CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 256 & Codon = gAt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a256V256DnonsyngTtgAt15091509126158-26160

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a256V256DgTtgAt15091509All0.000289
ORF3a256V256DgTtgAt316316B.1.1.70.000283
ORF3a256V256DgTtgAt174174AY.430.000771
ORF3a256V256DgTtgAt141141B.1.2580.009383
ORF3a256V256DgTtgAt103103B.1.177.150.064984
ORF3a256V256DgTtgAt8484AY.40.000131
ORF3a256V256DgTtgAt5656B.1.617.20.000211
ORF3a256V256DgTtgAt4444B.1.1770.000579
ORF3a256V256DgTtgAt4343B.10.000394
ORF3a256V256DgTtgAt3434B.1.5260.000799
ORF3a256V256DgTtgAt3232AY.360.004743
ORF3a256V256DgTtgAt2727AY.250.000162
ORF3a256V256DgTtgAt2727AY.440.000164
ORF3a256V256DgTtgAt2626P.10.00041
ORF3a256V256DgTtgAt2222B.1.1600.000686
ORF3a256V256DgTtgAt1919B.1.20.000167
ORF3a256V256DgTtgAt1717B.1.10.000308
ORF3a256V256DgTtgAt1515AY.260.000425
ORF3a256V256DgTtgAt1313AY.99.20.001198
ORF3a256V256DgTtgAt1313B.1.5950.003392
ORF3a256V256DgTtgAt1111B.1.1.370.002122
ORF3a256V256DgTtgAt1010AY.390.000247
ORF3a256V256DgTtgAt1010B.1.177.860.001835
ORF3a256V256DgTtgAt1010Q.20.006135
ORF3a256V256DgTtgAt99AY.200.00035
ORF3a256V256DgTtgAt99AY.30.00009
ORF3a256V256DgTtgAt99B.1.2430.000626
ORF3a256V256DgTtgAt88AY.470.000249
ORF3a256V256DgTtgAt88B.1.1.10.002614
ORF3a256V256DgTtgAt77AY.290.00011
ORF3a256V256DgTtgAt77B.1.621.10.003541
ORF3a256V256DgTtgAt66AY.1020.000159
ORF3a256V256DgTtgAt66AY.9.20.00022
ORF3a256V256DgTtgAt66B.1.1.5190.000238
ORF3a256V256DgTtgAt66B.1.6320.040268
ORF3a256V256DgTtgAt55B.1.2400.001078
ORF3a256V256DgTtgAt55B.1.3510.000149
ORF3a256V256DgTtgAt55B.1.4290.000118
ORF3a256V256DgTtgAt44AY.1030.000025
ORF3a256V256DgTtgAt44AY.50.000083
ORF3a256V256DgTtgAt44AY.680.001095
ORF3a256V256DgTtgAt44B.1.4270.000202
ORF3a256V256DgTtgAt44B.1.438.10.000429
ORF3a256V256DgTtgAt44B.1.5250.000453
ORF3a256V256DgTtgAt44P.1.140.000191
ORF3a256V256DgTtgAt33AY.1170.000254
ORF3a256V256DgTtgAt33AY.1210.000406
ORF3a256V256DgTtgAt33AY.610.000314
ORF3a256V256DgTtgAt33AY.670.001393
ORF3a256V256DgTtgAt33AY.750.000168
ORF3a256V256DgTtgAt33B.1.1.1700.003741
ORF3a256V256DgTtgAt33B.1.1.2140.000166
ORF3a256V256DgTtgAt33B.1.1.250.001706
ORF3a256V256DgTtgAt33B.1.1.3110.001074
ORF3a256V256DgTtgAt33B.1.258.170.000312
ORF3a256V256DgTtgAt33B.1.360.000438
ORF3a256V256DgTtgAt22AY.100.00106
ORF3a256V256DgTtgAt22AY.1200.000074
ORF3a256V256DgTtgAt22AY.29.10.000441
ORF3a256V256DgTtgAt22AY.460.000208
ORF3a256V256DgTtgAt22AY.950.001522
ORF3a256V256DgTtgAt22AZ.10.001735
ORF3a256V256DgTtgAt22B.1.1.390.001019
ORF3a256V256DgTtgAt22B.1.177.170.001642
ORF3a256V256DgTtgAt22B.1.2340.000264
ORF3a256V256DgTtgAt22B.1.3980.005952
ORF3a256V256DgTtgAt22B.1.4250.005988
ORF3a256V256DgTtgAt22B.1.5770.001375
ORF3a256V256DgTtgAt22B.1.5960.000174
ORF3a256V256DgTtgAt22B.60.00182
ORF3a256V256DgTtgAt22D.20.00015
ORF3a256V256DgTtgAt22P.1.70.000639
ORF3a256V256DgTtgAt22P.20.000373
ORF3a256V256DgTtgAt11A.10.000282
ORF3a256V256DgTtgAt11AE.80.000489
ORF3a256V256DgTtgAt11AY.1160.000287
ORF3a256V256DgTtgAt11AY.1180.000063
ORF3a256V256DgTtgAt11AY.1190.000035
ORF3a256V256DgTtgAt11AY.140.000088
ORF3a256V256DgTtgAt11AY.160.00038
ORF3a256V256DgTtgAt11AY.240.000431
ORF3a256V256DgTtgAt11AY.3.10.000085
ORF3a256V256DgTtgAt11AY.330.000067
ORF3a256V256DgTtgAt11AY.350.000233
ORF3a256V256DgTtgAt11AY.370.000316
ORF3a256V256DgTtgAt11AY.400.000964
ORF3a256V256DgTtgAt11AY.420.00004
ORF3a256V256DgTtgAt11AY.450.000122
ORF3a256V256DgTtgAt11AY.46.10.001027
ORF3a256V256DgTtgAt11AY.46.50.000198
ORF3a256V256DgTtgAt11AY.5.30.000337
ORF3a256V256DgTtgAt11AY.620.000436
ORF3a256V256DgTtgAt11AY.660.00107
ORF3a256V256DgTtgAt11AY.700.000209
ORF3a256V256DgTtgAt11AY.710.000475
ORF3a256V256DgTtgAt11AY.9.10.000084
ORF3a256V256DgTtgAt11AY.920.000287
ORF3a256V256DgTtgAt11AY.980.000079
ORF3a256V256DgTtgAt11AY.98.10.000048
ORF3a256V256DgTtgAt11B.1.1.100.001115
ORF3a256V256DgTtgAt11B.1.1.1530.001095
ORF3a256V256DgTtgAt11B.1.1.280.000311
ORF3a256V256DgTtgAt11B.1.1.2940.001266
ORF3a256V256DgTtgAt11B.1.1.3010.001179
ORF3a256V256DgTtgAt11B.1.1.3150.008475
ORF3a256V256DgTtgAt11B.1.1.3170.000412
ORF3a256V256DgTtgAt11B.1.1.4300.041667
ORF3a256V256DgTtgAt11B.1.1.500.000679
ORF3a256V256DgTtgAt11B.1.1.630.000386
ORF3a256V256DgTtgAt11B.1.110.30.000718
ORF3a256V256DgTtgAt11B.1.177.160.000664
ORF3a256V256DgTtgAt11B.1.177.210.000076
ORF3a256V256DgTtgAt11B.1.177.310.011494
ORF3a256V256DgTtgAt11B.1.177.40.000211
ORF3a256V256DgTtgAt11B.1.177.450.000381
ORF3a256V256DgTtgAt11B.1.177.540.000606
ORF3a256V256DgTtgAt11B.1.177.600.000218
ORF3a256V256DgTtgAt11B.1.177.650.000665
ORF3a256V256DgTtgAt11B.1.177.680.015152
ORF3a256V256DgTtgAt11B.1.177.770.000726
ORF3a256V256DgTtgAt11B.1.1780.02381
ORF3a256V256DgTtgAt11B.1.2470.014925
ORF3a256V256DgTtgAt11B.1.258.30.001675
ORF3a256V256DgTtgAt11B.1.3240.001605
ORF3a256V256DgTtgAt11B.1.36.80.001
ORF3a256V256DgTtgAt11B.1.3990.001934
ORF3a256V256DgTtgAt11B.1.4050.012346
ORF3a256V256DgTtgAt11B.1.4220.000812
ORF3a256V256DgTtgAt11B.1.4990.00105
ORF3a256V256DgTtgAt11B.1.5640.000426
ORF3a256V256DgTtgAt11B.1.5750.000303
ORF3a256V256DgTtgAt11B.1.6090.000479
ORF3a256V256DgTtgAt11B.1.6210.000089
ORF3a256V256DgTtgAt11B.1.6230.000536
ORF3a256V256DgTtgAt11B.1.6250.002353
ORF3a256V256DgTtgAt11B.1.6340.003425
ORF3a256V256DgTtgAt11B.1.6370.000073
ORF3a256V256DgTtgAt11B.400.000364
ORF3a256V256DgTtgAt11C.350.000774
ORF3a256V256DgTtgAt11C.36.30.000567
ORF3a256V256DgTtgAt11C.370.000116
ORF3a256V256DgTtgAt11C.60.037037
ORF3a256V256DgTtgAt11Q.10.000126
ORF3a256V256DgTtgAt11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.