00005
ORF3a	257	N257del1	Aat	-at	1	1	B.1.438	0.006536
ORF3a	257	N257del1	Aat	-at	1	1	B.1.438.1	0.000107
ORF3a	257	N257del1	Aat	-at	1	1	B.1.438.4	0.021277
ORF3a	257	N257del1	Aat	-at	1	1	B.1.448	0.002625
ORF3a	257	N257Y	Aat	Tat	1	1	B.1.456	0.003268
ORF3a	257	N257del	AAT	---	1	1	B.1.459	0.004082
ORF3a	257	N257Y	Aat	Tat	1	1	B.1.466.2	0.000391
ORF3a	257	N257del	AAT	---	1	1	B.1.466.2	0.000391
ORF3a	257	N257del	AAT	---	1	1	B.1.470	0.001404
ORF3a	257	N257del1	Aat	-at	1	1	B.1.470	0.001404
ORF3a	257	N257del	AAT	---	1	1	B.1.473	0.019231
ORF3a	257	N257del	AAT	---	1	1	B.1.497	0.000315
ORF3a	257	N257del1	Aat	-at	1	1	B.1.497	0.000315
ORF3a	257	N257del	AAT	---	1	1	B.1.499	0.00105
ORF3a	257	N257N	aaT	aaC	1	1	B.1.507	0.011236
ORF3a	257	N257del1	Aat	-at	1	1	B.1.516	0.001957
ORF3a	257	N257del	AAT	---	1	1	B.1.521	0.004975
ORF3a	257	N257T	aAT	aCC	1	1	B.1.525	0.000113
ORF3a	257	N257del1	Aat	-at	1	1	B.1.525	0.000113
ORF3a	257	N257H	Aat	Cat	1	1	B.1.525	0.000113
ORF3a	257	N257K	aaT	aaG	1	1	B.1.526	0.000024
ORF3a	257	N257D	Aat	Gat	1	1	B.1.526	0.000024
ORF3a	257	N257H	Aat	Cat	1	1	B.1.526	0.000024
ORF3a	257	N257del1	Aat	-at	1	1	B.1.544	0.006024
ORF3a	257	N257S	aAt	aGt	1	1	B.1.551	0.00129
ORF3a	257	N257del1	Aat	-at	1	1	B.1.551	0.00129
ORF3a	257	N257del	AAT	---	1	1	B.1.551	0.00129
ORF3a	257	N257D	Aat	Gat	1	1	B.1.560	0.00463
ORF3a	257	N257del1	Aat	-at	1	1	B.1.561	0.000397
ORF3a	257	N257N	aaT	aaC	1	1	B.1.561	0.000397
ORF3a	257	N257D	Aat	Gat	1	1	B.1.561	0.000397
ORF3a	257	N257del	AAT	---	1	1	B.1.561	0.000397
ORF3a	257	N257del1	Aat	-at	1	1	B.1.564	0.000426
ORF3a	257	N257del	AAT	---	1	1	B.1.564	0.000426
ORF3a	257	N257del	AAT	---	1	1	B.1.575	0.000303
ORF3a	257	N257D	Aat	Gat	1	1	B.1.575	0.000303
ORF3a	257	N257del1	Aat	-at	1	1	B.1.582	0.000491
ORF3a	257	N257K	aaT	aaG	1	1	B.1.590	0.004545
ORF3a	257	N257S	aAt	aGt	1	1	B.1.595	0.000261
ORF3a	257	N257K	aaT	aaG	1	1	B.1.595	0.000261
ORF3a	257	N257N	aaT	aaC	1	1	B.1.596	0.000087
ORF3a	257	N257del1	Aat	-at	1	1	B.1.601	0.030303
ORF3a	257	N257del	AAT	---	1	1	B.1.609	0.000479
ORF3a	257	N257K	aaT	aaG	1	1	B.1.612	0.002653
ORF3a	257	N257del	AAT	---	1	1	B.1.617.1	0.000129
ORF3a	257	N257del1	Aat	-at	1	1	B.1.617.1	0.000129
ORF3a	257	N257I	aAt	aTt	1	1	B.1.617.2	0.000004
ORF3a	257	N257T	aAt	aCt	1	1	B.1.617.2	0.000004
ORF3a	257	N257I	aAT	aTC	1	1	B.1.621.1	0.000506
ORF3a	257	N257H	Aat	Cat	1	1	B.1.621.1	0.000506
ORF3a	257	N257del	AAT	---	1	1	B.1.623	0.000536
ORF3a	257	N257del	AAT	---	1	1	B.1.625	0.002353
ORF3a	257	N257del2	AAt	--t	1	1	B.1.628	0.000352
ORF3a	257	N257H	Aat	Cat	1	1	B.1.628	0.000352
ORF3a	257	N257del	AAT	---	1	1	B.1.628	0.000352
ORF3a	257	N257del	AAT	---	1	1	B.1.634	0.003425
ORF3a	257	N257del1	Aat	-at	1	1	B.1.638	0.052632
ORF3a	257	N257del1	Aat	-at	1	1	B.3	0.000831
ORF3a	257	N257del1	Aat	-at	1	1	B.4	0.002208
ORF3a	257	N257del	AAT	---	1	1	B.40	0.000364
ORF3a	257	N257del1	Aat	-at	1	1	B.6	0.00091
ORF3a	257	N257D	Aat	Gat	1	1	B.6.6	0.000889
ORF3a	257	N257D	Aat	Gat	1	1	C.1.2	0.004255
ORF3a	257	N257del1	Aat	-at	1	1	C.30.1	0.006711
ORF3a	257	N257del	AAT	---	1	1	C.35	0.000774
ORF3a	257	N257del1	Aat	-at	1	1	C.35	0.000774
ORF3a	257	N257del	AAT	---	1	1	C.36.3.1	0.002717
ORF3a	257	N257N	aaT	aaC	1	1	C.37	0.000116
ORF3a	257	N257del	AAT	---	1	1	C.6	0.037037
ORF3a	257	N257Y	Aat	Tat	1	1	D.2	0.000075
ORF3a	257	N257del1	Aat	-at	1	1	N.6	0.007092
ORF3a	257	N257D	Aat	Gat	1	1	P.1	0.000016
ORF3a	257	N257Y	Aat	Tat	1	1	P.1	0.000016
ORF3a	257	N257N	aaT	aaC	1	1	P.1.10	0.000269
ORF3a	257	N257Y	Aat	Tat	1	1	P.1.10	0.000269
ORF3a	257	N257N	aaT	aaC	1	1	P.1.14	0.000048
ORF3a	257	N257del1	Aat	-at	1	1	P.1.15	0.000232
ORF3a	257	N257del1	Aat	-at	1	1	P.1.3	0.034483
ORF3a	257	N257del1	Aat	-at	1	1	P.1.7	0.000319
ORF3a	257	N257del	AAT	---	1	1	P.6	0.003145
ORF3a	257	N257del	AAT	---	1	1	Q.1	0.000126
ORF3a	257	N257del	AAT	---	1	1	Q.3	0.000145
ORF3a	257	N257Y	Aat	Tat	1	1	Q.3	0.000145
ORF3a	257	N257N	aaT	aaC	1	1	Q.7	0.001111
ORF3a	257	N257S	aAt	aGt	1	1	Q.8	0.000165
ORF3a	257	N257N	aaT	aaC	1	1	R.1	0.00009
ORF3a	257	N257del1	Aat	-at	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.